Citrus Sinensis ID: 015370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MAARSFFLGLRRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
MAARSFFlglrrasntkiknrpnsdyecffysrflssgssqnecldeetsnsdgkddlksrifrislpkrsaTNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEfvlsdsdyaTRIDLMTKVFGihsgeryfeglplsaktsETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKrknvvpdifTYNLWISSCAATLNIDQVKKFLDemscdsggsddwvKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGafsdvgltEKANEFHMLLLQkncaptnasg
Flexible Loop (DISEMBL)
maarsfflglrrasntkiknrpnsdYECFFYSRFLSSGSSQNECLDeetsnsdgkddlksrifrislpkrsatnviqrwvsegnqatvsELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLqkncaptnasg
Low Complexity Region (SEG)
MAARSFFLGLRRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG
Disordered region (IsUnstruct)
************************DYECFFYSRFL*****************************I*****SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN********
Disordered Region (DISOPRED)
****SF**************RPNSDYECFFYSRFLSS******************DDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN***
Disordered Region (DISEMBL)
MAARSFFLGLRRASNTKIKNRPNSDYECFFYSRFLS******************KDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG
Disordered Region (DISPRO)
MAARSFFLGLRRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAARSFFLGLRRASNTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q94B59	409	Pentatricopeptide repeat-	yes	no	0.973	0.970	0.581	1e-137
Q9SY07	532	Pentatricopeptide repeat-	no	no	0.894	0.686	0.325	1e-56
Q3E911	491	Pentatricopeptide repeat-	no	no	0.860	0.714	0.334	4e-51
O22714	491	Pentatricopeptide repeat-	no	no	0.735	0.610	0.372	2e-50
Q9SKU6	490	Pentatricopeptide repeat-	no	no	0.852	0.710	0.326	3e-49
Q8LPS6	524	Pentatricopeptide repeat-	no	no	0.838	0.652	0.310	1e-44
Q84JR3	492	Pentatricopeptide repeat-	no	no	0.872	0.723	0.307	3e-44
Q9FZ24	537	Pentatricopeptide repeat-	no	no	0.843	0.640	0.293	2e-40
Q93WC5	502	Pentatricopeptide repeat-	no	no	0.764	0.621	0.317	6e-39
Q9C7F1	566	Putative pentatricopeptid	no	no	0.767	0.553	0.303	3e-33

>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 16/413 (3%)

Query: 1   MAARSFFLGLR-RASNTK------IKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSD 53
           MA RS F  LR R +N        I+N  +S +     S+  ++ ++    L EE   S+
Sbjct: 1   MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SE 52

Query: 54  GKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEW 113
            KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EW
Sbjct: 53  EKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEW 112

Query: 114 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173
           MV H+E  +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K T
Sbjct: 113 MVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQT 172

Query: 174 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
           E+AE LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV  V+E +K+K V PDIFTYNL
Sbjct: 173 ERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNL 232

Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
           W+SSCAAT NID+++K L+EM  D+  ++ WV+Y++L +IYI +S + NAES+  VEAEK
Sbjct: 233 WLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEK 292

Query: 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
           SI+QR+WITYDFL+IL+ GLGNK  IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E
Sbjct: 293 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLRE 352

Query: 353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
             EII QWK+S T++FD SAC R+L AF DVGL   A+ FH++L+   C+  N
Sbjct: 353 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 211/369 (57%), Gaps = 4/369 (1%)

Query: 36  SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHIL 95
           S G    E  +++ +   G+D L  R+  +   KRSA   I++W  EG+     EL  I+
Sbjct: 41  SGGGKGGESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIV 100

Query: 96  KELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK 155
           +ELRK +RYKHALEI EWMV  ++  L   DYA  +DL++K+ G++S E++FE +P   +
Sbjct: 101 RELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMR 160

Query: 156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
                T+LLH Y   K ++KAE LFE++ +     + L YN M+++Y+S GQ EKV +++
Sbjct: 161 GHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLI 220

Query: 216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
           +E+K +   PDI TYNLW+++ A+  +++  +K   + + +   + DWV Y  L N+Y  
Sbjct: 221 KELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAK 278

Query: 276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
             ++  A  + L E EK ++++  + Y  LI L+A LG+KD ++  WK ++ + +KM   
Sbjct: 279 TDNVEKARLA-LKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDA 337

Query: 336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 395
            Y+ ++S+ + LG  ++   + D+W +S +   D    N +L  + +        +F+  
Sbjct: 338 EYLSMISAVVKLGEFEQAKGLYDEW-ESVSGTGDARIPNLILAEYMNRDEVLLGEKFYER 396

Query: 396 LLQKNCAPT 404
           +++K   P+
Sbjct: 397 IVEKGINPS 405

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1

 Score =  202 bits (514), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 48  ETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHA 107
           +TS+   ++ LK  I R + P+RS T+++Q  +  G+  ++SELR I K L +S RY  A
Sbjct: 31  DTSSVANRNSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLA 89

Query: 108 LEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL---PLSAKTSET-YTAL 163
           L++ EWM   K+   S  D A R+DL+ K  G+  GE YFE L    +S + +++ Y  L
Sbjct: 90  LQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPL 149

Query: 164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 223
           L  Y   K  ++AE L E++           +NEMM LY + GQ EKV +VV  +K   +
Sbjct: 150 LRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKI 209

Query: 224 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283
             ++ +YNLW+++C     +  V+    EM  D      W     L N+YI +      E
Sbjct: 210 PRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGF---DE 266

Query: 284 SSTLV--EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 341
            + LV  +AEK + +   + Y FLI LYA LGNK+ + ++W+  +    +++  NYIC+L
Sbjct: 267 KARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVL 326

Query: 342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401
           SS +  G L+E   +  +W ++   ++D+   N LLGA+   G   KA   H  +L++  
Sbjct: 327 SSLVKTGDLEEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGG 385

Query: 402 AP 403
            P
Sbjct: 386 TP 387

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 178/303 (58%), Gaps = 3/303 (0%)

Query: 90  ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG 149
           E+   +K+LR    Y  AL++SE M   +    + SD A  +DL+ K   I +GE YF  
Sbjct: 57  EVGDTIKKLRNRGLYYPALKLSEVM-EERGMNKTVSDQAIHLDLVAKAREITAGENYFVD 115

Query: 150 LPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 209
           LP ++KT  TY +LL+ Y     TEKAE L  ++K+ N++ +++ YN +MTLY   G+ E
Sbjct: 116 LPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETE 175

Query: 210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 269
           KV  +++E+K +NV+PD +TYN+W+ + AAT +I  V++ ++EM+ D   + DW  Y N+
Sbjct: 176 KVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNM 235

Query: 270 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 329
            +IY+ A     AE + L E E   TQR +  Y FLI LY  LG   ++ +IW+SLR+  
Sbjct: 236 ASIYVDAGLSQKAEKA-LQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAI 294

Query: 330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 389
            K ++  Y+ ++   + L  L     +  +W Q+  S +DI   N L+GA++  GL +KA
Sbjct: 295 PKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QANCSTYDIRIVNVLIGAYAQEGLIQKA 353

Query: 390 NEF 392
           NE 
Sbjct: 354 NEL 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 190/352 (53%), Gaps = 4/352 (1%)

Query: 49  TSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHAL 108
            S  D  D L+ R+ R   P  S   V+  W+ +GN    SEL  I+K LRK  R+ HAL
Sbjct: 31  PSPLDPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHAL 90

Query: 109 EISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA 168
           +IS+WM  H+   +S+ D A R+DL+ KV G+   E++FE +P+  +    Y ALL+ YA
Sbjct: 91  QISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYA 150

Query: 169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 228
             K   KAE++F+ +K+       L YN M+ LY+  G+   V  ++ E++ + V PDIF
Sbjct: 151 SKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIF 210

Query: 229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 288
           T N  + + +   +++ ++KFL     D G   DW  Y +  N YI A  L       L 
Sbjct: 211 TVNTRLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAG-LTEKALEMLR 269

Query: 289 EAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 347
           ++E+ +  Q++   Y+ L+  Y   G K+++ ++W SL        +  YI ++S+ L +
Sbjct: 270 KSEQMVNAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKM 328

Query: 348 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399
             ++EV +I+++W ++  S FDI   + L+  +   G+ EKA E   +L+QK
Sbjct: 329 DDIEEVEKIMEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 187/348 (53%), Gaps = 6/348 (1%)

Query: 64  RISL---PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE- 119
           +ISL   P+  A +V+ +W   G + T  EL  ++KELRK +R   ALE+ +WM    E 
Sbjct: 72  KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGER 131

Query: 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
           F LS SD A ++DL+ KV GI   E +F  LP + K    Y +LL+ Y  AK  EKAE L
Sbjct: 132 FRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEAL 191

Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
              ++    + + L +N MMTLYM++ + +KV  +V E+K+K++  DI++YN+W+SSC +
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251

Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
             ++++++    +M  D     +W  +  +  +YI       AE + L + E  IT R  
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDA-LRKVEARITGRNR 310

Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
           I Y +L+ LY  LGNK ++ ++W   +     + +  Y  ++SS + +G ++   ++ ++
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370

Query: 360 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
           W     S +D    N L+ A+      E A      +++    P++++
Sbjct: 371 W-LPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 188/358 (52%), Gaps = 2/358 (0%)

Query: 50  SNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 109
           +N   K  L S+I  +  PK S    +Q WV  G + +V+EL  I+ +LR+ +R+ HALE
Sbjct: 19  TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78

Query: 110 ISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG 169
           +S+WM      V S +++A  +DL+ +V+G  + E YFE L    K  +TY ALL+ Y  
Sbjct: 79  VSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVR 138

Query: 170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 229
            +  EK+   FE++K+     ++L YN +M LY ++GQ EKV  V+EE+K +NV PD ++
Sbjct: 139 QQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYS 198

Query: 230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 289
           Y + I++  A  +++++   L +M      + DW  Y      YI       A    L  
Sbjct: 199 YRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRA-VELLKM 257

Query: 290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349
           +E  + ++    Y+ LI LYA LG K ++ ++W   +   ++  +++Y+ +L S + +  
Sbjct: 258 SENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDA 317

Query: 350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
           L E  E++ +WK S    +D    N ++  +    + EKA      L ++  A T  S
Sbjct: 318 LVEAEEVLTEWKSSGNC-YDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 184/348 (52%), Gaps = 4/348 (1%)

Query: 57  DLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116
           +L  ++  +S+   +    + +++ EG      +L    K LRK +R +HA EI +WM  
Sbjct: 72  ELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEK 131

Query: 117 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEK 175
            K    S SD+A  +DL+ K  G+ + E YF  L  SAK  + TY AL++ Y      EK
Sbjct: 132 RK-MTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190

Query: 176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235
           A+  FE + + N   N+L +N MM++YM + Q EKV ++V+ +K++ + P   TY++W+ 
Sbjct: 191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250

Query: 236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295
           SC +  ++D ++K +DEM  DS     W  + NL  IY T + L     S L   E+ + 
Sbjct: 251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIY-TKAGLYEKADSALKSMEEKMN 309

Query: 296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 355
                ++ FL+ LYAG+    ++ ++W+SL+  + ++ + +Y+ +L +   LG L  + +
Sbjct: 310 PNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKK 369

Query: 356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
           I  +W +S    +D+   N  +  +    + E+A +     ++K+  P
Sbjct: 370 IFTEW-ESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGP 416

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 163/315 (51%), Gaps = 3/315 (0%)

Query: 75  VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM 134
            + ++V EG      +L    K+LRK ++ + ALEI EWM   KE   + SD+A R++L+
Sbjct: 59  TLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWM-ERKEIAFTGSDHAIRLNLI 117

Query: 135 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 194
            K  G+ + E YF  L  S K   TY +LL+ Y   K   KA+  FE +   N   N+L 
Sbjct: 118 AKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLP 177

Query: 195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 254
           +N +M +YM +GQ EKV  +V  +K K++ P   TY++WI SC +  ++D V+K LDEM 
Sbjct: 178 FNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMK 237

Query: 255 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 314
            +  G   W  + NL  IYI       AE + L   E ++       Y FLI LY G+ N
Sbjct: 238 AEGEGIFSWNTFANLAAIYIKVGLYGKAEEA-LKSLENNMNPDVRDCYHFLINLYTGIAN 296

Query: 315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 374
             ++ ++W  L+     + + +Y+ +L +   L  +  V ++  +W +S    +D+   N
Sbjct: 297 ASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEW-ESTCWTYDMRMAN 355

Query: 375 RLLGAFSDVGLTEKA 389
             + ++    + E+A
Sbjct: 356 VAISSYLKQNMYEEA 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 169/323 (52%), Gaps = 10/323 (3%)

Query: 75  VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM 134
           V+++W  +GNQ   S +R I+K+LR S +   AL++SEWM   K   L   D+A R+ L+
Sbjct: 55  VLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLI 114

Query: 135 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNAL 193
             V G+   E++FE +P +A+    YT+LL+ YA +  T  KAE  F++++   L    +
Sbjct: 115 ENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPV 174

Query: 194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
            YN MM+LY ++   EKV  ++ E+K  +V  D  T N  +   +A  ++ +++KFL++ 
Sbjct: 175 PYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKW 234

Query: 254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT-YDFLIILYAGL 312
               G   +W   +++   Y+ A     A    L   E+ + Q+   + YD L+ LY   
Sbjct: 235 EGIHGIKLEWHTTLDMAKAYLRARSSGKA-MKMLRLTEQLVDQKSLKSAYDHLMKLYGEA 293

Query: 313 GNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFD 369
           GN++++ ++WK   + K K+  R+   Y  ++ S L +  +    EI   W +S   +FD
Sbjct: 294 GNREEVLRVWK---LYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVW-ESLPLEFD 349

Query: 370 ISACNRLLGAFSDVGLTEKANEF 392
                 L   + D G+TEKA + 
Sbjct: 350 HRIPTMLASGYRDRGMTEKAEKL 372

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
255563224	426	pentatricopeptide repeat-containing prot	0.987	0.946	0.710	1e-169
224141193	355	predicted protein [Populus trichocarpa]	0.855	0.983	0.757	1e-160
356554749	399	PREDICTED: pentatricopeptide repeat-cont	0.965	0.987	0.665	1e-157
356525847	395	PREDICTED: pentatricopeptide repeat-cont	0.955	0.987	0.665	1e-156
359484901	396	PREDICTED: pentatricopeptide repeat-cont	0.960	0.989	0.658	1e-155
449438238	406	PREDICTED: pentatricopeptide repeat-cont	0.987	0.992	0.608	1e-144
297806979	410	hypothetical protein ARALYDRAFT_487758 [	0.975	0.970	0.588	1e-136
18415979	409	pentatricopeptide repeat-containing prot	0.973	0.970	0.581	1e-135
21592522	409	unknown [Arabidopsis thaliana]	0.973	0.970	0.581	1e-135
388490914	358	unknown [Lotus japonicus]	0.857	0.977	0.667	1e-132

>gi|255563224|ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538091|gb|EEF39702.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/407 (71%), Positives = 342/407 (84%), Gaps = 4/407 (0%)

Query: 1   MAARSFFLGLRRAS--NTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDL 58
           MA+RSF   L+R    N+ I +  NS  + + ++ FLSSG+ +NE L EE+S+ + +DDL
Sbjct: 19  MASRSFLFNLQRICRINSGIGSLSNS--KKWEFNHFLSSGTLRNEVLAEESSSKEIEDDL 76

Query: 59  KSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHK 118
           KSRIFR+ LPKRSATN+I  WVSEGN  T SELR+I  ELRK QRYKHALEISEWMVT+K
Sbjct: 77  KSRIFRLRLPKRSATNIIHNWVSEGNTVTASELRNISNELRKLQRYKHALEISEWMVTNK 136

Query: 119 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEE 178
           EF L D DYATRIDLMTKVFGI + ERYFEGLP++ KTSETYTALLH YAG K   KAEE
Sbjct: 137 EFELMDFDYATRIDLMTKVFGIDAAERYFEGLPITVKTSETYTALLHSYAGVKQLGKAEE 196

Query: 179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238
           L+ER+K SNLSF AL YNEMMTLYMSVGQVEKV+LVVEE+KR+ + PDIFTYNLWISSCA
Sbjct: 197 LYERIKGSNLSFTALTYNEMMTLYMSVGQVEKVSLVVEELKRQKIAPDIFTYNLWISSCA 256

Query: 239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 298
           A LNIDQV + LDEM  DSG +DDW++Y+++ NIY+ A HLVN ESS +VEAEKSITQR+
Sbjct: 257 AILNIDQVTRILDEMKHDSGCNDDWLRYIDIANIYVKAGHLVNTESSAVVEAEKSITQRE 316

Query: 299 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID 358
           WITYDFLIILYAGL +KDK+DQIWKSLRMTKQKMT+RN++CILSSY+MLGHLKE GE++D
Sbjct: 317 WITYDFLIILYAGLRDKDKVDQIWKSLRMTKQKMTNRNFVCILSSYMMLGHLKEAGEVLD 376

Query: 359 QWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
           QWK+S T+DFD+SAC+RLL AFS  GLTE AN+FHMLL+++NC PTN
Sbjct: 377 QWKKSTTTDFDLSACSRLLDAFSGSGLTEIANDFHMLLIERNCDPTN 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141193|ref|XP_002323959.1| predicted protein [Populus trichocarpa] gi|222866961|gb|EEF04092.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/351 (75%), Positives = 308/351 (87%), Gaps = 2/351 (0%)

Query: 53  DGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISE 112
           + +DDLK RIFR+ LPKRS TNVI +WV EGN  + SELRHI KELRKSQR+KHALEISE
Sbjct: 5   ENEDDLKGRIFRLRLPKRSVTNVIDKWVREGNTVSSSELRHISKELRKSQRFKHALEISE 64

Query: 113 WMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW 172
           WMV H+EF LSD+D+A+RIDLMTKVFG+ + ERYF+GLPL+AKT+ETYTALLH YA AK 
Sbjct: 65  WMVAHEEFELSDTDHASRIDLMTKVFGVDAAERYFDGLPLAAKTTETYTALLHSYAAAKL 124

Query: 173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
            EKAEE ++R+K SNL F ALMYNEMMTLYMSVGQ+EKV+ VVEE+K + V PDIFTYNL
Sbjct: 125 IEKAEEFYKRIKGSNLPFTALMYNEMMTLYMSVGQLEKVSQVVEELKHQKVAPDIFTYNL 184

Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESST--LVEA 290
           WISSCAA LNID+V++ LDEMS DSG +DDW++Y+ +VNIY+TA HLVNAESST  +VEA
Sbjct: 185 WISSCAAALNIDKVRRILDEMSQDSGVNDDWMRYIKIVNIYVTAGHLVNAESSTAAVVEA 244

Query: 291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 350
           EK ITQR+WITYDFL+ILYAGLG KDKIDQIWKSLRMT QKMTSRN++CILSSYLMLGHL
Sbjct: 245 EKKITQREWITYDFLVILYAGLGKKDKIDQIWKSLRMTNQKMTSRNFVCILSSYLMLGHL 304

Query: 351 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 401
           KEVGEI+DQWKQS T+DFDISACNRLL A S +GLTE AN FHMLL+++NC
Sbjct: 305 KEVGEIVDQWKQSTTTDFDISACNRLLDAISCLGLTEIANNFHMLLIERNC 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554749|ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/403 (66%), Positives = 330/403 (81%), Gaps = 9/403 (2%)

Query: 1   MAARSFFLGLRRASNTKIKNRPNSDYECFF-YSRFLSSGSSQNECLDEETSNSDGKDDLK 59
           MA RS FL LRR S+ +     NS   C    +RF+SSG+  ++ ++E     +G DDL+
Sbjct: 1   MAHRSLFLSLRRFSSCR-----NSGLACVLNRTRFVSSGAVSSDLVEESV---EGDDDLR 52

Query: 60  SRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE 119
           SRIFR+ LPKRSATNV+Q+WV +GN  T+S+LR I KELR+SQRYKHALEISEWMV+++E
Sbjct: 53  SRIFRLRLPKRSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYKHALEISEWMVSNEE 112

Query: 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
           + LSDSDYA RIDLMT+VFGI + ERYFEGLPL+ KT+ETYTALLH YAGAK TEKAEEL
Sbjct: 113 YELSDSDYAVRIDLMTQVFGIDAAERYFEGLPLATKTTETYTALLHSYAGAKLTEKAEEL 172

Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
           ++R+K SNLSF+AL YNEMMTLYMSVGQ EKV +VVEE+K++ V PDIFTYNLWISSCAA
Sbjct: 173 YQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLWISSCAA 232

Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
            LNID+V++ LDEMS  +G ++ W++Y+NL NIYI+ +HL NA S+TLVE EK ITQRQW
Sbjct: 233 ILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKRITQRQW 292

Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
           ITYDFLIILY GLG+KDK+DQIW SL MTKQKM SRNY+CI+SSYLMLG  KEVGE+IDQ
Sbjct: 293 ITYDFLIILYGGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISSYLMLGLTKEVGEVIDQ 352

Query: 360 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 402
           WKQS T+DFD+ AC ++L AF D+GL E AN  +++L++KN +
Sbjct: 353 WKQSTTTDFDMLACKKILVAFRDIGLAEIANNLNVILIEKNLS 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525847|ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Glycine max]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/403 (66%), Positives = 323/403 (80%), Gaps = 13/403 (3%)

Query: 1   MAARSFFLGLRRASNTKIKNRPNSDYECFF-YSRFLSSGSSQNECLDEETSNSDGKDDLK 59
           MA  S FL LRR          NS   C    +RF+SSG+  ++ ++E     D  DDL+
Sbjct: 1   MAHCSLFLSLRR----------NSGLACLLNRTRFVSSGAVSSDLVEESVEGVD--DDLR 48

Query: 60  SRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE 119
           SRIFR+ LPKRSATNV+Q+WV +GN  T+S+LR I KELR+SQRYKHALEISEWMV+H+E
Sbjct: 49  SRIFRLRLPKRSATNVLQKWVLQGNPVTLSQLRDISKELRRSQRYKHALEISEWMVSHEE 108

Query: 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
           + LSDSDYA RIDL TKVFGI + ERYFEGLPL+ KT+ETYTALLH YAGAK T+KAEEL
Sbjct: 109 YELSDSDYAARIDLTTKVFGIDAAERYFEGLPLATKTAETYTALLHSYAGAKLTKKAEEL 168

Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
           ++R+K SNLSF+AL YNEMMTLYMSVGQ EKV  VVEE+K++ V PDIFTYNLWIS CAA
Sbjct: 169 YQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPSVVEELKQQKVSPDIFTYNLWISYCAA 228

Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
            LNID+V++ LDEMS  +G ++ W++Y+NL NIYI+  HL NA S+TLVE EK ITQRQW
Sbjct: 229 ILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVGHLDNASSNTLVETEKRITQRQW 288

Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
           ITYDFLIILY GLG+KDK+DQIW SLRMTKQKM SRNYICI+SSYLMLGH KEVGE+IDQ
Sbjct: 289 ITYDFLIILYGGLGSKDKLDQIWNSLRMTKQKMISRNYICIISSYLMLGHTKEVGEVIDQ 348

Query: 360 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 402
           WKQS T+DFD+ AC +++ AF D+GL E AN  +M+L++KN +
Sbjct: 349 WKQSTTTDFDMLACKKIMVAFRDMGLAEIANNLNMILIEKNLS 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484901|ref|XP_002268952.2| PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Vitis vinifera]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/410 (65%), Positives = 327/410 (79%), Gaps = 18/410 (4%)

Query: 1   MAARSFFLGLRRASNTKIKNRPNSDYECF---FYSRFLSSGSSQNECLDEETSNSDGKDD 57
           M  RS FLGL R              +C    F  R LSS + ++E L EE+ NS   DD
Sbjct: 1   MGTRSLFLGLTR--------------QCISEKFAFRLLSSRTLRSEVL-EESPNSPENDD 45

Query: 58  LKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTH 117
           LKSRIF++ LPKRS TNV+QRW+ EGNQ  +SELR+I KELR++QRYKHALEISEWMV+H
Sbjct: 46  LKSRIFKLRLPKRSVTNVLQRWLGEGNQVHISELRNISKELRRAQRYKHALEISEWMVSH 105

Query: 118 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE 177
            EF LSDSD A RIDLMT+VFGI + ERYFEGLP +AKTSETYTALLH YAGAK  EKAE
Sbjct: 106 DEFELSDSDNAVRIDLMTRVFGIDAAERYFEGLPSAAKTSETYTALLHSYAGAKLAEKAE 165

Query: 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
           EL+ER+K+SN+  N L+YNEMMTLYMSVGQVEKV+LVVEE+KR+ VVPD+FTYNLW+SSC
Sbjct: 166 ELYERIKESNVPLNILLYNEMMTLYMSVGQVEKVSLVVEELKRQKVVPDLFTYNLWVSSC 225

Query: 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297
           AATL+ID V++ L EMS +S  +D WV+Y NL NIYI A HLVN+ S+++VEA  + TQR
Sbjct: 226 AATLDIDGVRRILKEMSNNSSANDGWVRYRNLANIYIMAGHLVNSASNSVVEAGTNTTQR 285

Query: 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 357
            WITYDFLIILYAGLGNKDKIDQIWKSL+MTKQK+ SR+Y+CILSSY+MLGH+K+VG +I
Sbjct: 286 DWITYDFLIILYAGLGNKDKIDQIWKSLKMTKQKIKSRSYVCILSSYVMLGHIKDVGIVI 345

Query: 358 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
           D+WK+S T+DFDIS   RLL AF+++ L E+A  FH LL++K+C PT+ S
Sbjct: 346 DEWKKSTTTDFDISVFYRLLDAFAELRLIEEAETFHKLLIRKSCLPTDES 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Cucumis sativus] gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Cucumis sativus]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/409 (60%), Positives = 323/409 (78%), Gaps = 6/409 (1%)

Query: 1   MAARSFFLGLRRAS---NTKIKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSDGKDD 57
           MA+R+ FL   R     N   K+ P   +     S + S G+ ++E  DE + N +  +D
Sbjct: 1   MASRALFLAFSRNRGFLNQSFKSTP--VFNEANVSNYCSHGALRSESFDE-SVNYEEFND 57

Query: 58  LKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTH 117
           LKSRIF++ LPKRSA  V++RW SEGNQ T++ELR+I KELRK QRYKHALEI EWMV+H
Sbjct: 58  LKSRIFQLRLPKRSAIRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSH 117

Query: 118 KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE 177
            +  LSDSD+A RIDLMTKVFG+ + ERYFEGLP+ AKT ETYTALLH +AG+K T+KAE
Sbjct: 118 NQSELSDSDFAIRIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAE 177

Query: 178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
            L+E++K+S++   AL +NEMMTLY S+GQVEKV+ +V+++K++ V PDIFTYNLWISS 
Sbjct: 178 TLYEKMKESDIPLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSL 237

Query: 238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297
           AA LNID VK+ L+EM+ +   +++WV+Y+ LVNIY+ +++L+++ES+++VE+   I+QR
Sbjct: 238 AAALNIDGVKQILNEMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQR 297

Query: 298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 357
           +WITYD LIILYAGLGNKDKIDQIW+SLRMTKQKMTSRNYICI+S YLML  LKE+GE+I
Sbjct: 298 EWITYDLLIILYAGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVI 357

Query: 358 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 406
           DQWKQS T+DFDIS+CNRL+ AF + GL EKAN F  +L+QKNC PT A
Sbjct: 358 DQWKQSTTTDFDISSCNRLVNAFIEAGLHEKANSFVNVLIQKNCEPTEA 406

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806979|ref|XP_002871373.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp. lyrata] gi|297317210|gb|EFH47632.1| hypothetical protein ARALYDRAFT_487758 [Arabidopsis lyrata subsp. lyrata]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/413 (58%), Positives = 318/413 (76%), Gaps = 15/413 (3%)

Query: 1   MAARSFFLGLR-RASNTK------IKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSD 53
           MA RS F  LR R +N        I+N  +S      +S+  ++ ++    L EE   S+
Sbjct: 1   MATRSLFHSLRCRLTNNGVVGSNFIRNAESSS----GFSKSYNADAAIGGSLVEE---SE 53

Query: 54  GKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEW 113
            KDDLKSRIFR+ LPKRSAT V++RWV EGNQ T++ELR I KELR+++R+KHALE++EW
Sbjct: 54  EKDDLKSRIFRLRLPKRSATTVLERWVGEGNQITINELREISKELRRTRRHKHALEVTEW 113

Query: 114 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173
           MV H+E  +SD+DYA+RIDL++KVFGI + ERYFEGL + AKT+ETYT+LLH YAG+K T
Sbjct: 114 MVQHEELKVSDADYASRIDLISKVFGIDAAERYFEGLHIDAKTTETYTSLLHAYAGSKQT 173

Query: 174 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
           E+AE LF+R+ +++ LSF A+ YNEMMTLYMSVGQVEKV  V++ +K K V PDIFTYNL
Sbjct: 174 ERAEALFKRIIETDSLSFGAITYNEMMTLYMSVGQVEKVPEVIQVLKHKKVSPDIFTYNL 233

Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
           W+SSCAAT NID++++ L+EM  D+  ++ WV+Y+NL +IYI +S + NAES++ VEAEK
Sbjct: 234 WLSSCAATFNIDELRRILEEMRHDASSNEGWVRYINLTSIYINSSRVTNAESTSPVEAEK 293

Query: 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
           SI+QR+WITYDFL+IL+ GLGNK  IDQIWKSL  T QK++SR+YIC+LSSYLMLGHL+E
Sbjct: 294 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLGNTNQKLSSRSYICVLSSYLMLGHLRE 353

Query: 353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
             EII QWK+S T++FD SAC R+L AF DVGL   A+ FH+LL+   C+  N
Sbjct: 354 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGVASGFHLLLVYNKCSLEN 406

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415979|ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75165070|sp|Q94B59.1|PP372_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g09450, mitochondrial; Flags: Precursor gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis thaliana] gi|27311913|gb|AAO00922.1| putative protein [Arabidopsis thaliana] gi|332004012|gb|AED91395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 16/413 (3%)

Query: 1   MAARSFFLGLR-RASNTK------IKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSD 53
           MA RS F  LR R +N        I+N  +S +     S+  ++ ++    L EE   S+
Sbjct: 1   MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SE 52

Query: 54  GKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEW 113
            KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EW
Sbjct: 53  EKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEW 112

Query: 114 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173
           MV H+E  +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K T
Sbjct: 113 MVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQT 172

Query: 174 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
           E+AE LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV  V+E +K+K V PDIFTYNL
Sbjct: 173 ERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNL 232

Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
           W+SSCAAT NID+++K L+EM  D+  ++ WV+Y++L +IYI +S + NAES+  VEAEK
Sbjct: 233 WLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEK 292

Query: 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
           SI+QR+WITYDFL+IL+ GLGNK  IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E
Sbjct: 293 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLRE 352

Query: 353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
             EII QWK+S T++FD SAC R+L AF DVGL   A+ FH++L+   C+  N
Sbjct: 353 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592522|gb|AAM64472.1| unknown [Arabidopsis thaliana]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 16/413 (3%)

Query: 1   MAARSFFLGLR-RASNTK------IKNRPNSDYECFFYSRFLSSGSSQNECLDEETSNSD 53
           MA RS F  LR R +N        I+N  +S +     S+  ++ ++    L EE   S+
Sbjct: 1   MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRF-----SKSYNADAAIGNSLVEE---SE 52

Query: 54  GKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEW 113
            KDDLKSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EW
Sbjct: 53  EKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEW 112

Query: 114 MVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT 173
           MV H+E  +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K T
Sbjct: 113 MVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLHIDSKTAETYTSLLHAYAASKQT 172

Query: 174 EKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
           E+AE LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV  V+E +K+K V PDIFTYNL
Sbjct: 173 ERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNL 232

Query: 233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
           W+SSCAAT NID+++K L+EM  D+  ++ WV+Y++L +IYI +S + NAES+  VEAEK
Sbjct: 233 WLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEK 292

Query: 293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 352
           SI+QR+WITYDFL+IL+ GLGNK  IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E
Sbjct: 293 SISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLRE 352

Query: 353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
             EII QWK+S T++FD SAC R+L AF DVGL   A+ FH++L+   C+  N
Sbjct: 353 AEEIIHQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/358 (66%), Positives = 286/358 (79%), Gaps = 8/358 (2%)

Query: 1   MAARSFFLGLRRASNTKIKNRPNSDYECFF-YSRFLSSGSSQNECLDEETSNSDGKDDLK 59
           MA RS FL LRR S     N  +    C    +RF+SSG+   + ++ +       DDL+
Sbjct: 1   MAYRSLFLSLRRNSGFISTNSHHHQSRCLLNRARFVSSGAVSTDFVESD-------DDLR 53

Query: 60  SRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE 119
           SRI R+ LPKRSATN++ +WV EGN  TVSELR I KELR+SQRYKHALEISEWM+TH+E
Sbjct: 54  SRILRLRLPKRSATNILHKWVLEGNSVTVSELRDIAKELRRSQRYKHALEISEWMITHEE 113

Query: 120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
             LSDSDYA RIDLMTKVFGI + ERYFE LP++AKTSETYTALLH YAGAK TEKAEEL
Sbjct: 114 HGLSDSDYAMRIDLMTKVFGIDAAERYFEALPVAAKTSETYTALLHSYAGAKMTEKAEEL 173

Query: 180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
           ++R+K SNLSF+AL YNEMMTLYMSVGQVEKV  VVEE+K++NV PDIFTYNLWISSCAA
Sbjct: 174 YQRIKDSNLSFDALTYNEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAA 233

Query: 240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
           TLNID+V++ LDEMS  +  ++ W +Y+NL N+Y+TAS L N+ S++L E EK ITQ QW
Sbjct: 234 TLNIDEVRRILDEMSHGADSNESWTRYLNLANVYVTASRLDNSSSNSLAETEKRITQSQW 293

Query: 300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 357
           ITYDFLIILYAGLG+KDK+DQIW SLRMTKQKM +RNY CI+S+YLMLGH+KEV  ++
Sbjct: 294 ITYDFLIILYAGLGSKDKLDQIWNSLRMTKQKMINRNYSCIISAYLMLGHVKEVVRLL 351

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2184807	409	AT5G09450 "AT5G09450" [Arabido	0.985	0.982	0.583	1.1e-124
TAIR|locus:2140220	532	AT4G02820 "AT4G02820" [Arabido	0.892	0.684	0.329	6.8e-56
TAIR|locus:2146390	491	AT5G27460 "AT5G27460" [Arabido	0.865	0.718	0.333	1.7e-50
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.818	0.680	0.344	5.8e-50
TAIR|locus:2051379	490	AT2G20710 [Arabidopsis thalian	0.843	0.702	0.327	7.4e-50
TAIR|locus:2204793	524	AT1G02150 [Arabidopsis thalian	0.772	0.601	0.327	7.1e-45
TAIR|locus:504955535	492	AT4G21705 "AT4G21705" [Arabido	0.872	0.723	0.307	3.1e-44
TAIR|locus:2204808	537	AT1G02370 "AT1G02370" [Arabido	0.843	0.640	0.290	1.9e-42
TAIR|locus:2141360	502	AT4G01990 [Arabidopsis thalian	0.762	0.619	0.315	3.6e-41
TAIR|locus:2010459	566	AT1G28020 "AT1G28020" [Arabido	0.772	0.556	0.297	3.9e-36

TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)]

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 238/408 (58%), Positives = 315/408 (77%)

Query:     1 MAARSFFLGLR-RASNTKIKNRPN-SDYECFFYSRFLSSGSSQNECLDEETSNSDGKDDL 58
             MA RS F  LR R +N  +       + E   +S+  ++ ++    L EE   S+ KDDL
Sbjct:     1 MATRSLFHSLRCRLTNNGVLGSNFIRNAESSRFSKSYNADAAIGNSLVEE---SEEKDDL 57

Query:    59 KSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHK 118
             KSRIFR+ LPKRSAT V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EWMV H+
Sbjct:    58 KSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHE 117

Query:   119 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEE 178
             E  +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K TE+AE 
Sbjct:   118 ESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEA 177

Query:   179 LFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
             LF+R+ +S+ L+F A+ YNEMMTLYMSVGQVEKV  V+E +K+K V PDIFTYNLW+SSC
Sbjct:   178 LFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSC 237

Query:   238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 297
             AAT NID+++K L+EM  D+  ++ WV+Y++L +IYI +S + NAES+  VEAEKSI+QR
Sbjct:   238 AATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQR 297

Query:   298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 357
             +WITYDFL+IL+ GLGNK  IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E  EII
Sbjct:   298 EWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEII 357

Query:   358 DQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 405
              QWK+S T++FD SAC R+L AF DVGL   A+ FH++L+   C+  N
Sbjct:   358 HQWKESKTTEFDASACLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 122/370 (32%), Positives = 211/370 (57%)

Query:    36 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHIL 95
             S G    E  +++ +   G+D L  R+  +   KRSA   I++W  EG+     EL  I+
Sbjct:    41 SGGGKGGESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIV 100

Query:    96 KELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK 155
             +ELRK +RYKHALEI EWMV  ++  L   DYA  +DL++K+ G++S E++FE +P   +
Sbjct:   101 RELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMR 160

Query:   156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 215
                  T+LLH Y   K ++KAE LFE++ +     + L YN M+++Y+S GQ EKV +++
Sbjct:   161 GHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLI 220

Query:   216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 275
             +E+K +   PDI TYNLW+++ A+  +++  +K   +   +   + DWV Y  L N+Y  
Sbjct:   221 KELKIRTS-PDIVTYNLWLTAFASGNDVEGAEKVYLKAK-EEKLNPDWVTYSVLTNLYAK 278

Query:   276 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 335
               ++  A  + L E EK ++++  + Y  LI L+A LG+KD ++  WK ++ + +KM   
Sbjct:   279 TDNVEKARLA-LKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDA 337

Query:   336 NYICILSSYLMLGHLKEVGEIIDQWKQ-SATSDFDISACNRLLGAFSDVGLTEKANEFHM 394
              Y+ ++S+ + LG  ++   + D+W+  S T D  I   N +L  + +        +F+ 
Sbjct:   338 EYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIP--NLILAEYMNRDEVLLGEKFYE 395

Query:   395 LLLQKNCAPT 404
              +++K   P+
Sbjct:   396 RIVEKGINPS 405

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 120/360 (33%), Positives = 191/360 (53%)

Query:    48 ETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHA 107
             +TS+   ++ LK  I R + P+RS T+++Q  +  G+  ++SELR I K L +S RY  A
Sbjct:    31 DTSSVANRNSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLA 89

Query:   108 LEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL---PLSAKTSET-YTAL 163
             L++ EWM   K+   S  D A R+DL+ K  G+  GE YFE L    +S + +++ Y  L
Sbjct:    90 LQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPL 149

Query:   164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 223
             L  Y   K  ++AE L E++           +NEMM LY + GQ EKV +VV  +K   +
Sbjct:   150 LRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKI 209

Query:   224 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 283
               ++ +YNLW+++C     +  V+    EM  D      W     L N+YI +     A 
Sbjct:   210 PRNVLSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKAR 269

Query:   284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 343
                L +AEK + +   + Y FLI LYA LGNK+ + ++W+  +    +++  NYIC+LSS
Sbjct:   270 L-VLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSS 328

Query:   344 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
              +  G L+E   +  +W ++   ++D+   N LLGA+   G   KA   H  +L++   P
Sbjct:   329 LVKTGDLEEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTP 387

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 116/337 (34%), Positives = 191/337 (56%)

Query:    55 KDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWM 114
             ++ L +R+F+    +      + +++         E+   +K+LR    Y  AL++SE M
Sbjct:    22 EEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVM 81

Query:   115 VTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE 174
                +    + SD A  +DL+ K   I +GE YF  LP ++KT  TY +LL+ Y     TE
Sbjct:    82 -EERGMNKTVSDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTE 140

Query:   175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 234
             KAE L  ++K+ N++ +++ YN +MTLY   G+ EKV  +++E+K +NV+PD +TYN+W+
Sbjct:   141 KAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWM 200

Query:   235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 294
              + AAT +I  V++ ++EM+ D   + DW  Y N+ +IY+ A     AE + L E E   
Sbjct:   201 RALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKA-LQELEMKN 259

Query:   295 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 354
             TQR +  Y FLI LY  LG   ++ +IW+SLR+   K ++  Y+ ++   + L  L    
Sbjct:   260 TQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAE 319

Query:   355 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 391
              +  +W Q+  S +DI   N L+GA++  GL +KANE
Sbjct:   320 TLFKEW-QANCSTYDIRIVNVLIGAYAQEGLIQKANE 355

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 114/348 (32%), Positives = 189/348 (54%)

Query:    53 DGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISE 112
             D  D L+ R+ R   P  S   V+  W+ +GN    SEL  I+K LRK  R+ HAL+IS+
Sbjct:    35 DPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISD 94

Query:   113 WMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW 172
             WM  H+   +S+ D A R+DL+ KV G+   E++FE +P+  +    Y ALL+ YA  K 
Sbjct:    95 WMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKV 154

Query:   173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 232
               KAE++F+ +K+       L YN M+ LY+  G+   V  ++ E++ + V PDIFT N 
Sbjct:   155 LHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNT 214

Query:   233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 292
              + + +   +++ ++KFL     D G   DW  Y +  N YI A  L       L ++E+
Sbjct:   215 RLHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAG-LTEKALEMLRKSEQ 273

Query:   293 SIT-QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 351
              +  Q++   Y+ L+  Y   G K+++ ++W SL        +  YI ++S+ L +  ++
Sbjct:   274 MVNAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIE 332

Query:   352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 399
             EV +I+++W ++  S FDI   + L+  +   G+ EKA E   +L+QK
Sbjct:   333 EVEKIMEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQK 379

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 105/321 (32%), Positives = 177/321 (55%)

Query:    64 RISL---PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE- 119
             +ISL   P+  A +V+ +W   G + T  EL  ++KELRK +R   ALE+ +WM    E 
Sbjct:    72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGER 131

Query:   120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL 179
             F LS SD A ++DL+ KV GI   E +F  LP + K    Y +LL+ Y  AK  EKAE L
Sbjct:   132 FRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEAL 191

Query:   180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 239
                ++    + + L +N MMTLYM++ + +KV  +V E+K+K++  DI++YN+W+SSC +
Sbjct:   192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251

Query:   240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 299
               ++++++    +M  D     +W  +  +  +YI       AE + L + E  IT R  
Sbjct:   252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDA-LRKVEARITGRNR 310

Query:   300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 359
             I Y +L+ LY  LGNK ++ ++W   +     + +  Y  ++SS + +G ++   ++ ++
Sbjct:   311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370

Query:   360 WKQSATSDFDISACNRLLGAF 380
             W     S +D    N L+ A+
Sbjct:   371 WLP-VKSSYDPRIPNLLMNAY 390

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 110/358 (30%), Positives = 188/358 (52%)

Query:    50 SNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALE 109
             +N   K  L S+I  +  PK S    +Q WV  G + +V+EL  I+ +LR+ +R+ HALE
Sbjct:    19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALE 78

Query:   110 ISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG 169
             +S+WM      V S +++A  +DL+ +V+G  + E YFE L    K  +TY ALL+ Y  
Sbjct:    79 VSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVR 138

Query:   170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT 229
              +  EK+   FE++K+     ++L YN +M LY ++GQ EKV  V+EE+K +NV PD ++
Sbjct:   139 QQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYS 198

Query:   230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 289
             Y + I++  A  +++++   L +M      + DW  Y      YI       A    L  
Sbjct:   199 YRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVE-LLKM 257

Query:   290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 349
             +E  + ++    Y+ LI LYA LG K ++ ++W   +   ++  +++Y+ +L S + +  
Sbjct:   258 SENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDA 317

Query:   350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 407
             L E  E++ +WK S    +D    N ++  +    + EKA      L ++  A T  S
Sbjct:   318 LVEAEEVLTEWKSSGNC-YDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 101/348 (29%), Positives = 184/348 (52%)

Query:    57 DLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT 116
             +L  ++  +S+   +    + +++ EG      +L    K LRK +R +HA EI +WM  
Sbjct:    72 ELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEK 131

Query:   117 HKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEK 175
              K    S SD+A  +DL+ K  G+ + E YF  L  SAK  + TY AL++ Y      EK
Sbjct:   132 RK-MTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEK 190

Query:   176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 235
             A+  FE + + N   N+L +N MM++YM + Q EKV ++V+ +K++ + P   TY++W+ 
Sbjct:   191 AKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQ 250

Query:   236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 295
             SC +  ++D ++K +DEM  DS     W  + NL  IY T + L     S L   E+ + 
Sbjct:   251 SCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIY-TKAGLYEKADSALKSMEEKMN 309

Query:   296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 355
                  ++ FL+ LYAG+    ++ ++W+SL+  + ++ + +Y+ +L +   LG L  + +
Sbjct:   310 PNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKK 369

Query:   356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 403
             I  +W+    + +D+   N  +  +    + E+A +     ++K+  P
Sbjct:   370 IFTEWESKCWA-YDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGP 416

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 99/314 (31%), Positives = 164/314 (52%)

Query:    76 IQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMT 135
             + ++V EG      +L    K+LRK ++ + ALEI EWM   KE   + SD+A R++L+ 
Sbjct:    60 LNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWM-ERKEIAFTGSDHAIRLNLIA 118

Query:   136 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 195
             K  G+ + E YF  L  S K   TY +LL+ Y   K   KA+  FE +   N   N+L +
Sbjct:   119 KSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPF 178

Query:   196 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 255
             N +M +YM +GQ EKV  +V  +K K++ P   TY++WI SC +  ++D V+K LDEM  
Sbjct:   179 NNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEMKA 238

Query:   256 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 315
             +  G   W  + NL  IYI       AE + L   E ++       Y FLI LY G+ N 
Sbjct:   239 EGEGIFSWNTFANLAAIYIKVGLYGKAEEA-LKSLENNMNPDVRDCYHFLINLYTGIANA 297

Query:   316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 375
              ++ ++W  L+     + + +Y+ +L +   L  +  V ++  +W+ +  + +D+   N 
Sbjct:   298 SEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWT-YDMRMANV 356

Query:   376 LLGAFSDVGLTEKA 389
              + ++    + E+A
Sbjct:   357 AISSYLKQNMYEEA 370

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.9e-36, P = 3.9e-36
 Identities = 95/319 (29%), Positives = 166/319 (52%)

Query:    75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM 134
             V+++W  +GNQ   S +R I+K+LR S +   AL++SEWM   K   L   D+A R+ L+
Sbjct:    55 VLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLI 114

Query:   135 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNAL 193
               V G+   E++FE +P +A+    YT+LL+ YA +  T  KAE  F++++   L    +
Sbjct:   115 ENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPV 174

Query:   194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 253
              YN MM+LY ++   EKV  ++ E+K  +V  D  T N  +   +A  ++ +++KFL++ 
Sbjct:   175 PYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKW 234

Query:   254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT-YDFLIILYAGL 312
                 G   +W   +++   Y+ A     A    L   E+ + Q+   + YD L+ LY   
Sbjct:   235 EGIHGIKLEWHTTLDMAKAYLRARSSGKA-MKMLRLTEQLVDQKSLKSAYDHLMKLYGEA 293

Query:   313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 372
             GN++++ ++WK  +    +  +  Y  ++ S L +  +    EI   W +S   +FD   
Sbjct:   294 GNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVW-ESLPLEFDHRI 352

Query:   373 CNRLLGAFSDVGLTEKANE 391
                L   + D G+TEKA +
Sbjct:   353 PTMLASGYRDRGMTEKAEK 371

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B59	PP372_ARATH	No assigned EC number	0.5811	0.9730	0.9706	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVII.269.1 hypothetical protein (355 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-05

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 238
           + + YN ++  Y   G+VE+   +  E+K++ + P+++TY++ I    
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 127 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS 186
           +A  +D   K F I    R  +G+ L   +   Y++L+   + AK  +KA EL+E +K  
Sbjct: 661 HAGDLD---KAFEILQDARK-QGIKLGTVS---YSSLMGACSNAKNWKKALELYEDIKSI 713

Query: 187 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 237
            L       N ++T      Q+ K   V+ E+KR  + P+  TY++ + + 
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764

Length = 1060

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.64
PRK14574	822	hmsH outer membrane protein; Provisional	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.62
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
KOG1126	638	consensus DNA-binding cell division cycle control	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
KOG2076	895	consensus RNA polymerase III transcription factor	99.52
KOG2076	895	consensus RNA polymerase III transcription factor	99.51
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.49
PF13041	50	PPR_2: PPR repeat family	99.47
PRK12370	553	invasion protein regulator; Provisional	99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
PRK12370	553	invasion protein regulator; Provisional	99.45
PF13041	50	PPR_2: PPR repeat family	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.4
KOG2003	840	consensus TPR repeat-containing protein [General f	99.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.38
KOG1129	478	consensus TPR repeat-containing protein [General f	99.36
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.33
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.33
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.27
KOG1129	478	consensus TPR repeat-containing protein [General f	99.27
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.22
KOG2003	840	consensus TPR repeat-containing protein [General f	99.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
PRK11189	296	lipoprotein NlpI; Provisional	99.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.08
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.02
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.96
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.96
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.92
PF12854	34	PPR_1: PPR repeat	98.89
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.89
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.85
PF12854	34	PPR_1: PPR repeat	98.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.84
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.81
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.78
PLN02789	320	farnesyltranstransferase	98.77
PLN02789	320	farnesyltranstransferase	98.76
PRK04841	903	transcriptional regulator MalT; Provisional	98.75
KOG1125	579	consensus TPR repeat-containing protein [General f	98.73
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.72
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.72
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.65
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.64
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.64
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.62
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.58
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.54
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.51
PRK15359	144	type III secretion system chaperone protein SscB;	98.51
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.49
PRK04841	903	transcriptional regulator MalT; Provisional	98.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.48
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.47
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.47
PRK15359	144	type III secretion system chaperone protein SscB;	98.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.43
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.4
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.4
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.37
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.18
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.16
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.15
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.14
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.1
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.08
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.07
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.07
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.06
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.06
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.98
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.97
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.95
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.88
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.88
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.87
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.74
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.66
KOG0553	304	consensus TPR repeat-containing protein [General f	97.64
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.6
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.57
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.56
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.55
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.51
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.47
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.47
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.45
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.44
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.34
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.33
PF12688	120	TPR_5: Tetratrico peptide repeat	97.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.28
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.28
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.22
PF12688	120	TPR_5: Tetratrico peptide repeat	97.2
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.19
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.18
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.04
KOG0553	304	consensus TPR repeat-containing protein [General f	97.04
PRK10803	263	tol-pal system protein YbgF; Provisional	96.98
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.94
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.89
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.85
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.85
PRK10803	263	tol-pal system protein YbgF; Provisional	96.79
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.71
KOG3941	406	consensus Intermediate in Toll signal transduction	96.71
PF13371	73	TPR_9: Tetratricopeptide repeat	96.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.7
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.57
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.43
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.43
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.38
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.24
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.23
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.19
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.11
PRK15331	165	chaperone protein SicA; Provisional	95.96
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.9
PRK15331	165	chaperone protein SicA; Provisional	95.89
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.89
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.78
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.75
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.63
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.6
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.34
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.14
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.11
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.08
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.03
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.01
PRK11906	458	transcriptional regulator; Provisional	94.72
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.7
KOG1585	308	consensus Protein required for fusion of vesicles	94.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.65
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.64
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.61
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.55
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.51
KOG3941	406	consensus Intermediate in Toll signal transduction	94.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.41
PF13428	44	TPR_14: Tetratricopeptide repeat	94.23
PF13428	44	TPR_14: Tetratricopeptide repeat	94.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.18
PF13512	142	TPR_18: Tetratricopeptide repeat	94.17
PRK11906	458	transcriptional regulator; Provisional	94.13
KOG4555	175	consensus TPR repeat-containing protein [Function	94.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.93
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.62
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.6
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.54
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.29
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.29
PF13512	142	TPR_18: Tetratricopeptide repeat	93.28
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.08
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.87
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.65
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.21
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.04
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.93
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.88
KOG4555	175	consensus TPR repeat-containing protein [Function	91.79
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.73
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.98
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.77
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.32
PF13431	34	TPR_17: Tetratricopeptide repeat	90.26
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.21
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.96
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.72
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.52
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	89.44
PF13431	34	TPR_17: Tetratricopeptide repeat	89.37
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.37
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.7
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.66
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.55
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.0
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.67
COG4105	254	ComL DNA uptake lipoprotein [General function pred	87.49
KOG1585	308	consensus Protein required for fusion of vesicles	87.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.15
PF09477	116	Type_III_YscG: Bacterial type II secretion system	86.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.8
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.69
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.17
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.83
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.82
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	85.64
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.37
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.23
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.98
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	83.69
PF13929	292	mRNA_stabil: mRNA stabilisation	83.45
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.88
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	82.32
PRK09687	280	putative lyase; Provisional	82.08
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	81.73
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	81.19
KOG4648	536	consensus Uncharacterized conserved protein, conta	81.0
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	80.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	80.57
KOG3364	149	consensus Membrane protein involved in organellar	80.45

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.9e-58  Score=453.26  Aligned_cols=354  Identities=16%  Similarity=0.132  Sum_probs=335.0

Q ss_pred             CCCCcccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 015370           36 SSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMV  115 (408)
Q Consensus        36 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  115 (408)
                      |+..+|+.+|..|  .+             ..+.+.|.+++++|.+.|..||..+|+.+|.+|++.|++++|.++|++|.
T Consensus       435 pd~~Tyn~LL~a~--~k-------------~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~  499 (1060)
T PLN03218        435 PTLSTFNMLMSVC--AS-------------SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV  499 (1060)
T ss_pred             CCHHHHHHHHHHH--Hh-------------CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            5666666666554  11             23445678889999999999999999999999999999999999999999


Q ss_pred             hccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--CCCCCC
Q 015370          116 THKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEELFERVKQ--SNLSFN  191 (408)
Q Consensus       116 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~p~  191 (408)
                      +.| +.||..+|+.+|.+|++.|++++|.++|++|...  .||..+|+.||.+|++.|++++|.++|++|..  .|+.||
T Consensus       500 ~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD  578 (1060)
T PLN03218        500 NAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD  578 (1060)
T ss_pred             HcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence            998 8999999999999999999999999999999776  49999999999999999999999999999986  679999


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 015370          192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN  271 (408)
Q Consensus       192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  271 (408)
                      ..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++++.
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~  657 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVD  657 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999994 99999999999999


Q ss_pred             HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 015370          272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK  351 (408)
Q Consensus       272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  351 (408)
                      +|++.|++++|.+ ++..|.+.+..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus       658 a~~k~G~~eeA~~-l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        658 VAGHAGDLDKAFE-ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP  736 (1060)
T ss_pred             HHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370          352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG  408 (408)
Q Consensus       352 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  408 (408)
                      +|.++|++|.+.| ..||..+|++|+.+|++.|++++|.+++++|.+.|+.||..||
T Consensus       737 eAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty  792 (1060)
T PLN03218        737 KALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC  792 (1060)
T ss_pred             HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            9999999999987 6899999999999999999999999999999999999998765

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.2e-58  Score=454.01  Aligned_cols=363  Identities=13%  Similarity=0.104  Sum_probs=340.5

Q ss_pred             ceeeeeccCCCCCcccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHH
Q 015370           27 ECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKH  106 (408)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  106 (408)
                      ..+...|+.||..+|+.+|.+|  .+.+.             .+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus       461 ~~M~~~Gl~pD~~tynsLI~~y--~k~G~-------------vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        461 RLVQEAGLKADCKLYTTLISTC--AKSGK-------------VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHH--HhCcC-------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            3445789999999999999997  44333             34677788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370          107 ALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFER  182 (408)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~  182 (408)
                      |+++|+.|.+.| +.||..+|+.+|.+|++.|++++|.++|++|...    .||..+|++||.+|++.|++++|.++|++
T Consensus       526 Al~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        526 AFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999998 9999999999999999999999999999999652    58999999999999999999999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370          183 VKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD  262 (408)
Q Consensus       183 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  262 (408)
                      |.+.|++|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.|+
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd  683 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLG  683 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 499999


Q ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 015370          263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS  342 (408)
Q Consensus       263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  342 (408)
                      ..+|++||.+|++.|++++|.+ ++++|...+..||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~-lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALE-LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhc
Q 015370          343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD----V-------------------GLTEKANEFHMLLLQK  399 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~a~~~~~~m~~~  399 (408)
                      +|++.|++++|.++|++|.+.| +.||..+|++|+..|.+    +                   +..++|..+|++|++.
T Consensus       763 a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~  841 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA  841 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence            9999999999999999999987 78999999999976542    1                   1246799999999999


Q ss_pred             CCCCCCCCC
Q 015370          400 NCAPTNASG  408 (408)
Q Consensus       400 g~~p~~~ty  408 (408)
                      |+.||..||
T Consensus       842 Gi~Pd~~T~  850 (1060)
T PLN03218        842 GTLPTMEVL  850 (1060)
T ss_pred             CCCCCHHHH
Confidence            999998876

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-52  Score=419.43  Aligned_cols=368  Identities=13%  Similarity=0.114  Sum_probs=301.0

Q ss_pred             ceeeeeccCCCCCcccccccccccCCCCcchHHHHHhhhcC------------------CCCcHHHHHHHHHHcCCCCCh
Q 015370           27 ECFFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISL------------------PKRSATNVIQRWVSEGNQATV   88 (408)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~------------------~~~~a~~~l~~~~~~g~~~~~   88 (408)
                      ..+.+.|+.||+.++|++|++|  .+++..+.+.++|..-.                  ..+.|.++|++|.+.|+.||.
T Consensus       211 ~~~~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~  288 (857)
T PLN03077        211 AHVVRFGFELDVDVVNALITMY--VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL  288 (857)
T ss_pred             HHHHHcCCCcccchHhHHHHHH--hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence            3445779999999999999999  88888777777776422                  335678999999999999999


Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA  168 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~  168 (408)
                      .+|+.++.+|++.|+++.+.+++..|.+.| +.||..+|+.++.+|++.|++++|.++|++|..  ||..+||++|.+|+
T Consensus       289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~  365 (857)
T PLN03077        289 MTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYE  365 (857)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHH
Confidence            999999999999999999999999999998 999999999999999999999999999999985  89999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                      +.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+++|++|++.|++++|.+
T Consensus       366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      +|++|.+     +|..+|++++.+|++.|+.++|.. +|.+|.. +..||..||+.++.+|++.|+++.+.+++..|.+.
T Consensus       446 vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~-lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~  518 (857)
T PLN03077        446 VFHNIPE-----KDVISWTSIIAGLRLNNRCFEALI-FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT  518 (857)
T ss_pred             HHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHH-HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence            9999876     467788888888888888888888 8888865 46778888877777777777777777776666666


Q ss_pred             cCCCChh------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          329 KQKMTSR------------------------------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       329 ~~~p~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      |+.+|..                              +|+++|.+|++.|+.++|.++|++|.+.| ..||..||+.++.
T Consensus       519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~  597 (857)
T PLN03077        519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLC  597 (857)
T ss_pred             CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHH
Confidence            6655544                              45555555555555555555555555544 4455555555555


Q ss_pred             HHHhcCChHHHHHHHHHHH-hcCCCCCCCC
Q 015370          379 AFSDVGLTEKANEFHMLLL-QKNCAPTNAS  407 (408)
Q Consensus       379 ~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t  407 (408)
                      +|.+.|++++|.++|++|. +.|+.|+..|
T Consensus       598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~  627 (857)
T PLN03077        598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKH  627 (857)
T ss_pred             HHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence            5555555555555555555 4455555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.7e-52  Score=406.70  Aligned_cols=355  Identities=16%  Similarity=0.142  Sum_probs=314.7

Q ss_pred             eeeeccCCCCCcccccccccccCCCCcchHHHHHhhhc------------------CCCCcHHHHHHHHHHcCCCCChhh
Q 015370           29 FFYSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRIS------------------LPKRSATNVIQRWVSEGNQATVSE   90 (408)
Q Consensus        29 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------------------~~~~~a~~~l~~~~~~g~~~~~~~   90 (408)
                      +...|+.||+.++|.+|+.|  .+++..+-+.++|..-                  ...+.|.++|++|.+.|..|+..+
T Consensus       149 m~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t  226 (697)
T PLN03081        149 VESSGFEPDQYMMNRVLLMH--VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT  226 (697)
T ss_pred             HHHhCCCcchHHHHHHHHHH--hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence            34668889999999999888  7777666666666532                  234567888888888888888888


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcC
Q 015370           91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGA  170 (408)
Q Consensus        91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~  170 (408)
                      |+.++.+|++.|+.+.+.+++..+.+.| +.||..+|+.++++|++.|++++|.++|++|..  +|+.+||+||.+|++.
T Consensus       227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~  303 (697)
T PLN03081        227 FVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALH  303 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhC
Confidence            8888888888888888888888888887 889999999999999999999999999999985  7999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370          171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      |++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|
T Consensus       304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf  383 (697)
T PLN03081        304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF  383 (697)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-cc
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-TK  329 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~  329 (408)
                      ++|.+     ||..+||+||.+|++.|+.++|.+ ++++|.+.+..||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus       384 ~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~-lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        384 DRMPR-----KNLISWNALIAGYGNHGRGTKAVE-MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             HhCCC-----CCeeeHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence            99875     588899999999999999999999 999999999999999999999999999999999999999976 58


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +.|+..+|++++++|++.|++++|.+++++|    ...|+..+|++|+.+|...|+++.|..+++++.+
T Consensus       458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             CCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            9999999999999999999999999998876    2567777777777777766666666666666643

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.5e-51  Score=408.87  Aligned_cols=361  Identities=14%  Similarity=0.072  Sum_probs=332.8

Q ss_pred             eeccCCCCCcccccccccccCCCCcchHHHHHhhhc------------------CCCCcHHHHHHHHHHcCCCCChhhHH
Q 015370           31 YSRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRIS------------------LPKRSATNVIQRWVSEGNQATVSELR   92 (408)
Q Consensus        31 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------------------~~~~~a~~~l~~~~~~g~~~~~~~~~   92 (408)
                      ..|+.+++.++|++|..|  .+++..+-+.++|..-                  ...+.|.++|++|...|+.||..||+
T Consensus       114 ~~~~~~~~~~~n~li~~~--~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~  191 (857)
T PLN03077        114 SSHPSLGVRLGNAMLSMF--VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP  191 (857)
T ss_pred             HcCCCCCchHHHHHHHHH--HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence            456677778888888887  6666655555555432                  23456788999999999999999999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW  172 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  172 (408)
                      .++++|+..+++..+.+++..|.+.| +.||..+|+.++.+|++.|++++|.++|++|+.  ||..+||++|.+|++.|+
T Consensus       192 ~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~  268 (857)
T PLN03077        192 CVLRTCGGIPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGE  268 (857)
T ss_pred             HHHHHhCCccchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCC
Confidence            99999999999999999999999987 899999999999999999999999999999985  899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE  252 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  252 (408)
                      +++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++
T Consensus       269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~  348 (857)
T PLN03077        269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR  348 (857)
T ss_pred             HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 015370          253 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM  332 (408)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  332 (408)
                      |..     ||..+|++++.+|++.|++++|.+ ++.+|.+.+..||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus       349 m~~-----~d~~s~n~li~~~~~~g~~~~A~~-lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  422 (857)
T PLN03077        349 MET-----KDAVSWTAMISGYEKNGLPDKALE-TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS  422 (857)
T ss_pred             CCC-----CCeeeHHHHHHHHHhCCCHHHHHH-HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence            975     688899999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370          333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG  408 (408)
Q Consensus       333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  408 (408)
                      +..+|+.||++|++.|++++|.++|++|.     .+|..+|+++|.+|++.|+.++|.++|++|.+ ++.||..||
T Consensus       423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~  492 (857)
T PLN03077        423 YVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL  492 (857)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence            99999999999999999999999999974     46888999999999999999999999999975 689998875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-51  Score=399.23  Aligned_cols=329  Identities=12%  Similarity=0.133  Sum_probs=286.2

Q ss_pred             cCCCCcHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHH
Q 015370           66 SLPKRSATNVIQRWVSEG-NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGE  144 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  144 (408)
                      ....+.|.++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.| +.||..+|+.++.+|++.|++++|.
T Consensus       100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~  178 (697)
T PLN03081        100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDAR  178 (697)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHH
Confidence            345678999999998765 78999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChh-------------------------------
Q 015370          145 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL-------------------------------  193 (408)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------------------------------  193 (408)
                      ++|++|..  ||..+||+++.+|++.|++++|+++|++|.+.|+.||..                               
T Consensus       179 ~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        179 RLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             HHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence            99999986  899999999999999999999999999998877666554                               


Q ss_pred             ----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 015370          194 ----MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL  269 (408)
Q Consensus       194 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  269 (408)
                          +||+|+.+|++.|++++|.++|++|..    +|..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|+++
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~l  331 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIM  331 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Confidence                456677778888888888888888754    5778888888888888888888888888887 4888888888888


Q ss_pred             HHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370          270 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH  349 (408)
Q Consensus       270 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  349 (408)
                      +.+|++.|++++|.+ ++..|.+.+..||..+|+.||.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|+
T Consensus       332 l~a~~~~g~~~~a~~-i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~  406 (697)
T PLN03081        332 IRIFSRLALLEHAKQ-AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR  406 (697)
T ss_pred             HHHHHhccchHHHHH-HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence            888888888888888 88888888888888888888888888888888888888875    4688888888888888888


Q ss_pred             HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCCCCC
Q 015370          350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPTNASG  408 (408)
Q Consensus       350 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty  408 (408)
                      .++|.++|++|.+.| +.||..||++++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|
T Consensus       407 ~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y  465 (697)
T PLN03081        407 GTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY  465 (697)
T ss_pred             HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence            888888888888876 678888888888888888888888888888875 5888888776

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.4e-23  Score=192.98  Aligned_cols=302  Identities=12%  Similarity=0.049  Sum_probs=256.3

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-----CHHHHHHHHHHHH
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-----TSETYTALLHLYA  168 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~ll~~~~  168 (408)
                      ....+...|++++|++.|+++.+.+  +.+..++..+...+...|++++|..+++.+...++     +...+..+...|.
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3445678899999999999999864  44567889999999999999999999998877532     1357889999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNID  244 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~  244 (408)
                      +.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++.    ..+..+...+.+.|+++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999864 457889999999999999999999999999986644332    24556777888999999


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      +|...|+++.+.  .+.+...+..+...|.+.|++++|.+ .+.++....+.....+++.++.+|...|++++|.+.+++
T Consensus       198 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        198 AARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIE-ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             HHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999873  34556778889999999999999999 999988765544456788999999999999999999999


Q ss_pred             HHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 015370          325 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       325 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~  401 (408)
                      +.+.  .|+...+..++..+.+.|++++|..+++++.+.   .|+...++.++..+..   .|+.+++..++++|.+.++
T Consensus       275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~  349 (389)
T PRK11788        275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL  349 (389)
T ss_pred             HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence            8876  466667788999999999999999999999875   4788899988888775   5689999999999999998


Q ss_pred             CCCCC
Q 015370          402 APTNA  406 (408)
Q Consensus       402 ~p~~~  406 (408)
                      .|++.
T Consensus       350 ~~~p~  354 (389)
T PRK11788        350 KRKPR  354 (389)
T ss_pred             hCCCC
Confidence            88764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.92  E-value=2e-21  Score=197.77  Aligned_cols=314  Identities=12%  Similarity=0.032  Sum_probs=189.8

Q ss_pred             CcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370           70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG  149 (408)
Q Consensus        70 ~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  149 (408)
                      +.|..+++.+.+. .+.+...|..+...+...|++++|++.|+.+.+..  +.+...+..+..++.+.|++++|..+|++
T Consensus       584 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  660 (899)
T TIGR02917       584 KKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKR  660 (899)
T ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444432 23445556666666666666666666666665542  33445555555666666666666666665


Q ss_pred             CCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370          150 LPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF  228 (408)
Q Consensus       150 ~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  228 (408)
                      +.... .+..++..+...+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|...|+.+...+  |+..
T Consensus       661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~  737 (899)
T TIGR02917       661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ  737 (899)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence            54442 235566666666666666666666666666554 3455566666666666666666666666666543  3334


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL  308 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  308 (408)
                      ++..+..++.+.|++++|.+.++++.+.  .+.+...+..+...|.+.|++++|.. .++++.+..+ .+...++.+...
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p-~~~~~~~~l~~~  813 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIK-HYRTVVKKAP-DNAVVLNNLAWL  813 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHH
Confidence            5555666666666666666666666652  34555666666666666666666666 6666655543 355566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015370          309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEK  388 (408)
Q Consensus       309 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  388 (408)
                      +...|+ .+|+.++++....... +...+..+...+.+.|++++|..+++++.+.+  +.+..++..+..++.+.|++++
T Consensus       814 ~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~  889 (899)
T TIGR02917       814 YLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAE  889 (899)
T ss_pred             HHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHH
Confidence            666666 5666666666554221 33445556666777777777777777777654  2366667777777777777777


Q ss_pred             HHHHHHHHH
Q 015370          389 ANEFHMLLL  397 (408)
Q Consensus       389 a~~~~~~m~  397 (408)
                      |.+++++|+
T Consensus       890 A~~~~~~~~  898 (899)
T TIGR02917       890 ARKELDKLL  898 (899)
T ss_pred             HHHHHHHHh
Confidence            777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.91  E-value=2.2e-20  Score=190.18  Aligned_cols=298  Identities=13%  Similarity=0.077  Sum_probs=155.3

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~  168 (408)
                      .+..+...+...|++++|.+.|+.+.+..  +.+...+..+...+.+.|+.++|..+|+++.... .+...+..++..+.
T Consensus       501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  578 (899)
T TIGR02917       501 AAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL  578 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence            33344444444444444444444444432  2233444444444444455555555444443321 23444444555555


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                      +.|++++|..+++++.+.. +.+..+|..+...|...|++++|...|+.+.+... .+...+..+..++...|++++|..
T Consensus       579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  656 (899)
T TIGR02917       579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAIT  656 (899)
T ss_pred             HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555554432 33445555555555555555555555555554321 234445555555555555555555


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      +++++.+.  .+.+...+..++..+...|++++|.+ ++..+....+ .+...+..+...+...|++++|.+.|+.+...
T Consensus       657 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  732 (899)
T TIGR02917       657 SLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKK-IAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR  732 (899)
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            55555542  23344555555555555555555555 5555444432 24445555555666666666666666655554


Q ss_pred             cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      +  |+..++..+..++.+.|++++|.+.++++.+..  +.+...+..+...|.+.|++++|.+.|+++.+.
T Consensus       733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            3  333455555666666666666666666665543  345556666666666666666666666666653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=4.6e-20  Score=169.62  Aligned_cols=296  Identities=13%  Similarity=0.023  Sum_probs=242.9

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHhhcChHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS---DSDYATRIDLMTKVFGIHS  142 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~  142 (408)
                      ....+.|...++++.+.+ +.+..++..+...+...|++++|.++++.+...+ ..++   ...+..+...+.+.|++++
T Consensus        48 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         48 NEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             cCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            456677999999998863 4567789999999999999999999999998754 1121   2567888999999999999


Q ss_pred             HHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          143 GERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEE  217 (408)
Q Consensus       143 a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~  217 (408)
                      |..+|+++... +.+..+++.++..+.+.|++++|.+.++.+.+.+..++    ...+..+...+.+.|++++|...|++
T Consensus       126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  205 (389)
T PRK11788        126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK  205 (389)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999875 45688999999999999999999999999988753322    22456778888999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC
Q 015370          218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR  297 (408)
Q Consensus       218 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  297 (408)
                      +.+... .+...+..+...+.+.|++++|.++++++.+. .......+++.++.+|.+.|++++|.. .+..+.+..  |
T Consensus       206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~-~l~~~~~~~--p  280 (389)
T PRK11788        206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLE-FLRRALEEY--P  280 (389)
T ss_pred             HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC--C
Confidence            987642 24667888889999999999999999999873 222224568899999999999999999 888887764  4


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM---LGHLKEVGEIIDQWKQSATSDFDIS  371 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~  371 (408)
                      +...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..++++|.+.+ +.|+..
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~  354 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR  354 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence            5556688999999999999999999988776  6888899888887775   558999999999999865 344443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=2.2e-18  Score=166.63  Aligned_cols=328  Identities=11%  Similarity=-0.008  Sum_probs=264.8

Q ss_pred             HHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhh
Q 015370           58 LKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKV  137 (408)
Q Consensus        58 l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  137 (408)
                      +...... ..+...|..+++...... +-+...+..++.+....|++++|++.++++.+..  +.+...+..+...+...
T Consensus        48 ~~~~~~~-~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         48 FAIACLR-KDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHh-cCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHc
Confidence            3444444 467788888888877763 4456666677788888999999999999999864  45567888888999999


Q ss_pred             cChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          138 FGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE  216 (408)
Q Consensus       138 g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  216 (408)
                      |++++|...|++..... .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            99999999999987764 468889999999999999999999999887764 2334444444 45788999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh----hHHHHHHHHHH
Q 015370          217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN----AESSTLVEAEK  292 (408)
Q Consensus       217 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~  292 (408)
                      .+......++...+..+..++...|++++|...++++...  .+.+...+..+...|...|++++    |.. .++....
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~-~~~~Al~  278 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE-HWRHALQ  278 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH-HHHHHHh
Confidence            9887654445556666678889999999999999999874  45677888899999999999986    788 7888776


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH-H
Q 015370          293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-S  371 (408)
Q Consensus       293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~  371 (408)
                      ..+. +...+..+...+...|++++|...+++....... +...+..+...+.+.|++++|...++++.+..   |+. .
T Consensus       279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~  353 (656)
T PRK15174        279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSK  353 (656)
T ss_pred             hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchH
Confidence            6543 6788999999999999999999999998876432 34556678899999999999999999998754   333 3


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+..+..++...|++++|...|++..+.
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4444677889999999999999998873

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=5.6e-17  Score=156.84  Aligned_cols=298  Identities=9%  Similarity=-0.076  Sum_probs=245.1

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHc
Q 015370           91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAG  169 (408)
Q Consensus        91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~  169 (408)
                      ...++..+.+.|++++|+.+++......  +-+...+..++.+....|++++|...|+++....| +...+..+...+.+
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4457788899999999999999999874  44456666677778889999999999999887754 57889999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370          170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF  249 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  249 (408)
                      .|++++|...+++..... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence            999999999999999864 4567889999999999999999999999887764433 2333333 347889999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 015370          250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK----IDQIWKSL  325 (408)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m  325 (408)
                      ++.+.+. ...++...+..+...+.+.|++++|.. .+.......+. +...+..+...+...|++++    |...|++.
T Consensus       200 ~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        200 ARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQ-TGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            9998774 222344455666788999999999999 88888876543 67788889999999999986    89999988


Q ss_pred             HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          326 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       326 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+.... +...+..+...+.+.|++++|...+++..+..  +.+...+..+..++.+.|++++|...++++.+.
T Consensus       277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            876432 55678889999999999999999999999864  345667888999999999999999999999874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=1.2e-15  Score=147.80  Aligned_cols=321  Identities=7%  Similarity=-0.065  Sum_probs=214.2

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      ...+.|...+++.++  ..|+...|..+..+|.+.|++++|++.++...+..  +.+...|..+..++...|++++|+..
T Consensus       141 ~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~  216 (615)
T TIGR00990       141 KDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLD  216 (615)
T ss_pred             CCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            455677888877665  45677888899999999999999999999998854  34566777788888888888777543


Q ss_pred             HhcC----------------------------------------------------------------------------
Q 015370          147 FEGL----------------------------------------------------------------------------  150 (408)
Q Consensus       147 ~~~~----------------------------------------------------------------------------  150 (408)
                      |...                                                                            
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (615)
T TIGR00990       217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ  296 (615)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence            3211                                                                            


Q ss_pred             ------------------------CCC---CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370          151 ------------------------PLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY  202 (408)
Q Consensus       151 ------------------------~~~---~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  202 (408)
                                              ...   .| +...|+.+...+...|++++|+..|++..+.. +-+..+|..+...+
T Consensus       297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~  375 (615)
T TIGR00990       297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN  375 (615)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence                                    100   01 12344555555666677777777777766653 22345666777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      ...|++++|...|++..+... .+..+|..+...+...|++++|...|++..+.  .+.+...+..+...+.+.|++++|
T Consensus       376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHH
Confidence            777777777777777766432 24566667777777777777777777777762  344566666777777777777777


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh------HHHHHHHHHhcCCHHHHHHH
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN------YICILSSYLMLGHLKEVGEI  356 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~~~~g~~~~A~~~  356 (408)
                      .. .+....+..+ .+...|+.+...+...|++++|.+.|++........+...      ++.....+...|++++|.++
T Consensus       453 ~~-~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~  530 (615)
T TIGR00990       453 MA-TFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL  530 (615)
T ss_pred             HH-HHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            77 6766655432 2556777777777788888888888877665432211111      11112223345788888888


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          357 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      +++..+..  +.+...+..+...+.+.|++++|...|++..+.
T Consensus       531 ~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       531 CEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88776643  234556778888888888888888888887653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.80  E-value=1.6e-15  Score=147.12  Aligned_cols=300  Identities=10%  Similarity=-0.076  Sum_probs=238.7

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~  168 (408)
                      .+......+.+.|++++|++.|++..+   ..|++..|..+..+|.+.|++++|++.++......| +...|..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            355677888999999999999999987   467888999999999999999999999999877654 5789999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCC-----------------------------CCCChhhHHHHHHH------------------
Q 015370          169 GAKWTEKAEELFERVKQSN-----------------------------LSFNALMYNEMMTL------------------  201 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~-----------------------------~~p~~~~~~~li~~------------------  201 (408)
                      ..|++++|+.-|......+                             -+++...+..+...                  
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            9999999987665443211                             01111111111000                  


Q ss_pred             ------------H------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 015370          202 ------------Y------MSVGQVEKVALVVEEIKRKN-VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD  261 (408)
Q Consensus       202 ------------~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  261 (408)
                                  +      ...+++++|.+.|+.....+ ..| +...+..+...+...|++++|...+++..+.  .+.
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~  363 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR  363 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence                        0      11257889999999998765 234 3466777888888999999999999999873  344


Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL  341 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  341 (408)
                      ....|..+...+...|++++|.. .+....+..+ .+...|..+...+...|++++|...|++..+.... +...+..+.
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la  440 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEE-DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG  440 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence            56688899999999999999999 8888876643 36788999999999999999999999998876422 456677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      ..+.+.|++++|+..|++..+..  +.+...|+.+...+...|++++|.+.|++.++.
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            89999999999999999998753  446778889999999999999999999998874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=2.2e-16  Score=141.18  Aligned_cols=329  Identities=13%  Similarity=0.064  Sum_probs=254.5

Q ss_pred             HHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh---------------
Q 015370           60 SRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD---------------  124 (408)
Q Consensus        60 ~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------  124 (408)
                      ..+++.+.....|+..++.+++. .+-.+..|..+..++...|+.+.|.+.|....+.   .|+.               
T Consensus       123 aN~~kerg~~~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~G  198 (966)
T KOG4626|consen  123 ANILKERGQLQDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEG  198 (966)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhc
Confidence            35566566667777777777664 2334666777777777777777777777766653   2332               


Q ss_pred             --------------------HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015370          125 --------------------SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERV  183 (408)
Q Consensus       125 --------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m  183 (408)
                                          ..|+.|...+-..|++..|++.|++.....|+ ...|-.|.+.|...+.+++|...|.+.
T Consensus       199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA  278 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA  278 (966)
T ss_pred             ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence                                23333444444566777777777776666555 677888888888888888888888887


Q ss_pred             HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370          184 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD  262 (408)
Q Consensus       184 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  262 (408)
                      .... +-...++..|...|..+|++|.|...|++..+.  .|+ ...|+.+..++-..|++.+|.+.+.+...  -.+..
T Consensus       279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~h  353 (966)
T KOG4626|consen  279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNH  353 (966)
T ss_pred             HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCcc
Confidence            7653 334667888888888899999999999998874  455 57899999999999999999999999987  34556


Q ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHH
Q 015370          263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICIL  341 (408)
Q Consensus       263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li  341 (408)
                      ....+.|...|...|.+++|.. ++.....-.+. -...+|.|...|-+.|++++|+..|++..+.  +|+ ...|+.+.
T Consensus       354 adam~NLgni~~E~~~~e~A~~-ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmG  429 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATR-LYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMG  429 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHH-HHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcc
Confidence            6778899999999999999999 78777665443 4567889999999999999999999987764  665 45788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      ..|-..|+.+.|.+.+.+.+.-+  +.-...++.|...|...|++.+|..-|++.++  ++||.
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence            99999999999999999998743  22346788999999999999999999999988  77774

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=6.1e-15  Score=152.24  Aligned_cols=324  Identities=10%  Similarity=0.025  Sum_probs=219.0

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHH------------HHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDY------------ATRIDLM  134 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~li~~~  134 (408)
                      ...+.|...+++..+. .+.+...+..+...+.+.|++++|+..|++..+..+-.+....+            ......+
T Consensus       283 g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            4456778888877765 34477888899999999999999999999988754211221112            1224466


Q ss_pred             HhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH--------------
Q 015370          135 TKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM--------------  199 (408)
Q Consensus       135 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li--------------  199 (408)
                      .+.|++++|+..|++..... .+...+..+...+...|++++|++.|++..+.. +.+...+..+.              
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            78899999999999887764 457788888999999999999999999988764 22333333332              


Q ss_pred             ----------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015370          200 ----------------------------TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD  251 (408)
Q Consensus       200 ----------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  251 (408)
                                                  ..+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                        3344578888888888888775432 45666777888888888888888888


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH---------------------------------------
Q 015370          252 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK---------------------------------------  292 (408)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------------------------------  292 (408)
                      ++.+.  .+.+...+..+...+.+.++.++|.. .+..+..                                       
T Consensus       520 ~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~-~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        520 RLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA-HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH-HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            87763  22333333333333333444444433 2222100                                       


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHH
Q 015370          293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA  372 (408)
Q Consensus       293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  372 (408)
                      ...+.+...+..+...+.+.|++++|++.|++..+.... +...+..+...|...|++++|++.++...+..  +.+...
T Consensus       597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~  673 (1157)
T PRK11447        597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNT  673 (1157)
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHH
Confidence            012234445566777777888888888888877766422 45667777888888888888888888776542  234556


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          373 CNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       373 ~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      +..+..++...|++++|.+++++++..
T Consensus       674 ~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        674 QRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            666777778888888888888887764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.76  E-value=1.5e-14  Score=149.32  Aligned_cols=321  Identities=9%  Similarity=-0.018  Sum_probs=221.5

Q ss_pred             CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF  147 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  147 (408)
                      +.+.|...+++..+. .+.+...+..+...+...|++++|++.|++..+..  +.+...+..+...+. .++.++|..++
T Consensus       366 ~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l  441 (1157)
T PRK11447        366 NLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFI  441 (1157)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            445566777776665 34456677788899999999999999999998753  334555555555553 34566777666


Q ss_pred             hcCCCCCC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          148 EGLPLSAK----------TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE  217 (408)
Q Consensus       148 ~~~~~~~~----------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  217 (408)
                      +.+....+          ....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...+++
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~  520 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRR  520 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66543211          12234445566667777777777777776654 33455666677777777777777777777


Q ss_pred             HHhCCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHHHHH
Q 015370          218 IKRKNVVPDIFTYNL--------------------------------------------WISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       218 m~~~g~~p~~~~~~~--------------------------------------------ll~~~~~~g~~~~a~~~~~~~  253 (408)
                      +.+.... +...+..                                            +...+...|+.++|..+++. 
T Consensus       521 al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-  598 (1157)
T PRK11447        521 LAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-  598 (1157)
T ss_pred             HHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence            6653221 2222222                                            22334455556666655541 


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-
Q 015370          254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-  332 (408)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-  332 (408)
                           .+.+...+..+...+.+.|++++|+. .++.+....+. +...+..++..|...|++++|++.++...+.  .| 
T Consensus       599 -----~p~~~~~~~~La~~~~~~g~~~~A~~-~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~  669 (1157)
T PRK11447        599 -----QPPSTRIDLTLADWAQQRGDYAAARA-AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--AND  669 (1157)
T ss_pred             -----CCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence                 23455667788999999999999999 88888877544 7788999999999999999999999987664  34 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCC
Q 015370          333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPT  404 (408)
Q Consensus       333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~  404 (408)
                      +...+..+..++...|++++|.++++++.......|    +...+..+...+...|++++|.+.|++.+. .|+.|+
T Consensus       670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~  746 (1157)
T PRK11447        670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT  746 (1157)
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence            344566678888999999999999999987532222    234566678889999999999999999753 456553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=5.5e-16  Score=138.63  Aligned_cols=305  Identities=13%  Similarity=0.032  Sum_probs=197.4

Q ss_pred             CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHH-HHHH
Q 015370           85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSET-YTAL  163 (408)
Q Consensus        85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~l  163 (408)
                      +.-.++|..+.+.+...|++++|+.+++.+.+..  +-....|..+..++...|+.+.|.+.|.+..+..|+... .+.+
T Consensus       113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l  190 (966)
T KOG4626|consen  113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL  190 (966)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence            3456788889999999999999999999999863  335788999999999999999999998887766665433 3344


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLN  242 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~  242 (408)
                      ...+-..|++++|...|.+.++.. +-=..+|+.|...+-.+|+...|+..|++....  .|+ ...|-.|...|...+.
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~  267 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI  267 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence            455555677777777777766653 112456777777777777777777777776653  343 3456666666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW  322 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  322 (408)
                      ++.|...+.+....  -+.....+..+...|...|.++.|+. .+++..+..+. -...|+.|..++-..|++.+|.+.|
T Consensus       268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~-~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAID-TYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHH-HHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence            66666666665542  23344556666666666666666666 66655544322 2346666666666666666666666


Q ss_pred             HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 015370          323 KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA  402 (408)
Q Consensus       323 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  402 (408)
                      .+....... -..+.+.|...|...|.+++|..+|....+-.  +--...++.|...|-..|++++|+.-|++.+.  |.
T Consensus       344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~  418 (966)
T KOG4626|consen  344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK  418 (966)
T ss_pred             HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence            655543211 23345556666666666666666666655422  11234455666666666666666666666555  44


Q ss_pred             C
Q 015370          403 P  403 (408)
Q Consensus       403 p  403 (408)
                      |
T Consensus       419 P  419 (966)
T KOG4626|consen  419 P  419 (966)
T ss_pred             c
Confidence            4

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=3.3e-14  Score=140.62  Aligned_cols=328  Identities=10%  Similarity=-0.030  Sum_probs=196.4

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .....|.+++...... .+.+...+..+...+...|++++|.++|++..+..  +.+...+..+..++...|++++|...
T Consensus        29 g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         29 GQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4445555555555441 23445557777777777777777877777777653  34455666666777777777777777


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH------------
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL------------  213 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~------------  213 (408)
                      ++++....| +.. +..+..++...|+.++|+..++++.+.. |.+...+..+..++...|+.++|+.            
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~  183 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK  183 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence            777665533 455 7777777777777777777777777764 3344455555555555555444333            


Q ss_pred             ----------------------------------HHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHH
Q 015370          214 ----------------------------------VVEEIKRK-NVVPDIF-TY----NLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       214 ----------------------------------~~~~m~~~-g~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                                                        .++.+.+. ...|+.. .+    ...+.++...|++++|+..|+.+
T Consensus       184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l  263 (765)
T PRK10049        184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL  263 (765)
T ss_pred             HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence                                              33333321 1112211 11    11123445667777888888877


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370          254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ  330 (408)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  330 (408)
                      .+.....|+. ....+...|...|++++|.. .++.+....+..   .......+..++...|++++|.++++.+.....
T Consensus       264 l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P  341 (765)
T PRK10049        264 KAEGQIIPPW-AQRWVASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP  341 (765)
T ss_pred             hccCCCCCHH-HHHHHHHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence            7642111222 11224667777788888887 777665543221   123344555566777888888877777765421


Q ss_pred             -----------CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          331 -----------KMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       331 -----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                                 .|+.   ..+..+...+...|+.++|+++++++....  +.+...+..+...+...|++++|++.+++.
T Consensus       342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a  419 (765)
T PRK10049        342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKA  419 (765)
T ss_pred             ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                       1221   123445666777777777777777777653  345666777777777777777777777777


Q ss_pred             HhcCCCCCC
Q 015370          397 LQKNCAPTN  405 (408)
Q Consensus       397 ~~~g~~p~~  405 (408)
                      ++  +.||.
T Consensus       420 l~--l~Pd~  426 (765)
T PRK10049        420 EV--LEPRN  426 (765)
T ss_pred             Hh--hCCCC
Confidence            66  44654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.74  E-value=5.4e-14  Score=139.06  Aligned_cols=328  Identities=9%  Similarity=0.018  Sum_probs=231.4

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .....|.+.+++..+. .+.+...+..+...+...|++++|+..+++..+..  +.+.. +..+..++...|+.++|+..
T Consensus        63 g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~  138 (765)
T PRK10049         63 KQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRA  138 (765)
T ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence            4445666666666554 34456666777777888888888888888887753  44455 77777778888888888888


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHH----------------------------------------------HHHH
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEK----------------------------------------------AEEL  179 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~----------------------------------------------A~~~  179 (408)
                      ++++....| +...+..+..++...+..++                                              |++.
T Consensus       139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence            887776644 45555555666655555544                                              4444


Q ss_pred             HHHHHhC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          180 FERVKQS-NLSFNAL-MYN----EMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWISSCAATLNIDQVKKFLDE  252 (408)
Q Consensus       180 ~~~m~~~-~~~p~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~  252 (408)
                      ++.+... .-.|+.. .+.    ..+.++...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|+.+|++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence            4444432 1112211 111    1134456789999999999999987643 443 222256789999999999999999


Q ss_pred             HhcCCCCCC--CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc-----------Cc---cchHHHHHHHHHhcCCHH
Q 015370          253 MSCDSGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-----------RQ---WITYDFLIILYAGLGNKD  316 (408)
Q Consensus       253 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~---~~~~~~li~~~~~~~~~~  316 (408)
                      +.+.....+  .......+..++...|++++|.. .+..+....+.           |+   ...+..+...+...|+.+
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~-~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~  376 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESENYPGALT-VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP  376 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH-HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence            876321111  13456677778899999999999 88888766431           12   124456777888999999


Q ss_pred             HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      +|+++++++....+. +...+..+...+...|++++|++.+++.....  +.+...+..+...+.+.|++++|..+++++
T Consensus       377 eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l  453 (765)
T PRK10049        377 QAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDV  453 (765)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999998876432 56677788999999999999999999998854  345667777888899999999999999999


Q ss_pred             HhcCCCCCC
Q 015370          397 LQKNCAPTN  405 (408)
Q Consensus       397 ~~~g~~p~~  405 (408)
                      ++  ..|+.
T Consensus       454 l~--~~Pd~  460 (765)
T PRK10049        454 VA--REPQD  460 (765)
T ss_pred             HH--hCCCC
Confidence            88  55654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.73  E-value=4.3e-14  Score=129.16  Aligned_cols=284  Identities=10%  Similarity=0.055  Sum_probs=223.3

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHH-HHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHH--HHHHHHHcCCCHHHHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYT--ALLHLYAGAKWTEKAE  177 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~A~  177 (408)
                      .|+++.|.+.+....+..   +++.. |.....+..+.|+++.|.+++.++.+..|+.....  .....+...|++++|.
T Consensus        97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            599999998888765542   23333 33334566899999999999999988767754443  3367889999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 015370          178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      +.++++.+.. |-+...+..+...|.+.|++++|..++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999886 557889999999999999999999999999988765333       23344444445556677777888


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ  330 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  330 (408)
                      +.+.+.  .+.++.....+...+...|+.++|.+ ++.+..+.  +++..  -.++.+....++.+++.+..+...+...
T Consensus       253 ~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~-~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        253 KNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQ-IILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence            877652  45688888999999999999999999 88777764  33332  1234444566999999999999887743


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      . |...+..+...+.+.+++++|.+.|+...+.   .|+...|..+...+.+.|+.++|.+++++-...
T Consensus       326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2 4556778999999999999999999999874   588988889999999999999999999987653

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=3.2e-14  Score=122.15  Aligned_cols=240  Identities=15%  Similarity=0.118  Sum_probs=193.6

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      .+..+|.+||.++|+-...+.|.+++++......+.+..+||.+|.+-.-..+    .+++.+|......||..|||+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence            57889999999999999999999999999988888999999999987654333    78899999999999999999999


Q ss_pred             HHHHhcCCHHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc--------cCccchH
Q 015370          235 SSCAATLNIDQ----VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT--------QRQWITY  302 (408)
Q Consensus       235 ~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~  302 (408)
                      .+..+.|+++.    |.+++.+|++ -|+.|+..+|..+|..+++.++..+....++.++.....        +.|...|
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            99999998764    5678889999 599999999999999999998886544325666554321        2244556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcc----CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370          303 DFLIILYAGLGNKDKIDQIWKSLRMTK----QKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR  375 (408)
Q Consensus       303 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  375 (408)
                      ...+..|.+..+.+.|.++-.-+....    +.|+.   .-|.-+..+.|+....+.-..+++.|+-.- .-|+..+...
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~  438 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHH
Confidence            677888889999999988877554321    12221   225568888899999999999999998764 5688888899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          376 LLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       376 li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                      ++++....|.++-.-+++..++..|
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhh
Confidence            9999999999999888888888766

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=9.7e-14  Score=119.27  Aligned_cols=311  Identities=14%  Similarity=0.091  Sum_probs=227.0

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYT  161 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~  161 (408)
                      .+-+..+|..+|.++++--..+.|.+++.+..+.. .+.+..+||.+|.+-+-..+    .+++.+|...  .||..|+|
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence            45678899999999999999999999999988765 68899999999977654433    4555565554  49999999


Q ss_pred             HHHHHHHcCCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC----CHH
Q 015370          162 ALLHLYAGAKWTEK----AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK-VALVVEEIKR----KNVVP----DIF  228 (408)
Q Consensus       162 ~ll~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~  228 (408)
                      +++.+.++.|+++.    |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++..    +.++|    |..
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            99999999998776    46677889999999999999999999998887644 4444444432    22333    456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCCHH---HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSDDWV---KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY  302 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  302 (408)
                      .|..-++.|.+..+.+.|.++..-.....   -+.|+..   -|..+....|+....+.-.. .+..+.-...-|+..+.
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~-~Y~~lVP~~y~p~~~~m  436 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK-WYEDLVPSAYFPHSQTM  436 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccceecCCchhH
Confidence            67788888889999988888877665421   1233322   25677788888888888888 88888888888888888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccC-------------------CCC------------------------------
Q 015370          303 DFLIILYAGLGNKDKIDQIWKSLRMTKQ-------------------KMT------------------------------  333 (408)
Q Consensus       303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------------~p~------------------------------  333 (408)
                      ..++.+....+.++-.-++|..++..|-                   .|+                              
T Consensus       437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r  516 (625)
T KOG4422|consen  437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR  516 (625)
T ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8888888888888888888877776552                   221                              


Q ss_pred             -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          334 -----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN---RLLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       334 -----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                           ....+.+...+.+.|..++|.+++..+.+++..-|-....|   -+++.-.+.++...|..+++-|...+
T Consensus       517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence                 11123444456677888888888887765543334444444   44555566677778888777776554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=2.3e-16  Score=137.79  Aligned_cols=260  Identities=15%  Similarity=0.104  Sum_probs=92.6

Q ss_pred             HHHHHHHhhcChHHHHHHHhc-CCCC-C-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          129 TRIDLMTKVFGIHSGERYFEG-LPLS-A-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       129 ~li~~~~~~g~~~~a~~~~~~-~~~~-~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      .+...+.+.|++++|.+++++ +... + .|...|..+.......++++.|.+.++++...+. -+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            445666677777777777744 3332 2 2455555566666667777777777777776652 245566666666 577


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH
Q 015370          206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS  285 (408)
Q Consensus       206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  285 (408)
                      +++++|.+++...-+..  ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|.+ 
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-  167 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR-  167 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH-
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH-
Confidence            77777777776655432  345556666777777777777777777766543445666777777777777777777777 


Q ss_pred             HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 015370          286 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT  365 (408)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  365 (408)
                      .+++..+..+. |....+.++..+...|+.+++.++++...+.. ..|+..+..+..+|...|+.++|..+|++..+.. 
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            77777666544 55566677777777777777777777666553 3344556677777777788888888888777654 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          366 SDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       366 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                       +.|......+..++...|+.++|.++.++..
T Consensus       245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             -TT-HHHHHHHHHHHT----------------
T ss_pred             -ccccccccccccccccccccccccccccccc
Confidence             4467777777777778888888877776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=9.9e-13  Score=128.29  Aligned_cols=328  Identities=12%  Similarity=0.033  Sum_probs=217.7

Q ss_pred             CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF  147 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  147 (408)
                      ....|...+++.. ............+...+...|++++|+++|+++.+..  +-++..+..++..+...++.++|++.+
T Consensus        83 ~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l  159 (822)
T PRK14574         83 RDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQA  159 (822)
T ss_pred             CcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            3344555555544 1112223333344668888899999999999999875  445677778888899999999999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-------------
Q 015370          148 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV-------------  214 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-------------  214 (408)
                      +++....|+...+-.++..+...++..+|++.++++.+.+ |-+...+..+..+..+.|-...|+++             
T Consensus       160 ~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~  238 (822)
T PRK14574        160 TELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY  238 (822)
T ss_pred             HHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence            9999887877777555555655677767999999999875 33555555555555555444333333             


Q ss_pred             -----------------------------------HHHHHh-CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          215 -----------------------------------VEEIKR-KNVVPDI-----FTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       215 -----------------------------------~~~m~~-~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                                                         ++.+.. .+-.|..     .+..-.+-++...|++.++++.++.+
T Consensus       239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l  318 (822)
T PRK14574        239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM  318 (822)
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence                                               222222 1111221     12223344677788888888888888


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ... +.+.-..+-..+..+|...+++++|.. ++..+.....     .++......|..+|...+++++|..+++.+.+.
T Consensus       319 ~~~-~~~~P~y~~~a~adayl~~~~P~kA~~-l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~  396 (822)
T PRK14574        319 EAE-GYKMPDYARRWAASAYIDRRLPEKAAP-ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ  396 (822)
T ss_pred             hhc-CCCCCHHHHHHHHHHHHhcCCcHHHHH-HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            874 544334466778888888888888888 7777766431     223444567788888888888888888887763


Q ss_pred             cC-----------CCCh--hh-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015370          329 KQ-----------KMTS--RN-YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM  394 (408)
Q Consensus       329 ~~-----------~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  394 (408)
                      -.           .||+  .. +..++..+...|+..+|++.++++....  +-|......+...+...|.+.+|.+.++
T Consensus       397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k  474 (822)
T PRK14574        397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELK  474 (822)
T ss_pred             CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            21           1222  12 3345666777888888888888887754  4577777778888888888888888886


Q ss_pred             HHHhcCCCCCC
Q 015370          395 LLLQKNCAPTN  405 (408)
Q Consensus       395 ~m~~~g~~p~~  405 (408)
                      ....  +.|+.
T Consensus       475 ~a~~--l~P~~  483 (822)
T PRK14574        475 AVES--LAPRS  483 (822)
T ss_pred             HHhh--hCCcc
Confidence            6655  35543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.68  E-value=2.4e-12  Score=128.20  Aligned_cols=319  Identities=11%  Similarity=0.005  Sum_probs=236.6

Q ss_pred             cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHhhcC---hHHHHHH
Q 015370           71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVT-HKEFVLSDSDYATRIDLMTKVFG---IHSGERY  146 (408)
Q Consensus        71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~  146 (408)
                      .+.+.+..|.+. .+-+......+--...+.|+.++|.++|+.... .+.-.++.....-++..|.+.+.   ..++..+
T Consensus       360 ~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  438 (987)
T PRK09782        360 EALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL  438 (987)
T ss_pred             HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence            344444444443 233666666777777899999999999999876 22223444555577788877765   2333222


Q ss_pred             -------------------------HhcCCCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 015370          147 -------------------------FEGLPLS-AK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM  198 (408)
Q Consensus       147 -------------------------~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  198 (408)
                                               +...... ++  +...|..+..++.. ++.++|...+.+.....  |+......+
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l  515 (987)
T PRK09782        439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV  515 (987)
T ss_pred             ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence                                     1111111 34  67788888888887 88899999888887763  565444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370          199 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH  278 (408)
Q Consensus       199 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  278 (408)
                      ...+...|++++|...|+++...  .|+...+..+..++.+.|++++|..++++..+. . ++....+..+.....+.|+
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr  591 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQ  591 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCC
Confidence            55556899999999999998664  344455666778889999999999999999874 2 4444444445555556799


Q ss_pred             hhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID  358 (408)
Q Consensus       279 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  358 (408)
                      +++|.. .+.+..+..+  +...|..+...+.+.|++++|+..+++.....+. +...+..+...+...|+.++|+..++
T Consensus       592 ~~eAl~-~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~  667 (987)
T PRK09782        592 PELALN-DLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLE  667 (987)
T ss_pred             HHHHHH-HHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999 8888876654  4678889999999999999999999998877432 45567778889999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          359 QWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       359 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      +..+..  +-+...+..+..++...|++++|...+++..+  +.|+.
T Consensus       668 ~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~  710 (987)
T PRK09782        668 RAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ  710 (987)
T ss_pred             HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence            998864  34778899999999999999999999999987  45654

>TIGR00540 hemY_coli hemY protein

Probab=99.66  E-value=1.1e-12  Score=120.60  Aligned_cols=292  Identities=10%  Similarity=0.031  Sum_probs=213.9

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChH-HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH--HHHHHHHHHHHcCCCHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLSAKTS--ETYTALLHLYAGAKWTEK  175 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~  175 (408)
                      ...|+++.|.+.+....+.   .|++. .+-....+....|+.+.|.+++.+..+..|+.  ...-.....+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            4579999999999887764   45544 34445678888999999999999976654554  344445888899999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHH
Q 015370          176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC---AATLNIDQVKKFLDE  252 (408)
Q Consensus       176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~  252 (408)
                      |.+.++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.++.+.......-..++   ...+..+++.+.+..
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999986 5577889999999999999999999999999987653332212222222   222333333344444


Q ss_pred             HhcCC--CCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH-HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          253 MSCDS--GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       253 ~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      +.+..  ..+.+...+..+...+...|+.++|.+ ++.+..+..+......+ ..........++.+.+.+.++...+. 
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~-~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE-IIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence            44421  122478889999999999999999999 88888876554332221 22222234457888899998877765 


Q ss_pred             CCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          330 QKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       330 ~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                       .|+..   ...++...+.+.|++++|.+.|+...... ..|+...+..+...+.+.|+.++|.+++++...
T Consensus       329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             45444   45578899999999999999999533322 368888888999999999999999999998644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=9.6e-14  Score=125.72  Aligned_cols=286  Identities=15%  Similarity=0.090  Sum_probs=225.2

Q ss_pred             cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHHHHHcCCCHHHHHH
Q 015370          103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEE  178 (408)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~  178 (408)
                      +..+|+.+|+.+.++  +.-+.+....+..+|...+++++|+++|+.+....    .+.+.|.+.+.-+-+.    -++.
T Consensus       334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence            577899999996665  34555777888899999999999999999988774    4788999998766542    2333


Q ss_pred             HHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370          179 LFE-RVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       179 ~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      .+. ++.+.. +-.+.+|.++.+.|.-+++.+.|++.|++..+.  .| ..++|+.+..-+.....+|.|...|+.....
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            332 333332 446789999999999999999999999999984  45 6789999998899999999999999998763


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh
Q 015370          257 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN  336 (408)
Q Consensus       257 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  336 (408)
                        .+-+...|--+...|.+.++++.|.- .|++..+-.+. +.+....+...+.+.|+.++|++++++......+ |+..
T Consensus       485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~  559 (638)
T KOG1126|consen  485 --DPRHYNAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC  559 (638)
T ss_pred             --CchhhHHHHhhhhheeccchhhHHHH-HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence              23344455568888999999999999 88877766555 6777778888899999999999999987765443 3333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 015370          337 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       337 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      ----+..+...+++++|+..++++++.  .+.+...|-.+...|.+.|+.+.|+.-|--+.+.+-++.
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            333455666789999999999999984  345677888899999999999999998888877554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=2.7e-15  Score=131.03  Aligned_cols=261  Identities=15%  Similarity=0.078  Sum_probs=112.5

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcC
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGA  170 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~  170 (408)
                      .+...+.+.|++++|++++....... .+| ++..|..+.......++++.|.+.++++...++ +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            56788889999999999996654431 134 445555666777889999999999999987743 46667777777 789


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370          171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKF  249 (408)
Q Consensus       171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~  249 (408)
                      +++++|.+++++.-+..  ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998876653  577788899999999999999999999987543 345777888889999999999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      +++..+.  .|.+......++..+...|+.+++.+ ++....+.. +.|...|..+..+|...|+.++|+..|++..+..
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~-~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEARE-ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHH-HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            9999983  45567888899999999999999988 777776665 4466788899999999999999999999987764


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      . .|+.....+.+++.+.|+.++|.++.++..+
T Consensus       245 p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 P-DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-T-HHHHHHHHHHHT-----------------
T ss_pred             c-ccccccccccccccccccccccccccccccc
Confidence            2 2677778899999999999999999887643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=4.3e-12  Score=108.56  Aligned_cols=291  Identities=11%  Similarity=0.050  Sum_probs=236.7

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCCHHHHHHHHHHHHcCCCHHHHHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKTSETYTALLHLYAGAKWTEKAEE  178 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~  178 (408)
                      .|+|.+|.++..+-.+.+  .-....|..-..+.-..|+.+.+-.++.+..+.  +++...+-+........|+.+.|..
T Consensus        97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            589999999999988876  334566777778889999999999999999887  4567778888899999999999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 015370          179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLD  251 (408)
Q Consensus       179 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~  251 (408)
                      -++++.+.+ +-++........+|.+.|++.....++..|.+.|.--|.       .+|..+++-....+..+.-...++
T Consensus       175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            999999886 557889999999999999999999999999999876554       467777777777777777777888


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 015370          252 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK  331 (408)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  331 (408)
                      .....  ...++..-.+++.-+.+.|+.++|.+ +.++..+....|+    -.....+.+.++...-++..+.-.+... 
T Consensus       254 ~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~-~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-  325 (400)
T COG3071         254 NQPRK--LRNDPELVVAYAERLIRLGDHDEAQE-IIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-  325 (400)
T ss_pred             hccHH--hhcChhHHHHHHHHHHHcCChHHHHH-HHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-
Confidence            77763  45566667799999999999999999 7777777766655    1223345667787777777776444322 


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      -++..+..|...|.+.+.+.+|...|+...+   ..|+..+|+.+..++.+.|+..+|.++.++....-..|+.
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~  396 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL  396 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence            1346778899999999999999999998776   4689999999999999999999999999998766555554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.64  E-value=7.8e-12  Score=122.10  Aligned_cols=329  Identities=9%  Similarity=-0.009  Sum_probs=233.7

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .+...|.+.|++..+....-....+ .++..+...|+.++|+..+++....  -.........+...+...|++++|+++
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiel  124 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALAL  124 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4446778888877765322112333 8888899999999999999998732  123334444446688888999999999


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                      |+++....| |...+..++..+...++.++|++.++++....  |+...+-.++..+...++..+|++.++++.+.... 
T Consensus       125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-  201 (822)
T PRK14574        125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-  201 (822)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-
Confidence            999988754 57778888999999999999999999998874  56566644444444566776799999999987432 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHH------------------------------------------------HHHHHHhcCC
Q 015370          226 DIFTYNLWISSCAATLNIDQVK------------------------------------------------KFLDEMSCDS  257 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~------------------------------------------------~~~~~~~~~~  257 (408)
                      +...+..+..++.+.|-...|.                                                .-++.+....
T Consensus       202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~  281 (822)
T PRK14574        202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW  281 (822)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence            4555666666666665433333                                                2333333322


Q ss_pred             CCCCCH-HHH----HHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC--
Q 015370          258 GGSDDW-VKY----VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ--  330 (408)
Q Consensus       258 ~~~~~~-~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--  330 (408)
                      +..|.. ..|    .=.+-++.+.+++.++++ .++.+...+.+....+-..+.++|...+++++|+.+|+.+.....  
T Consensus       282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~-~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~  360 (822)
T PRK14574        282 GKDPEAQADYQRARIDRLGALLVRHQTADLIK-EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT  360 (822)
T ss_pred             cCCCccchHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence            222221 111    124456788899999999 899998877654455777899999999999999999999866431  


Q ss_pred             ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------------CCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 015370          331 ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT------------SDFDI-SACNRLLGAFSDVGLTEKANEFHM  394 (408)
Q Consensus       331 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~-~~~~~li~~~~~~g~~~~a~~~~~  394 (408)
                         .++......|.-+|...+++++|..+++++.+...            ..||- ..+..++..+.-.|+..+|.+.++
T Consensus       361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le  440 (822)
T PRK14574        361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE  440 (822)
T ss_pred             cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               22333356799999999999999999999987321            12233 234556777889999999999999


Q ss_pred             HHHhcCCCCC
Q 015370          395 LLLQKNCAPT  404 (408)
Q Consensus       395 ~m~~~g~~p~  404 (408)
                      ++..  ..|.
T Consensus       441 ~l~~--~aP~  448 (822)
T PRK14574        441 DLSS--TAPA  448 (822)
T ss_pred             HHHH--hCCC
Confidence            9976  4443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=5.2e-12  Score=105.04  Aligned_cols=289  Identities=12%  Similarity=0.085  Sum_probs=227.0

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC------HHHHHHHHHHHHcCCCHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT------SETYTALLHLYAGAKWTE  174 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~  174 (408)
                      .++.++|.++|-+|.+..  +.+..+.-+|.+.+-+.|..|.|+++.+.+..+ ||      ....-.|..-|...|-+|
T Consensus        48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            467899999999999854  455667778899999999999999999988775 43      445667788899999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 015370          175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      .|+.+|..+.+.+. --..+...|+..|-...+|++|.++-+++...+-++..    ..|.-+...+....+.+.|...+
T Consensus       125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            99999999998652 23568889999999999999999999999887665543    34555666667788999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ  330 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  330 (408)
                      ++..+.  .+-.+..--.+.+.+...|+++.|.+ .++.+.+..+.--..+...|..+|...|+.++....+.++.+...
T Consensus       204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHhh--CccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            998873  23445555577888999999999999 999999888776677888999999999999999999998887644


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 015370          331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~  401 (408)
                      .++  .-..+-+......-.+.|..++.+-...   +|+...+..|+..-..   .|...+-+..++.|+..-+
T Consensus       281 g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         281 GAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             Ccc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence            443  4444555555556677777777766653   6899999999987765   3556777778888875533

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.61  E-value=2.8e-12  Score=127.73  Aligned_cols=263  Identities=10%  Similarity=-0.054  Sum_probs=195.7

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL  166 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~  166 (408)
                      +...|..+..++.. +++.+|+..+.+....   .|+......+...+...|++++|...|+++....|+...+..+...
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a  551 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT  551 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            56677777777766 7888898888877764   4665544444555568899999999998876665666667777788


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV  246 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  246 (408)
                      +.+.|+.++|...+++..+.+ +++...+..+.......|++++|...+++..+.  .|+...+..+..++.+.|++++|
T Consensus       552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA  628 (987)
T PRK09782        552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA  628 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence            888999999999999888765 333334444444455669999999999988874  45677888888889999999999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      +..+++....  .+.+...++.+...+...|+.++|+. .+....+..+. +...+..+..++...|++++|+..+++..
T Consensus       629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~-~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE-MLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999988873  45677778888888999999999999 88877776543 66778888888999999999999998877


Q ss_pred             hccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          327 MTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       327 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +.  .|+. ...-.......+..+++.|.+-+.+...
T Consensus       705 ~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        705 DD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             hc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            65  3443 2333445555566667777776666543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=6.2e-12  Score=115.07  Aligned_cols=281  Identities=10%  Similarity=-0.012  Sum_probs=213.2

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHH--HHHHHHHhhcChHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSE-LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA--TRIDLMTKVFGIHSG  143 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a  143 (408)
                      .+.+.|.+.+..-.+..  +++.. |........+.|+++.|.+.+.++.+.   .|+...+.  .....+...|+++.|
T Consensus        98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            34445555544433322  22233 333345558899999999999999874   56654333  346788999999999


Q ss_pred             HHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 015370          144 ERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-------LMYNEMMTLYMSVGQVEKVALVV  215 (408)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~  215 (408)
                      .+.++++....| +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999888754 6888999999999999999999999999988754322       23344444444555667777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370          216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  295 (408)
                      +.+.+. .+.+......+...+...|+.++|..++++..+.   +++...  .++.+....++.+++.+ ..+...+..+
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~-~~e~~lk~~P  325 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEK-VLRQQIKQHG  325 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHH-HHHHHHhhCC
Confidence            776543 3447778888999999999999999999998873   445532  34455556699999999 8888776655


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      . |...+..+...+.+.+++++|.+.|+...+.  .|+..++..+...+.+.|+.++|.+++++-..
T Consensus       326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4 6677888999999999999999999998875  68999999999999999999999999998654

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=1.8e-11  Score=112.61  Aligned_cols=285  Identities=10%  Similarity=0.009  Sum_probs=204.0

Q ss_pred             CCCcHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChH--HHHHHHHHHHhhcChHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATV-SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDS--DYATRIDLMTKVFGIHSGE  144 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~  144 (408)
                      +...|.+.+....+.  .|+. ..+-.......+.|+++.|.+.+.+..+.   .|+..  ..-.....+...|+++.|.
T Consensus        99 ~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        99 DYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             CHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            445666666655443  3443 33445567778889999999999998764   35543  3444578888999999999


Q ss_pred             HHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHH
Q 015370          145 RYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-EMMTLY---MSVGQVEKVALVVEEIK  219 (408)
Q Consensus       145 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~  219 (408)
                      +.++.+.+..| +..++..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++   ...+..++..+.+..+.
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999988755 6788999999999999999999999999998754 333332 222222   33333333444555555


Q ss_pred             hCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH--HHHHHHHHHHcCchhhhHHHHHHHHHHhc
Q 015370          220 RKNV---VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYITASHLVNAESSTLVEAEKSI  294 (408)
Q Consensus       220 ~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~  294 (408)
                      ....   +.+...+..+...+...|+.++|.+++++..+..  +++...  ...........++.+.+.+ .++...+..
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~-~~e~~lk~~  329 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK-LIEKQAKNV  329 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH-HHHHHHHhC
Confidence            4322   1377888889999999999999999999998842  222211  1122222334567777877 666665543


Q ss_pred             ccCcc--chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          295 TQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       295 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +. |.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            32 44  566788999999999999999999655555578998899999999999999999999998643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=2.3e-11  Score=105.94  Aligned_cols=289  Identities=13%  Similarity=0.066  Sum_probs=204.1

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC----CHHHHHHHHHHHHcC
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----TSETYTALLHLYAGA  170 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~ll~~~~~~  170 (408)
                      ..++......+++++-.+...+.| ++-+...-+....+.-...+++.|+.+|+++.+..|    |..+|+.++-.-...
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            344555567777777777777776 544444444444555677889999999999888744    678888877554433


Q ss_pred             CCHHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370          171 KWTEK-AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF  249 (408)
Q Consensus       171 ~~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  249 (408)
                      ..+.- |..+++ +  ...  -+.|+.++.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-
T Consensus       313 skLs~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  313 SKLSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             HHHHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence            33221 222221 1  112  3568888888888888899999999888886543 567788888888888888899999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      ++...+  -.|.|-..|-.|..+|.-.+...=|+- .+++...-. +.|...|.+|..+|.+.++.++|+..|.+....|
T Consensus       387 YRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLy-YfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  387 YRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALY-YFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHH-HHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            988887  456788888889999988888888888 777665543 3478889999999999999999999988877766


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 015370          330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDI-SACNRLLGAFSDVGLTEKANEFHML  395 (408)
Q Consensus       330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~  395 (408)
                       ..+...+..|.+.|-+.++.++|...|.+.++    .|...|.. ...--|..-+.+.+++++|..+...
T Consensus       463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence             34667788888888888999998888887665    23233321 2222255556666777666554433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=4.6e-12  Score=115.05  Aligned_cols=281  Identities=13%  Similarity=0.038  Sum_probs=219.9

Q ss_pred             CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChH-HHHHH
Q 015370           69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIH-SGERY  146 (408)
Q Consensus        69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~-~a~~~  146 (408)
                      .+.|...|.. .-..+.-+..+...+.++|...+++++|.++|+.+.+..+... +..+|.+.+--+-+.-... -|..+
T Consensus       335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            3567777777 3333555667888899999999999999999999988653332 4678888775443322221 22333


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370          147 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD  226 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  226 (408)
                      .+..+   ....+|.++.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+.....    |
T Consensus       414 i~~~~---~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~  485 (638)
T KOG1126|consen  414 IDTDP---NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----D  485 (638)
T ss_pred             HhhCC---CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C
Confidence            33332   468999999999999999999999999999876 336789999988899999999999999988763    4


Q ss_pred             HHHHH---HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH
Q 015370          227 IFTYN---LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       227 ~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      ...|+   -+...|.+.++++.|+-.|++..+-  -+-+.+....+...+.+.|+.++|++ ++++...-.+. |..+--
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~-~~~~A~~ld~k-n~l~~~  561 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQ-LYEKAIHLDPK-NPLCKY  561 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHH-HHHHHHhcCCC-CchhHH
Confidence            44454   4566899999999999999999873  45566777888899999999999999 88888766554 555555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..+..+...+++++|++.++++++.  .|+ ...|..+...|-+.|+.+.|+.-|.-+.+..
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            6777788899999999999999886  554 4557788999999999999999998887643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=8.6e-11  Score=102.43  Aligned_cols=300  Identities=13%  Similarity=0.037  Sum_probs=195.9

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHH-HH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETY-TA  162 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~  162 (408)
                      ...|..-+......+.+.|..+.|.+.|......-     +..|.+.+....-..+.+.+..+...+...  +...- --
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~F  232 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKFF  232 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHHH
Confidence            33444444444445566677777777777665532     233333333322222333332222222210  10000 11


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 015370          163 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-------------------  223 (408)
Q Consensus       163 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------  223 (408)
                      +..++....+.+++.+-.+.....|++-+...-+-...+.....++|+|+.+|+++.+...                   
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            1233333344455555555555555443333333333333444455555555555544311                   


Q ss_pred             --------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Q 015370          224 --------------VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE  289 (408)
Q Consensus       224 --------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  289 (408)
                                    +--..|+.++.+-|+-.++.++|..+|+...+-  .+-....|+.+.+-|...++...|.+ -++.
T Consensus       313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~-sYRr  389 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE-SYRR  389 (559)
T ss_pred             HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH-HHHH
Confidence                          011234555556666777899999999999883  34566779999999999999999999 8888


Q ss_pred             HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 015370          290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF  368 (408)
Q Consensus       290 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  368 (408)
                      ..+-.+. |-..|-.|.++|.-.+.+.=|+-.|++....  +| |...|.+|.++|.+.++.++|+..|.+....+  ..
T Consensus       390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dt  464 (559)
T KOG1155|consen  390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DT  464 (559)
T ss_pred             HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--cc
Confidence            8766544 8899999999999999999999999987765  44 78899999999999999999999999999876  34


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          369 DISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +...+..|.+.|-+.++.++|...|++.++
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            667889999999999999999999988765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.52  E-value=8.4e-11  Score=110.35  Aligned_cols=305  Identities=15%  Similarity=0.127  Sum_probs=188.9

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLY  167 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~  167 (408)
                      ...-...+.+...|+.++|.+++.++.+..  +.....|-+|...|-..|+.+++...+-..... +.|...|..+....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            334444555556699999999999998874  667788999999999999999888765543333 35678899999999


Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCH
Q 015370          168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN----LWISSCAATLNI  243 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~  243 (408)
                      .+.|++++|.-+|.+.++.. +++...+--=...|-+.|+...|..-|.++.......|..-+.    ..+..+...++-
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999988886 5566666666778888999999999998888764422333233    334456666777


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc----------------------Cccch
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ----------------------RQWIT  301 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~  301 (408)
                      +.|.+.++......+-..+...++.++..|.+...++.|.. ....+......                      ++...
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~-~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s  375 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALM-KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS  375 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhH-HHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence            88888887766644555666677888888888888888877 44444331111                      11111


Q ss_pred             HH----HHHHHHHhcCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370          302 YD----FLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR  375 (408)
Q Consensus       302 ~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  375 (408)
                      |+    .++-++.+....+....+...+......|  +...|.-+.++|...|++.+|+.+|..+..... -.+...|-.
T Consensus       376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~  454 (895)
T KOG2076|consen  376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYK  454 (895)
T ss_pred             ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHH
Confidence            11    12222233333333333333333333222  222344455555555555555555555544322 123444555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHh
Q 015370          376 LLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       376 li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +..+|...|.+++|.+.|+..+.
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~  477 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLI  477 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHh
Confidence            55555555555555555555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.51  E-value=2.1e-10  Score=107.78  Aligned_cols=325  Identities=12%  Similarity=0.042  Sum_probs=246.0

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      +.+...|..++.+.++. .+.....|.+|...|-..|+.++++..+-..-..  .+-|...|..+.....+.|+++.|.-
T Consensus       152 rg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             hCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHH
Confidence            35668899999999887 4667888999999999999999998877666554  35567899999999999999999999


Q ss_pred             HHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          146 YFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYN----EMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       146 ~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .|.+..+. +++...+---...|-+.|+...|...|.++....-+.|..-+.    .++..+...++-+.|.+.++....
T Consensus       229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99998776 4566666667788999999999999999999875323333333    345556677777999999988776


Q ss_pred             CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--------------------------CCCCCCHHHHHHHHHHH
Q 015370          221 KN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD--------------------------SGGSDDWVKYVNLVNIY  273 (408)
Q Consensus       221 ~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~~~~~~~~~li~~~  273 (408)
                      .+ -..+...+++++..+.+...++.+......+...                          .+..++..+ .-+.-++
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL  387 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL  387 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence            32 2235567788888888999999998888777651                          011222222 1233334


Q ss_pred             HHcCchhhhHHHHHHHHHHhc--ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 015370          274 ITASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK  351 (408)
Q Consensus       274 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  351 (408)
                      ...+..+.... ++....+..  +.-+...|.-+..+|...|++.+|+.+|..+......-+...|--+..+|...|..+
T Consensus       388 ~~L~~~e~~e~-ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  388 VHLKERELLEA-LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hcccccchHHH-HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            44444444444 444454544  444567888899999999999999999999887755556778889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          352 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       352 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      +|.+.|+......  +-+...--+|...+.+.|++++|.+++..+.
T Consensus       467 ~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  467 EAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999865  2344555668888999999999999999876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=5e-11  Score=101.11  Aligned_cols=198  Identities=16%  Similarity=0.028  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4556666666666667777776666666543 334556666666666666666666666666654322 34455555556


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD  316 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  316 (408)
                      +...|++++|.+.+++.......+.....+..+...+...|++++|.. .+.+.....+. +...+..+...+...|+++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            666666666666666655421112223334444444555555555555 44444333221 2233334444444444444


Q ss_pred             HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      +|...+++..... ..+...+..+...+...|+.++|..+.+.
T Consensus       187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4444444443331 11222333333344444444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.49  E-value=2.9e-12  Score=119.54  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 015370          332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG  408 (408)
Q Consensus       332 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  408 (408)
                      |++.+|..++++-...|+.+.|..++.+|++.| ++.+..-|-.|+-+   .++...+..+++-|.+.|+.|++.||
T Consensus       202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~  274 (1088)
T KOG4318|consen  202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ  274 (1088)
T ss_pred             CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence            455555555555555555555555555555554 22233222233322   44444455555555555555555543

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.5e-13  Score=85.24  Aligned_cols=49  Identities=27%  Similarity=0.587  Sum_probs=30.6

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA  238 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  238 (408)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5566666666666666666666666666666666666666666666654

>PRK12370 invasion protein regulator; Provisional

Probab=99.46  E-value=1.5e-10  Score=110.62  Aligned_cols=266  Identities=9%  Similarity=-0.020  Sum_probs=164.3

Q ss_pred             ChHHHHHHHHHHHh-----hcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCC
Q 015370          123 SDSDYATRIDLMTK-----VFGIHSGERYFEGLPLSAKT-SETYTALLHLYA---------GAKWTEKAEELFERVKQSN  187 (408)
Q Consensus       123 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~A~~~~~~m~~~~  187 (408)
                      +...|...+.+...     .+++++|..+|++.....|+ ...|..+..++.         ..+++++|...+++..+.+
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld  334 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD  334 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence            34445555544322     23456777888877666443 555655555443         2244778888888888775


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 015370          188 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV  267 (408)
Q Consensus       188 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  267 (408)
                       +-+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+..  +.+...+.
T Consensus       335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~  410 (553)
T PRK12370        335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGI  410 (553)
T ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHH
Confidence             446777777777888888888888888888775432 45566777777888888888888888887742  22222333


Q ss_pred             HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh-HHHHHHHHHh
Q 015370          268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLM  346 (408)
Q Consensus       268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~  346 (408)
                      .++..+...|++++|.. .+.+.....++.+...+..+...+...|+.++|.+.+.++...  .|+... .+.+...|..
T Consensus       411 ~~~~~~~~~g~~eeA~~-~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        411 TKLWITYYHTGIDDAIR-LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHhccCHHHHHH-HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence            34445666778888888 7776655543334445666777777888888888888776544  333322 3344455566


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                      .|  ++|...++.+.+.....+....+.  -..+.-.|+.+.+..+ +++.+.|
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGLL--PLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchHH--HHHHHHHhhhHHHHHH-HHhhccc
Confidence            66  477777777665432333333333  3334445555555544 6666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=2.7e-10  Score=95.03  Aligned_cols=253  Identities=13%  Similarity=0.062  Sum_probs=195.7

Q ss_pred             hcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHH
Q 015370          137 VFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA------LMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~  209 (408)
                      ..+.++|..+|-+|.+.. .+..+.-+|.+.|-+.|++|.|+++.+.+.++   ||.      .+...|..-|...|-+|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            468899999999988763 45677788999999999999999999998875   332      23456677788999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCchhhhHHHH
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESST  286 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~  286 (408)
                      .|+.+|..+.+.|.- -.....-|+..|-...++++|+++-+++.+..+-+.+.   ..|.-|...+....+.+.|.. +
T Consensus       125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~-~  202 (389)
T COG2956         125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE-L  202 (389)
T ss_pred             HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH-H
Confidence            999999999986532 45677888999999999999999999888743332222   236778888888899999999 8


Q ss_pred             HHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 015370          287 LVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS  366 (408)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  366 (408)
                      +.+..+..++ ++..--.+.+.....|+++.|.+.|+...+.+..--......|..+|.+.|+.++....+.++.+..  
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--  279 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--  279 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence            8888777655 5555556778889999999999999999988665556677889999999999999999999998754  


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          367 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       367 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                       ++...-..|...-....-.+.|..++.+-+.
T Consensus       280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         280 -TGADAELMLADLIELQEGIDAAQAYLTRQLR  310 (389)
T ss_pred             -CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence             3444444455544444455666665555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=1.8e-10  Score=110.04  Aligned_cols=267  Identities=10%  Similarity=-0.009  Sum_probs=189.6

Q ss_pred             CChhhHHHHHHHHHh-----cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh---------hcChHHHHHHHhcCC
Q 015370           86 ATVSELRHILKELRK-----SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTK---------VFGIHSGERYFEGLP  151 (408)
Q Consensus        86 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~  151 (408)
                      .+...|...+++...     .+.+++|+++|++..+..  +-+...|..+..++..         .+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            345556666665422     245779999999999853  3334566655554442         234789999999887


Q ss_pred             CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370          152 LSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY  230 (408)
Q Consensus       152 ~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  230 (408)
                      ...| +...+..+...+...|++++|...|++..+.+ |.+...|..+...+...|++++|...+++..+.... +...+
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            7644 68889999999999999999999999999886 556778999999999999999999999999986543 22233


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      ..++..+...|++++|...++++... ..+.+...+..+..++...|+.++|.. .+.++.... +.+....+.+...|.
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~-~~~~~~~~~-~~~~~~~~~l~~~~~  486 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARK-LTKEISTQE-ITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHH-HHHHhhhcc-chhHHHHHHHHHHHh
Confidence            34455567789999999999998763 223355567888899999999999999 777764442 224455566666777


Q ss_pred             hcCCHHHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          311 GLGNKDKIDQIWKSLRMTK-QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..|  ++|...++.+.+.. ..+....+  +-..+.-.|+-+.+..+ +++.+.+
T Consensus       487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            777  47777777665432 22322223  33444556777777766 7776644

>PF13041 PPR_2: PPR repeat family

Probab=99.45  E-value=2.3e-13  Score=84.37  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS  204 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  204 (408)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999975

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.2e-10  Score=98.87  Aligned_cols=196  Identities=15%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS  204 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  204 (408)
                      .+..+...+...|++++|.+.+++..... .+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...+..
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            33334444444444444444444433221 223444444455555555555555555544432 2233444445555555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370          205 VGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       205 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  283 (408)
                      .|++++|.+.+++.......| ....+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHH
Confidence            555555555555554422111 2233444444555555555555555555442  2223444555555555555555555


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      . .+++.... .+.+...+..+...+...|+.++|..+++.+.
T Consensus       190 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       190 A-YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             H-HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5 55544443 22233444444555555555565555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.4e-09  Score=103.17  Aligned_cols=324  Identities=13%  Similarity=0.104  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHH----hccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370           72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMV----THKEFVLSDSDYATRIDLMTKVFGIHSGERYF  147 (408)
Q Consensus        72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  147 (408)
                      |..++.+..+. .+.|...|-.+...+-.. +...++.+|....    ..+ -.+.+...|.+.......|+++.|...|
T Consensus       399 a~~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf~~g~~~~A~~~f  475 (1018)
T KOG2002|consen  399 ASNVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHFRLGNIEKALEHF  475 (1018)
T ss_pred             HHHHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence            34444443333 355677777666666544 4444466666543    344 3477888899999999999999999988


Q ss_pred             hcCCCC-----CCC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          148 EGLPLS-----AKT------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE  216 (408)
Q Consensus       148 ~~~~~~-----~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  216 (408)
                      ......     .+|      +.+--.+...+-..++.+.|.+.|..+.... |-=+..|--++......+...+|...+.
T Consensus       476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk  554 (1018)
T KOG2002|consen  476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLK  554 (1018)
T ss_pred             HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence            875543     122      2234445666677788999999999988764 2234455555544445677888888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH------------cCchhhhHH
Q 015370          217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT------------ASHLVNAES  284 (408)
Q Consensus       217 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~~~~~~a~~  284 (408)
                      ...... ..+...++.+...+.+..++..|.+-|....+.....+|..+..+|.+.|.+            .+..++|++
T Consensus       555 ~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq  633 (1018)
T KOG2002|consen  555 DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ  633 (1018)
T ss_pred             HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence            877643 2355666667778888888888888666665544444677776677775543            334667777


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          285 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                       ++..+.+..+. |...-|.+...++..|++.+|..+|...++... -+..+|..+.++|..+|++..|++.|+...++.
T Consensus       634 -~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  634 -LYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             -HHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             77777666544 777778888889999999999999999988764 255678889999999999999999999988766


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          365 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       365 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      ....+....+.|.+++.+.|.+.+|.+.+.....  ..|..
T Consensus       711 ~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~  749 (1018)
T KOG2002|consen  711 YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN  749 (1018)
T ss_pred             cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence            5566778888899999999999999998887766  45544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=7.1e-10  Score=96.60  Aligned_cols=278  Identities=11%  Similarity=0.062  Sum_probs=201.4

Q ss_pred             HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH--HHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCH
Q 015370           97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR--IDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWT  173 (408)
Q Consensus        97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~  173 (408)
                      .+.+.|+++.|++++.-..+.. -+.-...-+.|  +..+.--.++..|.++-+..... .-|....+.-.+.....|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence            4678899999999998887665 22222222222  22222234577777766554432 12333333333445567999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                      ++|.+.|.+.+..+-.- ....-.+.-.+-..|++++|+..|-.+-.- +.-+.....-+.+.|-...++.+|++++-+.
T Consensus       507 dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            99999999999875221 223333444567889999999999776542 2235666777888899999999999999888


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 015370          254 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT  333 (408)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  333 (408)
                      ..  -++.|+.+.+.|...|-+.|+-..|.+ ...+-..- .+-+..+..-|..-|....-+++++.+|++..-  +.|+
T Consensus       585 ~s--lip~dp~ilskl~dlydqegdksqafq-~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~  658 (840)
T KOG2003|consen  585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN  658 (840)
T ss_pred             cc--cCCCCHHHHHHHHHHhhcccchhhhhh-hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence            76  578899999999999999999999998 54443333 344777777788889999999999999996543  5899


Q ss_pred             hhhHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          334 SRNYICILSSY-LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       334 ~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      ..-|..+|..| .+.|++.+|.+++++..++  ++.|..+..-|++.+...|.
T Consensus       659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence            99999877655 5789999999999998876  46788888889998888774

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.38  E-value=1.1e-09  Score=103.81  Aligned_cols=322  Identities=12%  Similarity=0.055  Sum_probs=242.6

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhcc--CCCCChH------HHHHHHHHHHhhcChHHHHHH
Q 015370           75 VIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHK--EFVLSDS------DYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        75 ~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~------~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .++.|...+..+.++..|.+...+...|++..|...|......-  ...++..      +--.+...+-..++++.|.+.
T Consensus       439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~  518 (1018)
T KOG2002|consen  439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM  518 (1018)
T ss_pred             HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence            34456678888999999999999999999999999999987651  0123331      111234555677899999999


Q ss_pred             HhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 015370          147 FEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VV  224 (408)
Q Consensus       147 ~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~  224 (408)
                      |..+....|+ +..|--++......++..+|...+....+.+ ..++..++.+...+.+...+..|.+-|....+.- ..
T Consensus       519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK  597 (1018)
T ss_pred             HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence            9999887665 5556666545555678899999999988765 5577888888989999999999999777766542 23


Q ss_pred             CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          225 PDIFTYNLWISSCAA------------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       225 p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      +|.++.-.|.+.|..            .+..++|+++|.++.+.  .+-+...-|-+.-.++..|++.+|.. +|..+.+
T Consensus       598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~d-IFsqVrE  674 (1018)
T KOG2002|consen  598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARD-IFSQVRE  674 (1018)
T ss_pred             CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHH-HHHHHHH
Confidence            577777777775543            23578899999998883  45677777888889999999999999 9998887


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370          293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS  371 (408)
Q Consensus       293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  371 (408)
                      .... +..+|-.+.++|...|++..|+++|+...+. ...-+......|.+++.+.|.+.+|.+.+.......... ...
T Consensus       675 a~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~-~~v  752 (1018)
T KOG2002|consen  675 ATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN-TSV  752 (1018)
T ss_pred             HHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc-chH
Confidence            7653 5668889999999999999999999975544 434466778889999999999999999999888765332 234


Q ss_pred             HHHHHHHHH------------------HhcCChHHHHHHHHHHHhcCCC
Q 015370          372 ACNRLLGAF------------------SDVGLTEKANEFHMLLLQKNCA  402 (408)
Q Consensus       372 ~~~~li~~~------------------~~~g~~~~a~~~~~~m~~~g~~  402 (408)
                      .||..+...                  ...+..+.|.++|.+|...+-.
T Consensus       753 ~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  753 KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            455443222                  1234567788888888776543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.36  E-value=6.4e-11  Score=98.79  Aligned_cols=231  Identities=9%  Similarity=0.019  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG  206 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  206 (408)
                      -+.+..+|.+.|.+.+|.+.|+.-....|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-|+.-..-+.+.+-..+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence            345566777777777777777766655566677777777777777777777777776665 3444444455666666677


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHH
Q 015370          207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESST  286 (408)
Q Consensus       207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  286 (408)
                      +.++|.++|+...+... .++....++...|.-.++++-|..+++++.+ .|+ -++..|+.+..+|.-.++++-++. -
T Consensus       305 ~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~-s  380 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLP-S  380 (478)
T ss_pred             hHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHH-H
Confidence            77777777777665432 2555555666666667777777777777776 354 356667777777777777777776 6


Q ss_pred             HHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          287 LVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       287 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +.+.......|+  ...|-.|.......|++..|.+.|+-....+.. ....++.|.-.-.+.|++++|..++......
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            666665554443  245666666666777777777777765554322 4456666666667777777777777776553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.6e-09  Score=94.74  Aligned_cols=284  Identities=14%  Similarity=0.054  Sum_probs=220.0

Q ss_pred             CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHH
Q 015370           85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTAL  163 (408)
Q Consensus        85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l  163 (408)
                      .-+......-.+-+...+++.+..++++...+..  ++....+..-|..+...|+..+-..+=.++...- ....+|-++
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV  318 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV  318 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence            3445555566677778899999999999999875  6677777777778888888766655555555553 468899999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhc
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--N-VVPDIFTYNLWISSCAAT  240 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g-~~p~~~~~~~ll~~~~~~  240 (408)
                      .-.|...|..++|.+.|.+....+ +.=...|-.....|+-.|..|+|...|...-+.  | ..|..  |  +.--|.+.
T Consensus       319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t  393 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRT  393 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHh
Confidence            988988999999999999877654 112468999999999999999999988766542  2 22322  2  34457788


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC------ccchHHHHHHHHHhcCC
Q 015370          241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR------QWITYDFLIILYAGLGN  314 (408)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~  314 (408)
                      ++++.|.++|.+...  ..|.|+.+.+-+.-.....+.+.+|.. .|..........      -..+++.|..+|.+.+.
T Consensus       394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALK-YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHH-HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            999999999999987  467788888888888888999999999 777766322211      23468899999999999


Q ss_pred             HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370          315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD  382 (408)
Q Consensus       315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  382 (408)
                      +++|+..+++...... -+..++.++.-.|...|+++.|.+.|++..-   +.|+-.+-..++..+..
T Consensus       471 ~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHHHHH
Confidence            9999999998777643 3788899999999999999999999999774   46776666666665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.33  E-value=2.8e-08  Score=90.64  Aligned_cols=299  Identities=12%  Similarity=0.034  Sum_probs=155.0

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL  166 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~  166 (408)
                      ...|......=-..|..++...+|++....  ++-....|-....-+-..|++..|..++.+..... .+...|-+-+..
T Consensus       550 ~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl  627 (913)
T KOG0495|consen  550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL  627 (913)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            334444444444444455555555555443  22223333333344444455555555544443332 234445555555


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~  245 (408)
                      -..+.+++.|..+|.+....  .|+...|.--+..---.+..++|.+++++..+.  -|+- -.|-.+...+-+.++++.
T Consensus       628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~  703 (913)
T KOG0495|consen  628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM  703 (913)
T ss_pred             hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence            55555555555555544443  234444444444444444555555555444442  2232 233333444444455555


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      |.+.|..=.+  .++..+-.|..|...--+.|.+-.|.. ++++....++. +...|-..|.+-.+.|+.+.|..+..+.
T Consensus       704 aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~-ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  704 AREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARS-ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKA  779 (913)
T ss_pred             HHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHH-HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5544444333  233334444444444444445555554 44444333322 4444444455545555555444444332


Q ss_pred             Hhc-----------------------------cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370          326 RMT-----------------------------KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL  376 (408)
Q Consensus       326 ~~~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  376 (408)
                      .+.                             .+.-|+.....+...+-...++++|.+.|.+.++.+  +.+-.+|.-+
T Consensus       780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~f  857 (913)
T KOG0495|consen  780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWF  857 (913)
T ss_pred             HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHH
Confidence            211                             123355556667777888889999999999999865  3355678878


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 015370          377 LGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       377 i~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ...+.+.|.-++-.++++....
T Consensus       858 ykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  858 YKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHhCCHHHHHHHHHHHhc
Confidence            9999999998888999988876

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=4.8e-09  Score=92.40  Aligned_cols=154  Identities=10%  Similarity=0.053  Sum_probs=102.9

Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD  316 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  316 (408)
                      +.-.+++++|..=|++.+.  --+.+...|..+.-+..+.++++++.. .|++..++.+. ....|+.....+...++++
T Consensus       404 ~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPN-CPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHhhHHhHH
Confidence            3333445555555555544  123344555566666677778888888 88887777654 6778888888888899999


Q ss_pred             HHHHHHHHHHhccCC-----CChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015370          317 KIDQIWKSLRMTKQK-----MTSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA  389 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~-----p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  389 (408)
                      .|.+.|+...+....     .+..++.  .++- +--.+++..|..++++.++..  +.....|.+|...-.+.|+.++|
T Consensus       480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             HHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHH
Confidence            999988876554221     1122211  1111 123488889999999888743  33556788899999999999999


Q ss_pred             HHHHHHHH
Q 015370          390 NEFHMLLL  397 (408)
Q Consensus       390 ~~~~~~m~  397 (408)
                      +++|++..
T Consensus       557 ielFEksa  564 (606)
T KOG0547|consen  557 IELFEKSA  564 (606)
T ss_pred             HHHHHHHH
Confidence            99998754

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.32  E-value=6.2e-09  Score=96.62  Aligned_cols=295  Identities=13%  Similarity=0.035  Sum_probs=199.9

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH-c--
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA-G--  169 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~-~--  169 (408)
                      -....+...|++++|++.++.-...  +......+......+.+.|+.++|..+|..+...+|+-..|-..+..+. -  
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence            3445667889999999999886654  3334555667778899999999999999999888776655554444433 2  


Q ss_pred             ---CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370          170 ---AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       170 ---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  245 (408)
                         ..+.+...++|+++...-  |...+...+.-.+..-..+ ..+..++..+..+|++   .+|+.+-..|....+.+-
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence               235777888888887653  4444443333333322233 3455566777788875   356666666665555555


Q ss_pred             HHHHHHHHhcCC-------------CCCCCHH--HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370          246 VKKFLDEMSCDS-------------GGSDDWV--KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       246 a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      ..+++.......             .-+|+..  ++.-+...|-..|++++|++ .++...+..+. .+..|..-...+-
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt-~~ely~~KarilK  239 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPT-LVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCC-cHHHHHHHHHHHH
Confidence            555555543210             1234443  34566778889999999999 88877776533 4667777888889


Q ss_pred             hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CHH----HH--HHHHHHHHh
Q 015370          311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS----AC--NRLLGAFSD  382 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~----~~--~~li~~~~~  382 (408)
                      +.|++++|.+.++..+..... |...-+-.+..+.+.|++++|.+++....+.+. .|  |..    .|  .....+|.+
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r  317 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLR  317 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988776532 555555678888899999999999998876652 23  222    22  445678889


Q ss_pred             cCChHHHHHHHHHHHh
Q 015370          383 VGLTEKANEFHMLLLQ  398 (408)
Q Consensus       383 ~g~~~~a~~~~~~m~~  398 (408)
                      .|++..|+.-|..+.+
T Consensus       318 ~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  318 QGDYGLALKRFHAVLK  333 (517)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            9999999877665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.31  E-value=6.5e-10  Score=104.21  Aligned_cols=253  Identities=11%  Similarity=0.085  Sum_probs=183.0

Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC
Q 015370           74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS  153 (408)
Q Consensus        74 ~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  153 (408)
                      .++-.+...|+.|+..||.++|.-|+..|+.+.|- +|.-|.-.. .+.+...++.++......++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence            45666888999999999999999999999999998 999998775 6778889999999888888887665         


Q ss_pred             CCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHH----hCCCCCChhhH---------------HHHHHHHHhcCCHHHH
Q 015370          154 AKTSETYTALLHLYAGAKWTEK---AEELFERVK----QSNLSFNALMY---------------NEMMTLYMSVGQVEKV  211 (408)
Q Consensus       154 ~~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~----~~~~~p~~~~~---------------~~li~~~~~~g~~~~a  211 (408)
                      .|...+|+.|+.+|...|++..   ..+.+..+.    ..|+- ....|               ...+.-..-.|-++.+
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql  158 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL  158 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999765   222122111    12211 11111               1233334455666666


Q ss_pred             HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 015370          212 ALVVEEIKRKNV-VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA  290 (408)
Q Consensus       212 ~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  290 (408)
                      ++++..+..... .|-.+    +++-+...  .....++....+.-.+ .|+..+|.+++..-...|+++.|.. ++.+|
T Consensus       159 lkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~-ll~em  230 (1088)
T KOG4318|consen  159 LKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKN-LLYEM  230 (1088)
T ss_pred             HHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHH-HHHHH
Confidence            666655543211 11111    24433322  2334444444444212 5899999999999999999999999 99999


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370          291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH  349 (408)
Q Consensus       291 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  349 (408)
                      .+.+.+.+...|-.|+.+   .++...+..+++-|++.|+.|+..|+...+..+...|.
T Consensus       231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999988887766677744   88889999999999999999999999988877777555

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.28  E-value=3.1e-08  Score=85.38  Aligned_cols=284  Identities=10%  Similarity=-0.024  Sum_probs=217.4

Q ss_pred             CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYF  147 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  147 (408)
                      +...|+..+.+..+.+-.| ...|..-..+.-+.|+.+.+-..+.+..+.. -.++...+-+........|+++.|..-.
T Consensus        99 ~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          99 DFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            4456666676666665443 3446666778888899999999999998752 2555667777788889999999999888


Q ss_pred             hcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          148 EGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-------LMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       148 ~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      +++... +.+..+......+|.+.|++.+...++..|.+.|+--|.       .+|+.+++=....+..+.-...++...
T Consensus       177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p  256 (400)
T COG3071         177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP  256 (400)
T ss_pred             HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence            887766 457899999999999999999999999999999865443       467777777777777777666776665


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc
Q 015370          220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW  299 (408)
Q Consensus       220 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  299 (408)
                      .+ .+-+...-.+++.-+.+.|+.++|.++.++..++ +..|+.    ...-...+-++.+.-.+ ..+.-.+..+. +.
T Consensus       257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k-~~e~~l~~h~~-~p  328 (400)
T COG3071         257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIK-AAEKWLKQHPE-DP  328 (400)
T ss_pred             HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHH-HHHHHHHhCCC-Ch
Confidence            43 3445666777788889999999999999998885 554441    22233455666666666 44444444322 44


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ..+.+|...|.+.+.+.+|...|+...+  ..|+..+|+.+.+++.+.|+.++|.+..++....
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7788999999999999999999996555  4789999999999999999999999999987643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.27  E-value=1e-08  Score=94.18  Aligned_cols=235  Identities=13%  Similarity=0.137  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCC--------CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CC
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLS--------AKTSE-TYTALLHLYAGAKWTEKAEELFERVKQS-----N--LS  189 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~  189 (408)
                      +...+...|...|+++.|+.+++.....        .|.+. ..+.+...|...+++++|..+|+++...     |  .+
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444555666666666666555543221        12222 2334667788888888888888877642     2  11


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CC
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVV-PDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSG--GS  260 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~  260 (408)
                      --..+++.|..+|.+.|++++|...++...+     .|.. |.. .-++.+...++..+++++|..+++...+...  ..
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            2234677777788888888888777766542     1211 222 2345555666777777777777765443210  11


Q ss_pred             ----CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc-------CccchHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 015370          261 ----DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-------RQWITYDFLIILYAGLGNKDKIDQIWKSLR---  326 (408)
Q Consensus       261 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---  326 (408)
                          .-..+++.|...|.+.|++++|.+ +++.+......       -....++.|...|.+.+.+.+|.++|.+-.   
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence                112346666666666666666666 55555443211       012344455555555666666666555422   


Q ss_pred             -hccC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          327 -MTKQ-KMT-SRNYICILSSYLMLGHLKEVGEIIDQWK  361 (408)
Q Consensus       327 -~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  361 (408)
                       ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             1121 111 1234445555555555555555555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=9e-10  Score=92.07  Aligned_cols=233  Identities=11%  Similarity=-0.050  Sum_probs=194.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-NLWISSCA  238 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~  238 (408)
                      -+-+.++|.+.|...+|.+.|+.-+..  .|-+.||-.|-.+|.+..+++.|+.++.+-.+.  .|-.+|| .-+.+.+-
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            367889999999999999999998876  467889999999999999999999999998875  4555555 45667888


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370          239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                      ..++.++|.++++...+.  .+.++.....+...|.-.+++|.|++ .+.++.+-|.. +...|+.+.-+|.-.+++|-+
T Consensus       302 am~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence            899999999999999884  45566777778888999999999999 99999988877 778899999999999999999


Q ss_pred             HHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          319 DQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       319 ~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      +--|.+....--.|+.  ..|-.+.......||+..|.+.|+-...++  ..+...+|.|.-.-.+.|++++|..+++..
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            9999887766545544  346667777778899999999999887654  446788999998889999999999999987


Q ss_pred             HhcCCCCC
Q 015370          397 LQKNCAPT  404 (408)
Q Consensus       397 ~~~g~~p~  404 (408)
                      ..  +.|+
T Consensus       456 ~s--~~P~  461 (478)
T KOG1129|consen  456 KS--VMPD  461 (478)
T ss_pred             hh--hCcc
Confidence            76  4444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.25  E-value=6.6e-08  Score=88.34  Aligned_cols=263  Identities=11%  Similarity=0.014  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~  168 (408)
                      ||..-.+.|.+.+.++-|..+|....+.  ++-+...|......=-..|..+....+|++....- .....|-....-+-
T Consensus       518 tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  518 TWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW  595 (913)
T ss_pred             HHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence            3444444444455555555555555443  23334445444444444555555555555555442 23445555556666


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                      ..|++..|..++....+.. +-+...|-.-+..-..+.+++.|..+|.+....  .|+...|.--+..---.++.++|.+
T Consensus       596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r  672 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR  672 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence            6677777777777766654 335556777777777777777777777766653  4455555554554455577777777


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ++++..+.  ++.-.-.|..+...+-+.++++.|.. .+..-.+ ..+.....|-.|...--+.|.+-+|..++++-+..
T Consensus       673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~-aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMARE-AYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHH-HHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            77777763  34444556667777777777777776 4432211 22334556666666666777777888888776666


Q ss_pred             cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +++ +...|...|+.=.+.|+.+.|..++.+...
T Consensus       749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            543 666777777777788887777777766544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.9e-08  Score=85.00  Aligned_cols=299  Identities=11%  Similarity=-0.000  Sum_probs=215.5

Q ss_pred             hhHHHHHHHHHh--cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHH
Q 015370           89 SELRHILKELRK--SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLH  165 (408)
Q Consensus        89 ~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~  165 (408)
                      .+....+.+++.  .++...+..++-.......++-+......+...+...|+.++|+..|++.....|+ +.......-
T Consensus       195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~  274 (564)
T KOG1174|consen  195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV  274 (564)
T ss_pred             cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence            333444554443  34445555555444443335667788889999999999999999999988776553 333444445


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  245 (408)
                      .+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++.++.... +...|-.-.+.+...|++++
T Consensus       275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~  352 (564)
T KOG1174|consen  275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQ  352 (564)
T ss_pred             HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHH
Confidence            5667888888888888877653 234556666666777889999999999988875432 44455555567788999999


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHH-HHHH-hcCCHHHHHHHHH
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYA-GLGNKDKIDQIWK  323 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~  323 (408)
                      |.-.|+....  --|-+...|.-|+++|...|++.+|.- .-....+..+. +..+...+. ..+. ....-++|..+++
T Consensus       353 A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~-~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~e  428 (564)
T KOG1174|consen  353 AVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA-LANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAE  428 (564)
T ss_pred             HHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHH
Confidence            9999999886  345678899999999999999999998 55555554433 555554442 2222 2334578888888


Q ss_pred             HHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          324 SLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       324 ~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .-...  .|+. ...+.+...+...|..+++..++++...   ..||....+.|.+.+...+.+.+|++.|...+.
T Consensus       429 k~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  429 KSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             hhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            65443  4543 2455677788899999999999999886   358999999999999999999999999988776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=2.1e-07  Score=82.04  Aligned_cols=314  Identities=11%  Similarity=0.097  Sum_probs=153.7

Q ss_pred             CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHh
Q 015370           69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFE  148 (408)
Q Consensus        69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  148 (408)
                      ..-|.++|+.|..  ..|+...|.+.|+-=.+.+.++.|..++++..-   +.|+..+|......=-++|++..|.++|+
T Consensus       157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3445667777765  467777777777777777777777777777765   45777777777776677777777777776


Q ss_pred             cCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--------
Q 015370          149 GLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALV--------  214 (408)
Q Consensus       149 ~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~--------  214 (408)
                      .....-    .+...+.+....=.++..++.|.-+|.-.++. +|.+  ...|......=-+.|+.......        
T Consensus       232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            554431    12334444444444455566666666555543 1211  22233222222223332222222        


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH--HHHHHH--------HHHHHcCchhhhHH
Q 015370          215 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV--KYVNLV--------NIYITASHLVNAES  284 (408)
Q Consensus       215 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li--------~~~~~~~~~~~a~~  284 (408)
                      |+.++..+. -|-.+|-..++.-...|+.+...++|+....  +++|-..  .|.-.|        ..-....+.+.+.+
T Consensus       311 YE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  311 YEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             HHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            222333221 2344444455555555666666666666655  3444221  011111        11123445555555


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHH----HhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          285 STLVEAEKSITQRQWITYDFLIILY----AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  360 (408)
                       ++....+ .++....||.-+=-.|    .+..++..|.+++..  ..|..|-..+|...|..=.+.+.++....++++.
T Consensus       388 -vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~--AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf  463 (677)
T KOG1915|consen  388 -VYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN--AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF  463 (677)
T ss_pred             -HHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH--HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             5554444 2222333333322222    234445555555542  2333444445544444444445555555555554


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          361 KQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      ++-+  +-|..+|......-...|+.+.|..+|.-.+
T Consensus       464 le~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi  498 (677)
T KOG1915|consen  464 LEFS--PENCYAWSKYAELETSLGDTDRARAIFELAI  498 (677)
T ss_pred             HhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            4432  2234444444444444444444444444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.22  E-value=1.4e-07  Score=85.61  Aligned_cols=92  Identities=12%  Similarity=0.013  Sum_probs=41.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDI--FTYNLWISSCA  238 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~  238 (408)
                      .+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++...... .|+.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            34444455555555555555555443 22334444444555555555555555554443211 1111  12233444444


Q ss_pred             hcCCHHHHHHHHHHHh
Q 015370          239 ATLNIDQVKKFLDEMS  254 (408)
Q Consensus       239 ~~g~~~~a~~~~~~~~  254 (408)
                      ..|++++|..++++..
T Consensus       198 ~~G~~~~A~~~~~~~~  213 (355)
T cd05804         198 ERGDYEAALAIYDTHI  213 (355)
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            5555555555555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.3e-08  Score=89.02  Aligned_cols=272  Identities=9%  Similarity=0.034  Sum_probs=200.4

Q ss_pred             CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATVSELRHILKELRK--SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      +-..|.++++-+.+...+.....-+.|-..+.-  ..++..|.+.-+......  .-++.....-.+.....|++++|.+
T Consensus       434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~  511 (840)
T KOG2003|consen  434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAE  511 (840)
T ss_pred             CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHH
Confidence            445667777766655544433333333333222  346788877777766543  3344444444455567899999999


Q ss_pred             HHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370          146 YFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV  224 (408)
Q Consensus       146 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  224 (408)
                      .|.+..... ..+...-.+.-.+-+.|++++|++.|-++... +.-++.+...+.+.|-...+..+|.+++.+.... ++
T Consensus       512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip  589 (840)
T KOG2003|consen  512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP  589 (840)
T ss_pred             HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence            999877532 22333333444567789999999999886543 2236788888999999999999999999777654 45


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370          225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF  304 (408)
Q Consensus       225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      .|....+-|...|-+.|+-.+|.+++-+--+  -++.+..+...|...|....-++++.. .|++.  ...+|+..-|..
T Consensus       590 ~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~-y~eka--aliqp~~~kwql  664 (840)
T KOG2003|consen  590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAIN-YFEKA--ALIQPNQSKWQL  664 (840)
T ss_pred             CCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHH-HHHHH--HhcCccHHHHHH
Confidence            5788899999999999999999998876555  467788888899999999999999999 77764  567899999999


Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370          305 LIILYA-GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH  349 (408)
Q Consensus       305 li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  349 (408)
                      ++..|. +.|++.+|.++|+...+. +.-|......|++.+...|.
T Consensus       665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            988776 589999999999988765 34477788888888887774

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=3.6e-08  Score=78.83  Aligned_cols=201  Identities=12%  Similarity=-0.039  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC  237 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  237 (408)
                      .+..-|.-.|...|+...|..-+++.++.+ |-+..+|..+...|.+.|+.+.|.+.|+........ +....|....-+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence            445667778888888888888888888876 446678888888888888888888888888875433 456677777777


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 015370          238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK  317 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  317 (408)
                      |..|++++|...|++.........-..+|..+.-+..+.|+.+.|.. .+.+..+..+. ...+.-.+.....+.|++-.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            88888888888888888765454555677888888888888888888 78777766554 44555677777788889999


Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          318 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      |..+++.....+. ++..+.-..|+.--..|+.+.|.++=..+.+.
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9888888877765 78888888888888888888888887777764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.20  E-value=1.6e-08  Score=88.76  Aligned_cols=150  Identities=14%  Similarity=0.043  Sum_probs=84.2

Q ss_pred             ccHHHHHHHHHHHHhccCCCCC--hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 015370          102 QRYKHALEISEWMVTHKEFVLS--DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEE  178 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~  178 (408)
                      +..+.++.-+.++.......|+  ...|..+...+...|+.++|...|++.....| +...|+.+...+...|++++|..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455566666666654322222  23455555666666666666666666555433 45666666666677777777777


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          179 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       179 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      .|++..+.. +-+..+|..+..++...|++++|.+.|+...+..  |+..........+...+++++|.+.|++..
T Consensus       120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            766666543 2244566666666666667777776666666542  322211222222334556666666665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.5e-08  Score=89.51  Aligned_cols=273  Identities=12%  Similarity=-0.036  Sum_probs=212.7

Q ss_pred             ChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370          123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL  201 (408)
Q Consensus       123 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  201 (408)
                      ++.......+-+-..+++.+..++++.+... ++....+..=|.++...|+..+-..+=.+|.+.- |-.+.+|-++.-.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY  321 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence            4455555566677788999999999987765 5677788888889999999888888888888774 6678899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      |...|+.++|.+.|.+....... =...|-....+++-.|.-|+|...+...-+-  ++-...-+--+..-|.+.+..+.
T Consensus       322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence            99999999999999887654322 2357788889999999999999988876652  11122223345566888999999


Q ss_pred             hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCC----ChhhHHHHHHHHHhcCCHHHHHH
Q 015370          282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT--KQKM----TSRNYICILSSYLMLGHLKEVGE  355 (408)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~  355 (408)
                      |.+ ++.....-.+ .|....+-+.......+.+.+|..+|+.....  ...+    -..+++.|..+|.+.+.+++|+.
T Consensus       399 Ae~-Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEK-FFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHH-HHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            999 7777655443 37777777777777889999999999876521  1111    23357789999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      .+++.....  +.+..++.++.-.|...|+++.|.+.|.+.+.  +.||.
T Consensus       477 ~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n  522 (611)
T KOG1173|consen  477 YYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN  522 (611)
T ss_pred             HHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence            999998854  56899999999999999999999999998876  77775

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.17  E-value=7.5e-08  Score=89.51  Aligned_cols=291  Identities=12%  Similarity=0.061  Sum_probs=200.3

Q ss_pred             HHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHH-HHHHHHHhh--
Q 015370           61 RIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYA-TRIDLMTKV--  137 (408)
Q Consensus        61 ~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~--  137 (408)
                      .++......+.|++.|+.-. .-+......+......+.+.|+.++|..+|..+.+.+   |+...|- .+..+..-.  
T Consensus        12 ~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcc
Confidence            44444456667777776532 2244445667788889999999999999999999975   5555554 444554222  


Q ss_pred             ---cChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015370          138 ---FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL  213 (408)
Q Consensus       138 ---g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  213 (408)
                         .+.+...++|+++...-|.......+.-.+..-..+. .+...+..+...|+|   .+|+.|-..|......+-..+
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence               2467778888888766554443333332222222343 355566778888964   577777777776666666666


Q ss_pred             HHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370          214 VVEEIKRK----N----------VVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS  277 (408)
Q Consensus       214 ~~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  277 (408)
                      ++......    +          -.|+.  .++..+...|...|++++|.+++++..+.  -|..+..|..-...|-+.|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence            66665432    1          12343  34455677788999999999999999884  3444777899999999999


Q ss_pred             chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH--------HHHHHHHHhcCC
Q 015370          278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY--------ICILSSYLMLGH  349 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~  349 (408)
                      ++.+|.+ .++....-.. -|-..=+-.+..+.+.|++++|.+++....+.+..|....+        .....+|.+.|+
T Consensus       243 ~~~~Aa~-~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  243 DLKEAAE-AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CHHHHHH-HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999 7776654433 35556566777888999999999999988777654433221        335678999999


Q ss_pred             HHHHHHHHHHHHh
Q 015370          350 LKEVGEIIDQWKQ  362 (408)
Q Consensus       350 ~~~A~~~~~~~~~  362 (408)
                      +..|++-|..+.+
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.11  E-value=1.9e-07  Score=81.99  Aligned_cols=224  Identities=11%  Similarity=0.031  Sum_probs=154.5

Q ss_pred             ChHHHHHHHhcCCCC---CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015370          139 GIHSGERYFEGLPLS---AK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL  213 (408)
Q Consensus       139 ~~~~a~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  213 (408)
                      ..+.++.-+.++...   .|  ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            445555555554432   12  25678888899999999999999999999875 4578899999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       214 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      .|+...+.... +..++..+..++...|++++|.+.|+...+.   .|+..........+...++.++|.. .+......
T Consensus       120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~-~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKE-NLKQRYEK  194 (296)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHH-HHHHHHhh
Confidence            99999985432 4677888888899999999999999998874   2332212222223445678999999 77655433


Q ss_pred             cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc---C--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 015370          294 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK---Q--KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD  367 (408)
Q Consensus       294 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  367 (408)
                      .. ++...| .  ......|+..++ +.+..+.+.-   +  .| ....|..+...+.+.|++++|...|++..+.+  +
T Consensus       195 ~~-~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~  267 (296)
T PRK11189        195 LD-KEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V  267 (296)
T ss_pred             CC-ccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence            32 222222 2  223345665554 3444444221   1  11 23468889999999999999999999998754  3


Q ss_pred             CCHHHHHH
Q 015370          368 FDISACNR  375 (408)
Q Consensus       368 ~~~~~~~~  375 (408)
                      ||..-+..
T Consensus       268 ~~~~e~~~  275 (296)
T PRK11189        268 YNFVEHRY  275 (296)
T ss_pred             chHHHHHH
Confidence            56555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=8.9e-08  Score=76.64  Aligned_cols=190  Identities=9%  Similarity=-0.015  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~  168 (408)
                      +...|.-.|...|+...|.+-+++..+..  +.+..+|..+...|.+.|..+.|.+.|++.... +.+..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            34557778899999999999999999875  555678888999999999999999999987666 456889999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK  247 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  247 (408)
                      ..|++++|...|++....- ..--..+|..+.-+..+.|+++.|...|++..+.... ...+.-.+.+...+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            9999999999999877642 3334568888888889999999999999998876433 3456777788888899999999


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          248 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      .+++..... + .++..+.-..|..-...|+.+.+.+
T Consensus       194 ~~~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         194 LYLERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             HHHHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            999998884 3 3788887788888888888888877

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.08  E-value=3.2e-06  Score=76.81  Aligned_cols=308  Identities=9%  Similarity=-0.078  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChH-HHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHH---H
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDS-DYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTA---L  163 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~---l  163 (408)
                      ..|..+...+...|+.+.+.+.+....+.....++.. ........+...|++++|.+++++.....| |...+..   +
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~   86 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGA   86 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHH
Confidence            3455555666666777777777776665432233322 222234456778899999998888665544 4444442   2


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      .......+..+.+.+.+.. .....+........+...+...|++++|...+++..+... .+...+..+..++...|++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCH
Confidence            2222234556666666655 2222223344555667788999999999999999998653 2567788888899999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc-cCccchH-H--HHHHHHHhcCCHHH
Q 015370          244 DQVKKFLDEMSCDSGGSDDW--VKYVNLVNIYITASHLVNAESSTLVEAEKSIT-QRQWITY-D--FLIILYAGLGNKDK  317 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~  317 (408)
                      ++|..++++........++.  ..|..+...+...|++++|.. +++......+ .+..... +  .++.-+...|....
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA-IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH-HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            99999999988742222343  346688999999999999999 8888754433 1222211 2  33334444554433


Q ss_pred             HHHH--HHHHHhccCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCCh
Q 015370          318 IDQI--WKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATS-------DFDISACNRLLGAFSDVGLT  386 (408)
Q Consensus       318 a~~~--~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~  386 (408)
                      +.+.  ...............+  .....++...|+.++|..+++.+......       ...+...-....++...|++
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~  323 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY  323 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence            3333  2111111111011122  24667788999999999999998763211       11233333344456689999


Q ss_pred             HHHHHHHHHHHhc
Q 015370          387 EKANEFHMLLLQK  399 (408)
Q Consensus       387 ~~a~~~~~~m~~~  399 (408)
                      ++|.+.+......
T Consensus       324 ~~A~~~L~~al~~  336 (355)
T cd05804         324 ATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.02  E-value=5.8e-06  Score=75.87  Aligned_cols=334  Identities=12%  Similarity=0.094  Sum_probs=185.3

Q ss_pred             HHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccC-----CCCChHHHHHHHHH
Q 015370           59 KSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKE-----FVLSDSDYATRIDL  133 (408)
Q Consensus        59 ~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~  133 (408)
                      +.+......-|..+..++++..+    .++..-.-.|..+++.+++++|-+.+........     -+.+...|..+.+.
T Consensus       144 yl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl  219 (835)
T KOG2047|consen  144 YLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL  219 (835)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence            34444434444566666666654    3444456677788888888888888877754321     13445566666666


Q ss_pred             HHhhcCh---HHHHHHHhcCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 015370          134 MTKVFGI---HSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV---  205 (408)
Q Consensus       134 ~~~~g~~---~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---  205 (408)
                      .++.-+.   -....++..+...-+|  ...|++|.+.|.+.|.++.|..+|++....-+  +..-|+.+.++|+.-   
T Consensus       220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~  297 (835)
T KOG2047|consen  220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEES  297 (835)
T ss_pred             HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHH
Confidence            6554432   2233455555554455  56789999999999999999999988766421  233333333333221   


Q ss_pred             ---------------------------------------------------------------CCHHHHHHHHHHHHhCC
Q 015370          206 ---------------------------------------------------------------GQVEKVALVVEEIKRKN  222 (408)
Q Consensus       206 ---------------------------------------------------------------g~~~~a~~~~~~m~~~g  222 (408)
                                                                                     |+..+....|.+..+. 
T Consensus       298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-  376 (835)
T KOG2047|consen  298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-  376 (835)
T ss_pred             HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-
Confidence                                                                           2222222233333221 


Q ss_pred             CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          223 VVPD------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       223 ~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      +.|-      ...|..+.+.|-..|+++.|..+|++..+. ..+--   ..+|..-..+-.+..+++.|++ ++.+....
T Consensus       377 vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~-lm~~A~~v  454 (835)
T KOG2047|consen  377 VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALK-LMRRATHV  454 (835)
T ss_pred             cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHH-HHHhhhcC
Confidence            1111      123555566666777777777777776663 22211   3445555566666667777777 55554322


Q ss_pred             cccC-----------------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370          294 ITQR-----------------QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI  356 (408)
Q Consensus       294 ~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  356 (408)
                      ...|                 +...|...++.--..|-++....+|+++.+..+-.. ........-+-...-++++.++
T Consensus       455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~  533 (835)
T KOG2047|consen  455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKA  533 (835)
T ss_pred             CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHH
Confidence            1111                 123455556655667777777777777776654322 1111111112234456777777


Q ss_pred             HHHHHhhCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCC
Q 015370          357 IDQWKQSATSDFDI-SACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       357 ~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      +++-+.... -|++ ..|++-+.-+.+   .-+.+.|..+|++.++ |+.|.
T Consensus       534 YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~  583 (835)
T KOG2047|consen  534 YERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE  583 (835)
T ss_pred             HHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence            776655432 2443 355555544443   3457788888888877 66664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1e-07  Score=84.27  Aligned_cols=219  Identities=13%  Similarity=0.077  Sum_probs=113.3

Q ss_pred             hcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          137 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV  215 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  215 (408)
                      .|+.-.|..-|+......| +...|--+...|....+-++..+.|++..+.+ +-|+.+|..-...+.-.+++++|..=|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            3444444444444433322 22225455555555566666666666655554 335555555555555556666666666


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370          216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  295 (408)
                      ++.+..... +...|.-+--+..+.++++++...|++.+++  +|..+.+|+.....+...+++++|.+ .++.....-+
T Consensus       418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k-~YD~ai~LE~  493 (606)
T KOG0547|consen  418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK-QYDKAIELEP  493 (606)
T ss_pred             HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH-HHHHHHhhcc
Confidence            655553221 3344444444445555666666666666553  44555556666666666666666665 5555444322


Q ss_pred             cCc-----cchH--HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          296 QRQ-----WITY--DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       296 ~~~-----~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      ..+     ..++  -.++..-. .+++..|.+++++..+...+ ....|..|...-.+.|+.++|+++|++-..
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            211     1111  11111111 26667777777665554322 334566666666777777777777766543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.96  E-value=7e-08  Score=83.61  Aligned_cols=221  Identities=13%  Similarity=0.040  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 015370          128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVG  206 (408)
Q Consensus       128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g  206 (408)
                      ..+.+++...|+.+.++.-...-.  .|.......+...+...++-+.+..-+++.......+ +..........+...|
T Consensus        39 ~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~  116 (290)
T PF04733_consen   39 FYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG  116 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence            334455555565554433222211  3444444444443333333344444443333222221 2122222223334456


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH----HHHcCchhhh
Q 015370          207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI----YITASHLVNA  282 (408)
Q Consensus       207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~~~~~~a  282 (408)
                      ++++|++++...      .+.......+..|.+.++++.|.+.++.|.+-   ..|. +...+..+    +.-.+.+.+|
T Consensus       117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred             CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence            666666655431      23444555556666666666666666666552   1222 12222222    2222345666


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWK  361 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~  361 (408)
                      .. +|+++.+. .+++..+.+.+..++...|++++|.+++.+....+.. ++.+...++.+....|+. +.+.+++.++.
T Consensus       187 ~y-~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  187 FY-IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             HH-HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             HH-HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            66 66665433 2345555566666666666666666666655443322 444555555555555655 45556666665


Q ss_pred             hh
Q 015370          362 QS  363 (408)
Q Consensus       362 ~~  363 (408)
                      ..
T Consensus       264 ~~  265 (290)
T PF04733_consen  264 QS  265 (290)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-06  Score=76.28  Aligned_cols=270  Identities=10%  Similarity=-0.050  Sum_probs=200.9

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD-SDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYT  161 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~  161 (408)
                      .+-+++....+.+.+...|+..+|+..|++....+   |+. .......-.+.+.|+.+....+...+.... .+...|-
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf  304 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF  304 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence            56678889999999999999999999999998743   432 233333445577888888877766665432 3455565


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                      .-+......++++.|+.+-++.++.+ +.++..|-.-...+...|+.++|.-.|+..+.... -+..+|.-++.+|...|
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence            55666667789999999999988875 44566776667788899999999999999887532 36789999999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HH-HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370          242 NIDQVKKFLDEMSCDSGGSDDWVKYVNLV-NI-YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      ++.+|...-++..+.  .+.+..+...+. .. +-....-++|.+ +++.-....+. -....+.+...+...|..+.+.
T Consensus       383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKk-f~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKK-FAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHH-HHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence            999998888777663  344555444442 22 222334577877 66654443222 2445667778888999999999


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       320 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      .++++....  .||....+.|.+.+...+.+.+|++.|....+.+
T Consensus       459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            999987765  7899999999999999999999999999887643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.92  E-value=3.3e-05  Score=68.59  Aligned_cols=246  Identities=12%  Similarity=0.053  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHhhcChHHHHHHHhcC
Q 015370           72 ATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD-SDYATRIDLMTKVFGIHSGERYFEGL  150 (408)
Q Consensus        72 a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~  150 (408)
                      |.+|++.-..-. .-+...|-..+..=.+...+..|..+|++....   -|-+ ..|-..+..=-..|++..|.++|+.-
T Consensus        92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaRqiferW  167 (677)
T KOG1915|consen   92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGARQIFERW  167 (677)
T ss_pred             HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            344444443322 334444555666666677777777777777653   2332 23444444455677777777777776


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370          151 PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY  230 (408)
Q Consensus       151 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  230 (408)
                      ..-.|+...|.+.|+.=.+-+.++.|..+|++..-.  .|++.+|--....=-+.|+...|..+|+...+. + -|...-
T Consensus       168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~-~~d~~~  243 (677)
T KOG1915|consen  168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF-L-GDDEEA  243 (677)
T ss_pred             HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-h-hhHHHH
Confidence            666678888888887777777788888888777664  377777777777777777777777777766643 1 122222


Q ss_pred             HHHHHHH----HhcCCHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCchhhhHHH-------HHHHHHHhcccC
Q 015370          231 NLWISSC----AATLNIDQVKKFLDEMSCDSGGSDD--WVKYVNLVNIYITASHLVNAESS-------TLVEAEKSITQR  297 (408)
Q Consensus       231 ~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~~~~~~  297 (408)
                      ..+..++    .++..++.|.-+|+-..+.  ++-+  ...|..+...--+-|+.......       -++.+...+ +-
T Consensus       244 e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~  320 (677)
T KOG1915|consen  244 EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence            2222232    3345566666666665552  2222  23344444443344443332221       112222222 22


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      |-.+|--.+..-...|+.+...++|++....
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan  351 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN  351 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence            4455555555555666666666666665543

>PF12854 PPR_1: PPR repeat

Probab=98.89  E-value=2.6e-09  Score=59.42  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=16.9

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          187 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       187 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      |++||..|||+||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.89  E-value=1.1e-06  Score=80.99  Aligned_cols=265  Identities=14%  Similarity=0.134  Sum_probs=170.4

Q ss_pred             HHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHH----HHHh--CCCCCChhhHHHHHHH
Q 015370          129 TRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT-EKAEELFE----RVKQ--SNLSFNALMYNEMMTL  201 (408)
Q Consensus       129 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~----~m~~--~~~~p~~~~~~~li~~  201 (408)
                      ..-..++..+.+++|...++.....    ..+..|...+...-+. ......+.    .+..  .+.|--..+...+...
T Consensus       133 l~~~~~~~~~~l~ea~~~~e~~~~~----~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~  208 (508)
T KOG1840|consen  133 LLAAIQALLLQLDEAEQGQEQAAVT----PVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEM  208 (508)
T ss_pred             HHHHHHHHHHHhhhhhccccccccc----chhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            3334445566677777666655432    1133344333332222 11111111    1222  2233334577779999


Q ss_pred             HHhcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCC-CHHHHHH
Q 015370          202 YMSVGQVEKVALVVEEIKRK-----NV-VPDIF-TYNLWISSCAATLNIDQVKKFLDEMSCD----SG-GSD-DWVKYVN  268 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~~  268 (408)
                      |...|++++|+.+++...+.     |. .|... ..+.+...|...+++++|..+|+++...    .| ..| -..+++.
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            99999999999999887653     21 23332 3334666888899999999999887542    11 222 2345788


Q ss_pred             HHHHHHHcCchhhhHHHHHHHHHHhc------ccCcc-chHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCCC----h
Q 015370          269 LVNIYITASHLVNAESSTLVEAEKSI------TQRQW-ITYDFLIILYAGLGNKDKIDQIWKSLRMT---KQKMT----S  334 (408)
Q Consensus       269 li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~  334 (408)
                      |..+|.+.|++++|.. .++...+-.      ..|.+ ..++.+...|...+++++|..++....+.   -+.++    .
T Consensus       289 La~ly~~~GKf~EA~~-~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a  367 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEE-YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA  367 (508)
T ss_pred             HHHHHhccCChHHHHH-HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence            8889999999999988 666554311      12222 34567777888999999999998865432   12222    3


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          335 RNYICILSSYLMLGHLKEVGEIIDQWKQSA-----TSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       335 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .+++.|...|.+.|++++|.+++++.+...     ...+. -..++.|...|.+.+++.+|.++|.+...
T Consensus       368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            468889999999999999999999886531     11222 34577899999999999999999987543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=4.6e-06  Score=71.13  Aligned_cols=130  Identities=10%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHh
Q 015370          268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-ILSSYLM  346 (408)
Q Consensus       268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~  346 (408)
                      ++..++.-..++++.+. .+..+..-....|...+ .+..+++..|++.+|+++|-++....++ |..+|.+ |.++|.+
T Consensus       364 smAs~fFL~~qFddVl~-YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~  440 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLT-YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR  440 (557)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence            34444444455555555 55555444444444444 4677888899999999999877655544 5666655 6778899


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370          347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP  403 (408)
Q Consensus       347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  403 (408)
                      .+..+.|++++-++...   .........+..-|.+.+.+--|.+.|+.+...+-.|
T Consensus       441 nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  441 NKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             cCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            99999998887664321   1122334455678889999999999999988744333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=1.2e-06  Score=72.82  Aligned_cols=261  Identities=12%  Similarity=0.007  Sum_probs=160.9

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH-HHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR-IDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~  165 (408)
                      +...+..+..+|-...++..|-+.++++...   .|...-|... ...+-+.+.+.+|+++...|... ++...-..-+.
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLq  118 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQ  118 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence            5555666666777777777777777777653   4554444432 24555666777777777666542 22111111122


Q ss_pred             H--HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          166 L--YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       166 ~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      +  .-..+++..+..++++....|   +..+.+.......+.|+++.|.+-|+...+-+---....|+.-+. ..+.|++
T Consensus       119 aAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qy  194 (459)
T KOG4340|consen  119 AAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQY  194 (459)
T ss_pred             HHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhH
Confidence            2  223466666777776666544   566666666667789999999999998876543335567876554 4467899


Q ss_pred             HHHHHHHHHHhcCCCCCCCH----------------------------HHHHHHHHHHHHcCchhhhHHHHHHHHHHh-c
Q 015370          244 DQVKKFLDEMSCDSGGSDDW----------------------------VKYVNLVNIYITASHLVNAESSTLVEAEKS-I  294 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~----------------------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~  294 (408)
                      +.|.++..++.++ |+...+                            ..+|.-...+.+.++++.|.+ .+.+|--+ .
T Consensus       195 asALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e-aLtDmPPRaE  272 (459)
T KOG4340|consen  195 ASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE-ALTDMPPRAE  272 (459)
T ss_pred             HHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH-HhhcCCCccc
Confidence            9999999998885 665332                            112222334567778888877 55444211 1


Q ss_pred             ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          295 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       295 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      ...|.+|...+.-.- -.+++.+..+-+.-+...++ -...||..++-.||+..-++-|-+++.+
T Consensus       273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            123556665543221 23455555555555555544 3566899999999999999999888876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.87  E-value=2e-07  Score=80.81  Aligned_cols=223  Identities=10%  Similarity=0.007  Sum_probs=146.9

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC---CCHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA---KTSETYTALL  164 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ll  164 (408)
                      ......+.+++...|+++.++   ..+...  -.|.......+...+....+-+.+..-+++.....   .+........
T Consensus        35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A  109 (290)
T PF04733_consen   35 LERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA  109 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            344556777888888876544   444333  25666666555555554455666666665544332   2333333334


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhc
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS----CAAT  240 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~  240 (408)
                      ..+...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.+.  ..|. +...+..+    +...
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCc
Confidence            6677789999998888643      25677788888999999999999999999875  3343 33334443    3334


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH-HHHH
Q 015370          241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK-DKID  319 (408)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~  319 (408)
                      +.+.+|..+|+++.++  ..+++.+.+.+..++...|++++|.+ ++.+.....+. +..+...++......|+. +.+.
T Consensus       181 e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~-~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEE-LLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             TCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHH-HHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             hhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHH
Confidence            5688999999998874  45788888999999999999999999 77776654433 566777777777777877 6677


Q ss_pred             HHHHHHHhc
Q 015370          320 QIWKSLRMT  328 (408)
Q Consensus       320 ~~~~~m~~~  328 (408)
                      +++.+++..
T Consensus       257 ~~l~qL~~~  265 (290)
T PF04733_consen  257 RYLSQLKQS  265 (290)
T ss_dssp             HHHHHCHHH
T ss_pred             HHHHHHHHh
Confidence            888887765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.85  E-value=2e-06  Score=85.27  Aligned_cols=244  Identities=14%  Similarity=0.099  Sum_probs=146.6

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          142 SGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSF---NALMYNEMMTLYMSVGQVEKVALVVEE  217 (408)
Q Consensus       142 ~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~  217 (408)
                      .|..+-..+...+.+...|-..|......++.++|.+++++.+.. ++.-   -...|.++++.-...|.-+...++|++
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            333333334443334666777777777777777777777776543 1111   123566666666666666777777777


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC
Q 015370          218 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR  297 (408)
Q Consensus       218 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  297 (408)
                      ..+. .. .-..|..|...|.+.+++++|.++++.|.++.+  -...+|...+..+.+.++-+.|.. ++.+..+..++.
T Consensus      1523 Acqy-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1523 ACQY-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHh-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcchh
Confidence            7664 11 224566677777777777777777777777544  455667777777777777777777 666666655543


Q ss_pred             c-cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH-HHHHH
Q 015370          298 Q-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-SACNR  375 (408)
Q Consensus       298 ~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~  375 (408)
                      . .....-.+..-.+.|+.+.+..+|+.....-++ -...|+..|+.=.+.|+.+.+..+|++.+..+...... ..|..
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence            2 222333444446677777777777766655322 33467777777777777777777777777765322222 34555


Q ss_pred             HHHHHHhcCChHHHHH
Q 015370          376 LLGAFSDVGLTEKANE  391 (408)
Q Consensus       376 li~~~~~~g~~~~a~~  391 (408)
                      .+..-.+.|+-+.+..
T Consensus      1677 wLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             HHHHHHhcCchhhHHH
Confidence            5554445565544433

>PF12854 PPR_1: PPR repeat

Probab=98.85  E-value=5.3e-09  Score=58.16  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=28.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      +|+.||..||+++|++|++.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788888888888888888888888888888874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.84  E-value=2.9e-06  Score=84.08  Aligned_cols=231  Identities=9%  Similarity=0.045  Sum_probs=178.5

Q ss_pred             CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-C-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 015370          121 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-A-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM  194 (408)
Q Consensus       121 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  194 (408)
                      +-+...|-..|......++.+.|.+++++.... .     .-...|.++++.-..-|.-+...++|+++.+.. . .-..
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence            344677888899999999999999999987654 1     236688899988888898899999999999874 1 2457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI  274 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  274 (408)
                      |..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++++..+...-.-......-.+..-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            889999999999999999999999875 3346778999999999999999999999998873211223444566677778


Q ss_pred             HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHH
Q 015370          275 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKE  352 (408)
Q Consensus       275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~  352 (408)
                      +.|+.+.++. +|+.....-++ -...|+..|+.-.+.|+.+.+..+|++....++.|-.  ..|.-.+..=-..|+-+.
T Consensus      1612 k~GDaeRGRt-lfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRT-LFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hcCCchhhHH-HHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            8999999999 88887776554 6778999999999999999999999999988876532  223333333333444444


Q ss_pred             HHHH
Q 015370          353 VGEI  356 (408)
Q Consensus       353 A~~~  356 (408)
                      ++.+
T Consensus      1690 vE~V 1693 (1710)
T KOG1070|consen 1690 VEYV 1693 (1710)
T ss_pred             HHHH
Confidence            4333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=6.1e-05  Score=70.82  Aligned_cols=314  Identities=12%  Similarity=0.052  Sum_probs=180.3

Q ss_pred             HHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC--
Q 015370           77 QRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA--  154 (408)
Q Consensus        77 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--  154 (408)
                      .++......-|...|..+.-++...|+++.+-+.|++...-  ..-....|..+-..+...|.-..|..++++-....  
T Consensus       312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            33444445678899999999999999999999999988753  23345667777777777777777777777644432  


Q ss_pred             CC-HHHHHHHHHHHH-cCCCHHHHHHHHHHHHh-----------------------------------------------
Q 015370          155 KT-SETYTALLHLYA-GAKWTEKAEELFERVKQ-----------------------------------------------  185 (408)
Q Consensus       155 ~~-~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~-----------------------------------------------  185 (408)
                      |+ ...+-..-..|. +.+.+++++..-.+..+                                               
T Consensus       390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~  469 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE  469 (799)
T ss_pred             CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence            32 222222222222 22444444444444333                                               


Q ss_pred             ---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 015370          186 ---SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD  262 (408)
Q Consensus       186 ---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  262 (408)
                         .+ +-|+.+...+---|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+......|....
T Consensus       470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~  548 (799)
T KOG4162|consen  470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV  548 (799)
T ss_pred             HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence               11 11222222223334455666666666666666544445666666666666666666666665554443222000


Q ss_pred             ------------------HHHHH---------------------------------------------------------
Q 015370          263 ------------------WVKYV---------------------------------------------------------  267 (408)
Q Consensus       263 ------------------~~~~~---------------------------------------------------------  267 (408)
                                        ..|..                                                         
T Consensus       549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~  628 (799)
T KOG4162|consen  549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG  628 (799)
T ss_pred             hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence                              00011                                                         


Q ss_pred             --------------------------HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 015370          268 --------------------------NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI  321 (408)
Q Consensus       268 --------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  321 (408)
                                                .....+.+.+..++|.. .+.+..+- .+-....|......+...|..++|.+.
T Consensus       629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~-CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~a  706 (799)
T KOG4162|consen  629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS-CLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEA  706 (799)
T ss_pred             cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence                                      11111112222222221 11111110 011112223333344455667777777


Q ss_pred             HHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          322 WKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGE--IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       322 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      |......  .|+ +....++..++.+.|+..-|..  ++.++.+.+  +.+...|..+...+.+.|+.++|.+.|+...+
T Consensus       707 f~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  707 FLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            7655443  454 4467788889999998888877  899998865  45888999999999999999999999998876


Q ss_pred             c
Q 015370          399 K  399 (408)
Q Consensus       399 ~  399 (408)
                      .
T Consensus       783 L  783 (799)
T KOG4162|consen  783 L  783 (799)
T ss_pred             h
Confidence            3

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.81  E-value=4.3e-05  Score=65.12  Aligned_cols=303  Identities=12%  Similarity=-0.031  Sum_probs=214.3

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH---HHHHHhhcChHHHHHHHhcCCCCCCCHHHHH-
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR---IDLMTKVFGIHSGERYFEGLPLSAKTSETYT-  161 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-  161 (408)
                      .++.-..-+-+.+...|.+..|+.-|+...+-     |+..|.++   ...|...|+-..|+.=+....+..||-..-. 
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~-----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi  110 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG-----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence            45555666888889999999999999998763     34444443   4567788888888877777766667643322 


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCC--Ch----------h--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSF--NA----------L--MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI  227 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~----------~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  227 (408)
                      --...+.+.|++++|..=|+..++....-  ..          .  .....+..+.-.|+...|......+.+-. +.|.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda  189 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA  189 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence            22466789999999999999998875210  11          1  12233455667899999999999998853 3477


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC--ccchHHHH
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYDFL  305 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l  305 (408)
                      ..|..-..+|...|++..|+.=++...+-  -..+..++--+-..+...|+.+.++. .+.+..+-.+..  ....|-.|
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~-~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLK-EIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHH-HHHHHHccCcchhhHHHHHHHH
Confidence            88888889999999999998888777662  34566677777888889999999988 666655543221  11122211


Q ss_pred             ---------HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 015370          306 ---------IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI---CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC  373 (408)
Q Consensus       306 ---------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  373 (408)
                               +......+++.++++-.+...+.........|+   .+-.++...|++.+|++...+..+..  +.|+.++
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l  344 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHH
Confidence                     222345677888888777776664442333443   45667778899999999999988742  3357888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          374 NRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       374 ~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .-=..+|.-...++.|..=|+...+.
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            77888999999999999999988873

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.78  E-value=5.6e-05  Score=69.71  Aligned_cols=319  Identities=11%  Similarity=0.025  Sum_probs=185.2

Q ss_pred             CcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370           70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEG  149 (408)
Q Consensus        70 ~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  149 (408)
                      +.|.+....-.+ +-.-+.+.|+.+.-.+....++++|++.|......+  +-|...+.-+--.-++.|+++.....-.+
T Consensus        58 ~ea~~~vr~glr-~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~  134 (700)
T KOG1156|consen   58 EEAYELVRLGLR-NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQ  134 (700)
T ss_pred             HHHHHHHHHHhc-cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            444444432222 344456677777777777889999999999998865  55566777666666777787776666555


Q ss_pred             CCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChhhHHHHHH------HHHhcCCHHHHHHHHHHHHhC
Q 015370          150 LPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMT------LYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       150 ~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      +.+.. .....|..+..++.-.|+...|..++++..+.. -.|+...|.....      ...+.|.+++|++.+..-...
T Consensus       135 LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~  214 (700)
T KOG1156|consen  135 LLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ  214 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence            54443 457788999999999999999999999888764 2466666654433      335678888888877655443


Q ss_pred             CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH----------
Q 015370          222 NVVPDIFTYN-LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA----------  290 (408)
Q Consensus       222 g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----------  290 (408)
                       + .|...+. +-...+.+.+++++|..++..+..+  .|.+..-|-.+..++.+..+.-++...++...          
T Consensus       215 -i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p  290 (700)
T KOG1156|consen  215 -I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP  290 (700)
T ss_pred             -H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence             2 2444333 3355677889999999999998884  33334444445555544444444442122222          


Q ss_pred             ------------------------HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH----hccC----------CC
Q 015370          291 ------------------------EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR----MTKQ----------KM  332 (408)
Q Consensus       291 ------------------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~----------~p  332 (408)
                                              .+.|.+   .++..+...|-.-...+-..++...+.    ..|.          .|
T Consensus       291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P  367 (700)
T KOG1156|consen  291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP  367 (700)
T ss_pred             hhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence                                    222211   122222222221111111111111111    1110          22


Q ss_pred             Chhh--HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          333 TSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       333 ~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                      ....  +-.++..+-+.|+++.|..+++..++..  +.-+..|..-.+.+...|++++|..++++..+.+
T Consensus       368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            2222  3346666777777777777777776642  1223455555566777777777777777766543

>PLN02789 farnesyltranstransferase

Probab=98.77  E-value=6.9e-06  Score=72.25  Aligned_cols=179  Identities=9%  Similarity=0.046  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc-ChHHHHHHHhcCCCC-CCCHHHHHHHHHHHH
Q 015370           91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF-GIHSGERYFEGLPLS-AKTSETYTALLHLYA  168 (408)
Q Consensus        91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~  168 (408)
                      +..+-..+...++.++|+.+.+++.+..  +-+...|+....++...| ++++++..++++... +.+..+|+.....+.
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            3344445556678889999999988753  333456666666666666 578888888877665 345677776666666


Q ss_pred             cCCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH
Q 015370          169 GAKWT--EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNI  243 (408)
Q Consensus       169 ~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~  243 (408)
                      +.|+.  ++++.+++++.+.+ +-|..+|+....++.+.|+++++++.++++++.++. |..+|+.....+.+.   |..
T Consensus       118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence            66653  67788888888776 457788888888888888899999999988887655 556666655554443   212


Q ss_pred             ----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 015370          244 ----DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT  275 (408)
Q Consensus       244 ----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  275 (408)
                          +...++..++..  ..+-+...|+-+...+..
T Consensus       196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhc
Confidence                344555544444  124455555555555544

>PLN02789 farnesyltranstransferase

Probab=98.76  E-value=2.9e-05  Score=68.41  Aligned_cols=212  Identities=7%  Similarity=-0.046  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMS  204 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  204 (408)
                      +..+-..+...++.++|+.+.+++....| +..+|+.--.++.+.| ++++++..++++...+ +-+..+|+.-...+.+
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~  118 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence            33344444555566666666666554433 3445554444555555 4566666666666554 3344555555444445


Q ss_pred             cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc---Cch
Q 015370          205 VGQV--EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SHL  279 (408)
Q Consensus       205 ~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~  279 (408)
                      .|+.  ++++.+++.+.+...+ |..+|+...-++...|+++++++.++++.+.  .+-+...|+.....+.+.   |..
T Consensus       119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccc
Confidence            5542  4556666666554433 4555665555666666666666666666552  233444455444444333   111


Q ss_pred             ----hhhHHHHHHHHHHhcccCccchHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370          280 ----VNAESSTLVEAEKSITQRQWITYDFLIILYAGL----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL  345 (408)
Q Consensus       280 ----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  345 (408)
                          ++... ....+....+ .|...|+.+...+...    +...+|...+.+....++ .+......|++.|+
T Consensus       196 ~~~~e~el~-y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~  266 (320)
T PLN02789        196 EAMRDSELK-YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC  266 (320)
T ss_pred             cccHHHHHH-HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence                22333 3333333322 2555555555555442    223345455444333221 12333444455444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.75  E-value=2.7e-05  Score=80.02  Aligned_cols=306  Identities=11%  Similarity=0.042  Sum_probs=192.8

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccC-C----CCC--hHHHHHHHHHHHhhcChHHHHHHHhcCCCC--CCC----HHH
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKE-F----VLS--DSDYATRIDLMTKVFGIHSGERYFEGLPLS--AKT----SET  159 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~  159 (408)
                      .....+...|+++++...+......-. .    .+.  ......+...+...|++++|...+++....  ..+    ...
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            344455677899999888887754310 0    111  112222334556789999999888875432  112    234


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CH
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQS----NL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVV--P-DI  227 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~  227 (408)
                      .+.+...+...|++++|...+++....    |- .+...++..+...+...|++++|...+++...    .|..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            566777788899999999999887642    21 11123556667778889999999999887654    2221  1 23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc-cchH-
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITY-  302 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-  302 (408)
                      ..+..+...+...|++++|...+++....   .+.......+..+...+...|+.+.|.. .+........... ...+ 
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR-YLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhcccccHhHh
Confidence            34445556677789999999988876542   1211123345556778889999999998 7777654322111 1111 


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCC-CHH
Q 015370          303 ----DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSA---TSDF-DIS  371 (408)
Q Consensus       303 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~  371 (408)
                          ...+..+...|+.+.|.+.+............   ..+..+..++...|+.++|...+++.....   ...+ ...
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~  732 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR  732 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence                11223445578999999888765432111111   113456677889999999999999876531   1111 234


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      +...+..++.+.|+.++|...+.+..+.
T Consensus       733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        733 NLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5666778888999999999999988764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.8e-06  Score=78.20  Aligned_cols=253  Identities=12%  Similarity=0.020  Sum_probs=190.6

Q ss_pred             HHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 015370          133 LMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV  211 (408)
Q Consensus       133 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  211 (408)
                      -+.+.|++.+|.-.|+...... .+...|--|.......++-..|+..+++..+.+ +-|..+.-.|.-.|...|.-.+|
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            4467888999998898866654 468999999999999999999999999999986 55778888888899999999999


Q ss_pred             HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370          212 ALVVEEIKRKNVV--------PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       212 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  283 (408)
                      ++.++..+....+        ++...-..  ..+.....+.+..++|-++....+..+|+.++..|.-.|.-.|++++|.
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            9999888654311        00000000  1222333455677777777665566688889999999999999999999


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      . .|+......+. |...||-|...++...+.++|+.-|.+.++.  +|+.. ...-|.-.|...|.+++|...|-..+.
T Consensus       451 D-cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  451 D-CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             H-HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9 88888777655 8899999999999999999999999988775  55432 333466678899999999998876543


Q ss_pred             ---h-----CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015370          363 ---S-----ATSDFDISACNRLLGAFSDVGLTEKANEF  392 (408)
Q Consensus       363 ---~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~  392 (408)
                         +     +...++..+|.+|=.++.-.++.|-+.+.
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence               2     11122346788887777777877755443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.72  E-value=1.8e-06  Score=80.27  Aligned_cols=217  Identities=16%  Similarity=0.056  Sum_probs=166.8

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG  169 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~  169 (408)
                      .=..+...+...|-...|+.+|++.          ..|.-.|.+|+..|+.++|..+..+..+.+||...|..+.+....
T Consensus       400 ~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence            3345667777888888888888875          345566778888888888888877766667888899998888888


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015370          170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF  249 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  249 (408)
                      ..-+++|.++++....+       +-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+..+..+.++++.+.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence            88888888888775543       111111222347889999999887766432 2456777777788889999999999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      |.....  +-+.+...||.+-.+|.+.++-.+|.. .+.+..+.. ..+...|...+....+.|.+++|.+.+.++...
T Consensus       542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~-~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR-KLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH-HHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            998887  566777889999999999999999999 888888877 446777877888888999999999999877543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.72  E-value=4.9e-06  Score=70.72  Aligned_cols=190  Identities=12%  Similarity=-0.004  Sum_probs=127.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHH
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-VKY  266 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~  266 (408)
                      .....+-.+...+.+.|++++|...|+++...... |. ..++..+..++...|++++|...++++.+...-.+.. .++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            35667888888899999999999999998775321 11 2456777888889999999999999988743222221 234


Q ss_pred             HHHHHHHHHc--------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHH
Q 015370          267 VNLVNIYITA--------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI  338 (408)
Q Consensus       267 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  338 (408)
                      ..+..++.+.        |+.++|.+ .+..+....+. +...+..+.....    ...      ...        ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence            5555556554        67788888 77777665433 2222222211100    000      000        0112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          339 CILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+...+.+.|++++|...+++..+...-.| ....+..+..++.+.|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455678899999999999999987642223 3567888999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=2.1e-06  Score=79.82  Aligned_cols=235  Identities=11%  Similarity=-0.004  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      .-..+...+...|-...|..+|+++.       .|.-+|.+|+..|+..+|..+..+..++  +||+..|..+.+.....
T Consensus       400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence            33456678888999999999998764       6888999999999999999999888884  68999999999988777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH
Q 015370          206 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS  285 (408)
Q Consensus       206 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  285 (408)
                      .-+++|.++.+.....       +-..+.....+.++++++.+.|+.-.+-  .+....+|-.+..++.+.+++..|.+ 
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~-  540 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVK-  540 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHH-
Confidence            7788999888765432       1111222233468999999999887663  34566778888999999999999999 


Q ss_pred             HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 015370          286 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT  365 (408)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  365 (408)
                      .|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+.|.+++|++.++++.+...
T Consensus       541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            777655443 447789999999999999999999999998877633 444555666677889999999999998875432


Q ss_pred             CCCCHHHHHHHHHHHH
Q 015370          366 SDFDISACNRLLGAFS  381 (408)
Q Consensus       366 ~~~~~~~~~~li~~~~  381 (408)
                      ...|...-..++....
T Consensus       619 ~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  619 KYKDDEVLLIIVRTVL  634 (777)
T ss_pred             hcccchhhHHHHHHHH
Confidence            2234444444444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.70  E-value=1e-05  Score=68.71  Aligned_cols=187  Identities=11%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FT  229 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~  229 (408)
                      .....+..+...+.+.|++++|...|+++.... +.+.   .++..+..++.+.|++++|...++++.+.......  .+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456777778888888888888888888887653 2222   46677788888888888888888888765332111  23


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccch
Q 015370          230 YNLWISSCAAT--------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT  301 (408)
Q Consensus       230 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  301 (408)
                      +..+..++...        |++++|.+.++.+.+.  .+.+...+..+.....    ......               ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~---------------~~  168 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA---------------GK  168 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH---------------HH
Confidence            44444455443        7788999999998874  2223322222211110    000000               01


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ...+...+.+.|++++|...++....... .| ....+..+..++.+.|++++|..+++.+...
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            12455668889999999999998877632 12 2456778999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.69  E-value=0.00015  Score=67.05  Aligned_cols=300  Identities=9%  Similarity=0.007  Sum_probs=188.2

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL  166 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~  166 (408)
                      -+..|-..+..+.++|++......|+.....-++.-...+|...+......+-++.+.+++++..+-  +...-+-.|..
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~  178 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEY  178 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence            3445556666777888888888888887765334444567888888888888888899988887763  44457778888


Q ss_pred             HHcCCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSN------LSFNALMYNEMMTLYMSVGQVE---KVALVVEEIKRKNVVPDI--FTYNLWIS  235 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~--~~~~~ll~  235 (408)
                      +++.+++++|-+.+.......      .+.+...|..+.+..+++-+.-   ....+++.+...  -+|.  ..|.+|.+
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD  256 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence            899999999998888876532      2456667777777766654433   233444444432  2443  56788888


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH----------------H-----HHHHHHH--
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES----------------S-----TLVEAEK--  292 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------------~-----~~~~~~~--  292 (408)
                      .|.+.|.+++|..++++....   ..+..-+..+.++|++-..-.-+..                +     -++.+..  
T Consensus       257 YYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr  333 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR  333 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence            888888888888888887663   2333344455555543222111111                0     1111111  


Q ss_pred             ---------hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------hhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          293 ---------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT------SRNYICILSSYLMLGHLKEVGEII  357 (408)
Q Consensus       293 ---------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~  357 (408)
                               ...+.++..|..-..  ...|+..+....|.+.... +.|-      ...|..+.+.|-..|+++.|..+|
T Consensus       334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif  410 (835)
T KOG2047|consen  334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF  410 (835)
T ss_pred             chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence                     111223333433222  2346666777777766543 2332      224667788888999999999999


Q ss_pred             HHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          358 DQWKQSATSDFDI----SACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       358 ~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ++..+.. . +.+    .+|..-...-.+..+++.|+.+.+....
T Consensus       411 eka~~V~-y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  411 EKATKVP-Y-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             HHhhcCC-c-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            9987653 1 222    3555555556677888888888777654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=0.00012  Score=66.83  Aligned_cols=317  Identities=12%  Similarity=0.054  Sum_probs=146.1

Q ss_pred             cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHH--HhhcChHHHHHHHh
Q 015370           71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM--TKVFGIHSGERYFE  148 (408)
Q Consensus        71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~  148 (408)
                      .|......+...+ +-+...+..=+-++.+.++|++|+.+.+.-...   ..+..-+  +=.+|  .+.+..++|+..++
T Consensus        30 ~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~--fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   30 EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFF--FEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhh--HHHHHHHHHcccHHHHHHHHh
Confidence            3444444444433 334444555555555666666665333322110   0000000  12222  34555666666555


Q ss_pred             cCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370          149 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF  228 (408)
Q Consensus       149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  228 (408)
                      ....  .|..+...-...+-+.|++++|+.+|+.+.+.+.    ..+..-+.+-+..-.  .+.. -+.+......| ..
T Consensus       104 ~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~a~~--a~l~-~~~~q~v~~v~-e~  173 (652)
T KOG2376|consen  104 GLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLLAVA--AALQ-VQLLQSVPEVP-ED  173 (652)
T ss_pred             cccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHH--Hhhh-HHHHHhccCCC-cc
Confidence            3322  2233333344455555666666666666655542    111111111110000  0000 01122222333 33


Q ss_pred             HHHHHHH---HHHhcCCHHHHHHHHHHHhc----CC--CCCCCHH-------HHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          229 TYNLWIS---SCAATLNIDQVKKFLDEMSC----DS--GGSDDWV-------KYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       229 ~~~~ll~---~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      +|..+.+   .+...|++.+|+++++...+    ..  +...+..       .-.-|...+-..|+.++|.. ++....+
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~  252 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS-IYVDIIK  252 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence            5554444   34568999999999998832    11  1111111       12235566778899999999 8888877


Q ss_pred             hcccCcc---chHHHHHHHHHhcCCHH----------------HHHHHHHHHH------------------------hcc
Q 015370          293 SITQRQW---ITYDFLIILYAGLGNKD----------------KIDQIWKSLR------------------------MTK  329 (408)
Q Consensus       293 ~~~~~~~---~~~~~li~~~~~~~~~~----------------~a~~~~~~m~------------------------~~~  329 (408)
                      ..+....   +.-|.|+..-....-++                .++.-+..=+                        ...
T Consensus       253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~  332 (652)
T KOG2376|consen  253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS  332 (652)
T ss_pred             hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            6554221   12222222111110000                0000000000                        000


Q ss_pred             CCCC--hhhHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHH
Q 015370          330 QKMT--SRNYICILSSYL--MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM--------LLL  397 (408)
Q Consensus       330 ~~p~--~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~  397 (408)
                      ..+.  ...+.+++..+.  +.....+|..++...-+.. ..-...+--.++......|+++.|.+++.        .+.
T Consensus       333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~  411 (652)
T KOG2376|consen  333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL  411 (652)
T ss_pred             CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence            1111  122334444332  2234677777777766543 22234455667777888999999999999        666


Q ss_pred             hcCCCCCC
Q 015370          398 QKNCAPTN  405 (408)
Q Consensus       398 ~~g~~p~~  405 (408)
                      +.+..|-.
T Consensus       412 ~~~~~P~~  419 (652)
T KOG2376|consen  412 EAKHLPGT  419 (652)
T ss_pred             hhccChhH
Confidence            66666643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=5.8e-05  Score=72.99  Aligned_cols=253  Identities=12%  Similarity=0.063  Sum_probs=155.0

Q ss_pred             HHHHHHHHHcCCC--CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhc
Q 015370           73 TNVIQRWVSEGNQ--ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEG  149 (408)
Q Consensus        73 ~~~l~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~  149 (408)
                      .++++..++.+.+  .|++.....++++...+-..+-+++++++.-....-. +...-|.|+-... .-+...+.++.++
T Consensus       967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~r 1045 (1666)
T KOG0985|consen  967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINR 1045 (1666)
T ss_pred             HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHH
Confidence            4556666665543  4677778889999999999999999999875431111 1222233332222 2334445555555


Q ss_pred             CCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---------------------CCCChhhHHHHHHHHHhcCC
Q 015370          150 LPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSN---------------------LSFNALMYNEMMTLYMSVGQ  207 (408)
Q Consensus       150 ~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---------------------~~p~~~~~~~li~~~~~~g~  207 (408)
                      +..- .|+      +...+...+-+++|+.+|++....+                     ---.+..|+.+..+-...|.
T Consensus      1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             hccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence            4432 122      1122223333444444443321110                     00135678888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHH
Q 015370          208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL  287 (408)
Q Consensus       208 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  287 (408)
                      ..+|.+-|-+.      -|...|.-+++...+.|.+++-..++...++. .-.|...+  .|+-+|++.++..+-.+ ++
T Consensus      1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~-fi 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEE-FI 1189 (1666)
T ss_pred             hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHH-Hh
Confidence            88887766322      26678888999999999999988888877774 55565554  88889999888777666 22


Q ss_pred             HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          288 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID  358 (408)
Q Consensus       288 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  358 (408)
                             ..||......+.+-|...|.++.|.-+|..         ...|..|...+...|++..|.+.-+
T Consensus      1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence                   346666666777777777777777776652         3345556666666666666655444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=0.00036  Score=63.89  Aligned_cols=342  Identities=13%  Similarity=0.118  Sum_probs=177.0

Q ss_pred             cccccccccccCCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcccHHHHHHHHHHHHhcc
Q 015370           40 SQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSEL-RHILKELRKSQRYKHALEISEWMVTHK  118 (408)
Q Consensus        40 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~  118 (408)
                      +.+.++..   .......+.-.+..+ ...+.-.+.+......+.......+ .-=..+..+.++.++|+..++...   
T Consensus        34 ~~~Kil~~---~pdd~~a~~cKvVal-Iq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~---  106 (652)
T KOG2376|consen   34 TANKILSI---VPDDEDAIRCKVVAL-IQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD---  106 (652)
T ss_pred             HHHHHHhc---CCCcHhhHhhhHhhh-hhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhccc---
Confidence            45555554   334444455555554 2233334444322233321112222 122334456789999999888221   


Q ss_pred             CCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CC----------------------------HHHHHHH---HHH
Q 015370          119 EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KT----------------------------SETYTAL---LHL  166 (408)
Q Consensus       119 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~----------------------------~~~~~~l---l~~  166 (408)
                        +.+..+...-...+-+.|++++|..+|+.+.... ++                            ..+|..+   .-.
T Consensus       107 --~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~  184 (652)
T KOG2376|consen  107 --RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACI  184 (652)
T ss_pred             --ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHH
Confidence              2344577777788999999999999999995542 11                            1133332   344


Q ss_pred             HHcCCCHHHHHHHHHHHHhCC-------------CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--
Q 015370          167 YAGAKWTEKAEELFERVKQSN-------------LSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY--  230 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~-------------~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--  230 (408)
                      ++..|++.+|+++++...+.+             +.-+.. .---|..++...|+-++|..+|...++.... |....  
T Consensus       185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av  263 (652)
T KOG2376|consen  185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAV  263 (652)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHH
Confidence            567788999999998873221             100111 1123444566789999999999888876542 33211  


Q ss_pred             --HHHHHHHHhc---------------------------------------------CCHHHHHHHHHHHhcCCCCCCCH
Q 015370          231 --NLWISSCAAT---------------------------------------------LNIDQVKKFLDEMSCDSGGSDDW  263 (408)
Q Consensus       231 --~~ll~~~~~~---------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~  263 (408)
                        |.|+..-...                                             +..+.+.++-.   ...+..|..
T Consensus       264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a---~lp~~~p~~  340 (652)
T KOG2376|consen  264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA---SLPGMSPES  340 (652)
T ss_pred             HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---hCCccCchH
Confidence              1111110000                                             01111111111   111222322


Q ss_pred             HHHHHHHHHHH--HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCC
Q 015370          264 VKYVNLVNIYI--TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK--------SLRMTKQKMT  333 (408)
Q Consensus       264 ~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~  333 (408)
                      . +.+++....  +...+.++.+ ++....+..+......--.++......|+++.|.+++.        .+.+.+..|-
T Consensus       341 ~-~~~ll~~~t~~~~~~~~ka~e-~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~  418 (652)
T KOG2376|consen  341 L-FPILLQEATKVREKKHKKAIE-LLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG  418 (652)
T ss_pred             H-HHHHHHHHHHHHHHHHhhhHH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence            2 222322222  2223555666 55555555444444555566777788899999998888        4555444443


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSAT-SDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                        +...++..+.+.++-+.|..++++.+..-. -.+.    ..++.-+...-.+.|+.++|..+++++.+
T Consensus       419 --~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k  486 (652)
T KOG2376|consen  419 --TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK  486 (652)
T ss_pred             --HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence              344455566666666666666655443100 0111    12233333333456777777777777766

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.64  E-value=2.5e-05  Score=76.72  Aligned_cols=219  Identities=15%  Similarity=0.112  Sum_probs=122.9

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCC-C---------
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLS-A---------  154 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~---------  154 (408)
                      .+...+..|+..+...+++++|.++.+...+.   .|+ ...|-.+...+...++.+++..+  .+... .         
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE  103 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence            35677889999999999999999999977775   344 33444444466777776665544  22111 1         


Q ss_pred             ----------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370          155 ----------KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV  224 (408)
Q Consensus       155 ----------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  224 (408)
                                .+...+..+..+|-+.|+.++|..+++++++.+ +-|+.+.|.+...|... ++++|.+++.+....   
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                      122455566666666677777777777776665 44666667777666666 677777666665543   


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370          225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF  304 (408)
Q Consensus       225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                                  +...+++.++.+++.++...  .+.+...+..+.+.....-                +...-+.++--
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~----------------~~~~~~~~~~~  228 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR----------------EFTRLVGLLED  228 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh----------------ccchhHHHHHH
Confidence                        33444555666666665552  2222222111111111110                11112223333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL  345 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  345 (408)
                      +-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus       229 l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        229 LYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            444555566666666666666655432 4444444555444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.64  E-value=0.00011  Score=67.89  Aligned_cols=258  Identities=12%  Similarity=0.077  Sum_probs=179.1

Q ss_pred             HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHH
Q 015370           97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEK  175 (408)
Q Consensus        97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~  175 (408)
                      -+-..+++...+++.+.+.+.  .+-...+.....-.+...|+-++|......-... ..+.++|..+.-.+-...++++
T Consensus        16 k~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e   93 (700)
T KOG1156|consen   16 KCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE   93 (700)
T ss_pred             HHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence            344678888899998888884  3445567666666778888999998887765544 4678889999888888899999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      |++.|......+ +-|...|.-+--.-++.++++.......+..+... -....|..+..++.-.|+...|..+++...+
T Consensus        94 aiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen   94 AIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988876 55777888777777888888888888777776422 2456677777888888999999999998887


Q ss_pred             CCCCCCCHHHHHHHHH------HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          256 DSGGSDDWVKYVNLVN------IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       256 ~~~~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      ...-.|+...|.....      ...+.|..++|.+ .+......... ....-..-...+.+.+++++|..+|..+... 
T Consensus       172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale-~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-  248 (700)
T KOG1156|consen  172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE-HLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER-  248 (700)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH-HHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence            5334566666554333      3455677777777 44443322211 1222223455567889999999999988876 


Q ss_pred             CCCChhhHHH-HHHHHHhcCCHHHHH-HHHHHHHh
Q 015370          330 QKMTSRNYIC-ILSSYLMLGHLKEVG-EIIDQWKQ  362 (408)
Q Consensus       330 ~~p~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~  362 (408)
                       .||..-|.. +..++.+-.+.-++. .+|....+
T Consensus       249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~  282 (700)
T KOG1156|consen  249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE  282 (700)
T ss_pred             -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence             566666554 444554333444444 66665544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=0.00011  Score=66.40  Aligned_cols=320  Identities=12%  Similarity=-0.030  Sum_probs=176.0

Q ss_pred             CCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHH
Q 015370           68 PKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        68 ~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      +-+.|...+.+-+.-. +++..-|..=..+|+..|++++|++=-.+-.+   +.|+ +..|+....++.-.|++++|+.-
T Consensus        17 d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   17 DFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             cHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            3345555555544332 33666677778888888888888765555554   4455 67888888888888999999888


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCC------------------------------------------------HHHHH
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKW------------------------------------------------TEKAE  177 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~------------------------------------------------~~~A~  177 (408)
                      |.+-....| |...++-|..++.....                                                .+...
T Consensus        93 y~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m  172 (539)
T KOG0548|consen   93 YSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM  172 (539)
T ss_pred             HHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence            887666543 45566666655511100                                                00000


Q ss_pred             HHHHHHHhC--------C-------CCC----------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          178 ELFERVKQS--------N-------LSF----------------------NALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       178 ~~~~~m~~~--------~-------~~p----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      +..-.+...        |       ..|                      -..-...+.++..+..+++.|.+-+.....
T Consensus       173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e  252 (539)
T KOG0548|consen  173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE  252 (539)
T ss_pred             HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            000000000        0       000                      011233455555556666666666666655


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH-------HHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN-------LVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      ..  -+..-++..-.+|...|.+.++...-+...+. |- ....-|+.       +..+|.+.++++.++. .+.+....
T Consensus       253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~-~~~kaLte  327 (539)
T KOG0548|consen  253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GR-ELRADYKLIAKALARLGNAYTKREDYEGAIK-YYQKALTE  327 (539)
T ss_pred             Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH-HHHHHhhh
Confidence            43  23333444444566666666555555444442 11 11111222       2335555666666666 55554444


Q ss_pred             cccCccchHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 015370          294 ITQRQWITYD-------------------------FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG  348 (408)
Q Consensus       294 ~~~~~~~~~~-------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  348 (408)
                      ...|+..+-.                         .-...+.+.|++..|+..|.++....+. |...|..-.-+|.+.|
T Consensus       328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLG  406 (539)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHh
Confidence            3333321110                         1133355667777777777777666422 5566777777777777


Q ss_pred             CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          349 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       349 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+..|+.=.+..++..  ++....|..=..++....+++.|.+.|++.++.
T Consensus       407 ~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  407 EYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             hHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777666666543  344555555555566666777777777776663

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1e-05  Score=73.49  Aligned_cols=254  Identities=9%  Similarity=-0.044  Sum_probs=184.0

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCC
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKW  172 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~  172 (408)
                      ....+.+.|+..+|.-+|+...+..  +-+...|..|.......++=..|+..+.+..+. +.|....-+|.-.|...|.
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            3445678899999999999998875  556789999999999999988888888876665 4578999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHH---------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMM---------TLYMSVGQVEKVALVVEEIK-RKNVVPDIFTYNLWISSCAATLN  242 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li---------~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~  242 (408)
                      -.+|++.++.-+....+   ..|...-         ..+.....+....++|-++. ..+.++|......|.-.|.-.|+
T Consensus       369 q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             HHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            99999999998654311   0000000         11222233455666666655 44544677777778778888999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW  322 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  322 (408)
                      +++|...|+.....  -|-|...||-|...++...+.++|+. .+.+..+-.+. -+.++..|.-.|...|.+++|...|
T Consensus       446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIs-AY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAIS-AYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHH-HHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence            99999999999883  45677889999999999999999999 89988776544 3556667888899999999999887


Q ss_pred             HHH---HhccCC------CChhhHHHHHHHHHhcCCHHHHHHH
Q 015370          323 KSL---RMTKQK------MTSRNYICILSSYLMLGHLKEVGEI  356 (408)
Q Consensus       323 ~~m---~~~~~~------p~~~~~~~li~~~~~~g~~~~A~~~  356 (408)
                      =..   .+.+..      ++...|..|=.++.-.++.|.+.+.
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            643   333221      1223455554555555555544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.58  E-value=2e-05  Score=64.69  Aligned_cols=153  Identities=10%  Similarity=-0.042  Sum_probs=115.0

Q ss_pred             HHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 015370          128 ATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG  206 (408)
Q Consensus       128 ~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  206 (408)
                      ..+-..+...|+-+....+....... +.|....+.++....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            44556666677777777666664433 4567777778888888888888888888888775 778888888888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          207 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       207 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      ++++|..-|.+..+.-.. +...++.+.-.+.-.|+++.|..++......  -.-+..+-..+.......|++++|..
T Consensus       149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence            888888888888775332 4566777777777888888888888887763  23466667778888888888888887

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.56  E-value=0.00059  Score=61.93  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHH
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQI  321 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~  321 (408)
                      .+...++++++.......|+. +|..+++.-.+..-++.|+. +|.+..+....+ ++..++++|.-|| .++..-|.++
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~-iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI  423 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK-IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI  423 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH-HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence            445555566655543334433 47777777778888888888 888888776666 6777777877665 4677888888


Q ss_pred             HHHHHhccCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          322 WKSLRMTKQKMTSRNY-ICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       322 ~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      |+.=.+.  -+|...| ...++-+.+.++-..|..+|++...++ ..|+  ...|..++.--..-|+...+.++-+++..
T Consensus       424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            8853332  3344444 357777888899999999999988873 4443  46899999888888999888888877654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.54  E-value=3.1e-05  Score=63.69  Aligned_cols=155  Identities=12%  Similarity=0.027  Sum_probs=66.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370          198 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS  277 (408)
Q Consensus       198 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  277 (408)
                      +-..+...|+-+....+......... -|.......+....+.|++..|...+++...  .-++|+..|+.+.-+|.+.|
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence            33334444444444444433332211 1223333344444444555555554444444  33444444555555555555


Q ss_pred             chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII  357 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  357 (408)
                      +++.|.. -+.+..+-.+. +....|.|.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus       149 r~~~Ar~-ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARR-AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHH-HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            5555444 34333332222 3334444444444445555555544444333211 2333333444444455555555544


Q ss_pred             H
Q 015370          358 D  358 (408)
Q Consensus       358 ~  358 (408)
                      .
T Consensus       226 ~  226 (257)
T COG5010         226 V  226 (257)
T ss_pred             c
Confidence            4

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=7.5e-05  Score=61.53  Aligned_cols=117  Identities=11%  Similarity=0.023  Sum_probs=52.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA----AT  240 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~  240 (408)
                      ..|++.|++++|++......      +......=+..+.+..+++-|.+.++.|.+-   -+..|.+-|..++.    ..
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence            34455555555555544411      1222222233334444555555555555542   13333333333322    23


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      +++..|.-+|++|.+  ..+|++.+.+-...++...|++++|.. +++....+
T Consensus       187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~-lL~eaL~k  236 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAES-LLEEALDK  236 (299)
T ss_pred             hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHH-HHHHHHhc
Confidence            344555555555554  234555555555555555555555555 44444444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.53  E-value=0.00012  Score=65.44  Aligned_cols=206  Identities=13%  Similarity=0.054  Sum_probs=147.7

Q ss_pred             hHHHHHHHhcCCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          140 IHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV  215 (408)
Q Consensus       140 ~~~a~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  215 (408)
                      +.++...-+.++..    +|+...+...+.+......-..+-..+.+-.+.+   ....+--..-.+...|++++|++.+
T Consensus       253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l  329 (484)
T COG4783         253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLL  329 (484)
T ss_pred             HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHH
Confidence            34444455555543    3567777777776665554444444444444322   2233333334455789999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370          216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  295 (408)
                      +.+...- +-|..........+.+.++..+|.+.++.+...  .+......-.+..+|.+.|++.+|.. ++.+.....+
T Consensus       330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~-~L~~~~~~~p  405 (484)
T COG4783         330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR-ILNRYLFNDP  405 (484)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCC
Confidence            9988762 235556666678899999999999999999984  33446777889999999999999999 8887766654


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC  373 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  373 (408)
                      . |...|..|..+|...|+..++..-..                  .+|...|+++.|...+....+..  +++..+|
T Consensus       406 ~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~--~~~~~~~  462 (484)
T COG4783         406 E-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV--KLGFPDW  462 (484)
T ss_pred             C-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc--cCCcHHH
Confidence            4 88999999999999999988877654                  34566799999999999888754  4455554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.51  E-value=3.2e-05  Score=63.33  Aligned_cols=125  Identities=10%  Similarity=0.036  Sum_probs=79.9

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH-HhcCC--HH
Q 015370          240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY-AGLGN--KD  316 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~  316 (408)
                      .++.+++...++...+  .-+.+...|..+...|...|++++|.. .+.......+. +...+..+..++ ...|+  .+
T Consensus        52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~-a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALL-AYRQALQLRGE-NAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence            4555666666666555  235666677777777777777777777 66666555433 555666666543 45555  47


Q ss_pred             HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH
Q 015370          317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS  371 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  371 (408)
                      +|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+..  +|+..
T Consensus       128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~  179 (198)
T PRK10370        128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVN  179 (198)
T ss_pred             HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence            777777777666433 45566666777777777777777777777654  34443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.51  E-value=4.7e-06  Score=64.54  Aligned_cols=94  Identities=10%  Similarity=-0.041  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHc
Q 015370           91 LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAG  169 (408)
Q Consensus        91 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~  169 (408)
                      +......+...|++++|.+.|+......  +.+...|..+..++.+.|++++|...|+...... .+...+..+..++.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            3344455555555666665555555542  3344555555555555555555555555544442 245555555555555


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 015370          170 AKWTEKAEELFERVKQS  186 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~  186 (408)
                      .|+.++|...|+.....
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            55555555555555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.51  E-value=2.6e-05  Score=75.69  Aligned_cols=183  Identities=9%  Similarity=0.027  Sum_probs=124.7

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYT  161 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~  161 (408)
                      .+.++..+..|.....+.|++++|..+++...+.   .|+ ......+...+.+.+++++|+..+++.....| +.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence            4556777888888888888888888888888874   455 45666677888888888888888888777654 466777


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                      .+..++.+.|++++|..+|+++...+ +-+..++..+..++-+.|+.++|...|+...+. ..|....|+..+.      
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------  230 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------  230 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------
Confidence            77788888888888888888888743 334678888888888888888888888887764 2344555554443      


Q ss_pred             CHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcC
Q 015370          242 NIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYITAS  277 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~  277 (408)
                      ++..-..+++.+.-.   .|.+....+...+|..|.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (694)
T PRK15179        231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR  269 (694)
T ss_pred             HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence            333444455555432   123333344445555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=5.7e-05  Score=61.89  Aligned_cols=119  Identities=8%  Similarity=0.027  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 015370          170 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AATLN--IDQV  246 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~--~~~a  246 (408)
                      .++.+++...++.....+ +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            334444444444444433 334445555555555555555555555544443221 333344443332 33333  2445


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      .+++++..+.  .+.+...+..+...+.+.|++++|.. .++++.+.
T Consensus       130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIE-LWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence            5555444442  22333444444444444444444444 44444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=0.00017  Score=60.50  Aligned_cols=230  Identities=16%  Similarity=0.111  Sum_probs=155.0

Q ss_pred             CCChhhHHH-HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHH--HHHhhcChHHHHHHHhcCCCCCCCHHHHH
Q 015370           85 QATVSELRH-ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRID--LMTKVFGIHSGERYFEGLPLSAKTSETYT  161 (408)
Q Consensus        85 ~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  161 (408)
                      .|...-|.. -...+-+.+.+..|+.+...|...    |....-..-+.  ..-..+++..+..+.++++.. .+..+.+
T Consensus        74 ~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~i  148 (459)
T KOG4340|consen   74 HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQI  148 (459)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-Cccchhc
Confidence            344443322 344566778899999998888653    22222222222  224567888899999998852 4555666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-------------DI  227 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------------~~  227 (408)
                      ...-...+.|+++.|.+-|+...+- |..| ...||..+..| +.|+++.|++...+++++|++-             |.
T Consensus       149 n~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv  226 (459)
T KOG4340|consen  149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV  226 (459)
T ss_pred             cchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence            6666678999999999999997764 5544 67888776655 6789999999999998887541             21


Q ss_pred             H--------HHHHHHH-------HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          228 F--------TYNLWIS-------SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       228 ~--------~~~~ll~-------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      .        .-+.++.       .+.+.|+++.|.+-+-+|.-+.....|+.|...+.-.-... ++-+..+ -+.-+..
T Consensus       227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~-~p~~g~~-KLqFLL~  304 (459)
T KOG4340|consen  227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDA-RPTEGFE-KLQFLLQ  304 (459)
T ss_pred             hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccC-CccccHH-HHHHHHh
Confidence            1        1223333       45678999999999999987766677888776655544433 2333333 2333444


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      ..+ -...||..++-.||++.-++.|-.++.+
T Consensus       305 ~nP-fP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  305 QNP-FPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             cCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            433 3457898999999999999999888764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.48  E-value=0.00037  Score=71.78  Aligned_cols=270  Identities=10%  Similarity=-0.018  Sum_probs=165.3

Q ss_pred             HHHHHHHhhcChHHHHHHHhcCCCC----C----CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhh
Q 015370          129 TRIDLMTKVFGIHSGERYFEGLPLS----A----KT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALM  194 (408)
Q Consensus       129 ~li~~~~~~g~~~~a~~~~~~~~~~----~----~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~  194 (408)
                      .....+...|++++|..++......    +    +.  ......+...+...|++++|...+++....--..+    ..+
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3444556778888888877654221    1    11  12223334556678999999999988776311112    134


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCC--C-CH
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVV-PDIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGS--D-DW  263 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~--~-~~  263 (408)
                      .+.+...+...|++++|...+++....    |.. +-..++..+...+...|++++|...+++....   .+..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            566667778899999999998887642    111 11234455566778899999999988775441   1211  1 22


Q ss_pred             HHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc--C--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhH-
Q 015370          264 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQ--R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNY-  337 (408)
Q Consensus       264 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~-  337 (408)
                      ..+..+...+...|++++|.. .+.+.......  +  ....+..+...+...|+.++|.+.+........... ...+ 
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQ-CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHH-HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            334556667778899999988 66665442111  1  233444566677789999999998887754321111 1111 


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          338 ----ICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       338 ----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                          ...+..+...|+.+.|..++..........+.  ...+..+..++...|++++|...+++....
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                11224445678999999998775432111110  112345677888899999999999987653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=7.6e-05  Score=70.71  Aligned_cols=213  Identities=15%  Similarity=0.092  Sum_probs=126.1

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCC--------CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEF--------VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS  157 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  157 (408)
                      .+...|..+.+.|.+.++.+-|.-.+..|....+.        .|+ .+=....-.....|.+++|+.+|.+-+.     
T Consensus       755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----  828 (1416)
T KOG3617|consen  755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----  828 (1416)
T ss_pred             hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence            35566777888888877777776666666432211        122 2222233334567778888888776653     


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhCC-----
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI----------KRKN-----  222 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----------~~~g-----  222 (408)
                        |..|=..|...|.|++|+++-+.--...+   ..||..-...+-..++.+.|++.|++.          ....     
T Consensus       829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e  903 (1416)
T KOG3617|consen  829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE  903 (1416)
T ss_pred             --HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence              44455666777888888877654333222   245555555666667777777766542          1111     


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc
Q 015370          223 ----VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ  298 (408)
Q Consensus       223 ----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  298 (408)
                          -..|...|.-....+-..|+.+.|+.++...++          |-++++..|-.|+.++|-+ +.++      ..|
T Consensus       904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~-iA~e------sgd  966 (1416)
T KOG3617|consen  904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAAR-IAEE------SGD  966 (1416)
T ss_pred             HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHH-HHHh------ccc
Confidence                122555666666666778888888888877665          2345555556666666666 3332      123


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          299 WITYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      ......|...|...|++.+|..+|.+.+
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            3444466666666666666666665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.48  E-value=6.7e-05  Score=73.81  Aligned_cols=230  Identities=12%  Similarity=0.026  Sum_probs=149.5

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370          124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY  202 (408)
Q Consensus       124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  202 (408)
                      ...+..|+..+...+++++|.++.+......|+ ...|-.+...+.+.++.+++..+                 .++...
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~   93 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF   93 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence            456777777777778888887777765554444 33333333355555664444443                 223333


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      ....++.-+..+...|...+.  +...+..+..+|-+.|+.+++..+++++.+- . +.++.+.|.+...|... +.++|
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHH
Confidence            334444444444445554322  4457788888999999999999999999984 3 77888899999999999 99999


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC-------------------CCChhhHHHHHHH
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-------------------KMTSRNYICILSS  343 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------------~p~~~~~~~li~~  343 (408)
                      .+ ++......               +...+++..+.++|.++....+                   .--..++..+...
T Consensus       169 ~~-m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        169 IT-YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             HH-HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            99 66655443               4445556666666665554321                   1223344556677


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          344 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      |-..++++++..+++.+.+..  +.|.....-++.+|.  +.+.. ...|++.
T Consensus       233 y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~--~kY~~-~~~~ee~  280 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK--EKYKD-HSLLEDY  280 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence            888899999999999998854  457777888888887  33333 3444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=0.00031  Score=63.02  Aligned_cols=190  Identities=8%  Similarity=-0.053  Sum_probs=138.2

Q ss_pred             CChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370          122 LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL  201 (408)
Q Consensus       122 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  201 (408)
                      |+...+...+.+......-..+..++.+..+. .-...+--..-.+...|+.++|+..++.+... .|-|+.-+......
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i  349 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR-GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDI  349 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCc-cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence            44455555555444333333333333222221 22223333334455679999999999998876 35677788888999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV  280 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  280 (408)
                      +.+.++.++|.+.++.+...  .|+ ....-.+..++.+.|++.+|+.+++....  ..+.++..|..|..+|...|+..
T Consensus       350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchH
Confidence            99999999999999999985  455 45556677899999999999999999887  46889999999999999999999


Q ss_pred             hhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH
Q 015370          281 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY  337 (408)
Q Consensus       281 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  337 (408)
                      ++..                   +....|...|+++.|...+...++.. +++..++
T Consensus       426 ~a~~-------------------A~AE~~~~~G~~~~A~~~l~~A~~~~-~~~~~~~  462 (484)
T COG4783         426 EALL-------------------ARAEGYALAGRLEQAIIFLMRASQQV-KLGFPDW  462 (484)
T ss_pred             HHHH-------------------HHHHHHHhCCCHHHHHHHHHHHHHhc-cCCcHHH
Confidence            9988                   34556788999999999998877653 4454443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.47  E-value=3.3e-07  Score=51.73  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      +||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6888899999999999999999999888888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.43  E-value=1.5e-05  Score=61.73  Aligned_cols=94  Identities=7%  Similarity=-0.129  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      +..+...+...|++++|...|+...... .+...|..+..++.+.|++++|...|++....+ +.+..++..+..++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence            4445566667777777777777655543 356666777777777777777777777776654 44666677777777777


Q ss_pred             CCHHHHHHHHHHHHhC
Q 015370          206 GQVEKVALVVEEIKRK  221 (408)
Q Consensus       206 g~~~~a~~~~~~m~~~  221 (408)
                      |++++|...|+.....
T Consensus       106 g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        106 GEPGLAREAFQTAIKM  121 (144)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            7777777777776653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.43  E-value=8.5e-05  Score=72.21  Aligned_cols=216  Identities=11%  Similarity=-0.001  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAE-ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      ....+.+=.+.+.-|+.++|- +++++..+            ++..........+++.-....... ...+...+..|..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~   94 (694)
T PRK15179         28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR   94 (694)
T ss_pred             cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence            444555556667777777763 34444432            233333333334444433333333 3346888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK  315 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  315 (408)
                      ...+.|.+++|..+++.+.+-  .+.+......+...+.+.+++++|+. ..+......+. +....+.+..++...|++
T Consensus        95 i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~-~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~  170 (694)
T PRK15179         95 ALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRA-EIELYFSGGSS-SAREILLEAKSWDEIGQS  170 (694)
T ss_pred             HHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHH-HHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence            999999999999999999883  45566778889999999999999999 88888777654 667778888899999999


Q ss_pred             HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015370          316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML  395 (408)
Q Consensus       316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  395 (408)
                      ++|.++|++....+. -+...+..+..++...|+.++|...|++..+..  .|...-|+..+.      +...-..++++
T Consensus       171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~------~~~~~~~~~~~  241 (694)
T PRK15179        171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLV------DLNADLAALRR  241 (694)
T ss_pred             HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHH------HHHHHHHHHHH
Confidence            999999999988432 247788899999999999999999999998854  566676665543      33334455555


Q ss_pred             HHh
Q 015370          396 LLQ  398 (408)
Q Consensus       396 m~~  398 (408)
                      +.-
T Consensus       242 ~~~  244 (694)
T PRK15179        242 LGV  244 (694)
T ss_pred             cCc
Confidence            543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00067  Score=66.05  Aligned_cols=84  Identities=15%  Similarity=0.182  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ..+|..+..+-.+.|.+.+|.+-|-+   .+   |+..|..+++...+.|.|++-.+++...+++.-.|...  +.+|-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyik---ad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK---AD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHh---cC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            34555555555555555555544422   11   34555555555555555555555555444444433322  234555


Q ss_pred             HHhcCCHHHHHH
Q 015370          237 CAATLNIDQVKK  248 (408)
Q Consensus       237 ~~~~g~~~~a~~  248 (408)
                      |++.++..+.++
T Consensus      1176 yAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1176 YAKTNRLTELEE 1187 (1666)
T ss_pred             HHHhchHHHHHH
Confidence            555555544433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.40  E-value=5.8e-07  Score=50.68  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD  226 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  226 (408)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.37  E-value=6.5e-07  Score=50.12  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370          371 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP  403 (408)
Q Consensus       371 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  403 (408)
                      .+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            478888888888888888888888888888877

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.36  E-value=8e-07  Score=49.73  Aligned_cols=32  Identities=22%  Similarity=0.470  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                      +|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.34  E-value=1.6e-05  Score=61.04  Aligned_cols=88  Identities=11%  Similarity=0.025  Sum_probs=34.2

Q ss_pred             HHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 015370          132 DLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       132 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  210 (408)
                      ..+...|++++|.+.|+.+... +.+...|..+...+.+.|++++|..+++.....+ +.+...+..+...+...|++++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~  103 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES  103 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence            3333344444444444333222 1233333444444444444444444444433332 2233333333444444444444


Q ss_pred             HHHHHHHHHh
Q 015370          211 VALVVEEIKR  220 (408)
Q Consensus       211 a~~~~~~m~~  220 (408)
                      |...|+...+
T Consensus       104 A~~~~~~al~  113 (135)
T TIGR02552       104 ALKALDLAIE  113 (135)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.31  E-value=0.00086  Score=63.43  Aligned_cols=129  Identities=15%  Similarity=0.028  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370          230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY  309 (408)
Q Consensus       230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  309 (408)
                      |......+.+.+..++|...+.+..+  ..+.....|......+...|..++|.+ .|.....-.+. ++....++...+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~-hv~s~~Ala~~l  728 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPD-HVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCC-CcHHHHHHHHHH
Confidence            44555677888899999988888887  456777888888899999999999999 77666554433 677888999999


Q ss_pred             HhcCCHHHHHH--HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          310 AGLGNKDKIDQ--IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       310 ~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      .+.|+..-|..  ++..+.+.+.. +...|-.+...+-+.|+.+.|-+.|+.....
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            99999888888  99998887643 7889999999999999999999999987654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=4.4e-05  Score=68.70  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 015370          128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ  207 (408)
Q Consensus       128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  207 (408)
                      ..++..+...++++.|..+|+++....|+  ....+++.+...++-.+|.+++++..... +-|...+..-...+.+.++
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~  249 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK  249 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            34555556667777777777777765554  33346666666777777777777766543 3455566666666777777


Q ss_pred             HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          208 VEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       208 ~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ++.|+++.+++...  .|+. .+|..|..+|.+.|+++.|+..++.+..
T Consensus       250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            77777777777764  3443 4777777777777777777777766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.24  E-value=2.4e-05  Score=55.52  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVG--------QVEKVALVVEEIKRKNVVPDIFT  229 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~  229 (408)
                      +-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-+.+.+|+.|...+++|+..|
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            334556666666888888889999998888 888889998888887653        34567778888888888888888


Q ss_pred             HHHHHHHHHh
Q 015370          230 YNLWISSCAA  239 (408)
Q Consensus       230 ~~~ll~~~~~  239 (408)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            8888887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.23  E-value=3.9e-05  Score=58.84  Aligned_cols=99  Identities=10%  Similarity=-0.055  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL  341 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  341 (408)
                      +......+...+.+.|++++|.+ .+.......+ .+...|..+...+...|++++|...++...+.+ ..+...+..+.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la   92 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALK-LFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA   92 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence            34445566666777777777777 6666555432 255666666777777777777777777665543 22445555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhh
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ..+...|++++|...|++..+.
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            6677777777777777776664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0008  Score=57.92  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=35.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCC
Q 015370          339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA-----FSDVGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      .|+-.|.+.+++.+|..+.+++.   ...|-......++.+     .......+-|.+.|+-.-+.+..-|
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD  357 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD  357 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence            45666889999999999988743   223333322222211     1122345566666666555555444

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.16  E-value=3.8e-05  Score=69.44  Aligned_cols=121  Identities=17%  Similarity=0.112  Sum_probs=99.0

Q ss_pred             CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH
Q 015370          120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY  195 (408)
Q Consensus       120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~  195 (408)
                      .+.+......+++.+....+++.+..++-++...+    .-..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            35566777778888888888888888877776652    12445568999999999999999999998999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015370          196 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT  240 (408)
Q Consensus       196 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  240 (408)
                      |.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999888877777788888878777765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.15  E-value=0.0005  Score=64.64  Aligned_cols=136  Identities=10%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch
Q 015370          200 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL  279 (408)
Q Consensus       200 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  279 (408)
                      .+.....+|.+|+.+++.++.+...  .--|..+.+.|+..|+++.|.++|-+.-.          ++-.|.+|.+.|++
T Consensus       740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccH
Confidence            3444566777777777777765332  23466667778888888888888765322          34566788888888


Q ss_pred             hhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      ++|.+ +-.+  ..++......|-.-..-+-..|++.+|.++|-.+.    .|+     ..|.+|-+.|..++.+++..+
T Consensus       808 ~da~k-la~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  808 EDAFK-LAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHH-HHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence            88877 3322  23444444555555555566677777776664321    233     245566666666666666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.15  E-value=0.0018  Score=62.34  Aligned_cols=107  Identities=10%  Similarity=0.044  Sum_probs=54.8

Q ss_pred             hhcChHHHHHHHhcCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370          136 KVFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV  214 (408)
Q Consensus       136 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  214 (408)
                      ..+++..|.+-..++.+..||....-++ .-.+.+.|..++|..+++.....+.. |..|...+-..|...|+.++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence            4455555655555555444443221111 12234556666666555555544422 555666666666666666666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370          215 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       215 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  245 (408)
                      |++..+.  -|+..-...+..+|.+.+++.+
T Consensus       100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen  100 YERANQK--YPSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence            6665553  3444444455555555555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.003  Score=52.37  Aligned_cols=250  Identities=12%  Similarity=0.058  Sum_probs=158.2

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCH
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWT  173 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~  173 (408)
                      ++-+.-.|++..++..-+.....   +-+...-.-+-++|...|.+.....   +++.. .+.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchh
Confidence            34455567888777666555443   2233444445567777776654332   33332 13334444444444444444


Q ss_pred             HH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          174 EK-AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE  252 (408)
Q Consensus       174 ~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  252 (408)
                      ++ ..++.+.+......-+......-...|++.|++++|++......      +......=+..+.+..+++-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 33455556555444444444455667889999999999887621      223333335566778889999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHH----cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          253 MSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      |.+-    .+..+.+-|..++.+    .+.+.+|.- +|+++.++ .+|+..+.+....++...|++++|..++++...+
T Consensus       163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfy-ifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFY-IFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHcc----chHHHHHHHHHHHHHHhccchhhhhHHH-HHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9982    455666666666554    466888888 88887554 4568888888899999999999999999998877


Q ss_pred             cCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 015370          329 KQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWKQS  363 (408)
Q Consensus       329 ~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~  363 (408)
                      ..+ ++.+...+|.+-...|.. +-..+.+.+++..
T Consensus       237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            654 566666666655556654 4456666666654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.14  E-value=0.00014  Score=65.51  Aligned_cols=126  Identities=14%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +-..-..|+..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|.+++.+...... -|........+
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~  242 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAE  242 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            34556677888888899999999999999885  44  555688888888999999999999887533 35666666677


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE  289 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  289 (408)
                      .+.+.++++.|..+.+++.+.  .|.+..+|..|..+|.+.|+++.|+. .+..
T Consensus       243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs  293 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL-ALNS  293 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH-HHhc
Confidence            789999999999999999983  45667789999999999999999998 5554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.14  E-value=0.0094  Score=57.68  Aligned_cols=224  Identities=13%  Similarity=0.099  Sum_probs=142.9

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH--HHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL--MTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEK  175 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~  175 (408)
                      ...+++..|+.....+.+..   |+. .|...+.+  +.+.|+.++|..+++..... +.|..|...+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            34567888888888887753   332 22333333  36788888888888877655 3477888888888888888888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------CHHH
Q 015370          176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------NIDQ  245 (408)
Q Consensus       176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~  245 (408)
                      |..+|++.....  |+......+..+|.+.+++.+-.+.--+|-+. ..-+.+.|=.+++.....-          -..-
T Consensus        96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            888888888764  56677777778888888776655544444332 2223444444555443321          1234


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHH-HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL-VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      |...++.+.+..|-..+..-.......+...|++++|.. ++ ....+.....+...-+.-+..+...+++.+..++-.+
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~-~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE-FLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            566666666654422222223344455566788888888 55 4444444444445555667777788888888888888


Q ss_pred             HHhccC
Q 015370          325 LRMTKQ  330 (408)
Q Consensus       325 m~~~~~  330 (408)
                      +...|.
T Consensus       252 Ll~k~~  257 (932)
T KOG2053|consen  252 LLEKGN  257 (932)
T ss_pred             HHHhCC
Confidence            887764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.11  E-value=0.00016  Score=56.19  Aligned_cols=22  Identities=9%  Similarity=-0.011  Sum_probs=9.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhC
Q 015370          165 HLYAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~  186 (408)
                      ..+...|++++|...|+.....
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~   77 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALAN   77 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh
Confidence            3344444444444444444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0034  Score=51.70  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             CCCChhh-HHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHH
Q 015370           84 NQATVSE-LRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYT  161 (408)
Q Consensus        84 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~  161 (408)
                      ..++.++ |-.++-+....|+.+.|...++++..+  ++-+...-..-.-.+-..|++++|.++++.+....| |..++-
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K  124 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK  124 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence            4455544 455666667777888888888877765  322333322223344567778888888887776644 455665


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLWISSCA--  238 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~--  238 (408)
                      -=+...-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|--.++++.-.  .|... .+..+...+.  
T Consensus       125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~  201 (289)
T KOG3060|consen  125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQ  201 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHH
Confidence            5555555566666777777776665 4567788888888888888888888888877763  34333 3333333332  


Q ss_pred             -hcCCHHHHHHHHHHHhc
Q 015370          239 -ATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       239 -~~g~~~~a~~~~~~~~~  255 (408)
                       ...+.+.+.++|.+..+
T Consensus       202 gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  202 GGAENLELARKYYERALK  219 (289)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence             23356667777777766

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.08  E-value=5e-06  Score=45.26  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~  186 (408)
                      +|++++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.00072  Score=64.43  Aligned_cols=135  Identities=15%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             HHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-----------CCCHHHHHHHHHH
Q 015370           98 LRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-----------AKTSETYTALLHL  166 (408)
Q Consensus        98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~ll~~  166 (408)
                      |...|+.+.|.+-..-+++       ...|..+.+.|.+..+++-|.-.+-.|...           .++ ..=....-.
T Consensus       738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            4455666666665555443       356666777777777666666555555432           011 111122222


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV  246 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  246 (408)
                      ....|.+++|+.+|.+.+..+         .|=..|...|.|++|+++-+.=-+-.+   ..||......+-..++.+.|
T Consensus       810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence            345566677777776665532         233445566777777766543222212   13444444455555666666


Q ss_pred             HHHHHH
Q 015370          247 KKFLDE  252 (408)
Q Consensus       247 ~~~~~~  252 (408)
                      ++.|++
T Consensus       878 leyyEK  883 (1416)
T KOG3617|consen  878 LEYYEK  883 (1416)
T ss_pred             HHHHHh
Confidence            666665

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.07  E-value=5.2e-06  Score=45.19  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  401 (408)
                      +|++|+.+|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            567777777777777777777777776664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.07  E-value=5.8e-05  Score=68.25  Aligned_cols=121  Identities=12%  Similarity=0.125  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL  232 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  232 (408)
                      .+......+++.+....+++++..++.+....  ....-..|.+++++.|.+.|..++++.+++.=...|+-||.++++.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            46667777888888888999999999998875  2222345668999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 015370          233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA  276 (408)
Q Consensus       233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  276 (408)
                      +|+.+.+.|++..|.++...|..+ ....+..++...+.++.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence            999999999999999999998875 5666777776666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.07  E-value=7.3e-05  Score=60.04  Aligned_cols=97  Identities=15%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------------
Q 015370          145 RYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV--------------  205 (408)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------------  205 (408)
                      ..|+.......|..+|..+++.|.+.     |.++-....+..|.+-|+.-|..+|+.|++.+=+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            34444433346677777777777643     67888888888899999888999999988887542              


Q ss_pred             --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          206 --GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       206 --g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                        .+-+-|++++++|...|+.||..|+..+++.+.+.+
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence              123445555555555555555555555555554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.06  E-value=0.00025  Score=55.06  Aligned_cols=125  Identities=11%  Similarity=0.070  Sum_probs=91.4

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh---HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH----HHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD---SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS----ETYT  161 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~  161 (408)
                      ..|..++..+ ..++...+.+.++.+.+..  +.++   ...-.+...+...|++++|...|+.+....||.    ...-
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            3455566665 4788888888899988864  3332   233345577888999999999999888765543    3445


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      .|...+...|++++|+..++......  .....+......|.+.|++++|...|+..
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            56788888999999999997754443  34557778888899999999999888753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0045  Score=50.98  Aligned_cols=84  Identities=17%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370          240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      .|++++|+++++.+.++  .+.|..++---+...-..|+..+|++ -+....+.... |...|.-+...|...|++++|.
T Consensus        99 ~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~  174 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAA  174 (289)
T ss_pred             hhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHH
Confidence            44555555555555542  23344444444444444444444444 34444333322 4455555555555555555555


Q ss_pred             HHHHHHHh
Q 015370          320 QIWKSLRM  327 (408)
Q Consensus       320 ~~~~~m~~  327 (408)
                      -.++++.-
T Consensus       175 fClEE~ll  182 (289)
T KOG3060|consen  175 FCLEELLL  182 (289)
T ss_pred             HHHHHHHH
Confidence            55555444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.99  E-value=0.011  Score=56.14  Aligned_cols=137  Identities=15%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCH
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT  173 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  173 (408)
                      .+.+......|.+|+.+++.+..+.   .-..-|..+.+-|+..|+++.|.++|-+..       .++-.|.+|.+.|+|
T Consensus       738 aieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccH
Confidence            4445556678888888888887653   334557777788999999999999987654       466778899999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD  251 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  251 (408)
                      +.|.++-++....  ...+..|-+-..-.-+.|++.+|+++|-....    |+.     -|..|-+.|..+..+++.+
T Consensus       808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence            9999988766543  23455666666666677777777776643321    332     2344555555555554444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.98  E-value=0.00017  Score=53.75  Aligned_cols=97  Identities=9%  Similarity=-0.053  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVL-SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALL  164 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll  164 (408)
                      ++..+...+.+.|++++|.+.|..+.+..+-.+ ....+..+..++.+.|+++.|.+.|+.+....|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344455555556666666666666554320000 1223334445555555555555555544432221    23444444


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhC
Q 015370          165 HLYAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~  186 (408)
                      .++.+.|+.++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5555555555555555555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.98  E-value=0.013  Score=53.58  Aligned_cols=314  Identities=10%  Similarity=0.068  Sum_probs=182.8

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL  163 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l  163 (408)
                      .+-|..+|+.||+-+... ..+++.+.++++...  ++.++..|..-|..-.+..+++.++.+|.+-.....+...|...
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY   92 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY   92 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence            577999999999988766 999999999999975  56778899999999999999999999999877666788899888


Q ss_pred             HHHHHcC-CCHHH----HHHHHHH-HHhCCCCCC-hhhHHHHHHHH---------HhcCCHHHHHHHHHHHHhC------
Q 015370          164 LHLYAGA-KWTEK----AEELFER-VKQSNLSFN-ALMYNEMMTLY---------MSVGQVEKVALVVEEIKRK------  221 (408)
Q Consensus       164 l~~~~~~-~~~~~----A~~~~~~-m~~~~~~p~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~------  221 (408)
                      |+.--+. |+...    ..+.|+- +.+.|+.+- ...|+..+..+         ..+.+++...++|+++...      
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            8765443 22222    2223332 333443221 12233333221         1122333333344333221      


Q ss_pred             --------------------------------------------CCCCCHHH---------------HHHHHH-------
Q 015370          222 --------------------------------------------NVVPDIFT---------------YNLWIS-------  235 (408)
Q Consensus       222 --------------------------------------------g~~p~~~~---------------~~~ll~-------  235 (408)
                                                                  |...+..+               |-.+|.       
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL  252 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL  252 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence                                                        11000000               111110       


Q ss_pred             ---------------------HHH---------------------hcCC-------HHHHHHHHHHHhcCCCCCCCHHHH
Q 015370          236 ---------------------SCA---------------------ATLN-------IDQVKKFLDEMSCDSGGSDDWVKY  266 (408)
Q Consensus       236 ---------------------~~~---------------------~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~  266 (408)
                                           .+.                     ..|+       -+++..+++.... .-...+..+|
T Consensus       253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~~~~~~Ly  331 (656)
T KOG1914|consen  253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLLKENKLLY  331 (656)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                                 000                     0000       1112222222111 0001111111


Q ss_pred             HHHHHHHHH---cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHH
Q 015370          267 VNLVNIYIT---ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILS  342 (408)
Q Consensus       267 ~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~  342 (408)
                      ..+...--.   .+..+.... .+.+........-..+|..+|..-.+...+..|..+|.+..+.+..+ ....+++++.
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~-~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE  410 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHE-IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME  410 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHH-HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence            111111000   011222333 33333333333334577788888888899999999999999998877 6666777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      -+| .++.+-|.++|+--.++.  .-+...-..-+.-+...++-..|..+|++.+..++.||.
T Consensus       411 y~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k  470 (656)
T KOG1914|consen  411 YYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK  470 (656)
T ss_pred             HHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence            777 588999999999876653  223333455677778889889999999999888776653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.97  E-value=0.009  Score=51.48  Aligned_cols=309  Identities=12%  Similarity=0.014  Sum_probs=202.8

Q ss_pred             CCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHH-HHHHHHHHHhhcChHHHHHHHhcCCCCCCC----H
Q 015370           83 GNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSD-YATRIDLMTKVFGIHSGERYFEGLPLSAKT----S  157 (408)
Q Consensus        83 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~  157 (408)
                      |.+.+-.++..-...|...|+-..|+.=+.+..+   .+||-.. -..-...+.+.|.++.|..=|+.+....|+    .
T Consensus        67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~  143 (504)
T KOG0624|consen   67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL  143 (504)
T ss_pred             CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence            3344445555556677788888888888888887   4677433 223346778999999999999888776542    1


Q ss_pred             ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          158 ------------ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       158 ------------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                                  ......+..+...|+...|+.....+++.. +-|+..|..-..+|...|++..|..=++..-+..-. 
T Consensus       144 eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-  221 (504)
T KOG0624|consen  144 EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-  221 (504)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-
Confidence                        122334556677899999999999998864 557888888889999999999998877766554332 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH----HHHH---------HHHHHHcCchhhhHHHHHHHHHH
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK----YVNL---------VNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      +..++--+-..+...|+.+.++...++..+-   .||.-.    |-.|         +......+++.++.+ ..+...+
T Consensus       222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle-~ge~vlk  297 (504)
T KOG0624|consen  222 NTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLE-AGEKVLK  297 (504)
T ss_pred             chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHh
Confidence            4555555667778889999988888888762   344322    2111         112344556666666 5555555


Q ss_pred             hcccCccc---hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 015370          293 SITQRQWI---TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF  368 (408)
Q Consensus       293 ~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  368 (408)
                      ..+.....   .+..+-.++...+++.+|++.-.+....  .|+ ..++.--..+|.-...++.|+.=|+...+.+  +.
T Consensus       298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n--~s  373 (504)
T KOG0624|consen  298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN--ES  373 (504)
T ss_pred             cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cc
Confidence            54442333   3444556667788999999988887765  444 6677777778888888888888888776643  11


Q ss_pred             CHHH------------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 015370          369 DISA------------------CNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA  406 (408)
Q Consensus       369 ~~~~------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  406 (408)
                      |...                  |.. |-+-.++-.-.+....|++|.. .+.||..
T Consensus       374 n~~~reGle~Akrlkkqs~kRDYYK-ILGVkRnAsKqEI~KAYRKlAq-kWHPDNF  427 (504)
T KOG0624|consen  374 NTRAREGLERAKRLKKQSGKRDYYK-ILGVKRNASKQEITKAYRKLAQ-KWHPDNF  427 (504)
T ss_pred             cHHHHHHHHHHHHHHHHhccchHHH-HhhhcccccHHHHHHHHHHHHH-hcCCccc
Confidence            2221                  221 2233444445566667777654 3667653

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.95  E-value=0.00021  Score=50.82  Aligned_cols=82  Identities=10%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhcCCCCCCCHH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIFTYNLWISSCAATL--------NIDQVKKFLDEMSCDSGGSDDWV  264 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~  264 (408)
                      |-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-+.+.+++.|.. .+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence            334556667777999999999999999999 999999999999887643        24466788888887 48888888


Q ss_pred             HHHHHHHHHHHc
Q 015370          265 KYVNLVNIYITA  276 (408)
Q Consensus       265 ~~~~li~~~~~~  276 (408)
                      +|+.++..+.+.
T Consensus       106 tYnivl~~Llkg  117 (120)
T PF08579_consen  106 TYNIVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHHHHh
Confidence            888888877653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.013  Score=53.44  Aligned_cols=294  Identities=9%  Similarity=-0.019  Sum_probs=201.2

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCH
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWT  173 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~  173 (408)
                      -++.+..|+++.|+.+|-......  +++...|+.-..+|+..|++++|++=-.+-....|+ ...|+-...++.-.|++
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence            456778899999999999998875  668889999999999999999998765555554566 67899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------------------------------------------
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-----------------------------------------------  206 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------------------------------------------  206 (408)
                      ++|+..|.+=++.. +-+...++-+..++.-..                                               
T Consensus        87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence            99999999988875 445666666666652110                                               


Q ss_pred             -C---HHHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHH
Q 015370          207 -Q---VEKVALVVEE-----IKRKN-------VVP------------D----------IFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       207 -~---~~~a~~~~~~-----m~~~g-------~~p------------~----------~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                       +   +..+...+..     +...|       ..|            |          ..-...+.++..+..+++.+.+
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence             0   0001000000     00000       111            1          1123455566666777888888


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH-------HHHHHHHhcCCHHHHHHH
Q 015370          249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD-------FLIILYAGLGNKDKIDQI  321 (408)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~  321 (408)
                      .+....+- .  -+..-++....+|...|.+.++.. .-....+.+.. ...-|+       .+..+|.+.++++.+...
T Consensus       246 ~y~~a~el-~--~~it~~~n~aA~~~e~~~~~~c~~-~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  246 HYAKALEL-A--TDITYLNNIAAVYLERGKYAECIE-LCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHhH-h--hhhHHHHHHHHHHHhccHHHHhhc-chHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            88777763 2  344446677778888888887777 44444443322 112222       234466677889999999


Q ss_pred             HHHHHhccCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370          322 WKSLRMTKQKMTSRNY-------------------------ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL  376 (408)
Q Consensus       322 ~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  376 (408)
                      |.+.......|+..+=                         -.-...+.+.|++..|...+.++++..  +-|...|..-
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNR  398 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNR  398 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHH
Confidence            9887666555553320                         111344778899999999999999875  5688999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 015370          377 LGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       377 i~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ..+|.+.|.+..|+.=.+..++
T Consensus       399 Aac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  399 AACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999999886666665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.89  E-value=0.00031  Score=49.46  Aligned_cols=94  Identities=15%  Similarity=0.075  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      +..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++........ +..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence            3344455555566666666666555442 223345555555555556666666666555544321 23344555555555


Q ss_pred             cCCHHHHHHHHHHHhc
Q 015370          240 TLNIDQVKKFLDEMSC  255 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~  255 (408)
                      .|+++.|...+....+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            5556655555555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.88  E-value=0.00027  Score=61.47  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=89.7

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH-HHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL-MTKVFGIHSGERYFEGLPLS-AKTSETYTALLHL  166 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~  166 (408)
                      .+|..+++...+.+..+.|..+|.+..+.+  ..+...|...... +...++.+.|.++|+...+. +.+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            357778888888888888888888887654  2233334333333 22345666688888876655 5677888888888


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      +.+.++.+.|..+|++.... ++++.   ..|...+..=.+.|+++.+.++.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888888766 33333   47888888888888888888888877764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.88  E-value=0.00033  Score=49.29  Aligned_cols=94  Identities=21%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  381 (408)
                      +..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+..  +.+...+..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence            44566667777888888888887765532 233556667777777888888888888877643  334456777778888


Q ss_pred             hcCChHHHHHHHHHHHh
Q 015370          382 DVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       382 ~~g~~~~a~~~~~~m~~  398 (408)
                      ..|+++.|...+++..+
T Consensus        80 ~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          80 KLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHhHHHHHHHHHHHHc
Confidence            88888888888877765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.87  E-value=5.5e-05  Score=52.51  Aligned_cols=81  Identities=15%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             cCCHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370          312 LGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       312 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      .|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..++++ .+.+  ..+....-.+..+|.+.|++++|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            46777777777777766542 2333444467777777788888777776 3222  123334445567777778888877


Q ss_pred             HHHHH
Q 015370          391 EFHML  395 (408)
Q Consensus       391 ~~~~~  395 (408)
                      +++++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.84  E-value=0.00082  Score=50.00  Aligned_cols=95  Identities=13%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 015370          304 FLIILYAGLGNKDKIDQIWKSLRMTKQK-M-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAF  380 (408)
Q Consensus       304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~  380 (408)
                      .+...+.+.|++++|.+.|..+...... + ....+..+...+.+.|++++|...|+.+.......+ ....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3344444455555555555544433211 0 012233344445555555555555555443221111 123344444445


Q ss_pred             HhcCChHHHHHHHHHHHh
Q 015370          381 SDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       381 ~~~g~~~~a~~~~~~m~~  398 (408)
                      .+.|++++|...++++.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHhCChHHHHHHHHHHHH
Confidence            555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.80  E-value=4.6e-05  Score=52.93  Aligned_cols=82  Identities=11%  Similarity=0.029  Sum_probs=52.4

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELF  180 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~  180 (408)
                      .|+++.|+.+++++.+..+..++...+-.+..++.+.|++++|..+++.....+.+....-.+..++.+.|++++|+++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            46788888888888876411123344444677788888888888888772211233455555577788888888888877


Q ss_pred             HH
Q 015370          181 ER  182 (408)
Q Consensus       181 ~~  182 (408)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.75  E-value=0.001  Score=57.94  Aligned_cols=128  Identities=14%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL-YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM  203 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  203 (408)
                      +|..++...-+.+..+.|..+|.+....+ .+..+|-..... |...++.+.|.++|+...+. ++.+...|..-++.+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            34444455555555555555555444332 122222222222 11123334455555554433 2334444444455555


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          204 SVGQVEKVALVVEEIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       204 ~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      +.|+.+.|..+|++.... +.++.   ..|...++-=.+.|+.+.+..+.+++.+
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555555554433 21111   2444444444444455544444444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.74  E-value=0.0023  Score=62.46  Aligned_cols=184  Identities=13%  Similarity=-0.037  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          206 GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       206 g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      .+...|+..|-+..+.  .|+ ...|..|...|+..-+...|...|+..-+  -...+......+...|+...+++.|..
T Consensus       472 K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~  547 (1238)
T KOG1127|consen  472 KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFE  547 (1238)
T ss_pred             hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHH
Confidence            3466666666555553  233 46788888888888888899999998876  234566778889999999999999998


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          285 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      +.+....+.....-...|-...-.|...++...+..-|+...+..++ |...|..+..+|...|++..|.++|.+...  
T Consensus       548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--  624 (1238)
T KOG1127|consen  548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL--  624 (1238)
T ss_pred             HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence            33332222222222334444555567788888888888876655432 666788899999999999999999988765  


Q ss_pred             CCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 015370          365 TSDFDISACNR--LLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       365 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                       ..|+.. |..  ..-..+-.|++++|+..+...+.
T Consensus       625 -LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  625 -LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             -cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             344432 222  22234567888888888877654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.67  E-value=0.0011  Score=58.29  Aligned_cols=286  Identities=14%  Similarity=0.050  Sum_probs=153.3

Q ss_pred             HHHHhcccHHHHHHHHHHHHhccCCCCC----hHHHHHHHHHHHhhcChHHHHHHHhc-------CCCCCCCHHHHHHHH
Q 015370           96 KELRKSQRYKHALEISEWMVTHKEFVLS----DSDYATRIDLMTKVFGIHSGERYFEG-------LPLSAKTSETYTALL  164 (408)
Q Consensus        96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~ll  164 (408)
                      .-+++.|+....+.+|+...+.|  .-|    ..+|..|.++|.-.+++++|+++...       |-...-...+...|.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            45789999999999999999987  444    34677888888889999999987542       111111233444455


Q ss_pred             HHHHcCCCHHHHHHHHHHH----HhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          165 HLYAGAKWTEKAEELFERV----KQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m----~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      +.+-..|.+++|.-.-.+-    .+.|- .....++-.+...|...|+.-....    -.+.|-.|+.++-         
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~~---------  169 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVTS---------  169 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHHH---------
Confidence            5556667777765543322    12220 0123455556666665554211000    0011222222110         


Q ss_pred             cCCHHHHHHHHHHH---hcCCCC-CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH----Hhccc-CccchHHHHHHHHH
Q 015370          240 TLNIDQVKKFLDEM---SCDSGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAE----KSITQ-RQWITYDFLIILYA  310 (408)
Q Consensus       240 ~g~~~~a~~~~~~~---~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~~li~~~~  310 (408)
                        .++.|.++|.+-   ....|. -.-...|..|.+.|.-.|+++.|+. .-+.-.    +-+.. .....+..|..++.
T Consensus       170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~-~H~~RL~ia~efGDrAaeRRA~sNlgN~hi  246 (639)
T KOG1130|consen  170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH-FHKLRLEIAQEFGDRAAERRAHSNLGNCHI  246 (639)
T ss_pred             --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH-HHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence              122222222211   000010 0112345566666666777777765 211110    11111 12345666777777


Q ss_pred             hcCCHHHHHHHHHHHHhc----cC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHH
Q 015370          311 GLGNKDKIDQIWKSLRMT----KQ-KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFS  381 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~  381 (408)
                      -.|+++.|.+.|+.-...    |- .....+.-+|...|.-..++++|+.++.+-..    .+...-....|-+|..+|.
T Consensus       247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            778888887777653322    21 22333455677777777778888887765322    1111224556667888888


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 015370          382 DVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       382 ~~g~~~~a~~~~~~m~~~  399 (408)
                      ..|..++|+.+.+.-++.
T Consensus       327 alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  327 ALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            888888888776665543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.66  E-value=0.0036  Score=48.13  Aligned_cols=95  Identities=8%  Similarity=-0.088  Sum_probs=56.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      .-.+..-+...|++++|.++|+-+...+ +-+..-|-.|..++-..|++++|...|.......+ -|...+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            3344444555666666666666665554 23445555666666666666666666666665543 245555556666666


Q ss_pred             cCCHHHHHHHHHHHhcC
Q 015370          240 TLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~  256 (408)
                      .|+.+.|.+.|+.....
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            66666666666665553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00034  Score=58.91  Aligned_cols=86  Identities=19%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHH
Q 015370          273 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLK  351 (408)
Q Consensus       273 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~  351 (408)
                      +.+.+++.+|+. .+.+..+-.+. |.+.|..=..+|.+.|.++.|++-.+.....  .| -..+|..|..+|...|+++
T Consensus        91 ~m~~~~Y~eAv~-kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   91 LMKNKDYQEAVD-KYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHhhhHHHHHH-HHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence            445555666666 55555444333 5555555556666666666665555444332  22 2334555666666666666


Q ss_pred             HHHHHHHHHHh
Q 015370          352 EVGEIIDQWKQ  362 (408)
Q Consensus       352 ~A~~~~~~~~~  362 (408)
                      +|.+.|++..+
T Consensus       167 ~A~~aykKaLe  177 (304)
T KOG0553|consen  167 EAIEAYKKALE  177 (304)
T ss_pred             HHHHHHHhhhc
Confidence            66666655554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.63  E-value=0.0011  Score=59.91  Aligned_cols=90  Identities=11%  Similarity=-0.018  Sum_probs=53.3

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCH
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWT  173 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~  173 (408)
                      ...+...|++++|++.|++..+..  +-+...|..+..++.+.|++++|+..+++.....| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence            444555666666666666666643  33445555555666666666666666665554433 455566666666666666


Q ss_pred             HHHHHHHHHHHhC
Q 015370          174 EKAEELFERVKQS  186 (408)
Q Consensus       174 ~~A~~~~~~m~~~  186 (408)
                      ++|...|++.+..
T Consensus        87 ~eA~~~~~~al~l   99 (356)
T PLN03088         87 QTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.62  E-value=0.0042  Score=49.79  Aligned_cols=85  Identities=14%  Similarity=-0.033  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      ...+..+...+...|++++|...|++....+..+.  ...+..+...+.+.|++++|...+++....... +...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence            44555555555666666666666665554321111  245555566666666666666666665553211 233444444


Q ss_pred             HHHHhcCC
Q 015370          235 SSCAATLN  242 (408)
Q Consensus       235 ~~~~~~g~  242 (408)
                      ..+...|+
T Consensus       114 ~~~~~~g~  121 (172)
T PRK02603        114 VIYHKRGE  121 (172)
T ss_pred             HHHHHcCC
Confidence            44544444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.60  E-value=0.0082  Score=58.79  Aligned_cols=182  Identities=12%  Similarity=-0.034  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370          104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFER  182 (408)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~  182 (408)
                      ...++..|-+.....  ..-...|..|...|+...+...|.+.|+...+. ..+...+..+.+.|+...+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            555666655555432  222467888999998888889999999887765 35688888999999999999999988433


Q ss_pred             HHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 015370          183 VKQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD  261 (408)
Q Consensus       183 m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  261 (408)
                      .-+... ..-...|....-.|.+.++..+|..-|+...+..++ |...|..+..+|...|++..|.++|.+...-  -|.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence            333210 001123334445566778888888888887775443 6778888888888888888888888777652  122


Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAE  291 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  291 (408)
                      +...---....-+..|.+++|+. .+..+.
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald-~l~~ii  657 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALD-ALGLII  657 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence            33322233344566777777777 555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.60  E-value=0.0037  Score=59.06  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      ..|.++.-.....|++++|...+++....   .|+...|..+...+...|+.++|.+ .+.+....
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~L  482 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAAD-AYSTAFNL  482 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhc
Confidence            34444433333445555555555555442   2344445555555555555555555 44444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.57  E-value=0.0014  Score=59.19  Aligned_cols=104  Identities=11%  Similarity=-0.021  Sum_probs=83.7

Q ss_pred             HHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 015370          131 IDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       131 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  209 (408)
                      ...+...|++++|+..|++..... .+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|+++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            455677899999999999887764 467888889999999999999999999998875 456778999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSC  237 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~  237 (408)
                      +|...|++..+.  .|+......++..+
T Consensus        88 eA~~~~~~al~l--~P~~~~~~~~l~~~  113 (356)
T PLN03088         88 TAKAALEKGASL--APGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            999999999875  34544444444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.56  E-value=0.0043  Score=49.49  Aligned_cols=63  Identities=10%  Similarity=-0.057  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          193 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       193 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..|..+...+...|++++|+..|+........|  ...++..+...+...|++++|...++....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444445555555555555555554332111  123444455555555555555555555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.56  E-value=0.0045  Score=49.63  Aligned_cols=87  Identities=15%  Similarity=0.048  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT  200 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~  200 (408)
                      ..+..+...+...|++++|...|++.....++    ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            34555556666667777777666665433221    3566777777777777777777777777653 234556666666


Q ss_pred             HHHhcCCHHHHH
Q 015370          201 LYMSVGQVEKVA  212 (408)
Q Consensus       201 ~~~~~g~~~~a~  212 (408)
                      .+...|+...+.
T Consensus       115 ~~~~~g~~~~a~  126 (172)
T PRK02603        115 IYHKRGEKAEEA  126 (172)
T ss_pred             HHHHcCChHhHh
Confidence            666666644433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.56  E-value=0.00042  Score=45.73  Aligned_cols=64  Identities=19%  Similarity=0.132  Sum_probs=49.5

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALL  164 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll  164 (408)
                      .+.|++++|+++|+.+.+..  +-+...+..+..+|.+.|++++|.++++.+....|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            46788999999999988864  44677777888999999999999999998888777755555443

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.55  E-value=0.017  Score=50.53  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=13.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHH
Q 015370          160 YTALLHLYAGAKWTEKAEELFERV  183 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m  183 (408)
                      |....+.|-..|++++|.+.|.+.
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kA   61 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKA   61 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHH
Confidence            444455666666677666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.51  E-value=0.023  Score=49.63  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHH
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSD-DWVK  265 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~  265 (408)
                      |......|-..|++++|.+.|......    +-..+ ...|.....+| +..++++|.+.+++..+-   .|-+. -...
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~  116 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            334444555556666666655544311    11101 12222223333 333666666666554331   11111 1223


Q ss_pred             HHHHHHHHHHc-CchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----Ch
Q 015370          266 YVNLVNIYITA-SHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-----TS  334 (408)
Q Consensus       266 ~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~  334 (408)
                      +..+...|-.. |++++|.+ .+.+..+--...+     ..++..+...+.+.|++++|.++|++....-...     +.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            45555666666 77777777 6666554322111     2345566777778888888888887765543221     11


Q ss_pred             h-hHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          335 R-NYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       335 ~-~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      . .|...+-++...||...|.+.+++....
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            1 1223344555667888888888877654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.51  E-value=0.012  Score=55.76  Aligned_cols=138  Identities=12%  Similarity=0.036  Sum_probs=88.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC--------chhhhHHHHHH
Q 015370          222 NVVPDIFTYNLWISSCAATL-----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS--------HLVNAESSTLV  288 (408)
Q Consensus       222 g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~  288 (408)
                      +...|...|...+++.....     +.+.|..+|++..+.  .+.....|..+..+|....        +...+.+ ...
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~-~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST-ELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH-HHH
Confidence            34557778888887754322     266888888888773  3334445555444443321        1222222 222


Q ss_pred             HHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          289 EAEKS-ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       289 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..... ....+...|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.+++.....
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            22221 123344667777666667889999999999877764  677788888888999999999999998887754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.47  E-value=0.0043  Score=47.71  Aligned_cols=96  Identities=5%  Similarity=-0.114  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY  344 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  344 (408)
                      ..-.+..-+...|++++|.+ +|+.+..-. +.+...|-.|..++-..|++++|++.|.......+. |+..+-.+..++
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~-~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAAR-LFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHH-HHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence            34445555566666777766 555443332 235555666666666666777777766665555432 455555666666


Q ss_pred             HhcCCHHHHHHHHHHHHhh
Q 015370          345 LMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       345 ~~~g~~~~A~~~~~~~~~~  363 (408)
                      ...|+.+.|.+.|+..+..
T Consensus       114 L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            6667777776666666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.47  E-value=0.0005  Score=44.88  Aligned_cols=56  Identities=14%  Similarity=0.025  Sum_probs=36.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          341 LSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       341 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ...+.+.|++++|...|++.++..  +-+...|..+..++...|++++|..+|+++++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566677777777777776643  23556666666777777777777777777665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.023  Score=47.27  Aligned_cols=134  Identities=10%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS----  235 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----  235 (408)
                      .+.++.++...|++.-...++.+.++..-+.++.....|++.-.+.|+.+.|...|+...+..-+.|..+++.++.    
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3455555555555555555555555554444555555555555555666555555555443333333333333322    


Q ss_pred             -HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc
Q 015370          236 -SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ  296 (408)
Q Consensus       236 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  296 (408)
                       .+.-.+++..|...+.++...  .+-++...|.-.-+..-.|+..+|.+ .++.+....+.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK-~~e~~~~~~P~  318 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALK-QLEAMVQQDPR  318 (366)
T ss_pred             hheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHH-HHHHHhccCCc
Confidence             223344455555555544442  12233333332233333455555555 55555444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.45  E-value=0.0046  Score=49.35  Aligned_cols=64  Identities=14%  Similarity=-0.098  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      ..|..+...+...|++++|...|++.......++ ...++..+...|...|++++|.. .++....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al~  100 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE-YYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            3445555555566666666666666654211111 12345566666666666666666 5555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.44  E-value=0.0023  Score=51.67  Aligned_cols=100  Identities=22%  Similarity=0.285  Sum_probs=73.3

Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------
Q 015370          177 EELFERVKQSNLSFNALMYNEMMTLYMS-----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------  241 (408)
Q Consensus       177 ~~~~~~m~~~~~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------  241 (408)
                      ...|+.....  ..|-.+|..++..|.+     .|..+-....+..|.+.|+.-|..+|+.||+.+=+..          
T Consensus        34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~  111 (228)
T PF06239_consen   34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE  111 (228)
T ss_pred             HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence            3445554222  2467888888888875     4778888888999999999999999999999875421          


Q ss_pred             ------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch
Q 015370          242 ------NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL  279 (408)
Q Consensus       242 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  279 (408)
                            +-+-|++++++|.. +|+-||..++..+++.+.+.+..
T Consensus       112 F~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  112 FMHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             hccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence                  24567777777777 47777777777777777666653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.44  E-value=0.075  Score=46.99  Aligned_cols=105  Identities=18%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL  345 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  345 (408)
                      .+..+.-+...|+...|.+     +.+...-|+..-|-.-+.+++..++|++..++-..      +-.+.-|...+.+|.
T Consensus       180 l~~Ti~~li~~~~~k~A~k-----l~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEK-----LKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHH-----HHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            3444555556666666555     33333445666666666777777776666654321      113356666666666


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015370          346 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF  392 (408)
Q Consensus       346 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  392 (408)
                      +.|+..+|..++.++      + +    ..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~------~-~----~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI------P-D----EERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC------C-h----HHHHHHHHHCCCHHHHHHH
Confidence            667666666666651      1 1    2234555666666665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.16  Score=48.67  Aligned_cols=287  Identities=16%  Similarity=0.127  Sum_probs=153.3

Q ss_pred             HcCCCCChhhHHH-----HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcC---hHHHHHHHhcCCC
Q 015370           81 SEGNQATVSELRH-----ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFG---IHSGERYFEGLPL  152 (408)
Q Consensus        81 ~~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~  152 (408)
                      +-|++.+..-|..     +|+-+...+.+..|+++-.++...-  .-....|.....-+.+..+   -+-+..+-+++..
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~  502 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA  502 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence            4567777766654     6777778888888888887775432  1114555555555544422   2223333333332


Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------
Q 015370          153 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLS----FNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-------  221 (408)
Q Consensus       153 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------  221 (408)
                      .-....+|..+.+-.-.+|+.+.|..+++.=...+..    .+..-+...+.-+...|+.+....++-++..+       
T Consensus       503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~  582 (829)
T KOG2280|consen  503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF  582 (829)
T ss_pred             cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            2234556666666666677777776666532222100    01122333333344444444433333332221       


Q ss_pred             -----------------------------------------------------CCCCCHHHHHHHHHHHHhcCC------
Q 015370          222 -----------------------------------------------------NVVPDIFTYNLWISSCAATLN------  242 (408)
Q Consensus       222 -----------------------------------------------------g~~p~~~~~~~ll~~~~~~g~------  242 (408)
                                                                           |..|+   .....+++++...      
T Consensus       583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k  659 (829)
T KOG2280|consen  583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK  659 (829)
T ss_pred             HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence                                                                 00111   1111122222111      


Q ss_pred             ----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370          243 ----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       243 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                          ..+-..+.+.+..+.+..-...+.+--+..+...|+..+|.+     +.....-||-..|-.=+.+++..+++++.
T Consensus       660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q-----l~~~FkipdKr~~wLk~~aLa~~~kweeL  734 (829)
T KOG2280|consen  660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ-----LKSDFKIPDKRLWWLKLTALADIKKWEEL  734 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH-----HHHhcCCcchhhHHHHHHHHHhhhhHHHH
Confidence                111222333333333333333344455556666777777776     34445566777777777788888888877


Q ss_pred             HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015370          319 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH  393 (408)
Q Consensus       319 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  393 (408)
                      +++-+.+     + .+.-|...+.+|.+.|+.++|.+++.+.      .+..    -.+.+|.+.|++.+|.++-
T Consensus       735 ekfAksk-----k-sPIGy~PFVe~c~~~~n~~EA~KYiprv------~~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  735 EKFAKSK-----K-SPIGYLPFVEACLKQGNKDEAKKYIPRV------GGLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHhcc-----C-CCCCchhHHHHHHhcccHHHHhhhhhcc------CChH----HHHHHHHHhccHHHHHHHH
Confidence            7765543     2 2556777888888999999998888763      1111    4677788888888776543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.33  E-value=0.0041  Score=57.91  Aligned_cols=218  Identities=11%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             HHHHcCCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 015370          165 HLYAGAKW--TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV----PDIFTYNLWISSCA  238 (408)
Q Consensus       165 ~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ll~~~~  238 (408)
                      .+|.+.++  +-+...-+++++++|-.|+....   ...++-.|++.+|-++|.+--..+-.    .|...|. ...-+.
T Consensus       606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~  681 (1081)
T KOG1538|consen  606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFL  681 (1081)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHh
Confidence            44444443  22334445667777766775543   34455567777777776543221100    0111111 123344


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHH--------HHHHHHHhcccCccchHHHHHHHHH
Q 015370          239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS--------TLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      ..|..++-..+.++=-+   ..-+..--.+...++...|+.++|..+        ++-++..+....+..+...+..-+.
T Consensus       682 ~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk  758 (1081)
T KOG1538|consen  682 GSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLK  758 (1081)
T ss_pred             hcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHh
Confidence            45554444433332111   001111112445667777888877763        1222223333334455555555566


Q ss_pred             hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHH-----------HHHHHHHH
Q 015370          311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS-----------ACNRLLGA  379 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~li~~  379 (408)
                      +...+..|.++|..|-.         ...+++.....+++++|..+-++.-+   ..||+.           -|...-.+
T Consensus       759 ~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrFeEAqkA  826 (1081)
T KOG1538|consen  759 KLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRFEEAQKA  826 (1081)
T ss_pred             hccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhHHHHHHH
Confidence            67778888888876632         23577888889999999998887543   234432           24445678


Q ss_pred             HHhcCChHHHHHHHHHHHhcCC
Q 015370          380 FSDVGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       380 ~~~~g~~~~a~~~~~~m~~~g~  401 (408)
                      |.++|+..+|..+++++....+
T Consensus       827 fhkAGr~~EA~~vLeQLtnnav  848 (1081)
T KOG1538|consen  827 FHKAGRQREAVQVLEQLTNNAV  848 (1081)
T ss_pred             HHHhcchHHHHHHHHHhhhhhh
Confidence            8999999999999998876543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.33  E-value=0.025  Score=41.89  Aligned_cols=85  Identities=12%  Similarity=-0.075  Sum_probs=38.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHc
Q 015370          200 TLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG-SDDWVKYVNLVNIYITA  276 (408)
Q Consensus       200 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~  276 (408)
                      .++-..|+.++|..+|++....|....  ...+-.+...+...|++++|..++++......- +.+......+..++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            344445555555555555555554432  122333344455555555555555555442110 00122222233344555


Q ss_pred             CchhhhHH
Q 015370          277 SHLVNAES  284 (408)
Q Consensus       277 ~~~~~a~~  284 (408)
                      |+.++|.+
T Consensus        89 gr~~eAl~   96 (120)
T PF12688_consen   89 GRPKEALE   96 (120)
T ss_pred             CCHHHHHH
Confidence            55555555

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.32  E-value=0.0012  Score=43.63  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 015370          334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-LTEKANEFHMLLLQ  398 (408)
Q Consensus       334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  398 (408)
                      ...|..+...+...|++++|+..|++.++..  +.+...|..+..+|.+.| ++++|.+.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4566677777777888888888888877764  346667777777788887 67888888777765

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.28  E-value=0.0015  Score=42.56  Aligned_cols=56  Identities=11%  Similarity=0.048  Sum_probs=34.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      ...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345566666666666666666654 33555666666666666666666666666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.28  E-value=0.0011  Score=43.74  Aligned_cols=52  Identities=21%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      +.|++++|+++|+++.... |-+...+..+..+|.+.|++++|..+++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455555555555555443 224455555555555555555555555555543

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.27  E-value=0.12  Score=45.75  Aligned_cols=110  Identities=17%  Similarity=0.078  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHH
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII  307 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  307 (408)
                      .+.+..|.-+...|+...|.++-++.    .+ |+..-|-..+.+++..+++++-.+ +.    ..  +.++..|.-++.
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~-fa----~s--kKsPIGyepFv~  245 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEK-FA----KS--KKSPIGYEPFVE  245 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHH-HH----hC--CCCCCChHHHHH
Confidence            34555566677788888887775554    33 788889999999999999998777 32    22  335688999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          308 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       308 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      .|.+.|+..+|..+..+          .++..-+..|.+.|++.+|.+.--+
T Consensus       246 ~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  246 ACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999998875          2235678889999999999887554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.22  E-value=0.0019  Score=42.68  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKR  220 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  220 (408)
                      ..+|..+...+...|++++|+..|++..+.+ +-+...|..+..+|.+.| ++++|++.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4455556666666666666666666655553 334555666666666666 46666666655543

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.20  E-value=0.041  Score=40.73  Aligned_cols=108  Identities=13%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSC  237 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~  237 (408)
                      .+..++-..|+.++|+.+|++....|+...  ...+-.+...+...|++++|..++++.......+  +......+..++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            345667778999999999999998886554  3356677788888999999999999887653210  112222233466


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370          238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI  274 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  274 (408)
                      ...|+.++|.+.+-....     ++...|.--|..|.
T Consensus        86 ~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            778999998887766544     23335555555554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.19  E-value=0.12  Score=44.01  Aligned_cols=60  Identities=12%  Similarity=0.097  Sum_probs=36.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY---NEMMTLYMSVGQVEKVALVVEEIKRKN  222 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g  222 (408)
                      .....+.+.|++++|.+.|+++.... |-+..+-   -.+..++.+.+++++|...+++..+..
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34444555677777777777777653 1112221   344566677777777777777777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.18  E-value=0.12  Score=43.93  Aligned_cols=186  Identities=10%  Similarity=0.046  Sum_probs=113.1

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY---NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV  267 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  267 (408)
                      +...+-.....+...|++++|.+.|+.+...-..+ ...-   -.+..++.+.+++++|...+++..+...-.|+.. |.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HH
Confidence            33444445555677899999999999998864433 2222   3455677889999999999999888644444432 33


Q ss_pred             HHHHHHHH--cC---------------ch---hhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          268 NLVNIYIT--AS---------------HL---VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM  327 (408)
Q Consensus       268 ~li~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  327 (408)
                      ....+.+.  .+               +.   .+|..                .+..++.-|-...-..+|...+..++.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~----------------~~~~li~~yP~S~ya~~A~~rl~~l~~  172 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR----------------DFSKLVRGYPNSQYTTDATKRLVFLKD  172 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH----------------HHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            33333321  11               01   11222                333444444444445555554444332


Q ss_pred             ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .   .-. .--.+.+-|.+.|.+..|..-++.+++.-...| .......++.+|...|..++|..+...+..
T Consensus       173 ~---la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        173 R---LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             H---HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            1   011 111466778899999999999999987542222 334566788999999999999988776643

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.12  E-value=0.0091  Score=44.63  Aligned_cols=58  Identities=14%  Similarity=-0.065  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370          221 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH  278 (408)
Q Consensus       221 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  278 (408)
                      ....|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-....-+
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence            3466788888888888888888888888888887777777777777777775544433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.08  E-value=0.1  Score=41.25  Aligned_cols=131  Identities=12%  Similarity=0.080  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYN  231 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~  231 (408)
                      |++.---.|.+++...|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+.+   -.||.  --
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence            55555556666666666666666666666654444455666666666666666666666666665542   22332  23


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH
Q 015370          232 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE  291 (408)
Q Consensus       232 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  291 (408)
                      .+.+.+...|++++|+.-|+.....   -|+...-.-....+.+.|+.+++.. -+..+.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a-q~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA-QYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH-HHHHHH
Confidence            3445666666676677666666653   3444443344445556665555554 343333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.04  E-value=0.0024  Score=49.63  Aligned_cols=56  Identities=16%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      .++..+...|++++|..+.+.+....  +.|...|..+|.+|...|+..+|.++|+++
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            34445555566666666666665543  335555666666666666666666665554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.014  Score=49.56  Aligned_cols=85  Identities=16%  Similarity=0.125  Sum_probs=40.0

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAE  177 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~  177 (408)
                      .+.+++.+|+..|.+.++..  +-|..-|..-..+|++.|.++.|++=.+......| -..+|..|-.+|...|++++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            34445555555555555431  23334444444555555555555444444333222 2444555555555555555555


Q ss_pred             HHHHHHHh
Q 015370          178 ELFERVKQ  185 (408)
Q Consensus       178 ~~~~~m~~  185 (408)
                      +.|++.++
T Consensus       170 ~aykKaLe  177 (304)
T KOG0553|consen  170 EAYKKALE  177 (304)
T ss_pred             HHHHhhhc
Confidence            55555444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.98  E-value=0.027  Score=48.23  Aligned_cols=87  Identities=10%  Similarity=-0.001  Sum_probs=39.2

Q ss_pred             HhcCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC
Q 015370          310 AGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVG  384 (408)
Q Consensus       310 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g  384 (408)
                      .+.|++++|...|+.+.+..  |+.    ..+-.+...|...|++++|...|+.+.+.....| ....+-.+...+...|
T Consensus       154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            33455555555555554432  221    2333445555555555555555555544321111 1222333344444555


Q ss_pred             ChHHHHHHHHHHHh
Q 015370          385 LTEKANEFHMLLLQ  398 (408)
Q Consensus       385 ~~~~a~~~~~~m~~  398 (408)
                      +.++|..+|+++++
T Consensus       232 ~~~~A~~~~~~vi~  245 (263)
T PRK10803        232 DTAKAKAVYQQVIK  245 (263)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0033  Score=42.02  Aligned_cols=57  Identities=9%  Similarity=0.094  Sum_probs=32.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          307 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..|.+.+++++|.++++++...++. +...+.....++.+.|++++|.+.|++..+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            3455566666666666666555322 34444455556666666666666666666543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.94  E-value=0.07  Score=44.03  Aligned_cols=185  Identities=9%  Similarity=-0.031  Sum_probs=92.9

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC--HHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT--SETYTALL  164 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ll  164 (408)
                      ...+......+...|++.+|.+.|+.+....+..|- ....-.++.++-+.|+++.|...++++....|+  ...+...+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            344455666777889999999999999876422222 344556677888888888888888876655333  11222222


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSF---NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                      .+.+.........     ....+...   -...+..++.-|=...-..+|...+..+...   .-..- -.+.+-|.+.|
T Consensus        85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~  155 (203)
T PF13525_consen   85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRG  155 (203)
T ss_dssp             HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT
T ss_pred             HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcc
Confidence            2222111111110     00000000   0123444444444455555555555554432   01111 12455677778


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCchhhhH
Q 015370          242 NIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~  283 (408)
                      .+..|..-++.+.++.  +.+.   .....++.+|.+.|..+.+.
T Consensus       156 ~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8888887777777742  2222   22455666677777666443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.89  E-value=0.28  Score=43.46  Aligned_cols=293  Identities=12%  Similarity=0.034  Sum_probs=166.9

Q ss_pred             HHHHHHHHH--hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHH--HHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHH
Q 015370           91 LRHILKELR--KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDL--MTKVFGIHSGERYFEGLPLSAKT-SETYTALLH  165 (408)
Q Consensus        91 ~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~  165 (408)
                      |-.|-.++.  -.|+-..|.++-.+..+.  +..|......++.+  -.-.|+++.|.+-|+-|...+.. .--...|.-
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl  162 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL  162 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence            334444443  346777776666655432  45565555555543  34568888888888888763211 112233333


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHh---
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIF--TYNLWISSCAA---  239 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~---  239 (408)
                      .-.+.|..+.|.+.-++.-..- +--...+...+...+..|+|+.|+++++.-+... +.++..  .-..|+.+-..   
T Consensus       163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            4456677887877777766543 2234677888888888888888888887766433 444432  22233332211   


Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370          240 TLNIDQVKKFLDEMSCDSGGSDDWVK-YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                      ..+...|...-.+..+   +.|+..- -.....++.+.|+..++-. +++.+-+..+.|+..    ++..+.+.|+.  +
T Consensus       242 dadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~-ilE~aWK~ePHP~ia----~lY~~ar~gdt--a  311 (531)
T COG3898         242 DADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSK-ILETAWKAEPHPDIA----LLYVRARSGDT--A  311 (531)
T ss_pred             cCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhh-HHHHHHhcCCChHHH----HHHHHhcCCCc--H
Confidence            2345555555444433   2333322 2245567788888888888 888887777776532    22333445543  3


Q ss_pred             HHHHHHHHhc-cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 015370          319 DQIWKSLRMT-KQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD-VGLTEKANEFHML  395 (408)
Q Consensus       319 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~  395 (408)
                      ..-+++..+. ..+| +..+-..+..+-...|++..|..--+...+   ..|....|..|.+.-.. .|+-.++...+-+
T Consensus       312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence            3223222111 1234 344555566777777887777666655554   34666667655554433 4777777777777


Q ss_pred             HHhc
Q 015370          396 LLQK  399 (408)
Q Consensus       396 m~~~  399 (408)
                      .++.
T Consensus       389 av~A  392 (531)
T COG3898         389 AVKA  392 (531)
T ss_pred             HhcC
Confidence            6654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.87  E-value=0.0078  Score=46.71  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK-----RKNVVPDIFTY  230 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~  230 (408)
                      .+...++..+...|++++|.++.+.+.... |-|...|..+|.+|...|+..+|.++|+.+.     +.|+.|+..+-
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            345566777778888888888888888775 5577788888888888888888888888764     34777776554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.031  Score=46.49  Aligned_cols=145  Identities=12%  Similarity=0.028  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHH
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII  307 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  307 (408)
                      ..-+++++.+...|.+.-....++++.+. ..+.++.....|.+.-.+.|+.+.|.. .++++.+.....|..+++.++.
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-yf~~vek~~~kL~~~q~~~~V~  255 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEK-YFQDVEKVTQKLDGLQGKIMVL  255 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhhhhccchhHHHH
Confidence            44566777777888999999999999984 556788888899999999999999999 9999988777777777766543


Q ss_pred             -----HHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          308 -----LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       308 -----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                           .|...+++..|...+.+....... |+...|.-.-+..-.|+..+|.+.++.|+..   .|...+-++++-
T Consensus       256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es~~~  327 (366)
T KOG2796|consen  256 MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHESVLF  327 (366)
T ss_pred             hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhhHHH
Confidence                 345567888888888777655422 4444443333334468999999999999874   456655555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.051  Score=46.34  Aligned_cols=105  Identities=9%  Similarity=-0.008  Sum_probs=82.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC
Q 015370          150 LPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---QVEKVALVVEEIKRKNVVPD  226 (408)
Q Consensus       150 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~  226 (408)
                      +..++.|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++....   .-.++..+|+++...... |
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~  226 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-N  226 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-c
Confidence            44445688999999999999999999999999988764 567777777777765443   456888999999886443 6


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370          227 IFTYNLWISSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       227 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      ..+...+...+...|++.+|...|+.|.+.
T Consensus       227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            667777777888999999999999999883

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.85  E-value=0.018  Score=43.01  Aligned_cols=56  Identities=20%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370          328 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV  383 (408)
Q Consensus       328 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  383 (408)
                      ....|+..+..+++.+|+..|++..|+++++...+.-.++-+..+|..|+.-+...
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            34578888999999999999999999999999988765777788999999766554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.79  E-value=0.018  Score=49.30  Aligned_cols=98  Identities=9%  Similarity=0.005  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTY  230 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~  230 (408)
                      ...|...+..+.+.|++++|...|+.+...-  |+.    .++--+...|...|++++|...|+.+...-..  .....+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            4455655555566788888888888887753  332    46677778888888888888888888754211  123344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      -.+...+...|+.++|..+|+.+.+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556677788888888888888774

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.71  E-value=0.0054  Score=41.66  Aligned_cols=62  Identities=21%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          336 NYICILSSYLMLGHLKEVGEIIDQWKQS----ATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      +|+.+...|...|++++|+..|++..+.    |...|+ ..++..+..+|...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555555666666666666555431    111111 3455566666666666666666666554

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.71  E-value=0.018  Score=48.41  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=80.5

Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------------
Q 015370          143 GERYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV------------  205 (408)
Q Consensus       143 a~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------  205 (408)
                      .+..|........|..+|-+.+..+...     +.++-.-..+..|.+-|+.-|..+|+.|++.+-+.            
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            3445555554446677777777666543     56777777888899999999999999998887553            


Q ss_pred             ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 015370          206 ----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID-QVKKFLDEM  253 (408)
Q Consensus       206 ----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~  253 (408)
                          .+-+-+.+++++|...|+.||..+-..+++++.+.+-.- +..+..-.|
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence                234568889999999999999999999999998877542 333444444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.70  E-value=0.012  Score=39.26  Aligned_cols=55  Identities=18%  Similarity=0.067  Sum_probs=36.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ..|.+.+++++|.++++++...+  +.+...|.....++.+.|++++|.+.++...+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45566777777777777777653  33555666666677777777777777777765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.073  Score=45.43  Aligned_cols=127  Identities=12%  Similarity=-0.000  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNIDQVKKF  249 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~  249 (408)
                      .+....-++.-...+ |-|...|-.|..+|...|+++.|..-|....+.-. ++...+..+..++...   ..-.++..+
T Consensus       138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            344444444444444 56899999999999999999999999999887522 3555666666655443   235689999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHH
Q 015370          250 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI  306 (408)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  306 (408)
                      |+++..  ..+.++.+..-|...+...|++.+|.. .++.|.+..+..+  .+..+|
T Consensus       216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~~lp~~~--~rr~~i  267 (287)
T COG4235         216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLDLLPADD--PRRSLI  267 (287)
T ss_pred             HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCCCCC--chHHHH
Confidence            999998  456788888889999999999999999 8999988765533  344444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.67  E-value=0.16  Score=37.58  Aligned_cols=66  Identities=18%  Similarity=0.227  Sum_probs=38.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370          334 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  401 (408)
                      .......++.+...|+-+.-.++..++.+.+  .+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3344556666677777777777777766533  45666666677777777777777777777777665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.57  E-value=0.27  Score=38.92  Aligned_cols=103  Identities=8%  Similarity=-0.054  Sum_probs=48.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL  269 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  269 (408)
                      |+...--.|..+....|++.+|...|++...--..-|....-.+.++....+++..|...++++.+...---++...-.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            44444445555555555555555555555443333344444445555555555555555555554421111111122244


Q ss_pred             HHHHHHcCchhhhHHHHHHHHHHh
Q 015370          270 VNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       270 i~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      ...|...|...+|.. .|+.....
T Consensus       167 aR~laa~g~~a~Aes-afe~a~~~  189 (251)
T COG4700         167 ARTLAAQGKYADAES-AFEVAISY  189 (251)
T ss_pred             HHHHHhcCCchhHHH-HHHHHHHh
Confidence            445555555555555 44444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.57  E-value=0.34  Score=39.96  Aligned_cols=55  Identities=16%  Similarity=0.123  Sum_probs=25.1

Q ss_pred             HHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          166 LYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .+...|++++|.+.|+++...-  -+--..+.-.++.++.+.|++++|...+++..+
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555555431  011122334445555555555555555555544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.56  E-value=0.011  Score=40.15  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      .+|+.+...|...|++++|+..|++..+.    | -.|+ ..+++.+...|...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555556666666666666666554422    1 0111 3355555555666666666666555543

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.53  E-value=0.47  Score=45.35  Aligned_cols=85  Identities=8%  Similarity=-0.008  Sum_probs=47.4

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH-H
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR-L  376 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l  376 (408)
                      +....-.+..++.+.|.-++|.+.|-+-   + .|     ...+..|...+++.+|.++-++..     -|.+.+.-+ -
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~  916 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQ  916 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHH
Confidence            4455556777777777777777665321   1 12     135667777777888877766532     234433211 1


Q ss_pred             HHHHHhcCChHHHHHHHHHH
Q 015370          377 LGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       377 i~~~~~~g~~~~a~~~~~~m  396 (408)
                      ..-+...++.-+|.+..++.
T Consensus       917 aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  917 AAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHhhcchHHHHHHhhhc
Confidence            11233456666666665554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.19  Score=48.77  Aligned_cols=181  Identities=14%  Similarity=0.147  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370          124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL  201 (408)
Q Consensus       124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  201 (408)
                      ......-++.+.+...++.|..+-+.-... ++  ........+-+.+.|++++|...|-+-... +.|     ..+|.-
T Consensus       334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k  406 (933)
T KOG2114|consen  334 EKDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK  406 (933)
T ss_pred             eccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence            345566788888888999999886655432 21  334444556667889999999988776654 222     234566


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      |....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+ +...-|.   ...+..+.+.+-.++
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~---e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDV---ETALEILRKSNYLDE  481 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeH---HHHHHHHHHhChHHH
Confidence            66777788888889999999986 667778899999999999998888877663 2222233   367778888888888


Q ss_pred             hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      |.. +-....     .+...   +--.+-..+++++|++.++.|
T Consensus       482 a~~-LA~k~~-----~he~v---l~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  482 AEL-LATKFK-----KHEWV---LDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHH-HHHHhc-----cCHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence            877 333221     12222   333346788999999998865

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.65  Score=41.61  Aligned_cols=258  Identities=12%  Similarity=-0.020  Sum_probs=131.1

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCC
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKW  172 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~  172 (408)
                      .-..+.+..++..|+..+....+..  +-+..-|..-...+...|++++|.--.++-.... .....+.-.-.++...++
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            3345556677778888888777764  3334445555555556666666554332222211 111111122222222222


Q ss_pred             HHHHHHHHH---------------HHHhCCC-CCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          173 TEKAEELFE---------------RVKQSNL-SFNALMYNEMM-TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       173 ~~~A~~~~~---------------~m~~~~~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      ..+|.+.++               ....... +|.-.+|-.+- ..+...|++++|.++--...+..-   ...+...++
T Consensus       133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr  209 (486)
T KOG0550|consen  133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR  209 (486)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence            233332222               2111111 12223333332 234556788888777666655421   223344444


Q ss_pred             H--HHhcCCHHHHHHHHHHHhcCCCCCCCHHH-------------HHHHHHHHHHcCchhhhHHHHHHHHHHhcc---cC
Q 015370          236 S--CAATLNIDQVKKFLDEMSCDSGGSDDWVK-------------YVNLVNIYITASHLVNAESSTLVEAEKSIT---QR  297 (408)
Q Consensus       236 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~  297 (408)
                      +  +...++.+.+...|++..+-   -|+...             +..=.+-..+.|.+.+|.+ .+.+.....+   .+
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E-~Yteal~idP~n~~~  285 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE-CYTEALNIDPSNKKT  285 (486)
T ss_pred             ccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH-HHHHhhcCCccccch
Confidence            3  34467777888888776652   232221             1112233456777888877 6766655432   33


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      +...|-....+..+.|+.++|+.--++..+.    |..-   |..-..++...++|++|.+-++...+..
T Consensus       286 naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  286 NAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455666666677778888887766654432    2221   2222334455677888888777766543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.43  E-value=0.66  Score=41.70  Aligned_cols=168  Identities=11%  Similarity=0.009  Sum_probs=98.0

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCCCHHH
Q 015370          192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAA---TLNIDQVKKFLDEMSCDSGGSDDWVK  265 (408)
Q Consensus       192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~  265 (408)
                      ..+...++-.|....+++...++++.+....   +.-....-....-++.+   .|+.++|.+++..+... ...++..+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~  219 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT  219 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence            3444566667889999999999999998752   11122222233445666   89999999999985552 56678888


Q ss_pred             HHHHHHHHHHc---------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC-H---HHHHHHH---HH-HHhc
Q 015370          266 YVNLVNIYITA---------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN-K---DKIDQIW---KS-LRMT  328 (408)
Q Consensus       266 ~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~---~~a~~~~---~~-m~~~  328 (408)
                      |..+...|-..         ...++|.. .+.+.....  |+..+=-.+...+...|. .   .+..++-   .. +.+.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~-~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k  296 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIE-WYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK  296 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHH-HHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence            88888877432         12455666 555444433  332221112222223332 2   2223333   11 1123


Q ss_pred             cC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          329 KQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       329 ~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      |.   ..+-..+..++.+..-.|+.++|.+..++|.+.
T Consensus       297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            32   223344567788888888888888888888764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.54  Score=40.23  Aligned_cols=164  Identities=13%  Similarity=0.085  Sum_probs=109.6

Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCC
Q 015370           73 TNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPL  152 (408)
Q Consensus        73 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  152 (408)
                      .+-+++|..+-.++....-..-.......|++.+|..+|.......  +-+...--.+..+|...|+.+.|..+++.++.
T Consensus       119 esqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~  196 (304)
T COG3118         119 ESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL  196 (304)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence            4556666665555444444445567788899999999999998864  44456777788999999999999999999987


Q ss_pred             CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 015370          153 SAKTS--ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--NVVPDIF  228 (408)
Q Consensus       153 ~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~  228 (408)
                      ...+.  .....-|..+.+.....+...+-.+.-..  +-|...=..+...+...|+.+.|++.+-.+.++  |.. |..
T Consensus       197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~  273 (304)
T COG3118         197 QAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGE  273 (304)
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcH
Confidence            63332  22223344555555555444444444433  236777778888888999999999887777644  333 445


Q ss_pred             HHHHHHHHHHhcC
Q 015370          229 TYNLWISSCAATL  241 (408)
Q Consensus       229 ~~~~ll~~~~~~g  241 (408)
                      .-..++..+.-.|
T Consensus       274 ~Rk~lle~f~~~g  286 (304)
T COG3118         274 ARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHHhcC
Confidence            5555666655555

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.37  E-value=0.2  Score=43.83  Aligned_cols=151  Identities=17%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh--hc----ChHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHcCCC
Q 015370          104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTK--VF----GIHSGERYFEGLPLS-----AKTSETYTALLHLYAGAKW  172 (408)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~  172 (408)
                      +++.+++++.+.+.| +.-+..+|-+..-....  ..    ....|..+|+.|++.     +++..++..|+..  ..++
T Consensus        78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            567788999999987 88787777664444333  22    356788999999987     3567777777665  3333


Q ss_pred             ----HHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 015370          173 ----TEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN--  242 (408)
Q Consensus       173 ----~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--  242 (408)
                          .+.++.+|+.+.+.|+..+-.  ..+.++..+....+  ...+..+++.+.+.|+++....|..+.- ++-.++  
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl-Lall~~~~  233 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL-LALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH-HHhcCCch
Confidence                466788899999888665433  33333333322222  4578889999999999988877765533 332222  


Q ss_pred             ---HHHHHHHHHHHhcCCC
Q 015370          243 ---IDQVKKFLDEMSCDSG  258 (408)
Q Consensus       243 ---~~~a~~~~~~~~~~~~  258 (408)
                         .+...++.+.+.+..+
T Consensus       234 ~~~~~~i~ev~~~L~~~k~  252 (297)
T PF13170_consen  234 EKIVEEIKEVIDELKEQKG  252 (297)
T ss_pred             HHHHHHHHHHHHHHhhCcc
Confidence               3344555555555434

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.36  E-value=0.17  Score=47.61  Aligned_cols=176  Identities=13%  Similarity=0.047  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-C-------CHHHHHHHHHHHHc----CCCHH
Q 015370          107 ALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-K-------TSETYTALLHLYAG----AKWTE  174 (408)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~-------~~~~~~~ll~~~~~----~~~~~  174 (408)
                      ..-+|.-+.+.  +   |..+..+++..+-.|+-+.+++.+.+-.+.+ .       -.-.|...+..++.    ..+.+
T Consensus       176 G~G~f~L~lSl--L---Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  176 GFGLFNLVLSL--L---PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHh--C---CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            34556666553  2   2344556666666777777777776644421 1       12344555544443    34567


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370          175 KAEELFERVKQSNLSFNALMYNEM-MTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      .|.++++.+..+  -|+...|... .+.+...|++++|.+.|+......   .+.....+--+.-.+.-..++++|.+.|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            778888877776  3555555433 344556778888888887654311   1122334444555666677888888888


Q ss_pred             HHHhcCCCCCCCHHHHH-HHHHHHHHcCch-------hhhHHHHHHHHHH
Q 015370          251 DEMSCDSGGSDDWVKYV-NLVNIYITASHL-------VNAESSTLVEAEK  292 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~-~li~~~~~~~~~-------~~a~~~~~~~~~~  292 (408)
                      ..+.+.+..  +...|. ....++...++.       ++|.+ ++.++-.
T Consensus       329 ~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~-l~~~vp~  375 (468)
T PF10300_consen  329 LRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEE-LFRKVPK  375 (468)
T ss_pred             HHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHH-HHHHHHH
Confidence            887775333  223332 222334445555       67777 6666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.34  E-value=0.21  Score=47.07  Aligned_cols=164  Identities=15%  Similarity=0.045  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-----HHHHHHHHHHH----cCchhhhHHHHHHHHHHhcccCccc
Q 015370          230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-----KYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWI  300 (408)
Q Consensus       230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  300 (408)
                      +..++....-.||-+.+++.+.+..+..++.-...     .|...+..++.    ....+.|.+ ++..+...-  |+..
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~-lL~~~~~~y--P~s~  267 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE-LLEEMLKRY--PNSA  267 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH-HHHHHHHhC--CCcH
Confidence            44456666677899999998888777434432222     23344443333    345677888 777776654  3444


Q ss_pred             hHHH-HHHHHHhcCCHHHHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370          301 TYDF-LIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL  376 (408)
Q Consensus       301 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  376 (408)
                      .|.. -...+...|++++|++.|++......   +.....+--+...+.-.+++++|.+.|.++.+.+..  ...+|.-+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~  345 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHH
Confidence            4433 33456678999999999996543111   112233445667788889999999999999986533  34444444


Q ss_pred             HHH-HHhcCCh-------HHHHHHHHHHHh
Q 015370          377 LGA-FSDVGLT-------EKANEFHMLLLQ  398 (408)
Q Consensus       377 i~~-~~~~g~~-------~~a~~~~~~m~~  398 (408)
                      ..+ +...|+.       ++|.++|.+...
T Consensus       346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  346 AAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            433 3456777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.55  Score=40.20  Aligned_cols=149  Identities=13%  Similarity=0.083  Sum_probs=90.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID  244 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  244 (408)
                      ......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            34566788888888888877664 33456677788888888888888888887765432222233333444555555555


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK  317 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  317 (408)
                      +...+-.+.-.+   +.|...-..+...+...|+.+.|.+.++.-+.+...-.|...-..|+..+.-.|.-+.
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            555555555442   3466666677778888888888888344433333223344555566666655553333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.26  E-value=0.16  Score=47.11  Aligned_cols=26  Identities=8%  Similarity=0.119  Sum_probs=12.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          192 ALMYNEMMTLYMSVGQVEKVALVVEE  217 (408)
Q Consensus       192 ~~~~~~li~~~~~~g~~~~a~~~~~~  217 (408)
                      ...|..|.....+.|+++-|++.|++
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            34455555555555555555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.24  E-value=0.85  Score=41.02  Aligned_cols=79  Identities=10%  Similarity=-0.046  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-C----CHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCChhhHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSA-K----TSETYTALLHLYAG---AKWTEKAEELFERVKQSNLSFNALMYN  196 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~----~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~  196 (408)
                      .+...++-.|-...+++..+++.+.+...+ .    +..+-....-++.+   .|+-++|++++..+....-.+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344455556777778888888888777641 1    12222233444555   778888888888755555567777777


Q ss_pred             HHHHHHH
Q 015370          197 EMMTLYM  203 (408)
Q Consensus       197 ~li~~~~  203 (408)
                      .+...|-
T Consensus       222 L~GRIyK  228 (374)
T PF13281_consen  222 LLGRIYK  228 (374)
T ss_pred             HHHHHHH
Confidence            7776663

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.23  E-value=1.2  Score=42.47  Aligned_cols=178  Identities=13%  Similarity=0.038  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhccc--HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHH-----
Q 015370           91 LRHILKELRKSQR--YKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTAL-----  163 (408)
Q Consensus        91 ~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-----  163 (408)
                      ++..=++|.+-++  +-+.+.-+++++++| -.|+...   +...++-.|++.+|-++|.+--....-...|+-|     
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~  676 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDY  676 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence            3444455555544  334455556777776 4566543   3456777889999999887765432222233221     


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHhCCCCCC---HHHHHHHH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE------EIKRKNVVPD---IFTYNLWI  234 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~------~m~~~g~~p~---~~~~~~ll  234 (408)
                      ..-+.+.|.-++-..+.++--+.  .-|+.-=.+....+...|+.++|..+.-      -+.+-+.+.|   ..+...+.
T Consensus       677 aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a  754 (1081)
T KOG1538|consen  677 AQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCA  754 (1081)
T ss_pred             HHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHH
Confidence            22233333333322222211110  0011111233445556677777766531      1122222222   23333333


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      ..+-+...+..|.++|.+|-+.          ..++......+++.+|..
T Consensus       755 ~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFa  794 (1081)
T KOG1538|consen  755 TYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFA  794 (1081)
T ss_pred             HHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHh
Confidence            3444556667777777777552          256677777788888877

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.89  Score=40.78  Aligned_cols=155  Identities=11%  Similarity=-0.029  Sum_probs=105.5

Q ss_pred             HHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH-------------HHHHH
Q 015370           96 KELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS-------------ETYTA  162 (408)
Q Consensus        96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~~  162 (408)
                      .++.-.|+.++|.+.-..+.+..  ..+....-.-..++--.++.+.|...|++-...+|+-             ..|..
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence            34566788888888877777653  2233333333344556778889999998877766542             23344


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--HHH
Q 015370          163 LLHLYAGAKWTEKAEELFERVKQSN---LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLW--ISS  236 (408)
Q Consensus       163 ll~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l--l~~  236 (408)
                      =.+-..+.|++..|.+.|.+.+..+   ..|++..|-....+..+.|+.++|+.--+....-    |. .....+  ..+
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c  330 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANC  330 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHH
Confidence            4455678899999999999988653   5566667777777888899999998887776653    33 222223  335


Q ss_pred             HHhcCCHHHHHHHHHHHhcC
Q 015370          237 CAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~  256 (408)
                      +...+++++|.+-+++..+.
T Consensus       331 ~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            55678899999988887763

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.11  E-value=0.84  Score=39.78  Aligned_cols=224  Identities=13%  Similarity=0.114  Sum_probs=122.1

Q ss_pred             HcCCCHHHHHHHHHHHHhCC--CCCCh------hhHHHHHHHHHhcC-CHHHHHHHHHHHHhC--------CCCCCH---
Q 015370          168 AGAKWTEKAEELFERVKQSN--LSFNA------LMYNEMMTLYMSVG-QVEKVALVVEEIKRK--------NVVPDI---  227 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~g-~~~~a~~~~~~m~~~--------g~~p~~---  227 (408)
                      .+.|+.+.|..++.+.....  ..|+.      ..|+.-...+ +.+ +++.|...+++..+-        ...|+.   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            45677788888877766532  12221      1233333333 344 777776666554321        122332   


Q ss_pred             --HHHHHHHHHHHhcCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchH
Q 015370          228 --FTYNLWISSCAATLNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY  302 (408)
Q Consensus       228 --~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  302 (408)
                        .++..++.+|...+..+   +|..+++.+....+-+|  .++-.-+..+.+.++.+.+.+ .+.+|.....- ....+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~~-~e~~~  158 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEE-ILMRMIRSVDH-SESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHH-HHHHHHHhccc-ccchH
Confidence              45666777777766654   56667777766544333  444455666666788888888 77777776543 23444


Q ss_pred             HHHHHHHHh--cCCHHHHHHHHHHHHhccCCCChhhHH--HHHHH---HHhcC------CHHHHHHHHHHHHhhCCCCCC
Q 015370          303 DFLIILYAG--LGNKDKIDQIWKSLRMTKQKMTSRNYI--CILSS---YLMLG------HLKEVGEIIDQWKQSATSDFD  369 (408)
Q Consensus       303 ~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~---~~~~g------~~~~A~~~~~~~~~~~~~~~~  369 (408)
                      ..++..+..  ......|...+..+....+.|....+.  .++..   ..+.+      .++....+++...+....+.+
T Consensus       159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls  238 (278)
T PF08631_consen  159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS  238 (278)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence            555554422  233456667777666666666554111  11111   11211      255555666644433222333


Q ss_pred             HHH--------HHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          370 ISA--------CNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       370 ~~~--------~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      ..+        |+. ...+.+.+++++|.+.|+-..
T Consensus       239 ~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  239 AEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence            333        332 344677899999999998544

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=95.96  E-value=0.17  Score=39.35  Aligned_cols=92  Identities=8%  Similarity=-0.134  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 015370          268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML  347 (408)
Q Consensus       268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  347 (408)
                      ....-+...|++++|.. +|.-+..-. ..+..-|..|..++-..+++++|...|...-..+. -|+..+--...++...
T Consensus        42 ~~Ay~~y~~Gk~~eA~~-~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l  118 (165)
T PRK15331         42 AHAYEFYNQGRLDEAET-FFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHCCCHHHHHH-HHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence            44455667899999998 776654433 33556677788888888999999999886555443 2444555677888889


Q ss_pred             CCHHHHHHHHHHHHh
Q 015370          348 GHLKEVGEIIDQWKQ  362 (408)
Q Consensus       348 g~~~~A~~~~~~~~~  362 (408)
                      |+.+.|+..|+..++
T Consensus       119 ~~~~~A~~~f~~a~~  133 (165)
T PRK15331        119 RKAAKARQCFELVNE  133 (165)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999988776

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.92  E-value=0.55  Score=35.99  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      .++..+...+........++.+...+ +.+...++.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            44555555555666666666655554 24555566666666554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.90  E-value=0.05  Score=48.29  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHH----HhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hhCCCCCC
Q 015370          299 WITYDFLIILYAGLGNKDKIDQIWKSL----RMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWK----QSATSDFD  369 (408)
Q Consensus       299 ~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~  369 (408)
                      ...|..|...|.-.|+++.|+...+.=    ++-|-+. ....+..+..++.-.|+++.|.+.|+...    +.|.....
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            346667777777889999998766532    2222221 23457778899999999999999987643    33323334


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          370 ISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       370 ~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      ..+..+|...|.-..++++|+.++.+-
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            556677888888888899999888764

>PRK15331 chaperone protein SicA; Provisional

Probab=95.89  E-value=0.47  Score=36.99  Aligned_cols=78  Identities=5%  Similarity=-0.050  Sum_probs=34.1

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370          204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  283 (408)
                      ..|++++|..+|+-+...++. +..-+..|..++...+++++|...|...-.- . ..|+..+-....+|...|+.+.|+
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence            455555555555555443322 2222333444444455555555555443321 1 122222334444455555555555


Q ss_pred             H
Q 015370          284 S  284 (408)
Q Consensus       284 ~  284 (408)
                      .
T Consensus       126 ~  126 (165)
T PRK15331        126 Q  126 (165)
T ss_pred             H
Confidence            5

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.89  E-value=0.19  Score=45.78  Aligned_cols=63  Identities=19%  Similarity=0.034  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      +...|+.+..+|.+.|++++|+..|++.++.+  |+.    .+|..+..+|.+.|+.++|+..+++..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35556666666666666666666666655543  332    2355566666666666666666665555

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.85  E-value=0.17  Score=42.64  Aligned_cols=96  Identities=15%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHH
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLG  378 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~  378 (408)
                      |+.-+.. .+.|++..|.+-|....+....-  ....+-.|..++...|++++|..+|..+.+.....|- ...+-.|..
T Consensus       145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4443333 34455666666666655543210  1223444666666666666666666666554322222 244555566


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 015370          379 AFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       379 ~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +..+.|+.++|..+|++..+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            66666666666666666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.81  E-value=0.093  Score=47.74  Aligned_cols=66  Identities=12%  Similarity=-0.047  Sum_probs=47.1

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh----HHHHHHHHHHHhhcChHHHHHHHhcCCC
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD----SDYATRIDLMTKVFGIHSGERYFEGLPL  152 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~  152 (408)
                      .+.+...++.+..+|.+.|++++|+..|++..+.   .|+.    .+|..+..+|...|++++|+..+++...
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456677777888888888888888888887764   3443    3467777777777777777777776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.78  E-value=0.51  Score=43.87  Aligned_cols=136  Identities=18%  Similarity=0.175  Sum_probs=101.6

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLY  167 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~  167 (408)
                      ....+.++.-+-+.|..+.|+++-..-.             .-.....+.|+++.|.++-+++.    +...|..|.+..
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~A  357 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHH
Confidence            5557888999999999999987655432             23566788999999999877664    788999999999


Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015370          168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK  247 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  247 (408)
                      .+.|+++-|++.|++..+         |..|+-.|.-.|+.+...++.+.....|-      ++....++.-.|+.++..
T Consensus       358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred             HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence            999999999999987653         56778888899999888888888777653      444555666679999888


Q ss_pred             HHHHHHhc
Q 015370          248 KFLDEMSC  255 (408)
Q Consensus       248 ~~~~~~~~  255 (408)
                      +++.+..+
T Consensus       423 ~lL~~~~~  430 (443)
T PF04053_consen  423 DLLIETGR  430 (443)
T ss_dssp             HHHHHTT-
T ss_pred             HHHHHcCC
Confidence            88876443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.75  E-value=1.4  Score=39.36  Aligned_cols=265  Identities=12%  Similarity=0.002  Sum_probs=165.3

Q ss_pred             CCChhhHHHHHHHH--HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHH
Q 015370           85 QATVSELRHILKEL--RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYT  161 (408)
Q Consensus        85 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~  161 (408)
                      .-|..-+-.++.+-  .-.|+++.|.+-|+.|....  ..-.-....|.-..-+.|..+.|.++-+..-...|. ...+.
T Consensus       115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~  192 (531)
T COG3898         115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR  192 (531)
T ss_pred             hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence            34555555555443  34589999999999998631  112223344444456788888888887776655444 67888


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSN-LSFNAL--MYNEMMTLYMS---VGQVEKVALVVEEIKRKNVVPDIFTY-NLWI  234 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~--~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll  234 (408)
                      +++...|..|+|+.|+++++.-+... +.++..  .-..|+.+-..   .-+...|...-.+..+  +.||..-- ..-.
T Consensus       193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA  270 (531)
T COG3898         193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence            99999999999999999998766543 334433  22333433221   2345555555544443  45664322 2234


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHH--HhcccCccchHHHHHHHHHhc
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE--KSITQRQWITYDFLIILYAGL  312 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~  312 (408)
                      .++.+.|+..++-.+++.+-+.   .|.+..  ..+..+.+.|+.-...   +++..  ....+.+..+--.+..+-...
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~---ePHP~i--a~lY~~ar~gdta~dR---lkRa~~L~slk~nnaes~~~va~aAlda  342 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKA---EPHPDI--ALLYVRARSGDTALDR---LKRAKKLESLKPNNAESSLAVAEAALDA  342 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhc---CCChHH--HHHHHHhcCCCcHHHH---HHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence            6788899999999999988773   344443  3334445556543322   22221  233344556666677777788


Q ss_pred             CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 015370          313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~  363 (408)
                      |++..|..--+....  ..|....|..|.+.-. ..||-.++.+++.+.++.
T Consensus       343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            888887766554433  3677777777777543 559999999998887764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.48  Score=42.31  Aligned_cols=97  Identities=10%  Similarity=-0.009  Sum_probs=70.7

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA  379 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  379 (408)
                      .+++.|..+|.+.+++.+|++.-.+.+..+ .+|....-.=..+|...|+++.|+..|+++++..  +-|...-+.|+.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence            467778888899999999999888887775 3467676667788889999999999999998853  3355555556655


Q ss_pred             HHhcCChHH-HHHHHHHHHhc
Q 015370          380 FSDVGLTEK-ANEFHMLLLQK  399 (408)
Q Consensus       380 ~~~~g~~~~-a~~~~~~m~~~  399 (408)
                      --+..+... ..++|..|...
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            555444443 36788877643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.60  E-value=1.4  Score=38.94  Aligned_cols=21  Identities=24%  Similarity=0.074  Sum_probs=9.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHH
Q 015370          301 TYDFLIILYAGLGNKDKIDQI  321 (408)
Q Consensus       301 ~~~~li~~~~~~~~~~~a~~~  321 (408)
                      .+..|-..|.+..|+++|.-+
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f  184 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFF  184 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhh
Confidence            444444444445555444433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.34  E-value=2.2  Score=38.92  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH-HH
Q 015370          264 VKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-IL  341 (408)
Q Consensus       264 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li  341 (408)
                      .+|...+++-.+..-.+.|.. +|-+..+.+ ..+++..++++|..++ .|+...|..+|+.-...  .||...|.- .+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~-~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARK-LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHH-HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            345667777777777888888 888777766 6678888888887665 57778888888753332  456666543 56


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .-+...++-+.|..+|+..+..-  ..+  ...|..+|.--...|+...+..+-++|.+
T Consensus       474 ~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         474 LFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            66677889999999999655431  222  46788888888888988877776666654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.14  E-value=0.96  Score=33.70  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=78.8

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370          204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  283 (408)
                      -.|..++..++..+....   .+..-+|-+|--....-+-+-..++++.+-+-+.+.+-.. .-.++.+|.+.|...+- 
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~~se~-   88 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNKLSEY-   88 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH-
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcchHHH-
Confidence            356667777777766653   2344444444444444455566666666655322211111 23455566555544332 


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          284 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                                        ....+..+...|+-+...+++..+.+.+ .+++....-+..+|.+.|+..++.+++.+.-++
T Consensus        89 ------------------vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   89 ------------------VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             ------------------HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             ------------------HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence                              3345666678888888888888876533 677778888899999999999999999998887


Q ss_pred             C
Q 015370          364 A  364 (408)
Q Consensus       364 ~  364 (408)
                      |
T Consensus       150 G  150 (161)
T PF09205_consen  150 G  150 (161)
T ss_dssp             T
T ss_pred             c
Confidence            7

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.12  E-value=0.78  Score=40.17  Aligned_cols=26  Identities=12%  Similarity=0.317  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHhccCCCChhhHHHH
Q 015370          315 KDKIDQIWKSLRMTKQKMTSRNYICI  340 (408)
Q Consensus       315 ~~~a~~~~~~m~~~~~~p~~~~~~~l  340 (408)
                      ..++.++++.+.+.|+++....|..+
T Consensus       198 v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  198 VARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHcCCccccccccHH
Confidence            34667777777777777766665544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.11  E-value=0.8  Score=36.72  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      ...+..+...|++.|+.++|.+.|.++.+....+.  ...+-.+|......+++..+...+.+....--.++......-+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34566777777788888888888877777644333  2355667777777777777777766655322111111111112


Q ss_pred             H-----HHHhcCCHHHHHHHHHHHhc
Q 015370          235 S-----SCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       235 ~-----~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .     .+...+++..|-+.|-+...
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCc
Confidence            2     12345777777777766554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.08  E-value=0.47  Score=40.13  Aligned_cols=97  Identities=16%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHH
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWI  234 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll  234 (408)
                      .|+.-+.. .+.|++..|...|...++..-  .-....+--|...+...|++++|..+|..+.+.-.+ |- ..++--+.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            35544443 334556666666666655420  011223444555666666666666666555543211 11 13444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcC
Q 015370          235 SSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      .+..+.|+.++|..+|+++.++
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            5555566666666666666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.03  E-value=2.2  Score=37.22  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=14.3

Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 015370          343 SYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~  360 (408)
                      .+.+.+++++|.++|+-.
T Consensus       255 ~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHhhcCHHHHHHHHHHH
Confidence            356789999999999854

It is also involved in sporulation [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.01  E-value=1.2  Score=34.10  Aligned_cols=126  Identities=10%  Similarity=0.061  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      ..++..+...+.+.....+++.+... + ..+...++.++..|++.+. ++... .+..      ..+......++..|.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~~-~~ll~-~l~~------~~~~yd~~~~~~~c~   80 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYDP-QKEIE-RLDN------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHCH-HHHHH-HHHh------ccccCCHHHHHHHHH
Confidence            34566666677788888888887774 3 3566677888888877643 33333 2321      123444556777788


Q ss_pred             hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370          311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD  382 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  382 (408)
                      +.+.++++..++.++..         +...+..+... ++.+.|.+++.+       ..+...|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHHc
Confidence            88888888888876522         22334444444 788888888775       2356678878776654

>PRK11906 transcriptional regulator; Provisional

Probab=94.72  E-value=3.1  Score=38.31  Aligned_cols=160  Identities=8%  Similarity=-0.029  Sum_probs=85.5

Q ss_pred             HHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHc---------CchhhhHHHHHHHHHHhcc
Q 015370          231 NLWISSCAAT-----LNIDQVKKFLDEMSCDSGGSDD-WVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       231 ~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~  295 (408)
                      ...+++....     ...+.|..+|.+........|+ ...|..+..++...         ....+|.+ +.+...+.+ 
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~-~A~rAveld-  334 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALE-LLDYVSDIT-  334 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHHhcC-
Confidence            5555554432     1245677777777732233333 33444444443322         22334444 444443333 


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHH
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN  374 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  374 (408)
                      +.|......+..+..-.++++.|..+|++....  .||. ..|......+...|+.++|.+.+++..+....+.-.....
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~  412 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK  412 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence            335566666666667777788888888876654  4543 3444445555667888888888888665432222233333


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 015370          375 RLLGAFSDVGLTEKANEFHML  395 (408)
Q Consensus       375 ~li~~~~~~g~~~~a~~~~~~  395 (408)
                      -.+..|+..+ .+.|..++-+
T Consensus       413 ~~~~~~~~~~-~~~~~~~~~~  432 (458)
T PRK11906        413 ECVDMYVPNP-LKNNIKLYYK  432 (458)
T ss_pred             HHHHHHcCCc-hhhhHHHHhh
Confidence            3344555554 5566665543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.70  E-value=0.53  Score=40.42  Aligned_cols=78  Identities=15%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVVPDIFTYNL  232 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~  232 (408)
                      .++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            455666777777777777777777777765 45667777777777777777777777776654     466666665555


Q ss_pred             HHHH
Q 015370          233 WISS  236 (408)
Q Consensus       233 ll~~  236 (408)
                      ...+
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=2.2  Score=35.62  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA  168 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~  168 (408)
                      ..|.....+|...+++++|...+.+..+-  ...+...|+.       ...++.|.-+.+++..-+.-+..|+--...|.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45666677777788888888777766542  1222222221       22334444444444432223444555556677


Q ss_pred             cCCCHHHHHHHHHHH
Q 015370          169 GAKWTEKAEELFERV  183 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m  183 (408)
                      .+|..+.|-..+++.
T Consensus       103 E~GspdtAAmaleKA  117 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKA  117 (308)
T ss_pred             HhCCcchHHHHHHHH
Confidence            777766666555543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=1.4  Score=38.48  Aligned_cols=151  Identities=8%  Similarity=-0.068  Sum_probs=106.5

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHH----HHHHHHHHHcCCCH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSET----YTALLHLYAGAKWT  173 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~ll~~~~~~~~~  173 (408)
                      --.|++.+|-..++++.+.  .+.|...++.-=.+|.-.|+.+.-...++++... .+|...    ...+.-++..+|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3457788888889999886  5777888888888999999988888888887765 555433    33444556788999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---NVVPDIFTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      ++|++.-++..+.+ +-|..+-.+....+--.|++.++.++..+-...   +--.-..-|=...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999988876 557777778888888899999998887654321   00000011111122344568899999998


Q ss_pred             HH
Q 015370          251 DE  252 (408)
Q Consensus       251 ~~  252 (408)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            74

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=1.2  Score=39.92  Aligned_cols=126  Identities=6%  Similarity=0.006  Sum_probs=75.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQS-----NLS---------FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY  230 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~-----~~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  230 (408)
                      +.|.+.|++..|..-|++....     +.+         .-..+++.+..+|.+.+++.+|++.-......+. +|.-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence            4566677777777776664321     111         1134566677777778888888777777776543 355555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh-HHHHHHHHHHhc
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA-ESSTLVEAEKSI  294 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~~~  294 (408)
                      ---..++...|+++.|+..|+++.+.  -|.|-.+-+.|+.+--+.....+. .+ ++..|+...
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk-~y~~mF~k~  356 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKK-MYANMFAKL  356 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence            55666777778888888888887762  233444444555555555544444 33 566665543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.61  E-value=1.8  Score=34.15  Aligned_cols=33  Identities=6%  Similarity=0.099  Sum_probs=18.5

Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcccHHH
Q 015370           74 NVIQRWVSEGNQATVSELRHILKELRKSQRYKH  106 (408)
Q Consensus        74 ~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  106 (408)
                      +.++.+.+.|++|+...+..+++.+.+.|++..
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            334445555666666666666666666665443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.55  E-value=2.5  Score=37.39  Aligned_cols=127  Identities=11%  Similarity=0.124  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc---Ccc------
Q 015370          233 WISSCAATLNIDQVKKFLDEMSCDSGGSD----DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---RQW------  299 (408)
Q Consensus       233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~------  299 (408)
                      +-.++...+.++++++.|+...+-..-..    ...+|..|-..|.+..++++|.- +.....+-...   .|.      
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~-f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALF-FPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhh-hhHhHHHHHHhcCcCchhHHHHH
Confidence            44555555666666666665544211111    12346666666777777766665 33333221111   111      


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRM----TKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~  360 (408)
                      ...-.|.-++...|..-.|.+.-++..+    .|-+|. ......+.+.|-..|+.|.|..-|+..
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            1112334445556666666555554322    222211 112334556666677777666666553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.51  E-value=1.9  Score=34.02  Aligned_cols=96  Identities=16%  Similarity=0.282  Sum_probs=44.8

Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 015370          178 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS  257 (408)
Q Consensus       178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  257 (408)
                      +.+..+.+.+++|+...|..+++.+.+.|++..    +.++.+.++-+|.......+-.+.  +....+.++=-+|.++-
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence            344444555666666666666666666665443    333344445555544444333222  12223333333333321


Q ss_pred             CCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          258 GGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       258 ~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      +     ..+..++..+...|++-+|.+
T Consensus        89 ~-----~~~~~iievLL~~g~vl~ALr  110 (167)
T PF07035_consen   89 G-----TAYEEIIEVLLSKGQVLEALR  110 (167)
T ss_pred             h-----hhHHHHHHHHHhCCCHHHHHH
Confidence            1     013345555555666666655

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.50  E-value=0.41  Score=40.55  Aligned_cols=90  Identities=16%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 015370          190 FNALMYNEMMTLYMS-----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------------NIDQVKK  248 (408)
Q Consensus       190 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~~  248 (408)
                      -|-.+|-..+..+..     .+..+-....++.|.+.|+.-|..+|+.||+.+-+-.                +-+-++.
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence            356677777766653     3566777777889999999999999999998765432                2356889


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh
Q 015370          249 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLV  280 (408)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  280 (408)
                      ++++|.. .|+-||-.+-..|++++.+.+..-
T Consensus       145 vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~  175 (406)
T KOG3941|consen  145 VLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT  175 (406)
T ss_pred             HHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence            9999999 599999999999999998887643

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.41  E-value=3.9  Score=37.35  Aligned_cols=133  Identities=11%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          192 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       192 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      ..+|...+++-.+..-++.|..+|-++.+.| +.+++..++++|..++ .|+...|..+|+-=...  .+.+..--+-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3566677777777777888888888888777 5667777787777665 46777788888765542  233333345666


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ..+...++-+.|.. +|+....+.... -...|..+|.--..-|+...+..+=++|.+.
T Consensus       474 ~fLi~inde~nara-LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         474 LFLIRINDEENARA-LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHhCcHHHHHH-HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            77777788888887 676444332221 1346777777767777777777666666553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.23  E-value=0.21  Score=29.32  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~  186 (408)
                      +|..+...|...|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.20  E-value=0.25  Score=28.99  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370          336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL  376 (408)
Q Consensus       336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  376 (408)
                      ++..+...|.+.|++++|.++|++.++..  +-|...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence            45556667777777777777777777653  2344444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.18  E-value=5.8  Score=38.41  Aligned_cols=48  Identities=13%  Similarity=-0.082  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 015370          339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT  386 (408)
Q Consensus       339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  386 (408)
                      .|..--...|.++.|++.--.+.+-..+-|-...|+.|.-+-+....+
T Consensus      1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred             HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence            334444566888888776555544333456666777665554443333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.17  E-value=1.9  Score=32.81  Aligned_cols=72  Identities=10%  Similarity=0.050  Sum_probs=34.8

Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370          238 AATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      .+.|++++|.+.|+.+..+....+ ....--.|+.+|.+.+++++|.. .+++..+..+....+-|-..+.+++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a-~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIA-AYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCCCccHHHHHHHHH
Confidence            445666666666666655422111 12223345555555555555555 5555555444433344444444443

>PRK11906 transcriptional regulator; Provisional

Probab=94.13  E-value=4.7  Score=37.19  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             HHH--HHHHHHHHhhc-----ChHHHHHHHhcCC---CCCCC-HHHHHHHHHHHHc---------CCCHHHHHHHHHHHH
Q 015370          125 SDY--ATRIDLMTKVF-----GIHSGERYFEGLP---LSAKT-SETYTALLHLYAG---------AKWTEKAEELFERVK  184 (408)
Q Consensus       125 ~~~--~~li~~~~~~g-----~~~~a~~~~~~~~---~~~~~-~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~  184 (408)
                      ..|  ...+.+.....     ..+.|..+|.+..   ...|+ ...|..+..++..         .....+|.+.-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  55555554422     3467777888776   33343 4444444433322         234556777777777


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 015370          185 QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW  263 (408)
Q Consensus       185 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  263 (408)
                      +.+ +-|+.+...+..+....++++.|...|++....  .|| ..+|....-.+.-.|+.++|.+.+++..+-.......
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence            776 557788888888778888899999999888874  344 3444444444556689999999888866633333333


Q ss_pred             HHHHHHHHHHHHcCchhhhHH
Q 015370          264 VKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       264 ~~~~~li~~~~~~~~~~~a~~  284 (408)
                      ......+..|+.. ..++|.+
T Consensus       409 ~~~~~~~~~~~~~-~~~~~~~  428 (458)
T PRK11906        409 VVIKECVDMYVPN-PLKNNIK  428 (458)
T ss_pred             HHHHHHHHHHcCC-chhhhHH
Confidence            4444445566544 4666666

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.03  E-value=1.4  Score=32.74  Aligned_cols=89  Identities=15%  Similarity=-0.052  Sum_probs=57.3

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHH---HHHHHhc
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLW---ISSCAAT  240 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l---l~~~~~~  240 (408)
                      -+++..|+++.|++.|.+.+.. .|-....||.-..++.-.|+.++|+.=+++..+. |.+ +...+.+.   ...|-..
T Consensus        51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            4566778888888888777765 2456777888888888888888887777766643 222 33333322   2245556


Q ss_pred             CCHHHHHHHHHHHhc
Q 015370          241 LNIDQVKKFLDEMSC  255 (408)
Q Consensus       241 g~~~~a~~~~~~~~~  255 (408)
                      |+-+.|..=|+..-+
T Consensus       129 g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQ  143 (175)
T ss_pred             CchHHHHHhHHHHHH
Confidence            777777766666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.93  E-value=2.5  Score=33.27  Aligned_cols=52  Identities=10%  Similarity=0.035  Sum_probs=22.1

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .+|.++.+....+.+-..|-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            3444444444444443333222233333343444444444444444444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.62  E-value=3.9  Score=34.48  Aligned_cols=61  Identities=10%  Similarity=-0.053  Sum_probs=38.7

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCC
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLS  153 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  153 (408)
                      .-...-.+.|++++|.+.|+.+..+.+..|- ..+--.++.++-+.++++.|+...++....
T Consensus        39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3334445778888888888888776432222 334445556667777788777777765554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=7.8  Score=37.87  Aligned_cols=114  Identities=12%  Similarity=0.064  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370          225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF  304 (408)
Q Consensus       225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      -...+.+--+.-+...|+-.+|.++-.+.+-     ||-..|-.-+.+++..+++++-.+ +-+    ..  ....-|.-
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLek-fAk----sk--ksPIGy~P  749 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEK-FAK----SK--KSPIGYLP  749 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHH-HHh----cc--CCCCCchh
Confidence            3444555556667778999999888766543     788888888999999999998777 322    21  23567778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      ...+|.+.|+.++|.+++.+..     +.    .-.+.+|.+.|++.+|.++--+
T Consensus       750 FVe~c~~~~n~~EA~KYiprv~-----~l----~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  750 FVEACLKQGNKDEAKKYIPRVG-----GL----QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHHHhcccHHHHhhhhhccC-----Ch----HHHHHHHHHhccHHHHHHHHHH
Confidence            8999999999999999987532     11    1578899999999999887554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.54  E-value=1.4  Score=35.31  Aligned_cols=63  Identities=11%  Similarity=0.158  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          193 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       193 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..+..+...|.+.|+.++|++.|.++.+....|..  ..+-.+|+.....+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            46788889999999999999999998877555443  4566778888888899888888877765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.48  E-value=5.6  Score=35.88  Aligned_cols=66  Identities=12%  Similarity=-0.023  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          261 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRM  327 (408)
Q Consensus       261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  327 (408)
                      ....+|..++..+.+.|.++.|.. .+..+.......   .....-.-+......|+..+|...++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~-~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALS-ALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHH-HHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556777777777888887777 666665533221   222333344555667777777777776665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.29  E-value=7  Score=36.40  Aligned_cols=57  Identities=12%  Similarity=0.021  Sum_probs=31.8

Q ss_pred             HHHHHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          268 NLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      .+..++.+.|+.++|.+ .+.++.+..+.. +......|+.++...+.+.++..++.+.
T Consensus       264 RLAmCarklGr~~EAIk-~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIK-MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHhCChHHHHH-HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            45555556666666666 555555544332 2334455666666666666666666654

The molecular function of this protein is uncertain.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.29  E-value=4  Score=33.57  Aligned_cols=202  Identities=15%  Similarity=0.053  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      ...+......+...+.+..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            344444455555555555555555544431 1122334444445555555555555555555554332221 11111111


Q ss_pred             -HHHhcCCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 015370          236 -SCAATLNIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL  312 (408)
Q Consensus       236 -~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  312 (408)
                       .+...|+++.+...+++... ...  ......+......+...++.+.+.. .+..............+..+...+...
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALE-LLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHHHhhCcccchHHHHHhhHHHHHc
Confidence             45555666666665555533 111  1122223333333445555555555 444444332221234445555555555


Q ss_pred             CCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          313 GNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       313 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ++++.+...+.......  |+ ...+..+...+...+..+++...+.+....
T Consensus       216 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         216 GKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             ccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666666666554432  22 223333333333555666666666666553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.28  E-value=2.9  Score=31.89  Aligned_cols=53  Identities=9%  Similarity=-0.026  Sum_probs=22.5

Q ss_pred             HcCchhhhHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          275 TASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       275 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      +.|++++|.+ .|+.+...-+...  ...--.|+.+|.+.+++++|...+++..+.
T Consensus        22 ~~~~Y~~A~~-~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIK-QLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHH-HHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4444444444 4444444332211  122223444444445555555444444444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.24  E-value=0.72  Score=39.62  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=35.1

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      .++..++..+...|+.+.+...++++..... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3455555555566666666666665555432 2555566666666666666666666655543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.23  E-value=4.1  Score=33.50  Aligned_cols=223  Identities=14%  Similarity=-0.020  Sum_probs=153.9

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCC---CCCCHHHHHHHHHHHHcCCCHHHHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPL---SAKTSETYTALLHLYAGAKWTEKAE  177 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~  177 (408)
                      .+....+...+...............+......+...+.+..+...+.....   .......+..+...+...++.+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            4566667677777666431111357777778888888888888888777653   2456777778888888888899999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          178 ELFERVKQSNLSFNALMYNEMMT-LYMSVGQVEKVALVVEEIKRKNV--VPDIFTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       178 ~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      +.+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            9999888765332 233333333 78899999999999998855221  1233444444455677889999999999988


Q ss_pred             cCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          255 CDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       255 ~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ..  .+. ....+..+...+...++.+.+.. .+.......+. ....+..+...+...+..+.+...+.+....
T Consensus       195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KL--NPDDDAEALLNLGLLYLKLGKYEEALE-YYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hh--CcccchHHHHHhhHHHHHcccHHHHHH-HHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            73  333 46778888888988998999988 67666555433 2334444444455667788888888876655

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.11  E-value=0.23  Score=27.64  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=11.2

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHH
Q 015370          160 YTALLHLYAGAKWTEKAEELFER  182 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~  182 (408)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44445555555555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.08  E-value=0.23  Score=27.59  Aligned_cols=27  Identities=33%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +|+.|...|.+.|++++|.++|++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467788888888888888888888553

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.87  E-value=3.8  Score=32.27  Aligned_cols=135  Identities=17%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      +...|..-++ +++.+..++|+.-|.++.+.|...=+ -.--.+.......|+-..|...|++.-.....|-..-=..-+
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            3344444443 23445556666666666665532110 111112223345566666666666665544334332111112


Q ss_pred             H---HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          235 S---SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       235 ~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      +   .+...|.++++....+-+..+ +.+.-...-.+|..+-.+.|++.+|.+ .|..+...
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~D  196 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIAND  196 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHcc
Confidence            2   234556666666666665553 444444445566666666666666666 55555443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.66  E-value=2.6  Score=39.94  Aligned_cols=149  Identities=12%  Similarity=0.107  Sum_probs=88.4

Q ss_pred             hhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          136 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV  215 (408)
Q Consensus       136 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  215 (408)
                      -.|+++.|..++..++     ...-+.+++.+-+.|-.++|+++-         +|..--   .....+.|+++.|.++.
T Consensus       598 mrrd~~~a~~vLp~I~-----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la  660 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP-----KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLA  660 (794)
T ss_pred             hhccccccccccccCc-----hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHH
Confidence            3455555555444443     234455566666666666665542         222211   12234667888877776


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370          216 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       216 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  295 (408)
                      .+..      +..-|..|.++....+++..|.+.|....+          |..|+..+...|+-+.-.. +-....+.+.
T Consensus       661 ~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~-la~~~~~~g~  723 (794)
T KOG0276|consen  661 VEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAV-LASLAKKQGK  723 (794)
T ss_pred             Hhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHH-HHHHHHhhcc
Confidence            5442      556788888888888888888888877665          3466777777777665444 3333333332


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      .      |.-..+|...|+++++.+++.+
T Consensus       724 ~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  724 N------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             c------chHHHHHHHcCCHHHHHHHHHh
Confidence            2      2334455677888888877753

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=12  Score=37.26  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=37.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          339 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       339 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      -++..+.+..+.+.+..+.+..-     +-+...|..++..+++.+.++...++..+.+
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g-----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl  763 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLG-----KEDPSLWLHALKYFVSEESIEDCYEIVYKVL  763 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhC-----ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            35566677777777777776642     2377889999999999987766665554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.58  E-value=0.32  Score=26.45  Aligned_cols=27  Identities=30%  Similarity=0.260  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +|..+..+|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455566666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.52  E-value=4.1  Score=31.73  Aligned_cols=21  Identities=14%  Similarity=-0.061  Sum_probs=10.0

Q ss_pred             HhhcChHHHHHHHhcCCCCCC
Q 015370          135 TKVFGIHSGERYFEGLPLSAK  155 (408)
Q Consensus       135 ~~~g~~~~a~~~~~~~~~~~~  155 (408)
                      ...|++.+|.++|+++....|
T Consensus        55 i~r~~w~dA~rlLr~l~~~~~   75 (160)
T PF09613_consen   55 IVRGDWDDALRLLRELEERAP   75 (160)
T ss_pred             HHhCCHHHHHHHHHHHhccCC
Confidence            444455555555555444333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.28  E-value=16  Score=37.92  Aligned_cols=80  Identities=13%  Similarity=0.020  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSR--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD  382 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  382 (408)
                      -+.+|...|+|++|+.+..++....   +..  +-..|+.-+...++.-+|-++..+...    .|     ...+..|++
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~k 1038 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCK 1038 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhh
Confidence            4556667777777777766553211   111  113466667777888777777776532    11     223445667


Q ss_pred             cCChHHHHHHHHHH
Q 015370          383 VGLTEKANEFHMLL  396 (408)
Q Consensus       383 ~g~~~~a~~~~~~m  396 (408)
                      ...|++|..+...-
T Consensus      1039 a~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKA 1052 (1265)
T ss_pred             HhHHHHHHHHHHhc
Confidence            77777777665443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.21  E-value=9.9  Score=35.45  Aligned_cols=82  Identities=12%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370          303 DFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  381 (408)
                      ..|..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+..+....+--..+|+..+--+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            456667778999999999999998754221 2334567999999999999999999998654322223456766554444


Q ss_pred             hcC
Q 015370          382 DVG  384 (408)
Q Consensus       382 ~~g  384 (408)
                      ..+
T Consensus       343 av~  345 (539)
T PF04184_consen  343 AVG  345 (539)
T ss_pred             hhc
Confidence            333

The molecular function of this protein is uncertain.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.04  E-value=0.0082  Score=46.42  Aligned_cols=82  Identities=12%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      +..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++..       +.+-...++..|.+.|.+
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~   86 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY   86 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence            3444445555555555555554443344555566666666665555555555411       112222344444555555


Q ss_pred             HHHHHHHHH
Q 015370          244 DQVKKFLDE  252 (408)
Q Consensus       244 ~~a~~~~~~  252 (408)
                      +++..++.+
T Consensus        87 ~~a~~Ly~~   95 (143)
T PF00637_consen   87 EEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            555554444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.93  E-value=4.9  Score=31.31  Aligned_cols=56  Identities=14%  Similarity=0.082  Sum_probs=31.5

Q ss_pred             HHHHHHcCchhhhHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          270 VNIYITASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       270 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      +..-.+.++.+++.. ++..+..-.+. +...++...  .+...|++.+|..+|+++.+.
T Consensus        17 ~~~al~~~~~~D~e~-lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   17 LSVALRLGDPDDAEA-LLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHHHccCChHHHHH-HHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence            334456667777777 66655443222 122233322  346777888888888776554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.88  E-value=8.4  Score=33.91  Aligned_cols=48  Identities=10%  Similarity=0.004  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      |++.+|-..++++++. .|.|..+++..=.+|.-.|+.+.....++++.
T Consensus       117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi  164 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII  164 (491)
T ss_pred             ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence            4444444444444433 23444444444444555554444444444444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.79  E-value=3.5  Score=30.76  Aligned_cols=89  Identities=16%  Similarity=0.034  Sum_probs=65.7

Q ss_pred             HHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CC-C---HHHHHHHHHHHHcCC
Q 015370           97 ELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AK-T---SETYTALLHLYAGAK  171 (408)
Q Consensus        97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-~---~~~~~~ll~~~~~~~  171 (408)
                      +++..|+.+.|++.|.+....  .+-....||.-..++--.|+.++|+.=+++..+. ++ +   -..|.--...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            567889999999999988875  3556788999899998889988888877765443 22 2   223334445567778


Q ss_pred             CHHHHHHHHHHHHhCC
Q 015370          172 WTEKAEELFERVKQSN  187 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~  187 (408)
                      +.+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            8888888888877776

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.73  E-value=7.5  Score=33.04  Aligned_cols=25  Identities=20%  Similarity=0.460  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          301 TYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       301 ~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      .|..=|..|....+-.+...+|+..
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqa  217 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQA  217 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHH
Confidence            4445555565555555555555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.98  E-value=0.63  Score=25.09  Aligned_cols=27  Identities=30%  Similarity=0.251  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .|..+...+.+.|++++|.+.+++.++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344455556666666666666666555

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.77  E-value=2.4  Score=29.60  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      .=++.+-++.+...++.|++....+.+.+|.+.+++..|.++|+..+
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33455556666666666666666666666666666666666666555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.32  E-value=3.2  Score=29.40  Aligned_cols=63  Identities=8%  Similarity=-0.024  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      +.-+..+-+..+....+.|++....+.+++|-+.+++..|.++|+-.+.+....  ...|..+++
T Consensus        25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            334566677777778889999999999999999999999999999988765332  226666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.26  E-value=0.39  Score=26.31  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=9.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKV  211 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a  211 (408)
                      |..+|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            344444444444444444444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.21  E-value=2.2  Score=30.18  Aligned_cols=45  Identities=9%  Similarity=0.165  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          211 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..+-+..+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333444444444555555555555555555555555555555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.96  E-value=7.3  Score=29.89  Aligned_cols=55  Identities=13%  Similarity=-0.006  Sum_probs=31.1

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT  156 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  156 (408)
                      ..++++++..+++.|.--.+-.+...++-.  -.+...|++++|.++|+++....+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCC
Confidence            356677777777777653211222233322  3345667777777777777765444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.72  E-value=3.8  Score=28.70  Aligned_cols=63  Identities=8%  Similarity=-0.034  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      +.-++.+-++.+....+.|++....+.+++|-+.+|+..|.++|+-.+.+..  .+...|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            4456677777777888899999999999999999999999999998876542  24446665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.52  E-value=18  Score=33.86  Aligned_cols=164  Identities=11%  Similarity=0.046  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      .|....-+++..+.....+.-++.+-.+|...|  .+-..|-.++..|..+ ..++-..+|+++.+..+. |.+.-.-|.
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            344455556666666666666666666666654  2455566666666655 445556666666554332 222222233


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh-cccCccchHHHHHH
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDD------WVKYVNLVNIYITASHLVNAESSTLVEAEKS-ITQRQWITYDFLII  307 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~  307 (408)
                      ..| ..++.+.+..+|.++..+  +.|.      ...|.-|+..-  ..+.+.... +..++... +...-.+.+.-+-.
T Consensus       140 ~~y-Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-l~~kiqt~lg~~~~~Vl~qdv~~  213 (711)
T COG1747         140 DKY-EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-LQKKIQTKLGEGRGSVLMQDVYK  213 (711)
T ss_pred             HHH-HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-HHHHHHHhhccchHHHHHHHHHH
Confidence            333 335555666666555542  1120      11233332211  233344444 33333322 22222233333444


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc
Q 015370          308 LYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       308 ~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      -|....++++|++++..+.+.
T Consensus       214 ~Ys~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         214 KYSENENWTEAIRILKHILEH  234 (711)
T ss_pred             HhccccCHHHHHHHHHHHhhh
Confidence            455566666666666655443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=89.44  E-value=11  Score=31.09  Aligned_cols=62  Identities=15%  Similarity=0.064  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhC
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL--YMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ..+||-|.-.+...|+++.|.+.|+...+.+..   .-|..+=++  +.--|++..|.+=+.+.-+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence            567777777788888888888888888776522   222222222  22457777777666555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.37  E-value=0.59  Score=25.60  Aligned_cols=32  Identities=19%  Similarity=0.101  Sum_probs=21.4

Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370          357 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      |++.++..  +-|...|+.+...|...|++++|.
T Consensus         2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444433  446777888888888888887775

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.37  E-value=11  Score=32.88  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=73.4

Q ss_pred             CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhh
Q 015370          120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM  194 (408)
Q Consensus       120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  194 (408)
                      ...+..+...++..-....++++++.++-+++...     ++. +-.+.++.+.+ -+.++++.++..=++-|+-||..+
T Consensus        60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence            34455566666666666778889988877776642     221 12223333333 356789999988889999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEIKRKN  222 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g  222 (408)
                      ++.+|+.+.+.+++.+|..+.-.|....
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888777543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.10  E-value=27  Score=35.17  Aligned_cols=200  Identities=13%  Similarity=0.001  Sum_probs=102.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHH
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWIS-SCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLV  270 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li  270 (408)
                      .....++++|..++.+....-..|+.       ..++.+-. .....|+++.+.++.+.....   .-..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34567888888888777643222221       13333322 233468888888877766553   12233445567777


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHH---HHHH--HHHhcCCHHH--HHHHHHHHHhccC--CC----ChhhH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYD---FLII--LYAGLGNKDK--IDQIWKSLRMTKQ--KM----TSRNY  337 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~--~~~~~~~~~~--a~~~~~~m~~~~~--~p----~~~~~  337 (408)
                      .+..-.|++++|.. +.....+....-++..+.   .+..  .+...|+...  .+..|........  +|    -...+
T Consensus       505 ~a~~~~G~~~~Al~-~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         505 EAAHIRGELTQALA-LMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             HHHHHhchHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            77888888888888 666665554444444332   2222  2344563322  2223332222111  11    12234


Q ss_pred             HHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 015370          338 ICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISA--CNRLLGAFSDVGLTEKANEFHMLLLQKNCAP  403 (408)
Q Consensus       338 ~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  403 (408)
                      ..+..++.+. +...+|..-+.-..... ..|-...  +..|+......|+.++|...++++......+
T Consensus       584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         584 AQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             HHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            4455555441 12222222222222211 1222222  2256777778899999988888887654444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.04  E-value=1.1  Score=24.14  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=9.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      |..+...|...|++++|+..|++.
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHH
Confidence            333333444444444444444333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.70  E-value=1.2  Score=25.36  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      +++.|...|...|++++|+.++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444444444444444444444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.66  E-value=1.3  Score=25.18  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555555666666666666555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.55  E-value=20  Score=33.07  Aligned_cols=276  Identities=13%  Similarity=0.064  Sum_probs=134.2

Q ss_pred             HHhcccHHHHHHHHHHHHhccCCCCChH------HHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH--HHc
Q 015370           98 LRKSQRYKHALEISEWMVTHKEFVLSDS------DYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL--YAG  169 (408)
Q Consensus        98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~--~~~  169 (408)
                      +-+.+++.++.++|.++-+..  ..++.      .-+.++++|... +++.....+..+.+..| ...|-.|..+  +-+
T Consensus        16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            457788899999998887653  33322      233555665543 44444444444443323 2223333222  345


Q ss_pred             CCCHHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHH
Q 015370          170 AKWTEKAEELFERVKQS--NLSF------------NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN----VVPDIFTYN  231 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~  231 (408)
                      .+++.+|.+.+..-.+.  +-.|            |...=+..+..+...|++.++..++++|...=    ...+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            67788888887766554  2111            22222455666778888888888888776543    336777777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370          232 LWISSCAATLNIDQVKKFLDEMSCD--SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY  309 (408)
Q Consensus       232 ~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  309 (408)
                      .++-.++++        +|-++++.  ..+-|+   |--++..|.+.=+.-++..  ++     ..-|.......++...
T Consensus       172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~--Y~-----k~~peeeL~s~imqhl  233 (549)
T PF07079_consen  172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP--YE-----KFIPEEELFSTIMQHL  233 (549)
T ss_pred             HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch--HH-----hhCcHHHHHHHHHHHH
Confidence            755555432        22222221  122222   3344444443222111111  00     1112222222233222


Q ss_pred             Hhc--CCHHHHHHHHHHHHhccCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHh
Q 015370          310 AGL--GNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQSATSD----FDISACNRLLGAFSD  382 (408)
Q Consensus       310 ~~~--~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~li~~~~~  382 (408)
                      .-.  .+..--++++..-...-+.|+... ...++..+.+  +.+++..+.+.+.... +.    .=+.++..++....+
T Consensus       234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~-i~~Lke~li~~F~~~Ls~~Vk  310 (549)
T PF07079_consen  234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK-IEKLKEELIDRFGNLLSFKVK  310 (549)
T ss_pred             HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Confidence            211  111222223332233334554332 2234444443  5555555555544321 11    123467777777788


Q ss_pred             cCChHHHHHHHHHHHh
Q 015370          383 VGLTEKANEFHMLLLQ  398 (408)
Q Consensus       383 ~g~~~~a~~~~~~m~~  398 (408)
                      .++...|.+.+.-+.-
T Consensus       311 ~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  311 QVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHhHHHHHHHHHHHHh
Confidence            8888888777776654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.00  E-value=7.1  Score=31.74  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=43.0

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHcCchh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHLV  280 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~  280 (408)
                      .+.|+ +.|++.|-++...+..-+......+...|. ..+.+++..++.....-.  +-.+|+..+.+|+..|.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34444 556666666665554434444444333333 456666666665544321  22456666667777777777666


Q ss_pred             hhH
Q 015370          281 NAE  283 (408)
Q Consensus       281 ~a~  283 (408)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            664

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.67  E-value=7.9  Score=27.36  Aligned_cols=86  Identities=14%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 015370          103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFER  182 (408)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~  182 (408)
                      ..++|..+-+++...+  ......--+-+..+...|++++|..+.+.+.  .||...|-+|-..  +.|..+++..-+.+
T Consensus        20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~r   93 (115)
T TIGR02508        20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLNR   93 (115)
T ss_pred             HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence            5678888888887654  1122222233456678899999999988886  4899988887654  66777777777888


Q ss_pred             HHhCCCCCChhhH
Q 015370          183 VKQSNLSFNALMY  195 (408)
Q Consensus       183 m~~~~~~p~~~~~  195 (408)
                      |...| .|....|
T Consensus        94 la~sg-~p~lq~F  105 (115)
T TIGR02508        94 LAASG-DPRLQTF  105 (115)
T ss_pred             HHhCC-CHHHHHH
Confidence            88877 4444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=87.49  E-value=17  Score=30.86  Aligned_cols=183  Identities=13%  Similarity=0.092  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      ...|+.-+. -.+.|++++|.+.|+.+....  -+-...+--.++.++.+.+++++|....++...........-|..-|
T Consensus        35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            344544444 345688999999999888653  11123455667777888899999999998887664443444555555


Q ss_pred             HHHHhc-------CCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHH
Q 015370          235 SSCAAT-------LNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF  304 (408)
Q Consensus       235 ~~~~~~-------g~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      .+++..       .|..   .|..-|+++..+  .|-+..              ..+|.. -+..+....-.    .=..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Y--------------a~dA~~-~i~~~~d~LA~----~Em~  172 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRY--------------APDAKA-RIVKLNDALAG----HEMA  172 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcc--------------hhhHHH-HHHHHHHHHHH----HHHH
Confidence            555432       2222   344444444443  121111              111111 11111111000    0014


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +..-|.+.|.+..|..-+++|.+. ..-+.   ..+..+..+|.+.|-.++|...-.-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            566788888888888888888876 22122   2355677888888888888877665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.16  E-value=17  Score=30.61  Aligned_cols=91  Identities=12%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhccc----Cc-cchHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CCChhhH
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQ----RQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNY  337 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~  337 (408)
                      +...-+.+.+...+++|-. .+.+-......    ++ -..|-..|-.+....++..|...++.--..+-   .-+..+.
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~-a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l  231 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAAT-AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL  231 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHH-HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence            4445556666666666655 33222111111    01 11233444455555666666666654322211   1133445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 015370          338 ICILSSYLMLGHLKEVGEIID  358 (408)
Q Consensus       338 ~~li~~~~~~g~~~~A~~~~~  358 (408)
                      ..|+.+|- .|+.+++..++.
T Consensus       232 enLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  232 ENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHhc-cCCHHHHHHHHc
Confidence            55555553 366665555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.15  E-value=25  Score=32.53  Aligned_cols=80  Identities=8%  Similarity=-0.109  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhccCCCChh----hHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSR----NYICILSS--YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE  387 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  387 (408)
                      .+.+-..+-+-+.+.|+.|-..    .-|.|-++  +...|++.++.-.-.-+.+   +.|++.+|.-+.-++....+++
T Consensus       436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~  512 (549)
T PF07079_consen  436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQ  512 (549)
T ss_pred             hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHH
Confidence            3444444545555667665332    23444443  4567888887655443333   5789999988888888899999


Q ss_pred             HHHHHHHHH
Q 015370          388 KANEFHMLL  396 (408)
Q Consensus       388 ~a~~~~~~m  396 (408)
                      +|..++..+
T Consensus       513 eA~~~l~~L  521 (549)
T PF07079_consen  513 EAWEYLQKL  521 (549)
T ss_pred             HHHHHHHhC
Confidence            999988765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=86.99  E-value=9.2  Score=27.40  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=52.1

Q ss_pred             ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015370          102 QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE  181 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~  181 (408)
                      ...++|..+.+++...+  ......--+-+..+.+.|++++|  +..-.....||...|-+|-.  .+.|..+++...+.
T Consensus        20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~   93 (116)
T PF09477_consen   20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT   93 (116)
T ss_dssp             T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence            46789999999998875  22233333444667788999998  33344443588888877754  47788888888888


Q ss_pred             HHHhCC
Q 015370          182 RVKQSN  187 (408)
Q Consensus       182 ~m~~~~  187 (408)
                      ++-..|
T Consensus        94 rla~~g   99 (116)
T PF09477_consen   94 RLASSG   99 (116)
T ss_dssp             HHCT-S
T ss_pred             HHHhCC
Confidence            888776

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.80  E-value=1.2  Score=24.00  Aligned_cols=27  Identities=26%  Similarity=0.254  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +|..+...|...|++++|.+.|++.++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555566666666666655554

...

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.69  E-value=7.7  Score=33.78  Aligned_cols=127  Identities=11%  Similarity=0.134  Sum_probs=82.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHh----------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHH
Q 015370          163 LLHLYAGAKWTEKAEELFERVKQ----------SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFT  229 (408)
Q Consensus       163 ll~~~~~~~~~~~A~~~~~~m~~----------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~  229 (408)
                      |.++|.....|+.-....-.+-.          .|.+....+...++..-....+++.+...+-.++...   ..|+.. 
T Consensus        25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-  103 (418)
T KOG4570|consen   25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-  103 (418)
T ss_pred             hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-
Confidence            44556665566543333313222          3445556666777776667788888888887776542   233322 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      -.++++.+. .-++++++.++..=.+ +|+-||..+++.+++.+.+.+++.+|.+++...|.+
T Consensus       104 ~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  104 IHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            223444443 3467788888888777 699999999999999999999999999844443333

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.17  E-value=13  Score=28.51  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=25.4

Q ss_pred             HcCchhhhHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          275 TASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       275 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      ..++.+++.. ++..+.---++ +...++...+  +...|++++|..+|+++.+.+
T Consensus        22 ~~~d~~D~e~-lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQA-MLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHH-HHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence            4556666666 55544332221 1223333222  355666666666666655543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.83  E-value=26  Score=31.50  Aligned_cols=66  Identities=12%  Similarity=-0.044  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHcCchhhhHHHHHHHHHH
Q 015370          225 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD---DWVKYVNLVNIYITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       225 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  292 (408)
                      ....++..+.+.+.+.|.++.|...+..+.+. ....   .+.+...-+......|+.++|.. .+.....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~-~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQ-KLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            34567888889999999999999999998873 2111   34445566788888999999999 7777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.82  E-value=2.3  Score=22.78  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=7.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 015370          198 MMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       198 li~~~~~~g~~~~a~~~~~~m  218 (408)
                      +...+...|++++|.+.|++.
T Consensus         7 lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    7 LGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH
Confidence            333333344444444443333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.64  E-value=0.38  Score=36.99  Aligned_cols=128  Identities=15%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 015370          233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL  312 (408)
Q Consensus       233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  312 (408)
                      ++..+.+.+.++....+++.+... +...+....+.++..|++.++.++..+ ++.       ..+..-...++..|.+.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~-~L~-------~~~~yd~~~~~~~c~~~   83 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLE-FLK-------TSNNYDLDKALRLCEKH   83 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHH-TTT-------SSSSS-CTHHHHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHH-Hcc-------cccccCHHHHHHHHHhc
Confidence            455556666677777777777753 444556667777777777766666666 333       11112233556666666


Q ss_pred             CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      |.++++..++.++....-         .+..+...++++.|.+++.+       .++...|..++..|...+.
T Consensus        84 ~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             TSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred             chHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence            666666666654322111         11112334455555533332       2356677777777766554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.37  E-value=6  Score=32.54  Aligned_cols=75  Identities=13%  Similarity=0.091  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC----CCHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA----KTSETYTALLH  165 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ll~  165 (408)
                      |.+..++.+.+.+...+++...+.-.+..  +.|...-..++..+|-.|++++|..-++-.....    +-..+|..+|.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455667777788888888777766653  4456666777888888888888876555433322    34666777666


Q ss_pred             H
Q 015370          166 L  166 (408)
Q Consensus       166 ~  166 (408)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            4

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.23  E-value=9  Score=31.54  Aligned_cols=76  Identities=12%  Similarity=-0.006  Sum_probs=49.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--VVPDIFTYNLWISS  236 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~  236 (408)
                      .+..++.+.+.+.+.+|+...++-.+.. |-|..+-..++..++-.|+|++|..-++..-...  ..+...+|..+|++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3445666777777888888777766654 4466677777888888888888877666554421  23344566666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.98  E-value=35  Score=32.18  Aligned_cols=181  Identities=12%  Similarity=0.052  Sum_probs=115.0

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 015370          189 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN  268 (408)
Q Consensus       189 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  268 (408)
                      +.|....-+++..+..+..+.-++.+-.+|...|-  +...|..++.+|... ..++-..+++++.+- . -.|.+.-..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~-d-fnDvv~~Re  137 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEY-D-FNDVVIGRE  137 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-c-chhHHHHHH
Confidence            44666777888888888888888888888887653  667788888888877 556677788877772 2 234444555


Q ss_pred             HHHHHHHcCchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChhhHHHHHH
Q 015370          269 LVNIYITASHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILS  342 (408)
Q Consensus       269 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~  342 (408)
                      |+..|-+ ++.+.+.. +|.++..+..+..     ...|.-|+..  -..+.+..+.+...++.. |..--...+.-+-.
T Consensus       138 La~~yEk-ik~sk~a~-~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~  213 (711)
T COG1747         138 LADKYEK-IKKSKAAE-FFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK  213 (711)
T ss_pred             HHHHHHH-hchhhHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            6666655 67777777 6777666544321     1245544431  134566666666655543 22223334555566


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015370          343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF  380 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  380 (408)
                      -|....++++|++++..+.+..  ..|+-.-..++.-+
T Consensus       214 ~Ys~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~l  249 (711)
T COG1747         214 KYSENENWTEAIRILKHILEHD--EKDVWARKEIIENL  249 (711)
T ss_pred             HhccccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHH
Confidence            7778888888888888777654  44655555555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.69  E-value=22  Score=28.82  Aligned_cols=88  Identities=9%  Similarity=0.040  Sum_probs=61.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYN-----EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA  238 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  238 (408)
                      ...+..++++++|+.-++.....-   ....+.     .|.+.....|.+|+|+..++.....+.  .......-.+++.
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill  170 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL  170 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence            466778888888888888766542   222332     345556778888888888888777544  2333445567788


Q ss_pred             hcCCHHHHHHHHHHHhcC
Q 015370          239 ATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       239 ~~g~~~~a~~~~~~~~~~  256 (408)
                      ..|+-++|..-|++....
T Consensus       171 ~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         171 AKGDKQEARAAYEKALES  188 (207)
T ss_pred             HcCchHHHHHHHHHHHHc
Confidence            888888888888888774

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=83.45  E-value=29  Score=30.08  Aligned_cols=138  Identities=10%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             hhcChHHHHHHHhcCCCC---CCCHHHHHHHHHHHHc-CCC-HHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHH
Q 015370          136 KVFGIHSGERYFEGLPLS---AKTSETYTALLHLYAG-AKW-TEKAEELFERVK-QSNLSFNALMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       136 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~ll~~~~~-~~~-~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~  209 (408)
                      ++..+.+|+++|+.....   -.|..+...|++.... .+. ...--++.+-+. ..+-.++..+...++..+++.++|.
T Consensus       140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~  219 (292)
T PF13929_consen  140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN  219 (292)
T ss_pred             hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence            445567888888854432   2577888888877776 222 222222333333 2334678888999999999999999


Q ss_pred             HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HhcCCCCCCCHHHHHHHHHHH
Q 015370          210 KVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDE----MSCDSGGSDDWVKYVNLVNIY  273 (408)
Q Consensus       210 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~~li~~~  273 (408)
                      +-+++++..... +..-|..-|..+|+.....|+..-...+.++    ..+++++..+...-..+-..+
T Consensus       220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            999999888765 5666888999999999999999877777764    122356766666544444433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.88  E-value=27  Score=32.55  Aligned_cols=123  Identities=7%  Similarity=-0.082  Sum_probs=70.1

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCC
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKW  172 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~  172 (408)
                      -|..-...|+...|-+-+.......+-.|+..-  ..-......|+++.+.+.+...... +....+...+++...+.|+
T Consensus       295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence            344444556666555433333333212333332  2233456778888888777666554 4566777788888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      +++|...-+.|+...+. |...........-..|-+|++.-.|++..
T Consensus       373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~  418 (831)
T PRK15180        373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL  418 (831)
T ss_pred             HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence            88888888777766543 33333322222333455666666666554

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=82.32  E-value=24  Score=28.41  Aligned_cols=193  Identities=9%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             CCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 015370          186 SNLSFNALMYNEMMTLYMSV----GQVEKVALVVEEIKRKNVVPDIF----TYNLWISSCAATLNIDQVKKFLDEMSCDS  257 (408)
Q Consensus       186 ~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  257 (408)
                      .|+.+|...++-++..+...    ++.+-+..+=.+....++.++-.    ....-+..|-..||+.+.-.+|-.+..  
T Consensus         2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~--   79 (233)
T PF14669_consen    2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM--   79 (233)
T ss_pred             CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh--
Confidence            46677788888777776543    34455555545555555554432    222233455556666655555544443  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH
Q 015370          258 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY  337 (408)
Q Consensus       258 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  337 (408)
                      |..              +.++++.--..+-..+.+.......+.|.....+-++.-+.+++.+.+-  -+        .=
T Consensus        80 gce--------------~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L--GR--------iG  135 (233)
T PF14669_consen   80 GCE--------------KFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL--GR--------IG  135 (233)
T ss_pred             hcC--------------CHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh--hH--------HH
Confidence            111              1111111100011111111111233445555555555444444333221  11        11


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 015370          338 ICILSSYLMLGHLKEVGEIIDQWKQS--------ATSD-----FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       338 ~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      .+++-.|-+..++.++.++++.|-+.        |...     +--..-|.....+.+.|.+|.|+.+++   +..+..|
T Consensus       136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~  212 (233)
T PF14669_consen  136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIS  212 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeec
Confidence            23555566666677777776666442        2111     112345666777888888888888777   3444444


Q ss_pred             CCC
Q 015370          405 NAS  407 (408)
Q Consensus       405 ~~t  407 (408)
                      ..+
T Consensus       213 t~l  215 (233)
T PF14669_consen  213 TPL  215 (233)
T ss_pred             CCC
Confidence            443

>PRK09687 putative lyase; Provisional

Probab=82.08  E-value=34  Score=29.86  Aligned_cols=136  Identities=10%  Similarity=-0.120  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-chhhhHHHHHHHHHHhcccCccchHHH
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS-HLVNAESSTLVEAEKSITQRQWITYDF  304 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      +..+-...+.++.+.++. .+...+-.+.++    ++..+-...+.++.+.+ +...+.. .+..+.   ..++...-..
T Consensus       141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~-~L~~~L---~D~~~~VR~~  211 (280)
T PRK09687        141 STNVRFAVAFALSVINDE-AAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIRE-AFVAML---QDKNEEIRIE  211 (280)
T ss_pred             CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHH-HHHHHh---cCCChHHHHH
Confidence            444444555566555553 344444444442    23334444444444432 1223333 222222   3334455555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF  380 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  380 (408)
                      .+.++.+.++. .|...+-...+.+   +  .....+.++...|+. +|...+..+.+..   ||..+-...+.+|
T Consensus       212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~  277 (280)
T PRK09687        212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKL  277 (280)
T ss_pred             HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHH
Confidence            66666666664 3443333333322   1  123566667777764 5666666666532   3554444444444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.90  E-value=2.8  Score=24.55  Aligned_cols=24  Identities=25%  Similarity=0.345  Sum_probs=16.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhc
Q 015370          376 LLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       376 li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      |..+|...|+.+.|.+++++.+..
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            556677777777777777766653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=81.73  E-value=73  Score=33.47  Aligned_cols=137  Identities=9%  Similarity=0.015  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          195 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI----SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       195 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      |.-.++.--+.|.+++|+.++        .|+...+.-+.    +.+.....+++|.-.|+..-+          ..-.+
T Consensus       911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl  972 (1265)
T KOG1920|consen  911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKAL  972 (1265)
T ss_pred             cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHH
Confidence            333444444555555555554        34444444333    334455666666666655433          12455


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL  350 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  350 (408)
                      .+|..+|++.+|+. +...+...... -..+-..|+.-+...+++-+|-++..+...   .     ..-.+..|++...+
T Consensus       973 ~a~~~~~dWr~~l~-~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen  973 KAYKECGDWREALS-LAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEW 1042 (1265)
T ss_pred             HHHHHhccHHHHHH-HHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHH
Confidence            66777777777776 44433222111 011113455556666666666666654332   1     12344555566666


Q ss_pred             HHHHHHHHH
Q 015370          351 KEVGEIIDQ  359 (408)
Q Consensus       351 ~~A~~~~~~  359 (408)
                      ++|.++...
T Consensus      1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred             HHHHHHHHh
Confidence            666666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=81.19  E-value=4.8  Score=21.51  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQ  185 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~  185 (408)
                      +|..+...|.+.|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344445555555555555555555443

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=81.00  E-value=7  Score=34.46  Aligned_cols=52  Identities=10%  Similarity=-0.011  Sum_probs=32.1

Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      +.|.+.|.+++|+. .+.......+ .|.+++..-..+|.+...+..|+.=-..
T Consensus       105 N~yFKQgKy~EAID-CYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~  156 (536)
T KOG4648|consen  105 NTYFKQGKYEEAID-CYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEA  156 (536)
T ss_pred             hhhhhccchhHHHH-HhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence            45777777777777 5554433322 2666666667777777777666554443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.70  E-value=64  Score=32.15  Aligned_cols=23  Identities=13%  Similarity=0.222  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHH
Q 015370          266 YVNLVNIYITASHLVNAESSTLVE  289 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~  289 (408)
                      -..|+..|...+++.+|.. ++-.
T Consensus       508 ~e~La~LYl~d~~Y~~Al~-~ylk  530 (846)
T KOG2066|consen  508 LEVLAHLYLYDNKYEKALP-IYLK  530 (846)
T ss_pred             HHHHHHHHHHccChHHHHH-HHHh
Confidence            3458888999999999998 4443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=80.57  E-value=4  Score=21.52  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc
Q 015370           91 LRHILKELRKSQRYKHALEISEWMVTH  117 (408)
Q Consensus        91 ~~~li~~~~~~~~~~~a~~~~~~~~~~  117 (408)
                      +..+..++.+.|++++|.+.|+.+.+.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445667777888888999888888875

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.45  E-value=23  Score=26.81  Aligned_cols=65  Identities=8%  Similarity=-0.090  Sum_probs=34.8

Q ss_pred             ccchHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          298 QWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +..+--.+..++.+..   +..+.+.+++.+.+.. .|+.  ...--|.-++.+.+++++++++.+.+.+.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3344444555555543   3445556666665522 2221  12223455666777777777777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 69/435 (15%), Positives = 141/435 (32%), Gaps = 140/435 (32%)

Query: 37  SGSSQNECLDEETSNSDG-KDDLKSRIFRISLPKRSATNVI------------QRWVSEG 83
           SG +    +  +   S   +  +  +IF ++L   ++   +              W S  
Sbjct: 161 SGKT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 84  NQAT-----VSELRHILKELRKSQRYKHALEI-----SEWMVTHKEFVLSDSDYATRIDL 133
           + ++     +  ++  L+ L KS+ Y++ L +     +        F     + + +I L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAF-----NLSCKI-L 269

Query: 134 MT----KVFGIHSGERYFEGLPLSAKTSETYT-----ALLHLYAGAKWTE-KAEELFERV 183
           +T    +V    S              S T T     +LL      K+ + + ++L   V
Sbjct: 270 LTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREV 322

Query: 184 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 243
             +N                       ++++ E I+       + T++ W       +N 
Sbjct: 323 LTTNP----RR----------------LSIIAESIR-----DGLATWDNW-----KHVNC 352

Query: 244 DQVKKFLDEMSCDSGGSDDWVK-YVNLV----NIYITASHLVNAESSTLVEAEKSITQRQ 298
           D++   + E S +     ++ K +  L     + +I    L     S +           
Sbjct: 353 DKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLI----------- 395

Query: 299 W---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVG 354
           W   I  D ++++   L     +++  K   ++           I S YL +   L+   
Sbjct: 396 WFDVIKSDVMVVV-NKLHKYSLVEKQPKESTIS-----------IPSIYLELKVKLENEY 443

Query: 355 E----IIDQWKQSATSDFDISACNRLLGAF--------SDVGLTEKANEFHMLLL----- 397
                I+D +    T D D      L   F         ++   E+   F M+ L     
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 398 -QK---NCAPTNASG 408
            QK   +    NASG
Sbjct: 504 EQKIRHDSTAWNASG 518

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 158 ETYTALLHLYAGAKWTEKAEELFERVKQ---SNLSFNALMYNEMMTLYMSVGQVEKVALV 214
           +   A             A  L                 MYN +M  +   G  +++  V
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187

Query: 215 VEEIKRKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDD 262
           +  +K   + PD+ +Y   +        +   +++ L++MS +      
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 24/211 (11%), Positives = 69/211 (32%), Gaps = 10/211 (4%)

Query: 158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL-VVE 216
           + Y A++  +A     ++   +   VK + L+ + L Y   +       Q        +E
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225

Query: 217 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 276
           ++ ++ +        + +S       +  V K     S              L ++Y   
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285

Query: 277 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 336
             +   +    ++  + + ++Q         L+  L ++  +  + K    +K+   +R 
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEKQ---------LHMELASRVCVVSVEKPTLPSKEVKHARK 336

Query: 337 YICILSSYLMLGHLKEVGEIIDQWKQSATSD 367
            +  L         + + E  ++ ++     
Sbjct: 337 TLKTLRDQWEKALCRALRETKNRLEREVYEG 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.98
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.54
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.36
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.25
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.13
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.11
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.02
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.99
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.99
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.98
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.95
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.95
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.92
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.87
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.65
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.51
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.47
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.47
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.45
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.45
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.43
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.38
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.18
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.18
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.11
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.1
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.89
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.86
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.83
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.82
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.8
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.76
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.66
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.6
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.58
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.98
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.96
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.86
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.82
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.38
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.22
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.07
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.88
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.86
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.75
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.49
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.18
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.78
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.6
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.22
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.07
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.9
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.67
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.59
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.29
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.64
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.01
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.6
2p58_C	116	Putative type III secretion protein YSCG; type III	90.34
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.85
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.15
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.16
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.53
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	86.19
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	84.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	84.03
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.53
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.63

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.1e-33  Score=260.23  Aligned_cols=204  Identities=12%  Similarity=0.077  Sum_probs=176.0

Q ss_pred             HHHHHHhcCCCCC--C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------HH
Q 015370          142 SGERYFEGLPLSA--K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ---------VE  209 (408)
Q Consensus       142 ~a~~~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~  209 (408)
                      .+..+.+++...+  . ....++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            3444555555442  2 2456888899999999999999999999999999999999999999987654         78


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE  289 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  289 (408)
                      +|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.+ ++++
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~  165 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYE-VDAH  165 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHH-HHHH
Confidence            8999999999999999999999999999999999999999999999 4999999999999999999999999999 9999


Q ss_pred             HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 015370          290 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML  347 (408)
Q Consensus       290 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  347 (408)
                      |.+.+..||..||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.8e-33  Score=259.78  Aligned_cols=207  Identities=12%  Similarity=0.148  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 015370          174 EKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN---------I  243 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~  243 (408)
                      ..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4456667778877766544 46899999999999999999999999999999999999999999987664         6


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK  323 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  323 (408)
                      +.|.++|++|... |+.||..+|++||.+|++.|++++|.+ ++++|.+.+..||..+|+.||.+|++.|++++|.++|+
T Consensus        87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A           87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFD-MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence            8899999999994 999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370          324 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV  383 (408)
Q Consensus       324 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  383 (408)
                      +|.+.|+.||..||++||.+|++.|++++|.+++++|.+.+ ..|+..||+.++..|+..
T Consensus       165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999997 689999999999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.4e-29  Score=244.60  Aligned_cols=325  Identities=10%  Similarity=0.008  Sum_probs=275.9

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      ...+.|..+++++..  ..|+..++..++.+|.+.|++++|+++|+.+..   .+++..+++.++.+|.+.|++++|.++
T Consensus        98 g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~  172 (597)
T 2xpi_A           98 QQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNL  172 (597)
T ss_dssp             TCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHH
Confidence            455678888888884  457888999999999999999999999998865   367899999999999999999999999


Q ss_pred             HhcCCCCC-----------------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---------------------
Q 015370          147 FEGLPLSA-----------------KTSETYTALLHLYAGAKWTEKAEELFERVKQSNL---------------------  188 (408)
Q Consensus       147 ~~~~~~~~-----------------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---------------------  188 (408)
                      |+++....                 .+..+|+.++.+|.+.|++++|.++|++|.+.+.                     
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~  252 (597)
T 2xpi_A          173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW  252 (597)
T ss_dssp             HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHH
T ss_pred             HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHH
Confidence            99644321                 2588999999999999999999999999875431                     


Q ss_pred             -------------------------------------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          189 -------------------------------------------------SFNALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       189 -------------------------------------------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                                                                       +++..+|+.++.+|.+.|++++|..+|+++.
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  332 (597)
T 2xpi_A          253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL  332 (597)
T ss_dssp             HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                                                             2567778888888888888888888888888


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc
Q 015370          220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW  299 (408)
Q Consensus       220 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  299 (408)
                      +.+.. +..++..++.++.+.|++++|.++++++.+  ..+.+..+++.++..|.+.|++++|.+ +++++.+.. +.+.
T Consensus       333 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~-~~~~  407 (597)
T 2xpi_A          333 EIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARR-YFSKSSTMD-PQFG  407 (597)
T ss_dssp             HHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-TTCH
T ss_pred             HcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhC-CCCH
Confidence            76533 667788888888888888888888888876  346678889999999999999999999 888887754 3367


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA  379 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  379 (408)
                      .+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+..  +.+..+|+.++.+
T Consensus       408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~  484 (597)
T 2xpi_A          408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVV  484 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence            8999999999999999999999999987653 377889999999999999999999999999865  4578899999999


Q ss_pred             HHhcCChHHHHHHHHHHHhc----CCCCC
Q 015370          380 FSDVGLTEKANEFHMLLLQK----NCAPT  404 (408)
Q Consensus       380 ~~~~g~~~~a~~~~~~m~~~----g~~p~  404 (408)
                      |.+.|++++|.++|+++.+.    +..|+
T Consensus       485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~  513 (597)
T 2xpi_A          485 AFNKSDMQTAINHFQNALLLVKKTQSNEK  513 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence            99999999999999999876    66665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.6e-29  Score=244.17  Aligned_cols=304  Identities=8%  Similarity=-0.016  Sum_probs=187.9

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHH------------------------------------
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT------------------------------------  129 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------------------------  129 (408)
                      .+..+|+.++.+|.+.|++++|+++|+++.+.+  +.+...+..                                    
T Consensus       198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  275 (597)
T 2xpi_A          198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY  275 (597)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence            357899999999999999999999999998864  222333222                                    


Q ss_pred             --HHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-------------------
Q 015370          130 --RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL-------------------  188 (408)
Q Consensus       130 --li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------------------  188 (408)
                        ++..|.+.|++++|.++|+++...+++..+|+.++.+|.+.|++++|.++|+++.+.+.                   
T Consensus       276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  355 (597)
T 2xpi_A          276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK  355 (597)
T ss_dssp             HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence              24455677888888888888877667888888888888888888888888888876541                   


Q ss_pred             --------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          189 --------------SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       189 --------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                                    +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.
T Consensus       356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  434 (597)
T 2xpi_A          356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAA  434 (597)
T ss_dssp             HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                          22344555555555555555555555555544321 134455555555555555555555555555


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----cC
Q 015370          255 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQ  330 (408)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~  330 (408)
                      +.  .+.+..+|..++.+|.+.|++++|.+ ++..+.+..+. +..+|+.++..|.+.|++++|.++|+++.+.    +.
T Consensus       435 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  510 (597)
T 2xpi_A          435 RL--FQGTHLPYLFLGMQHMQLGNILLANE-YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS  510 (597)
T ss_dssp             HT--TTTCSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             Hh--CccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence            42  23344555555555555555555555 55555443322 4455555566666666666666666555544    33


Q ss_pred             CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          331 KMT--SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       331 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .|+  ..+|..++.+|.+.|++++|.++|+++.+.+  +.+..+|..+..+|.+.|++++|.++|+++.+
T Consensus       511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            444  4455556666666666666666666655543  23555566666666666666666666666555

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=6.8e-25  Score=200.43  Aligned_cols=325  Identities=10%  Similarity=-0.015  Sum_probs=278.8

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      ...+.+...++...+. .+.+..+|..+...+.+.|++++|++.|+++.+..  +.+...|..+..++.+.|++++|.+.
T Consensus        47 ~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~  123 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQA  123 (388)
T ss_dssp             TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4445666666655554 56688899999999999999999999999998863  44567899999999999999999999


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                      |+++....| +...+..+...+...|++++|.+.|+++.... +.+..+|..+...+.+.|++++|...|+++.+.+.. 
T Consensus       124 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-  201 (388)
T 1w3b_A          124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-  201 (388)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence            998776655 46778888999999999999999999998864 446789999999999999999999999999986433 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL  305 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  305 (408)
                      +...+..+...+...|++++|...+++....  .+.+..++..+...|.+.|++++|.. .+.++....+. +..+|..+
T Consensus       202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l  277 (388)
T 1w3b_A          202 FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPH-FPDAYCNL  277 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSS-CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC-CHHHHHHH
Confidence            5778888999999999999999999998873  34568889999999999999999999 88888776543 56789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      ...+.+.|++++|.+.|+++.+.. ..+..++..+...+.+.|++++|...++++.+..  +.+..+|..+..++.+.|+
T Consensus       278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~  354 (388)
T 1w3b_A          278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCC
Confidence            999999999999999999998874 3477789999999999999999999999998753  4578899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCC
Q 015370          386 TEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       386 ~~~a~~~~~~m~~~g~~p~~  405 (408)
                      +++|.+.|+++.+  +.|+.
T Consensus       355 ~~~A~~~~~~a~~--~~p~~  372 (388)
T 1w3b_A          355 LQEALMHYKEAIR--ISPTF  372 (388)
T ss_dssp             CHHHHHHHHHHHT--TCTTC
T ss_pred             HHHHHHHHHHHHh--hCCCC
Confidence            9999999999987  56653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=2.5e-24  Score=196.66  Aligned_cols=324  Identities=12%  Similarity=0.039  Sum_probs=281.0

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .+.+.|.+.++.+.+. .+.+...+..+...+...|++++|...++...+..  +.+...|..+..++.+.|++++|...
T Consensus        13 g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~   89 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            5566788888877765 34566778888888999999999999999998864  66788999999999999999999999


Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                      |+++....| +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++..... .
T Consensus        90 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~  167 (388)
T 1w3b_A           90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N  167 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence            998876544 57789999999999999999999999999875 34566788899999999999999999999998643 2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL  305 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  305 (408)
                      +..+|..+...+...|++++|...|+++.+.  .+.+...|..+...+...|++++|.. .+.+.....+. +..++..+
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~l  243 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSPN-HAVVHGNL  243 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCTT-CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCcC-CHHHHHHH
Confidence            5788999999999999999999999999883  35567889999999999999999999 88887766443 67889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      ...|...|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++|...|+++.+..  +.+..+|..+...+.+.|+
T Consensus       244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~  320 (388)
T 1w3b_A          244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999886432 56688999999999999999999999999864  5688999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCC
Q 015370          386 TEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       386 ~~~a~~~~~~m~~~g~~p~  404 (408)
                      +++|...++++.+  ..|+
T Consensus       321 ~~~A~~~~~~al~--~~p~  337 (388)
T 1w3b_A          321 IEEAVRLYRKALE--VFPE  337 (388)
T ss_dssp             HHHHHHHHHHHTT--SCTT
T ss_pred             HHHHHHHHHHHHh--cCCC
Confidence            9999999999987  4454

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1.4e-23  Score=195.36  Aligned_cols=308  Identities=13%  Similarity=0.004  Sum_probs=263.3

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTA  162 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~  162 (408)
                      .+.+...+..+...+.+.|++++|+++|+.+.+..  +.+...+..+..++...|++++|...|+++.... .+..++..
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            34567889999999999999999999999999864  5678899999999999999999999999987654 46889999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015370          163 LLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMT------------LYMSVGQVEKVALVVEEIKRKNVVPDI  227 (408)
Q Consensus       163 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~p~~  227 (408)
                      +..+|.+.|++++|.+.|+++.+.+ +.+.   .++..+..            .+...|++++|...|+++.+... .+.
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~  177 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDA  177 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence            9999999999999999999999875 3344   66666644            48899999999999999987643 377


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH--
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL--  305 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--  305 (408)
                      .++..+..+|.+.|++++|.++|+++.+.  .+.+..++..+...|.+.|++++|.. .+..+....+. +...+..+  
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~-~~~~~~~~~~  253 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLS-EVRECLKLDQD-HKRCFAHYKQ  253 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-hHHHHHHHHH
Confidence            88999999999999999999999999873  35678899999999999999999999 89888765433 44455444  


Q ss_pred             ----------HHHHHhcCCHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCH
Q 015370          306 ----------IILYAGLGNKDKIDQIWKSLRMTKQKMT-----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI  370 (408)
Q Consensus       306 ----------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  370 (408)
                                ...+...|++++|.+.|+++.+.  .|+     ...|..+...+.+.|++++|...++++.+..  +.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~  329 (450)
T 2y4t_A          254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccH
Confidence                      78899999999999999999875  344     3467888999999999999999999998864  4578


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          371 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       371 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      ..|..+..+|...|++++|...++++.+  +.|+.
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~  362 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND  362 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence            8999999999999999999999999988  55653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.2e-21  Score=178.06  Aligned_cols=326  Identities=11%  Similarity=0.010  Sum_probs=266.6

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      ..+.+.|...++.+.+. .+.+...+..+...+...|++++|++.|+++.+.+  +.+...+..+..++.+.|++++|.+
T Consensus        39 ~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~  115 (450)
T 2y4t_A           39 AGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAED  115 (450)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            35667889999988876 45578899999999999999999999999999875  5568899999999999999999999


Q ss_pred             HHhcCCCCCCC-H---HHHHHHH------------HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 015370          146 YFEGLPLSAKT-S---ETYTALL------------HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       146 ~~~~~~~~~~~-~---~~~~~ll------------~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  209 (408)
                      .|+++....|+ .   ..+..+.            ..+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  194 (450)
T 2y4t_A          116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPR  194 (450)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence            99998877665 3   5666664            44899999999999999999865 557889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH------------HHHHHHcC
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL------------VNIYITAS  277 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~  277 (408)
                      +|...|+++.+... .+..++..+...+...|++++|...|+++.+.  .+.+...+..+            ...+.+.|
T Consensus       195 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (450)
T 2y4t_A          195 KAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDG  271 (450)
T ss_dssp             GGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999987633 36889999999999999999999999999873  34455555555            88999999


Q ss_pred             chhhhHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 015370          278 HLVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG  354 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  354 (408)
                      ++++|.. .+..+....+...   ...|..+...+.+.|++++|.+.++++.+.. ..+...|..+..+|...|++++|.
T Consensus       272 ~~~~A~~-~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~  349 (450)
T 2y4t_A          272 RYTDATS-KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAI  349 (450)
T ss_dssp             CHHHHHH-HHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999 8988887543311   3478889999999999999999999988764 226788999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHH------------HHhcC-----ChHHHHHHHHHH-HhcCCCCC
Q 015370          355 EIIDQWKQSATSDFDISACNRLLGA------------FSDVG-----LTEKANEFHMLL-LQKNCAPT  404 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~a~~~~~~m-~~~g~~p~  404 (408)
                      ..+++..+..  +-+...+..+..+            |...|     +.+++.+.++++ .+  ..||
T Consensus       350 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd  413 (450)
T 2y4t_A          350 QDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPD  413 (450)
T ss_dssp             HHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGG
T ss_pred             HHHHHHHHhC--cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCC
Confidence            9999998853  3356666666533            33344     566777777763 33  4454

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=1.7e-20  Score=168.73  Aligned_cols=306  Identities=13%  Similarity=-0.018  Sum_probs=254.5

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~  165 (408)
                      ++..+..+...+...|++++|++.|+++.+..  +.+...+..+...+...|++++|...|++.....| +...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            45677888899999999999999999999864  55688999999999999999999999998776544 6889999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLS---FNALMYNEM------------MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY  230 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  230 (408)
                      .+...|++++|...|++..+.. +   .+...+..+            ...+...|++++|...++++.+... .+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence            9999999999999999999874 2   345555555            5788899999999999999987643 367888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH-------
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD-------  303 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------  303 (408)
                      ..+...+...|++++|...++++.+.  .+.+...+..+...|...|++++|.. .+....+..+. +...+.       
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~~~~~~~  233 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLS-EVRECLKLDQD-HKRCFAHYKQVKK  233 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCcc-chHHHHHHHHHHH
Confidence            89999999999999999999999883  46678889999999999999999999 88888765443 333333       


Q ss_pred             -----HHHHHHHhcCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHH
Q 015370          304 -----FLIILYAGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN  374 (408)
Q Consensus       304 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  374 (408)
                           .+...+.+.|++++|...+++..+.... +.    ..+..+...+.+.|++++|...+++..+..  +.+...|.
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  310 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALK  310 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHH
Confidence                 2366688999999999999998876432 22    224457788999999999999999999864  45788999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          375 RLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       375 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      .+...+...|++++|.+.|+++.+  +.|+.
T Consensus       311 ~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~  339 (359)
T 3ieg_A          311 DRAEAYLIEEMYDEAIQDYEAAQE--HNEND  339 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT--TCTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence            999999999999999999999988  45653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.1e-20  Score=176.88  Aligned_cols=321  Identities=9%  Similarity=-0.072  Sum_probs=185.7

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      ...+.|...++++.+..  |+...|..+..++.+.|++++|++.++.+.+..  +.+...+..+..++.+.|++++|...
T Consensus        20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45667788888887765  678888888888888888888888888888764  45567888888888888888888887


Q ss_pred             HhcCCCCCC-----------------------------------------------------------------------
Q 015370          147 FEGLPLSAK-----------------------------------------------------------------------  155 (408)
Q Consensus       147 ~~~~~~~~~-----------------------------------------------------------------------  155 (408)
                      |+++....|                                                                       
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (514)
T 2gw1_A           96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL  175 (514)
T ss_dssp             HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence            776532211                                                                       


Q ss_pred             ---------CHHHHHHHHHHHHc---CCCHHHHHHHHHHHHh-----CCC--------CCChhhHHHHHHHHHhcCCHHH
Q 015370          156 ---------TSETYTALLHLYAG---AKWTEKAEELFERVKQ-----SNL--------SFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       156 ---------~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~~~--------~p~~~~~~~li~~~~~~g~~~~  210 (408)
                               +...+..+...+..   .|++++|...|+++.+     ..-        +.+..++..+...+...|++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (514)
T 2gw1_A          176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG  255 (514)
T ss_dssp             CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence                     02223333333332   6777777777777666     210        1234566666667777777777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 015370          211 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA  290 (408)
Q Consensus       211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  290 (408)
                      |...|+++......  ..++..+...+...|++++|...++++.+.  .+.+...+..+...|...|++++|.. .+...
T Consensus       256 A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~  330 (514)
T 2gw1_A          256 AHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGK-DFDKA  330 (514)
T ss_dssp             HHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHH-HHHHH
T ss_pred             HHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence            77777776654322  555666666666666666666666666552  23344555566666666666666666 55555


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-
Q 015370          291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD-  369 (408)
Q Consensus       291 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-  369 (408)
                      ....+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.....++ 
T Consensus       331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  408 (514)
T 2gw1_A          331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI  408 (514)
T ss_dssp             HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred             HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence            443322 344455555555555555555555555444321 12334444444445555555555555444432211111 


Q ss_pred             ---HHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 015370          370 ---ISACNRLLGAFSD---VGLTEKANEFHMLLLQ  398 (408)
Q Consensus       370 ---~~~~~~li~~~~~---~g~~~~a~~~~~~m~~  398 (408)
                         ...|..+...+..   .|++++|...++++.+
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence               2244444444444   4555555554444443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=6.1e-20  Score=163.28  Aligned_cols=294  Identities=9%  Similarity=-0.013  Sum_probs=248.8

Q ss_pred             CCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHH
Q 015370           84 NQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTA  162 (408)
Q Consensus        84 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~  162 (408)
                      .+.+...+..+...+...|++++|+++|+++.+..  +.+...+..++..+...|++++|..+++++.... .+...|..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            45667788889999999999999999999999875  5566777788899999999999999999877654 46889999


Q ss_pred             HHHHHHcCC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          163 LLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       163 ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                      +...+...| ++++|.+.|++..... +.+..+|..+...+...|++++|...+++..+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 9999999999999875 456789999999999999999999999999886433 4566777899999999


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc--------cCccchHHHHHHHHHhcC
Q 015370          242 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT--------QRQWITYDFLIILYAGLG  313 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~~  313 (408)
                      ++++|...++++.+.  .+.+...+..+...+.+.|++++|.. .+........        +....+|..+...+...|
T Consensus       174 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          174 NSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEK-WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHH-HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            999999999999983  46678889999999999999999999 8888876542        334678999999999999


Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCChH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF-SDVGLTE  387 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~  387 (408)
                      ++++|...+++..+.... +...+..+...+.+.|++++|...+++..+..  +.+...+..+..++ ...|+.+
T Consensus       251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCchh
Confidence            999999999998876532 56778889999999999999999999988753  44777888888888 4556544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.5e-20  Score=173.01  Aligned_cols=322  Identities=8%  Similarity=-0.056  Sum_probs=267.5

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC----------------------
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS----------------------  123 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------  123 (408)
                      ....+.|...+++..+.+ +.+...+..+..++.+.|++++|+..|+++.+.+  +++                      
T Consensus        52 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  128 (514)
T 2gw1_A           52 VGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKE  128 (514)
T ss_dssp             HTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHH
Confidence            356678889999888764 5567899999999999999999999999998764  211                      


Q ss_pred             ---------------------------------------------------------hHHHHHHHHHHHh---hcChHHH
Q 015370          124 ---------------------------------------------------------DSDYATRIDLMTK---VFGIHSG  143 (408)
Q Consensus       124 ---------------------------------------------------------~~~~~~li~~~~~---~g~~~~a  143 (408)
                                                                               ...+......+..   .|++++|
T Consensus       129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  208 (514)
T 2gw1_A          129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA  208 (514)
T ss_dssp             C---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred             HHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHH
Confidence                                                                     2222222333333   7899999


Q ss_pred             HHHHhcCCC-----C----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 015370          144 ERYFEGLPL-----S----------AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV  208 (408)
Q Consensus       144 ~~~~~~~~~-----~----------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  208 (408)
                      ..+|+++..     .          +.+..++..+...+...|++++|...|+++.+.+  |+..+|..+...+...|++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~  286 (514)
T 2gw1_A          209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDS  286 (514)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCH
Confidence            999988655     2          1246788899999999999999999999999875  3488999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHH
Q 015370          209 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV  288 (408)
Q Consensus       209 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  288 (408)
                      ++|...++++..... .+..++..+...+...|++++|...++++.+.  .+.+...+..+...|.+.|++++|.. .+.
T Consensus       287 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~  362 (514)
T 2gw1_A          287 TEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCET-LFS  362 (514)
T ss_dssp             TTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHH-HHH
T ss_pred             HHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence            999999999988643 36678889999999999999999999999873  34567789999999999999999999 888


Q ss_pred             HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-C----hhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 015370          289 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-T----SRNYICILSSYLM---LGHLKEVGEIIDQW  360 (408)
Q Consensus       289 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~---~g~~~~A~~~~~~~  360 (408)
                      .+.+..+. +...|..+...+...|++++|...++++....... +    ...+..+...+..   .|++++|...+++.
T Consensus       363 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          363 EAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            88776433 67788999999999999999999999987754321 1    2378889999999   99999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          361 KQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+..  +.+...|..+...|.+.|++++|...+++..+.
T Consensus       442 ~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          442 SKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            9864  457788999999999999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=8.4e-19  Score=166.85  Aligned_cols=322  Identities=8%  Similarity=-0.062  Sum_probs=249.3

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      ..+.+.|...+++..+.. +.+...+..+..++.+.|++++|++.|+++.+..  +.+...+..+..++...|++++|..
T Consensus        38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~  114 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMF  114 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            457788999999888764 5578889999999999999999999999998875  5567888888999999999988887


Q ss_pred             HHhcCC--------------------------------------------------------------------------
Q 015370          146 YFEGLP--------------------------------------------------------------------------  151 (408)
Q Consensus       146 ~~~~~~--------------------------------------------------------------------------  151 (408)
                      .|+.+.                                                                          
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (537)
T 3fp2_A          115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA  194 (537)
T ss_dssp             HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence            764331                                                                          


Q ss_pred             -----------------------------------CCCCC--------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 015370          152 -----------------------------------LSAKT--------SETYTALLHLYAGAKWTEKAEELFERVKQSNL  188 (408)
Q Consensus       152 -----------------------------------~~~~~--------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~  188 (408)
                                                         ...|+        ..++..+...+...|++++|...|++..+.. 
T Consensus       195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-  273 (537)
T 3fp2_A          195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH-  273 (537)
T ss_dssp             HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence                                               11111        2245556677777888888888888888764 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 015370          189 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN  268 (408)
Q Consensus       189 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  268 (408)
                       |+..+|..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.  .+.+...+..
T Consensus       274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~  349 (537)
T 3fp2_A          274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQ  349 (537)
T ss_dssp             -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHH
T ss_pred             -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence             5577888888888888888888888888877543 25677888888888889999999998888773  2445677888


Q ss_pred             HHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-----hhHHHHHHH
Q 015370          269 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-----RNYICILSS  343 (408)
Q Consensus       269 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~  343 (408)
                      +...|.+.|++++|.. .+..+....+ .+...|..+...+...|++++|.+.|++..+.......     ..+......
T Consensus       350 la~~~~~~g~~~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~  427 (537)
T 3fp2_A          350 LACLLYKQGKFTESEA-FFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI  427 (537)
T ss_dssp             HHHHHHHTTCHHHHHH-HHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH-HHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence            8888889999999998 8887776643 35678888888888999999999999887665432111     113344566


Q ss_pred             HHhc----------CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          344 YLML----------GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       344 ~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      +.+.          |++++|...|++..+..  +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            7777          99999999999988864  456788999999999999999999999998874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=4.3e-18  Score=152.96  Aligned_cols=306  Identities=10%  Similarity=-0.032  Sum_probs=251.0

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      ..+.+.|...+++..+. .+.+...+..+...+...|++++|++.|+.+.+..  +.+...+..+..++...|++++|..
T Consensus        16 ~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           16 AGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHH
Confidence            35667888888888876 34568899999999999999999999999999864  4467889999999999999999999


Q ss_pred             HHhcCCCCCC----CHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 015370          146 YFEGLPLSAK----TSETYTAL------------LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       146 ~~~~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  209 (408)
                      .|++.....|    +...+..+            ...+...|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A           93 DFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPR  171 (359)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHH
Confidence            9999877656    45555555            588999999999999999998875 557889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH------------HHHHHHHHcC
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV------------NLVNIYITAS  277 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~  277 (408)
                      +|...++++..... .+..++..+...+...|++++|...+++..+.  .+.+...+.            .+...+.+.|
T Consensus       172 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  248 (359)
T 3ieg_A          172 KAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDG  248 (359)
T ss_dssp             HHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999998643 36788999999999999999999999999873  233444333            3367799999


Q ss_pred             chhhhHHHHHHHHHHhcccCcc---chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 015370          278 HLVNAESSTLVEAEKSITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG  354 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  354 (408)
                      ++++|.. .+..+....+....   ..+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.
T Consensus       249 ~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~  326 (359)
T 3ieg_A          249 RYTDATS-KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAI  326 (359)
T ss_dssp             CHHHHHH-HHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999 88888776544211   2355678889999999999999999887642 26778889999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370          355 EIIDQWKQSATSDFDISACNRLLGAFSD  382 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~li~~~~~  382 (408)
                      ..|++..+..  +.+...+..+..+...
T Consensus       327 ~~~~~a~~~~--p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          327 QDYEAAQEHN--ENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHTTC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCChHHHHHHHHHHHH
Confidence            9999999854  3356666666655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.4e-19  Score=159.40  Aligned_cols=276  Identities=9%  Similarity=-0.092  Sum_probs=234.8

Q ss_pred             CCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 015370          120 FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM  198 (408)
Q Consensus       120 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  198 (408)
                      .+.+...+..+...+...|++++|.++|+++.... .+...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            45667788888999999999999999999976653 456777788899999999999999999999865 4578899999


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 015370          199 MTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS  277 (408)
Q Consensus       199 i~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  277 (408)
                      ...+...| ++++|...|++....... +...+..+...+...|++++|...++++.+.  .+.+...+..+...|...|
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHh
Confidence            99999999 999999999999986533 5678889999999999999999999999873  3445677788999999999


Q ss_pred             chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC--------CCChhhHHHHHHHHHhcCC
Q 015370          278 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ--------KMTSRNYICILSSYLMLGH  349 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------~p~~~~~~~li~~~~~~g~  349 (408)
                      ++++|.. .+.......+. +...+..+...+...|++++|...+++..+...        ......+..+...+...|+
T Consensus       174 ~~~~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          174 NSKLAER-FFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             CHHHHHH-HHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999 88888776543 678899999999999999999999998876532        2235678889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          350 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       350 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      +++|...+++..+..  +.+...|..+..++.+.|++++|.+.+++..+  +.|+.
T Consensus       252 ~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~  303 (330)
T 3hym_B          252 YAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDD  303 (330)
T ss_dssp             HHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred             HHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence            999999999999865  44778899999999999999999999999887  45543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=4.4e-20  Score=166.98  Aligned_cols=293  Identities=11%  Similarity=-0.044  Sum_probs=225.2

Q ss_pred             HhcccHHHHHH-HHHHHHhccCCCC--ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHH
Q 015370           99 RKSQRYKHALE-ISEWMVTHKEFVL--SDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTE  174 (408)
Q Consensus        99 ~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~  174 (408)
                      ...|++++|++ .|++.....+-.|  +...+..+...+.+.|++++|...|+++.... .+..+|..+..++.+.|+++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence            34578888888 7776654331122  34567788889999999999999999877653 46888999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHh
Q 015370          175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL---------------WISSCAA  239 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~~~~~  239 (408)
                      +|...|+++.+.+ +.+..++..+...|...|++++|...++++....... ...+..               .+..+..
T Consensus       116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            9999999988875 5578899999999999999999999999998764332 222211               2344448


Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370          240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      .|++++|...++++.+.....++..++..+...|.+.|++++|.. .+..+....+ .+..+|..+...+...|++++|.
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-CFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            899999999999998742222268889999999999999999999 8888877643 35778999999999999999999


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------CCHHHHHHHHHHHHhcCChHHHH
Q 015370          320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD---------FDISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       320 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      ..|++..+... .+...+..+...|.+.|++++|...|++..+.....         ....+|..+..+|...|++++|.
T Consensus       272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            99999887642 356788889999999999999999999988753111         12688999999999999999999


Q ss_pred             HHHHHH
Q 015370          391 EFHMLL  396 (408)
Q Consensus       391 ~~~~~m  396 (408)
                      .++++.
T Consensus       351 ~~~~~~  356 (368)
T 1fch_A          351 AADARD  356 (368)
T ss_dssp             HHHTTC
T ss_pred             HhHHHH
Confidence            887643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=9.5e-20  Score=164.78  Aligned_cols=267  Identities=12%  Similarity=-0.014  Sum_probs=205.1

Q ss_pred             ChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 015370          123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL  201 (408)
Q Consensus       123 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~  201 (408)
                      +...+..+...+.+.|++++|..+|+++... +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3445777788888888888888888877654 3467888888888888899999999998888764 4467888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPD-----------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      |...|++++|...|+++.+..  |+           ...+..+...+...|++++|..+++++.+.....++..++..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            999999999999998887642  22           22333457788889999999999999887422222688899999


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL  350 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  350 (408)
                      ..|.+.|++++|.. .+.+..+..+. +..+|..+...|...|++++|.+.|++..+.... +...+..+...|.+.|++
T Consensus       221 ~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          221 VLFHLSGEFNRAID-AFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence            99999999999999 88888776443 6778999999999999999999999988876422 467788899999999999


Q ss_pred             HHHHHHHHHHHhhCCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015370          351 KEVGEIIDQWKQSATSD----------FDISACNRLLGAFSDVGLTEKANEFHML  395 (408)
Q Consensus       351 ~~A~~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~  395 (408)
                      ++|...|++..+.....          .+...|..+..++...|+.+.+..+.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999987643110          1357899999999999999988877665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=9.5e-19  Score=158.19  Aligned_cols=267  Identities=9%  Similarity=-0.087  Sum_probs=220.4

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHH
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALL  164 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll  164 (408)
                      .+...+..+...+.+.|++++|++.|+++.+..  +.+...|..+..++...|++++|...|++..... .+..+|..+.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            355668899999999999999999999999874  5678899999999999999999999999877654 4689999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCh----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNA----------LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLW  233 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l  233 (408)
                      .+|...|++++|...|+++.+.. +.+.          ..+..+...+.+.|++++|...|+++.+.... ++..++..+
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            99999999999999999998754 1122          23344588899999999999999999986432 267889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 015370          234 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG  313 (408)
Q Consensus       234 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  313 (408)
                      ...+...|++++|...|+++.+.  .+.+..+|..+..+|.+.|++++|.. .++++....+. +..+|..+...|...|
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVE-AYTRALEIQPG-FIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence            99999999999999999999873  45678899999999999999999999 88888776433 5788999999999999


Q ss_pred             CHHHHHHHHHHHHhccCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKM-----------TSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      ++++|...|++..+.....           +...|..+..++...|+.+.+..+..+
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999987654321           256788899999999999999888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=6.5e-18  Score=160.70  Aligned_cols=303  Identities=10%  Similarity=-0.030  Sum_probs=242.5

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~  165 (408)
                      ....+..+...+.+.|++++|++.|+++.+..  +.++..|..+..++.+.|++++|++.|++..... .+..++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45677889999999999999999999999875  5678899999999999999999999999877654 46889999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCC------------------------------------CCChh----------------
Q 015370          166 LYAGAKWTEKAEELFERVKQSNL------------------------------------SFNAL----------------  193 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~------------------------------------~p~~~----------------  193 (408)
                      ++...|++++|...|+.+....-                                    .|+..                
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            99999999999999964421110                                    01100                


Q ss_pred             --------------hHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHH
Q 015370          194 --------------MYNEMMTLYM--------SVGQVEKVALVVEEIKRKNVVPD------IFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       194 --------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~  245 (408)
                                    ....+...+.        ..|++++|..+|+++.+......      ..++..+...+...|++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                          1111111111        12478999999999987543211      2356667778889999999


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      |...++++.+.   .|+...+..+...|...|++++|.. .+..+....+. +..+|..+...+...|++++|.+.+++.
T Consensus       262 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          262 AQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFK-FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHH-HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999884   3558889999999999999999999 88888776543 6778999999999999999999999998


Q ss_pred             HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          326 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       326 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      .+.... +...+..+...+...|++++|..+++++.+..  +.+...|..+...+...|++++|...++++.+.
T Consensus       337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            886532 56678889999999999999999999999875  456778899999999999999999999998774

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=3.3e-18  Score=154.59  Aligned_cols=266  Identities=10%  Similarity=-0.047  Sum_probs=224.6

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~  165 (408)
                      +...+..+...+.+.|++++|+..|+++.+..  +.+...+..+..++...|++++|...|++..... .+..++..+..
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  140 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV  140 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45678889999999999999999999999874  5678899999999999999999999999876653 47899999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHH
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNE---------------MMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFT  229 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~  229 (408)
                      .+...|++++|.+.|+++.... +.+...+..               .+..+...|++++|...|+++.+..... +..+
T Consensus       141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  219 (368)
T 1fch_A          141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  219 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence            9999999999999999999875 223333321               2444448999999999999998764332 5788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370          230 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY  309 (408)
Q Consensus       230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  309 (408)
                      +..+...+...|++++|...++++.+.  .+.+...+..+...+.+.|++++|.. .+..+....+ .+...+..+...|
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~-~~~~~~~~l~~~~  295 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA-AYRRALELQP-GYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC-CcHHHHHHHHHHH
Confidence            999999999999999999999999873  35578889999999999999999999 8888877643 3678899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhccCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          310 AGLGNKDKIDQIWKSLRMTKQKM----------TSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       310 ~~~~~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      .+.|++++|...|++..+.....          ....|..+..+|...|+.++|..++++
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            99999999999999987764322          156788999999999999999998874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=2.6e-18  Score=152.49  Aligned_cols=278  Identities=9%  Similarity=-0.106  Sum_probs=154.5

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~  165 (408)
                      +...+..+...+...|++++|+.+|+++.+..  +.+...+..+..++...|++++|...|+++.... .+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            44556677778888888888888888887764  4466677777777778888888887777765543 35677777777


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCH
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS--SCAATLNI  243 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~  243 (408)
                      .+...|++++|.+.++++.... +.+...+..+....                      |+......+..  .+...|++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence            7777777777777777777653 22233333321000                      00001111101  13444555


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK  323 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  323 (408)
                      ++|..+++++.+.  .+.+...+..+...|.+.|++++|.. .+..+....+ .+..+|..+...+...|++++|.+.++
T Consensus       155 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~  230 (327)
T 3cv0_A          155 RECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAA-NLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYN  230 (327)
T ss_dssp             HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555442  22344455555555555555555555 4554444322 234455555555555566666666555


Q ss_pred             HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHH
Q 015370          324 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-----------DISACNRLLGAFSDVGLTEKANEF  392 (408)
Q Consensus       324 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~  392 (408)
                      +..+... .+...+..+...+...|++++|...+++..+... ..           +...|..+..++.+.|++++|..+
T Consensus       231 ~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          231 RALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            5544421 1344555555666666666666666666554321 10           245566666666666666666665


Q ss_pred             HHH
Q 015370          393 HML  395 (408)
Q Consensus       393 ~~~  395 (408)
                      +++
T Consensus       309 ~~~  311 (327)
T 3cv0_A          309 YAQ  311 (327)
T ss_dssp             TTC
T ss_pred             HHH
Confidence            543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=5.4e-21  Score=184.12  Aligned_cols=148  Identities=11%  Similarity=0.023  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 015370          124 DSDYATRIDLMTKVFGIHSGERYFEGLPLS-----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM  198 (408)
Q Consensus       124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  198 (408)
                      ..+|+++|++||+.|++++|.++|++|...     .||+.+||+||++||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            468999999999999999999999876532     599999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC------HHHHHHHHH
Q 015370          199 MTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD------WVKYVNLVN  271 (408)
Q Consensus       199 i~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~  271 (408)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|++++.+..+.    .+++..+++..  +..|+      ..+...|.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHHH
Confidence            999999998 578999999999999999999999999776554    45555555543  34433      444556666


Q ss_pred             HHHHcC
Q 015370          272 IYITAS  277 (408)
Q Consensus       272 ~~~~~~  277 (408)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            676655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=3.9e-20  Score=178.26  Aligned_cols=125  Identities=16%  Similarity=0.150  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQ---SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW  233 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  233 (408)
                      ..+||+||++||+.|++++|.++|++|.+   .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            67999999999999999999999988764   589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          234 ISSCAATLNI-DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       234 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      |+++++.|+. ++|.++|++|.++ |+.||..+|++++..+.+.+-++..
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~V  255 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAV  255 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHH
Confidence            9999999985 7899999999995 9999999999999877666444333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=3e-18  Score=152.05  Aligned_cols=234  Identities=9%  Similarity=-0.072  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...+..+...+...|++++|..+|+++.+.. +.+..+|..+...+...|++++|...++++.+... .+..++..+...
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence            4455566667777777777777777776653 34566777777777777777777777777766532 256667777777


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH--------------HH-HHHHcCchhhhHHHHHHHHHHhcccCccch
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL--------------VN-IYITASHLVNAESSTLVEAEKSITQRQWIT  301 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  301 (408)
                      +...|++++|.+.++++.+.  .+.+...+..+              .. .+...|++++|.. .+.++.+..+. +...
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~  174 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT-LLHAALEMNPN-DAQL  174 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHH-HHHHHHHHSTT-CHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH-HHHHHHhhCCC-CHHH
Confidence            77777777777777777663  12222222222              23 4788899999999 88888776544 6788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  381 (408)
                      +..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+..  +.+...|..+...+.
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            99999999999999999999999887642 256788899999999999999999999998864  457888999999999


Q ss_pred             hcCChHHHHHHHHHHHhc
Q 015370          382 DVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       382 ~~g~~~~a~~~~~~m~~~  399 (408)
                      ..|++++|.+.++++.+.
T Consensus       252 ~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh
Confidence            999999999999998874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=1.1e-16  Score=139.64  Aligned_cols=274  Identities=9%  Similarity=0.001  Sum_probs=209.7

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSD--SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW  172 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  172 (408)
                      ++-....|++..|+..++.....   .|+.  .....+..+|...|+++.|+..++..  .+|+..++..+...+...++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCc
Confidence            45566789999999988776543   3443  35566778999999999999877663  35678889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD  251 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  251 (408)
                      .++|++.++++...+..| +...+..+..++...|++++|++.+++      ..+...+..+...+.+.|++++|.+.++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999998876434 566777788999999999999999987      3577888889999999999999999999


Q ss_pred             HHhcCCCCCCCHHH---HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          252 EMSCDSGGSDDWVK---YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       252 ~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ++.+.   .|+...   ....+..+...|++++|.. +++++.+.. +.+...|+.+..++.+.|++++|.+.|++..+.
T Consensus       155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~-~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYY-IFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHH-HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHH-HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99874   244321   1223344555689999999 899888774 447888999999999999999999999998876


Q ss_pred             cCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 015370          329 KQKMTSRNYICILSSYLMLGHLKE-VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE  391 (408)
Q Consensus       329 ~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  391 (408)
                      ... +..++..++..+...|+.++ +.++++++.+..   |+...   +.....+.+.++++..
T Consensus       230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---P~~~~---~~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---RSHPF---IKEYRAKENDFDRLVL  286 (291)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH---HHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CCChH---HHHHHHHHHHHHHHHH
Confidence            432 66778888989999999876 678999988764   33322   2333444444554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=1e-16  Score=139.75  Aligned_cols=253  Identities=11%  Similarity=-0.009  Sum_probs=186.3

Q ss_pred             HHHHhhcChHHHHHHHhcCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 015370          132 DLMTKVFGIHSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE  209 (408)
Q Consensus       132 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  209 (408)
                      .-....|++..|+..++......|+  ......+.++|...|++++|+..++.   . -+|+..++..+...+...|+.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence            3445678888888888877665444  34556677888888888888876644   2 3567778888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHH
Q 015370          210 KVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV  288 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  288 (408)
                      +|.+.++++...+..|+ ...+..+...+...|++++|++.+++       +.+...+..++..|.+.|++++|.. .++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~-~l~  154 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK-ELK  154 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence            88888888887765554 45555666788888888888888876       3567778888888888888888888 888


Q ss_pred             HHHHhcccCccchHHHH----HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          289 EAEKSITQRQWITYDFL----IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       289 ~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      .+.+..  |+.. ...+    +..+...|++++|..+|+++.+.. ..+...++.+..++.+.|++++|...|++..+..
T Consensus       155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            877664  3322 2222    233344588888888888888763 3366678888888888888888888888888764


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCC
Q 015370          365 TSDFDISACNRLLGAFSDVGLTEK-ANEFHMLLLQKNCAPT  404 (408)
Q Consensus       365 ~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~  404 (408)
                        +.+..++..++..+...|+.++ +.++++++.+  +.|+
T Consensus       231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~  267 (291)
T 3mkr_A          231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS  267 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred             --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence              3477778888888888888865 5678888776  4454

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=1.1e-17  Score=149.84  Aligned_cols=278  Identities=10%  Similarity=0.005  Sum_probs=127.9

Q ss_pred             CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHh
Q 015370           69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFE  148 (408)
Q Consensus        69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  148 (408)
                      .+.|.+.++++      +++.+|..+..++.+.|++++|++.|.+       .+|..+|..++..+...|++++|+++++
T Consensus        19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            45566666655      3446899999999999999999999964       2567799999999999999999999888


Q ss_pred             cCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015370          149 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF  228 (408)
Q Consensus       149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  228 (408)
                      ...+..+++.+.+.|+.+|.+.|+++++.++++       .|+..+|+.+...|...|++++|...|..+         .
T Consensus        86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~  149 (449)
T 1b89_A           86 MARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S  149 (449)
T ss_dssp             -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred             HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence            777766778889999999999999999998884       367789999999999999999999999977         3


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL  308 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  308 (408)
                      .|..+..++.+.|++++|.+.++++       .++.+|..++.+|...|+++.|.. ....+.   .  +..-...++..
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~-~~l~L~---~--~ad~l~~lv~~  216 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQM-CGLHIV---V--HADELEELINY  216 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTT---T--CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHH-HHHHHH---h--CHhhHHHHHHH
Confidence            7899999999999999999999987       267899999999999999999987 333321   2  22234468889


Q ss_pred             HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCCC------CHHHHHHHHHHH
Q 015370          309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM--LGHLKEVGEIIDQWKQSATSDF------DISACNRLLGAF  380 (408)
Q Consensus       309 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~li~~~  380 (408)
                      |.+.|.+++|..+++...... +--...|+.+..+|++  -+++.+.++.|..-+  + ++|      +...|..++-.|
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--n-i~k~~~~~~~~~~w~e~~~ly  292 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--N-IPKVLRAAEQAHLWAELVFLY  292 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--C-HHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--c-CcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999765443 2244556667666664  345555555554211  1 222      455688888889


Q ss_pred             HhcCChHHHHHH
Q 015370          381 SDVGLTEKANEF  392 (408)
Q Consensus       381 ~~~g~~~~a~~~  392 (408)
                      ...++++.|...
T Consensus       293 ~~~~e~d~A~~t  304 (449)
T 1b89_A          293 DKYEEYDNAIIT  304 (449)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HhhchHHHHHHH
Confidence            999999988763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.2e-15  Score=127.70  Aligned_cols=226  Identities=9%  Similarity=-0.032  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PD----IFTY  230 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~----~~~~  230 (408)
                      ...|..+...+...|++++|...|++..+..  .+..+|..+...+...|++++|...+++..+....  |+    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567777778888888888888888877766  67778888888888888888888888877653211  12    4677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHH
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA  310 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  310 (408)
                      ..+...+...|++++|...|+++.+.   .|+.       ..+.+.|++++|.. .+..+....+. +...|..+...+.
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~~~~~~~~~  150 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELK-KAEAEAYVNPE-KAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHH-HHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHH-HHHHHHHcCcc-hHHHHHHHHHHHH
Confidence            77777888888888888888887763   2332       34666677888888 77766654332 5567777788888


Q ss_pred             hcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370          311 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      ..|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+..  +.+...|..+..++.+.|++++|.
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHH
Confidence            888888888888877765432 56667778888888888888888888887754  345777778888888888888888


Q ss_pred             HHHHHHHhc
Q 015370          391 EFHMLLLQK  399 (408)
Q Consensus       391 ~~~~~m~~~  399 (408)
                      +.+++..+.
T Consensus       228 ~~~~~a~~~  236 (258)
T 3uq3_A          228 ETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888877663

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=2.8e-17  Score=147.08  Aligned_cols=240  Identities=8%  Similarity=0.038  Sum_probs=106.5

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL  179 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~  179 (408)
                      +.|+.++|.++++++.       ++..|..++.++.+.|++++|++.|.+.    +|...|..++.++...|++++|++.
T Consensus        15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            5678999999999982       2359999999999999999999999653    6778999999999999999999998


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 015370          180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG  259 (408)
Q Consensus       180 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  259 (408)
                      ++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|..+|..+      
T Consensus        84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred             HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            8877764  4568899999999999999999998885       378889999999999999999999999987      


Q ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH
Q 015370          260 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC  339 (408)
Q Consensus       260 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  339 (408)
                          ..|..++.++.+.|++++|.+ .+.++      .++.+|..++.+|...|+++.|......     +...+.....
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVe-a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~  212 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVD-GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE  212 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHH-HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHH-HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence                258899999999999999999 77766      3778999999999999999999665543     2233344557


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370          340 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV  383 (408)
Q Consensus       340 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  383 (408)
                      ++..|.+.|++++|..+++......  +-....|+-|.-+|++-
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987543  45677788777777764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=2.4e-13  Score=127.77  Aligned_cols=274  Identities=8%  Similarity=-0.002  Sum_probs=147.3

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh----hcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc----CCC
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTK----VFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKW  172 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~  172 (408)
                      .+++++|++.|++..+.|    ++..+..+...|..    .+++++|.++|++.... .+...+..|...|..    .++
T Consensus       128 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~  202 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERN  202 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcC
Confidence            344444444444444432    23334444444443    34444454444443322 244444445444444    455


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNID  244 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~  244 (408)
                      .++|.+.|++..+.|   +..++..+...|..    .+++++|...|++..+.|   +...+..+...|..    .++++
T Consensus       203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~  276 (490)
T 2xm6_A          203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL  276 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence            555555555555443   34444445555443    455555555555555432   23344444444444    55666


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc-----CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcC---CHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA-----SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG---NKD  316 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~  316 (408)
                      +|...|++..+. +   +...+..+...|...     +++++|.. .+....+.+   +...+..+...|...|   +.+
T Consensus       277 ~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~  348 (490)
T 2xm6_A          277 KALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAIS-WYTKSAEQG---DATAQANLGAIYFRLGSEEEHK  348 (490)
T ss_dssp             HHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHH-HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence            666666665542 2   334455555555555     56666666 555554442   2345555555555544   566


Q ss_pred             HHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 015370          317 KIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD----VGLTEK  388 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~  388 (408)
                      +|.+.|++..+.|   +...+..+...|..    .+++++|..+|++..+.+    +...+..|...|.+    .+++++
T Consensus       349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~  421 (490)
T 2xm6_A          349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDYVQ  421 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            6666666665543   44556666666666    677777777777776643    35556667777766    677777


Q ss_pred             HHHHHHHHHhcC
Q 015370          389 ANEFHMLLLQKN  400 (408)
Q Consensus       389 a~~~~~~m~~~g  400 (408)
                      |...|++..+.|
T Consensus       422 A~~~~~~A~~~~  433 (490)
T 2xm6_A          422 AWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC
Confidence            777777776655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.71  E-value=2.8e-13  Score=127.33  Aligned_cols=305  Identities=11%  Similarity=0.020  Sum_probs=250.7

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh----hc
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRK----SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTK----VF  138 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g  138 (408)
                      .+.+.|...++...+.|   ++..+..|...|..    .+++++|++.|++..+.|    ++..+..+...|..    .+
T Consensus        57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~  129 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKV  129 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC
Confidence            34456777777777664   56778888888888    899999999999998865    56777778888887    78


Q ss_pred             ChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHH
Q 015370          139 GIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEK  210 (408)
Q Consensus       139 ~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~  210 (408)
                      ++++|.++|++.... .+...+..|...|..    .++.++|.+.|++..+.|   +..++..+...|..    .+++++
T Consensus       130 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          130 DKAESVKWFRLAAEQ-GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence            999999999987653 467888888888887    789999999999999886   78899999999988    899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCchhhh
Q 015370          211 VALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNA  282 (408)
Q Consensus       211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a  282 (408)
                      |...|++..+.|   +..++..+...|..    .+++++|..+|++..+. +   +...+..+...|..    .++.++|
T Consensus       206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A  278 (490)
T 2xm6_A          206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKA  278 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHH
Confidence            999999998875   55677777777776    78999999999998874 3   55677788888888    8999999


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC---CHHHHH
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGL-----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG---HLKEVG  354 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~  354 (408)
                      .. .++...+.+   +...+..|...|...     +++++|...|++..+.|   +...+..+...|...|   +.++|.
T Consensus       279 ~~-~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~  351 (490)
T 2xm6_A          279 LE-WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV  351 (490)
T ss_dssp             HH-HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HH-HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence            99 888776553   445777788888887     89999999999988765   4456677777777756   889999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 015370          355 EIIDQWKQSATSDFDISACNRLLGAFSD----VGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  400 (408)
                      ++|++..+.+    +...+..|...|..    .+++++|...|++..+.|
T Consensus       352 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          352 EWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            9999998754    57778889999988    899999999999988865

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=4.1e-15  Score=123.85  Aligned_cols=200  Identities=17%  Similarity=0.070  Sum_probs=119.9

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 015370          189 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN  268 (408)
Q Consensus       189 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  268 (408)
                      |++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...+++..+.  .+.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            344455555555555555555555555555543221 3445555555555555555555555555542  2334445555


Q ss_pred             HHHHHHHc-----------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhH
Q 015370          269 LVNIYITA-----------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY  337 (408)
Q Consensus       269 li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  337 (408)
                      +...+.+.           |++++|.. .+.+..+..+. +...|..+...+...|++++|+..|++..+..  .+...+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~  154 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALS-VLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR  154 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHH-HHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence            55555555           78888887 77776665443 56677777778888888888888888877766  566777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          338 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       338 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      ..+..+|...|++++|...|++..+..  +.+...+..+...+.+.|++++|.+.+++..
T Consensus       155 ~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          155 SALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            778888888888888888888887754  3466777778888888888888888877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=1.8e-13  Score=130.00  Aligned_cols=324  Identities=7%  Similarity=-0.000  Sum_probs=220.9

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHH-HhhcChHHHHH
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLM-TKVFGIHSGER  145 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~  145 (408)
                      .+.+.|..++++..+. .+-+...|...+..+.+.|++++|..+|++....   .|+...|...+... ...|+.+.|.+
T Consensus        26 ~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~  101 (530)
T 2ooe_A           26 QPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKE  101 (530)
T ss_dssp             SCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHH
Confidence            4556778888887765 4557778889999999999999999999999875   46777777766533 45577766654


Q ss_pred             ----HHhcCC----CCCCCHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH------
Q 015370          146 ----YFEGLP----LSAKTSETYTALLHLYAG---------AKWTEKAEELFERVKQSNLSFNALMYNEMMTLY------  202 (408)
Q Consensus       146 ----~~~~~~----~~~~~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~------  202 (408)
                          +|+...    ...++...|...+....+         .|++++|..+|++.+.....+....|.......      
T Consensus       102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~  181 (530)
T 2ooe_A          102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH  181 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchh
Confidence                665532    223467788888877654         688999999999998831111123333221110      


Q ss_pred             -------HhcCCHHHHH------------------------------------------------------------HHH
Q 015370          203 -------MSVGQVEKVA------------------------------------------------------------LVV  215 (408)
Q Consensus       203 -------~~~g~~~~a~------------------------------------------------------------~~~  215 (408)
                             .+.++++.|.                                                            .+|
T Consensus       182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y  261 (530)
T 2ooe_A          182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY  261 (530)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence                   0112233333                                                            333


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          216 EEIKRKNVVPDIFTYNLWISSCAA-------TLNID-------QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       216 ~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      ++..... +-+...|..+...+.+       .|+++       +|..++++..+. -.+.+...|..++..+.+.|++++
T Consensus       262 ~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~  339 (530)
T 2ooe_A          262 EQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEK  339 (530)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHH
Confidence            3333321 1134455555555554       68876       889999998862 245567889999999999999999


Q ss_pred             hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHH
Q 015370          282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS-SYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~  360 (408)
                      |.. +++++.+..+......|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|++.
T Consensus       340 A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a  417 (530)
T 2ooe_A          340 VHS-IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELG  417 (530)
T ss_dssp             HHH-HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHH-HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            999 888887753321135788888888889999999999998776532 12223322222 233689999999999998


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          361 KQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                      .+..  +.+...|..++..+.+.|+.++|..+|++.+..+
T Consensus       418 l~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          418 LKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            8764  3467889999999999999999999999998753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.7e-14  Score=124.42  Aligned_cols=197  Identities=10%  Similarity=0.016  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALL  164 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll  164 (408)
                      ..+......+...|++++|++.|+...+..  +.+...+..+..++...|++++|+..|++....+++    ..+|..+.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            345556666777777777777777777653  334446666666777777777777776665543222    33466666


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID  244 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  244 (408)
                      ..+...|++++|++.|++..+.. +.+..+|..+...|...|++++|...|++..+... .+...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777666643 33455666666666666666666666666665422 23444444442333344666


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc---hhhhHHHHHHHHHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH---LVNAESSTLVEAEK  292 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~  292 (408)
                      +|.+.|+++.+.  .+.+...+..+...+...|+   .++|.. .+++..+
T Consensus       160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~  207 (272)
T 3u4t_A          160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKP-YYEKLIE  207 (272)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHH-HHHHHHH
T ss_pred             HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHH-HHHHHHH
Confidence            666666666652  23334555555555555555   555555 4444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.4e-14  Score=124.97  Aligned_cols=246  Identities=12%  Similarity=0.017  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTL  201 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~  201 (408)
                      ..+......+...|++++|+..|++.....| +...+..+..++...|++++|++.+++..+.+-.|+  ..+|..+...
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            3444555666777777777777776555433 345667777777777777777777777766321111  2236677777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      +...|++++|...|++..+.... +..++..+...+...|++++|...+++..+.  .+.+...+..+...+...+++++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777664322 4456666777777777777777777776663  34455556666623333447777


Q ss_pred             hHHHHHHHHHHhcccCccchHHHHHHHHHhcCC---HHHHHHHHHHHHhcc-CCCCh------hhHHHHHHHHHhcCCHH
Q 015370          282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTK-QKMTS------RNYICILSSYLMLGHLK  351 (408)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~------~~~~~li~~~~~~g~~~  351 (408)
                      |.. .+..+.+..+. +...+..+...+...|+   +++|...+++..+.. ..|+.      ..|..+...|.+.|+++
T Consensus       161 A~~-~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          161 ADS-SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHH-HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHH-HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            777 66666554332 34555566666666666   666766666655432 11221      34555666666677777


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015370          352 EVGEIIDQWKQSATSDFDISACNRLL  377 (408)
Q Consensus       352 ~A~~~~~~~~~~~~~~~~~~~~~~li  377 (408)
                      +|...+++..+..  +.+...+..+.
T Consensus       239 ~A~~~~~~al~~~--p~~~~a~~~l~  262 (272)
T 3u4t_A          239 KADAAWKNILALD--PTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHC
T ss_pred             HHHHHHHHHHhcC--ccHHHHHHHhh
Confidence            7777777766643  33455444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=9.7e-15  Score=124.63  Aligned_cols=222  Identities=12%  Similarity=0.005  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC----C----HHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----T----SETY  160 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~  160 (408)
                      ..+..+...+...|++++|++.|+...+..   .+...+..+..++...|++++|...|++.....|    +    ..+|
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            445566666666667777777666666542   4555566666666666666666665555433211    1    3445


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT  240 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  240 (408)
                      ..+...+.+.|++++|...|++.....  |+.                                          ..+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------------------~~~~~~  118 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA------------------------------------------DILTKL  118 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH------------------------------------------HHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh------------------------------------------HHHHHH
Confidence            555555555555555555555554432  221                                          223334


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 015370          241 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ  320 (408)
Q Consensus       241 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  320 (408)
                      |++++|...++++...  .+.+...+..+...+...|++++|.. .+.......+. +...|..+...+...|++++|..
T Consensus       119 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  194 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVK-AYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence            4445555555554441  12233444455555555555555555 44444443322 34445555555555555555555


Q ss_pred             HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          321 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       321 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      .+++..+... .+...|..+...+.+.|++++|...+++..+
T Consensus       195 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          195 DCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5555544421 1344455555556666666666666655544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1.1e-14  Score=121.16  Aligned_cols=198  Identities=14%  Similarity=0.024  Sum_probs=119.5

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      ++...+..+...+.+.|++++|...|++..+.. |.+...|..+...+.+.|++++|...|++..+.... +...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            345556666666666666666666666666554 345556666666666666666666666666654322 445555666


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH
Q 015370          235 SSCAAT-----------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       235 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .++...           |++++|...+++..+.  .+.+...+..+...|...|++++|.. .+++..+..  .+...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA-SLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC--CCHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcc--cchHHHH
Confidence            666666           7777777777777662  34456667777777777777777777 677766655  4666777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  360 (408)
                      .+...|...|++++|...|++..+..+. +...+..+...+.+.|++++|...+++.
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            7777777777777777777776665322 4555666777777777777777777654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=6.4e-14  Score=130.93  Aligned_cols=343  Identities=9%  Similarity=-0.073  Sum_probs=225.1

Q ss_pred             HHHhhhcCCCCcHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhcc-----CCCC-ChH
Q 015370           60 SRIFRISLPKRSATNVIQRWVSE--------GNQATVSELRHILKELRKSQRYKHALEISEWMVTHK-----EFVL-SDS  125 (408)
Q Consensus        60 ~~~~~~~~~~~~a~~~l~~~~~~--------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~  125 (408)
                      +.+.......+.|.+.+++-.+.        ..+....+|+.+...|...|++++|...+++..+..     ...+ ...
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            44444445666777766654331        123346789999999999999999999999876531     1112 245


Q ss_pred             HHHHHHHHHHhh--cChHHHHHHHhcCCCCCC-CHHHHHHHHHH---HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 015370          126 DYATRIDLMTKV--FGIHSGERYFEGLPLSAK-TSETYTALLHL---YAGAKWTEKAEELFERVKQSNLSFNALMYNEMM  199 (408)
Q Consensus       126 ~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li  199 (408)
                      ++..+..++...  +++++|+..|++.....| +...+..+..+   +...++.++|++.+++..+.+ +.+..++..+.
T Consensus       138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~  216 (472)
T 4g1t_A          138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHH
Confidence            666666666654  468999999998766544 45666655554   455678889999999988765 44666777776


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 015370          200 TLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT  275 (408)
Q Consensus       200 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  275 (408)
                      ..+..    .|++++|.+.+++...... .+..++..+...+...|++++|...+++..+.  .+.+..++..+...|..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence            66654    4678899999999887643 36778888999999999999999999999873  45567777777776643


Q ss_pred             c-------------------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChh-
Q 015370          276 A-------------------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-  335 (408)
Q Consensus       276 ~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-  335 (408)
                      .                   +..+.|.. .+....... +.+..++..+...|...|++++|++.|++..+....+... 
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~  371 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVA-HLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ  371 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHH-HHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHH-HHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence            2                   23456666 566655543 3367788899999999999999999999988765433221 


Q ss_pred             -hHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 015370          336 -NYICILS-SYLMLGHLKEVGEIIDQWKQSAT----------------------SDFDISACNRLLGAFSDVGLTEKANE  391 (408)
Q Consensus       336 -~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~a~~  391 (408)
                       .+..+.. ...+.|+.++|+..|++..+...                      .+.+..+|..|...|...|++++|.+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence             1222222 34578999999999887654210                      13456788999999999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCC
Q 015370          392 FHMLLLQKN-CAPTNASG  408 (408)
Q Consensus       392 ~~~~m~~~g-~~p~~~ty  408 (408)
                      .|++.++.| ..|+..+|
T Consensus       452 ~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          452 DSERGLESGSLIPSASSW  469 (472)
T ss_dssp             ------------------
T ss_pred             HHHHHHhcCCCCCcHhhc
Confidence            999998864 35665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=2.3e-15  Score=130.01  Aligned_cols=221  Identities=14%  Similarity=0.050  Sum_probs=117.8

Q ss_pred             hcccHHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHH
Q 015370          100 KSQRYKHALEISEWMVTHKEFV--LSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKA  176 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A  176 (408)
                      ..|++++|++.|+.+.+.....  .+...+..+...+...|++++|...|++..... .+..+|..+...+...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            3467777777777777653111  124456666666666677777766666654442 3466666666666666666666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370          177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       177 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      .+.|++..+.. +.+..+|..+...|.+.|++++|...|+++.+..  |+.......+..+...|++++|...+++....
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            66666666543 3345666666666666666666666666666532  33333333334444556666666666555442


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          257 SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRM  327 (408)
Q Consensus       257 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  327 (408)
                        .+++...+. ++..+...++.++|.. .+.......+..   +...|..+...|...|++++|...|++...
T Consensus       174 --~~~~~~~~~-~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          174 --SDKEQWGWN-IVEFYLGNISEQTLME-RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             --SCCCSTHHH-HHHHHTTSSCHHHHHH-HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             --CCcchHHHH-HHHHHHHhcCHHHHHH-HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence              122222222 4444444455555555 444333222110   123444444444444555555554444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.67  E-value=1.4e-13  Score=114.84  Aligned_cols=204  Identities=13%  Similarity=0.025  Sum_probs=143.4

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +...|..+...+...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...++++..... .+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence            45667777777888888888888888777654 34566777777888888888888888887776532 25667777777


Q ss_pred             HHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 015370          236 SCAAT-LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN  314 (408)
Q Consensus       236 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  314 (408)
                      .+... |++++|...++++.+....+.+...+..+...+...|++++|.. .+..+.+..+. +...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA-YLKRSLAAQPQ-FPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence            77788 88888888888777621122335667777777788888888877 77766655432 45667777777777788


Q ss_pred             HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +++|.+.+++..+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            8888887777766543235555666666777777888887777777654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=4.1e-13  Score=115.93  Aligned_cols=224  Identities=13%  Similarity=-0.015  Sum_probs=129.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYN  231 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~  231 (408)
                      +..++..+...+...|++++|.+.|++..+.+   +..++..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            44555555566666666666666666665533   44555556666666    666666666666665543   445555


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCchhhhHHHHHHHHHHhcccCccchHH
Q 015370          232 LWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       232 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .+...|..    .+++++|...|++..+. +   +...+..+...|..    .+++++|.. .+++..+.+   +...+.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~-~~~~a~~~~---~~~a~~  150 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACDLN---DGDGCT  150 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHHTT---CHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHH-HHHHHHhcC---cHHHHH
Confidence            55555655    66666666666666552 2   45555566666666    666666666 555555433   334455


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370          304 FLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNR  375 (408)
Q Consensus       304 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  375 (408)
                      .+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+    +...+..
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~  223 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFN  223 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHH
Confidence            55555555    666666666666655443   33445555556666    666666666666665543    1444555


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhcC
Q 015370          376 LLGAFSD----VGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       376 li~~~~~----~g~~~~a~~~~~~m~~~g  400 (408)
                      +...|.+    .+++++|.+.|++..+.|
T Consensus       224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            6666666    666666666666665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.66  E-value=1.3e-13  Score=117.42  Aligned_cols=202  Identities=10%  Similarity=-0.060  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...|..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.++++.+... .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            5677888888888888888888888887764 44677888888888888888888888888877543 256777888888


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK  315 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  315 (408)
                      +...|++++|.++++++.+ .+..| +...+..+...|.+.|++++|.. .+.+.....+. +...+..+...+...|++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNRN-QPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHcCCH
Confidence            8888888888888888877 23333 55667778888888888888888 77777665433 566777788888888888


Q ss_pred             HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ++|...+++..+... .+...+..+...+...|+.++|.++++++.+..
T Consensus       192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            888888887766532 345566777777888888888888888887754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=3.2e-14  Score=120.33  Aligned_cols=202  Identities=13%  Similarity=0.036  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      ....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence            35556666667777777777777777776653 34566777777777777777777777777766432 25566666777


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK  315 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  315 (408)
                      .+...|++++|.++++++.+.  .+.+...+..+...+.+.|++++|.. .+.++.+..+. +...+..+...+...|++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALP-YLQRAVELNEN-DTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence            777777777777777776662  24456666777777777777777777 66666554332 455666777777777777


Q ss_pred             HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ++|...+++..+... .+...+..+...|...|++++|...+++..+..
T Consensus       176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            777777777665532 245566677777777777777777777777653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=1.1e-14  Score=125.81  Aligned_cols=245  Identities=9%  Similarity=-0.020  Sum_probs=189.7

Q ss_pred             hhcChHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 015370          136 KVFGIHSGERYFEGLPLSA-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       136 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  210 (408)
                      ..|++++|+..|+++....     .+..+|..+...+...|++++|...|+++.+.+ +.+..+|..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            4578899999998877642     247889999999999999999999999999875 4578899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 015370          211 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA  290 (408)
Q Consensus       211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  290 (408)
                      |...|++..+.... +..++..+...+...|++++|...++++.+.   .|+.......+..+...|++++|.. .+...
T Consensus        96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~  170 (275)
T 1xnf_A           96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKE-VLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            99999999986432 5788889999999999999999999999873   2343344445555677799999999 88777


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 015370          291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM---TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD  367 (408)
Q Consensus       291 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  367 (408)
                      ....+. +...+ .++..+...++.++|.+.+.+........   +...+..+...|.+.|++++|...|++..+..  +
T Consensus       171 ~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p  246 (275)
T 1xnf_A          171 FEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V  246 (275)
T ss_dssp             HHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred             HhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence            665433 44444 46777788888999999998876543321   14677889999999999999999999998753  2


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHH
Q 015370          368 FDISACNRLLGAFSDVGLTEKANEFH  393 (408)
Q Consensus       368 ~~~~~~~~li~~~~~~g~~~~a~~~~  393 (408)
                      .+...   ...++...|++++|++.+
T Consensus       247 ~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          247 HNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TTCHH---HHHHHHHHHHHHHC----
T ss_pred             hhHHH---HHHHHHHHHHHHhhHHHH
Confidence            23333   355677888888888766

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=2.7e-12  Score=121.85  Aligned_cols=322  Identities=9%  Similarity=0.070  Sum_probs=226.7

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcccHHHHHH----HHHHHHhccCCCC-ChHHHHHHHHHHHh----
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKEL-RKSQRYKHALE----ISEWMVTHKEFVL-SDSDYATRIDLMTK----  136 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~li~~~~~----  136 (408)
                      .+.+.|..++++.++..  |+...|...+... ...|+.+.|.+    +|+.....-+..| +...|...+....+    
T Consensus        60 ~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~  137 (530)
T 2ooe_A           60 KNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV  137 (530)
T ss_dssp             TCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence            34566777787777653  6777777776533 34567766654    7777765422333 46778887776655    


Q ss_pred             -----hcChHHHHHHHhcCCCCCCC---HHHHHHHHHHH-------------HcCCCHH---------------------
Q 015370          137 -----VFGIHSGERYFEGLPLSAKT---SETYTALLHLY-------------AGAKWTE---------------------  174 (408)
Q Consensus       137 -----~g~~~~a~~~~~~~~~~~~~---~~~~~~ll~~~-------------~~~~~~~---------------------  174 (408)
                           .|+++.|..+|++.... |+   ...|.......             .+.++++                     
T Consensus       138 ~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~  216 (530)
T 2ooe_A          138 GSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP  216 (530)
T ss_dssp             SSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred             ccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence                 78999999999997764 32   23333221100             0111222                     


Q ss_pred             ---------------------------------------HHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCH
Q 015370          175 ---------------------------------------KAEELFERVKQSNLSFNALMYNEMMTLYMS-------VGQV  208 (408)
Q Consensus       175 ---------------------------------------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~  208 (408)
                                                             +|..+|++..... +-+...|..+...+.+       .|++
T Consensus       217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~  295 (530)
T 2ooe_A          217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM  295 (530)
T ss_dssp             CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence                                                   3344555544432 3356677777777765       6887


Q ss_pred             H-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CH-HHHHHHHHHHHHcCch
Q 015370          209 E-------KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DW-VKYVNLVNIYITASHL  279 (408)
Q Consensus       209 ~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~~li~~~~~~~~~  279 (408)
                      +       +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.   .| +. ..|..++..+.+.|+.
T Consensus       296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~  372 (530)
T 2ooe_A          296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGI  372 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCH
Confidence            6       89999999986322335788889999999999999999999999983   34 33 5799999999999999


Q ss_pred             hhhHHHHHHHHHHhcccCccchHHHHHHH-HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          280 VNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIID  358 (408)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  358 (408)
                      ++|.. ++.+..+..+. +...|...... +...|+.++|..+|++..+... -+...|..++..+.+.|+.++|..+|+
T Consensus       373 ~~A~~-~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          373 KSGRM-IFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHH-HHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHH-HHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            99999 88888765332 23333222222 3468999999999998877642 256778889999999999999999999


Q ss_pred             HHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          359 QWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       359 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +....+...|+  ...|...+......|+.+.+..+++++.+
T Consensus       450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99886533333  45888888888899999999999999876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=9.4e-14  Score=115.84  Aligned_cols=199  Identities=12%  Similarity=-0.003  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS  204 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  204 (408)
                      .+..+...+...|++++|.+.|++..... .+...|..+...+...|++++|.+.++++.... +.+..++..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            34444444444444444444444433221 234455555555555555555555555555432 2344555555555555


Q ss_pred             c-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          205 V-GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       205 ~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      . |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.  .+.+...+..+...+.+.|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence            5 556666655555555222222 344555555556666666666666655542  233455556666666666666666


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      .. .+.......+..+...+..+...+...|+.+++..+++.+.+.
T Consensus       167 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          167 DY-YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HH-HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            66 5555555443234445555555566666666666666665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=9.8e-14  Score=118.18  Aligned_cols=200  Identities=8%  Similarity=-0.042  Sum_probs=133.3

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL  166 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~  166 (408)
                      ...+..+...+...|++++|++.|+++.+..  +.+...+..+...+...|++++|.+.|+++.... .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            4566777777888888888888888877753  4456677777777777777777777777655442 356677777777


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  245 (408)
                      +...|++++|.+.|+++...+..| +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777776622223 455666677777777777777777777665432 245666666667777777777


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      |...++++.+.  .+.+...+..+...+.+.|+.++|.+ .++.+.+.
T Consensus       194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAAS-YGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHH-HHHHHHHH
Confidence            77777776652  33455556666666666666666666 56655544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=9.4e-13  Score=122.99  Aligned_cols=304  Identities=10%  Similarity=-0.058  Sum_probs=218.4

Q ss_pred             CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhc----c--CCCC-ChHHHHHHHHHHHhhcChHHHHHHHhcCCCC----
Q 015370           85 QATVSELRHILKELRKSQRYKHALEISEWMVTH----K--EFVL-SDSDYATRIDLMTKVFGIHSGERYFEGLPLS----  153 (408)
Q Consensus        85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----  153 (408)
                      ......|+.+...+...|++++|++.|++..+.    .  ...| ...+|+.+..+|...|++++|...+++....    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            344667999999999999999999999987542    1  0123 3568999999999999999999888764321    


Q ss_pred             ----C-CCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC
Q 015370          154 ----A-KTSETYTALLHLYAG--AKWTEKAEELFERVKQSNLSFNALMYNEMMTLY---MSVGQVEKVALVVEEIKRKNV  223 (408)
Q Consensus       154 ----~-~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~  223 (408)
                          . ....++..+..++.+  .+++++|+..|++..+.. |-++..+..+..++   ...++.++|++.+++..+...
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence                1 235677776666654  457999999999998865 33555666555553   456788899999998887543


Q ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc
Q 015370          224 VPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW  299 (408)
Q Consensus       224 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  299 (408)
                      . +..++..+...+..    .|++++|.+++++....  .+.+..++..+...|.+.|++++|.. .+.+..+..+. +.
T Consensus       207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~-~~  281 (472)
T 4g1t_A          207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIE-LLKKALEYIPN-NA  281 (472)
T ss_dssp             S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CH
T ss_pred             c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHhCCC-hH
Confidence            2 45566655555544    46788999999998773  45677889999999999999999999 88888776544 55


Q ss_pred             chHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGL-------------------GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       300 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  360 (408)
                      .++..+...|...                   +..+.|...+++..+... .+...+..+...|...|++++|+..|++.
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            6666666555322                   335677778877766542 25667888999999999999999999999


Q ss_pred             HhhCCCCCCHH----HHHHHHH-HHHhcCChHHHHHHHHHHHh
Q 015370          361 KQSATSDFDIS----ACNRLLG-AFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       361 ~~~~~~~~~~~----~~~~li~-~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .+..   |+..    .+..+.. .....|++++|+..|++.++
T Consensus       361 L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          361 FSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             HHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            8753   2322    2233332 34568999999999999887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=1.6e-14  Score=122.21  Aligned_cols=201  Identities=11%  Similarity=0.058  Sum_probs=101.5

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHH
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALL  164 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll  164 (408)
                      .....|..+...+...|++++|+..|+++.+..  +.+...+..+...+...|++++|...|++..... .+..++..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            445556666666667777777777777766643  3445566666666666666666666666544332 3455566666


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID  244 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  244 (408)
                      ..+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence            66666666666666666655543 33455555666666666666666666666554322 24445555555555566666


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      +|...++++.+.  .+.+..++..+...|.+.|++++|.. .++.+.+.
T Consensus       177 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~  222 (243)
T 2q7f_A          177 EALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALE-MLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHH-HHHHHHcc
Confidence            666666555542  23344455555555555555555555 55544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=1.7e-13  Score=123.58  Aligned_cols=233  Identities=11%  Similarity=0.045  Sum_probs=188.1

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      +...|+.+...+.+.|++++|++.|++.+... +-+..+|+.+..++...|+ +++|+..|++....... +...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            36778888888999999999999999988875 4467889999999999996 99999999999886543 678888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh-cC
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LG  313 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~  313 (408)
                      .++...|++++|+..|+++.+.  .+.+...|..+..++.+.|++++|+. .+.++.+..+. +...|+.+...+.. .|
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~-~~~~al~l~P~-~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVR-NNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence            8999999999999999998873  45678889999999999999999999 88888776554 77888889888888 56


Q ss_pred             CHHHH-----HHHHHHHHhccCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--
Q 015370          314 NKDKI-----DQIWKSLRMTKQKMTSRNYICILSSYLMLG--HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG--  384 (408)
Q Consensus       314 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--  384 (408)
                      ..++|     ++.+++....... +...|..+...+.+.|  ++++|.+.+.++ +.  .+.+...+..+..+|.+.|  
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~  325 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLEN  325 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcc
Confidence            65777     4778877765322 4556777788888877  688999999887 32  3456778888888888874  


Q ss_pred             -------ChHHHHHHHHHH-Hh
Q 015370          385 -------LTEKANEFHMLL-LQ  398 (408)
Q Consensus       385 -------~~~~a~~~~~~m-~~  398 (408)
                             ..++|.++++++ .+
T Consensus       326 ~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          326 QCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHHHHH
Confidence                   258899999998 55

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=1e-12  Score=113.37  Aligned_cols=222  Identities=12%  Similarity=-0.038  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMMT  200 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~  200 (408)
                      ..+..+...+...|++++|.+.|++... ..+...+..+...|..    .+++++|.+.|++..+.+   +..++..+..
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~   82 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            3344444444444444444444444333 2233444445555555    555555555555555544   4455555555


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370          201 LYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI  272 (408)
Q Consensus       201 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  272 (408)
                      .|..    .+++++|...|++..+.+   +..++..+...|..    .+++++|...|++..+. +   +...+..+...
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~  155 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHH
Confidence            5555    555555555555555543   44455555555555    55555565555555552 2   34445555555


Q ss_pred             HHH----cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370          273 YIT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY  344 (408)
Q Consensus       273 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  344 (408)
                      |..    .+++++|.. .+++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|
T Consensus       156 ~~~~~~~~~~~~~A~~-~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~  228 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALA-SYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  228 (273)
T ss_dssp             HHHTSSSCCCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence            555    556666665 555544432   23445555555555    666666666666555543   134455555566


Q ss_pred             Hh----cCCHHHHHHHHHHHHhhC
Q 015370          345 LM----LGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       345 ~~----~g~~~~A~~~~~~~~~~~  364 (408)
                      ..    .+++++|...|++..+.+
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCcccCHHHHHHHHHHHHHcC
Confidence            65    666666666666666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=8e-14  Score=125.68  Aligned_cols=246  Identities=7%  Similarity=-0.012  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMTLY  202 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  202 (408)
                      ..|..+..++.+.|++++|+..|++..... .+..+|+.+..++.+.|+ +++|+..|++.+..+ +-+..+|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            344555555555566666666665554432 245566666666666664 666666666666654 33556666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-cCchhh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVN  281 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~  281 (408)
                      ...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+.  .+.+...|+.+..++.+ .|..++
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence            6666666666666666664332 4566666666666666777777766666652  34455666666666666 444455


Q ss_pred             h-----HHHHHHHHHHhcccCccchHHHHHHHHHhcC--CHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcC-----
Q 015370          282 A-----ESSTLVEAEKSITQRQWITYDFLIILYAGLG--NKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLG-----  348 (408)
Q Consensus       282 a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g-----  348 (408)
                      |     +. .+.+.....+. +...|+.+...+...|  ++++|.+.+.++ +.  .| +...+..+...|.+.|     
T Consensus       254 A~~~~el~-~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          254 AVLEREVQ-YTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             HHHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhccccc
Confidence            5     24 45555444332 5566777777777666  567777777666 22  33 3455666777777653     


Q ss_pred             ----CHHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHH
Q 015370          349 ----HLKEVGEIIDQW-KQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       349 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~~li~~~~  381 (408)
                          ..++|..+++++ ++..  +.....|..+...+.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence                247788888887 5532  223455655555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=6.6e-14  Score=127.89  Aligned_cols=299  Identities=14%  Similarity=0.002  Sum_probs=225.3

Q ss_pred             CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC----hHHHHHHHHHHHhhcChHHHHHHHhcCCCC-------
Q 015370           85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS----DSDYATRIDLMTKVFGIHSGERYFEGLPLS-------  153 (408)
Q Consensus        85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------  153 (408)
                      ......+......+...|++++|+..|++..+..  +.+    ...+..+...+...|++++|...|++....       
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   83 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ   83 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence            3456667788889999999999999999999864  233    357888889999999999999988865332       


Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC--------------------H
Q 015370          154 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSN-----LSFNALMYNEMMTLYMSVGQ--------------------V  208 (408)
Q Consensus       154 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~--------------------~  208 (408)
                      .....++..+...+...|++++|...+++..+..     ......++..+...|...|+                    +
T Consensus        84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~  163 (406)
T 3sf4_A           84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL  163 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence            1236688899999999999999999999876531     01114488899999999999                    9


Q ss_pred             HHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCch
Q 015370          209 EKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHL  279 (408)
Q Consensus       209 ~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~  279 (408)
                      ++|...+++....    +..|. ..++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  243 (406)
T 3sf4_A          164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  243 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence            9999999876532    21222 356788888999999999999999987652111122    23688899999999999


Q ss_pred             hhhHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-C----hhhHHHHHHHHHhcCC
Q 015370          280 VNAESSTLVEAEKSITQR-----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-T----SRNYICILSSYLMLGH  349 (408)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~  349 (408)
                      ++|.. .+.+........     ...++..+...|...|++++|.+.+++..+..... +    ...+..+...|...|+
T Consensus       244 ~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          244 ETASE-YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999 888776543321     14577888999999999999999999876542211 1    4467778889999999


Q ss_pred             HHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCCh
Q 015370          350 LKEVGEIIDQWKQSA----TSDFDISACNRLLGAFSDVGLT  386 (408)
Q Consensus       350 ~~~A~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~  386 (408)
                      +++|...+++..+..    .......++..+...+...|+.
T Consensus       323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            999999999876531    1111245677788888877765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=6.2e-14  Score=128.06  Aligned_cols=277  Identities=15%  Similarity=0.072  Sum_probs=212.5

Q ss_pred             CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-
Q 015370          121 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-----SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-  190 (408)
Q Consensus       121 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p-  190 (408)
                      ......+......+...|++++|...|++.....|+     ..+|..+...+...|++++|...+++....    +-.| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            445667777888999999999999999987655443     467889999999999999999999986543    2122 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCC--------------------HHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN----VVP-DIFTYNLWISSCAATLN--------------------IDQ  245 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~g~--------------------~~~  245 (408)
                      ...++..+...|...|++++|...+++.....    -.+ ...++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            25578889999999999999999998876531    111 14478888889999999                    999


Q ss_pred             HHHHHHHHhcC---CCC-CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-c----cchHHHHHHHHHhcCCHH
Q 015370          246 VKKFLDEMSCD---SGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKD  316 (408)
Q Consensus       246 a~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~  316 (408)
                      |...+++..+.   .+. +....++..+...|...|++++|.. .+.+........ +    ..++..+...|...|+++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            99998876541   111 1223468889999999999999999 888776643321 1    247888999999999999


Q ss_pred             HHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChH
Q 015370          317 KIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTE  387 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~  387 (408)
                      +|...+++....... ++    ..++..+...|...|++++|...+++..+.....++    ..++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999987654221 11    446778889999999999999999998764211222    567888999999999999


Q ss_pred             HHHHHHHHHHh
Q 015370          388 KANEFHMLLLQ  398 (408)
Q Consensus       388 ~a~~~~~~m~~  398 (408)
                      +|.+.+++..+
T Consensus       325 ~A~~~~~~al~  335 (406)
T 3sf4_A          325 QAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=2e-14  Score=131.82  Aligned_cols=167  Identities=8%  Similarity=-0.083  Sum_probs=100.9

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCCh----HHHHHHHHHHHhhcChHHHHHHHhcCCCC-------CC
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSD----SDYATRIDLMTKVFGIHSGERYFEGLPLS-------AK  155 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~  155 (408)
                      ....+..+...+...|++++|++.|++..+..  +.+.    ..+..+...+...|++++|...|++....       ..
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            34455667777888888888888888888764  2233    46777777788888888888777664332       12


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHhcCC-----------------HHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFNALMYNEMMTLYMSVGQ-----------------VEKVAL  213 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~  213 (408)
                      ...++..+...|...|++++|...|++..+.    + .+....++..+...|...|+                 +++|..
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            3556677777777777777777777765543    1 11123456666666666666                 666666


Q ss_pred             HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          214 VVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       214 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .+++..+.    +..+ ...++..+...+...|++++|...+++..+
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR  251 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            66554321    1111 123444445555555555555555555444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=2.9e-14  Score=130.78  Aligned_cols=275  Identities=15%  Similarity=0.037  Sum_probs=211.8

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-H----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCChh
Q 015370          124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-S----ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFNAL  193 (408)
Q Consensus       124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~-~~p~~~  193 (408)
                      ...+..+...+...|++++|...|++.....|+ .    .+|..+...|...|++++|...|++..+.    + .+....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            455667778889999999999999987665443 2    57889999999999999999999987653    1 123456


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLN-----------------IDQVKKFLD  251 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~  251 (408)
                      ++..+...|...|++++|...+++....    +-.| ...++..+...+...|+                 +++|.+.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            8899999999999999999999887653    1112 34578888889999999                 999999988


Q ss_pred             HHhcC---CCC-CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-c----cchHHHHHHHHHhcCCHHHHHHHH
Q 015370          252 EMSCD---SGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKDKIDQIW  322 (408)
Q Consensus       252 ~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~  322 (408)
                      +..+.   .+. +.....+..+...|...|++++|.. .+.+........ +    ...+..+...|...|++++|.+.+
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE-HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            76441   111 2234578889999999999999999 888877654321 1    237888999999999999999999


Q ss_pred             HHHHhccCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHH
Q 015370          323 KSLRMTKQKM-----TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANEFH  393 (408)
Q Consensus       323 ~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~  393 (408)
                      ++........     ....+..+...|...|++++|...+++..+.....+    ...++..+...|.+.|++++|.+.+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            8876543211     145677889999999999999999998875321111    2457888999999999999999999


Q ss_pred             HHHHhc
Q 015370          394 MLLLQK  399 (408)
Q Consensus       394 ~~m~~~  399 (408)
                      ++..+.
T Consensus       367 ~~al~~  372 (411)
T 4a1s_A          367 EQHLQL  372 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=6.8e-14  Score=124.06  Aligned_cols=278  Identities=13%  Similarity=0.040  Sum_probs=155.8

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC----hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLS----DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLH  165 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~  165 (408)
                      .+......+...|++++|+..|+++.+..  +.+    ...+..+...+...|++++|.+.+++....            
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------   72 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------   72 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence            34445556666677777777777666643  112    234455555555556655555555443221            


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 015370          166 LYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD----IFTYNLWISSCAA  239 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~  239 (408)
                                       ....+- +....++..+...|...|++++|...+++..+... .++    ..++..+...+..
T Consensus        73 -----------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           73 -----------------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA  135 (338)
T ss_dssp             -----------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence                             000000 01123344444444444555555444444332100 001    2244444445555


Q ss_pred             cCC--------------------HHHHHHHHHHHhcC---CC-CCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc
Q 015370          240 TLN--------------------IDQVKKFLDEMSCD---SG-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT  295 (408)
Q Consensus       240 ~g~--------------------~~~a~~~~~~~~~~---~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  295 (408)
                      .|+                    +++|.+.+++....   .+ .+.....+..+...|...|++++|.. .+.+..+...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~  214 (338)
T 3ro2_A          136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAK  214 (338)
T ss_dssp             HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHH
T ss_pred             cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHH
Confidence            555                    55555555443221   01 11123346667777777777777777 6666554322


Q ss_pred             cC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 015370          296 QR-----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSAT  365 (408)
Q Consensus       296 ~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  365 (408)
                      ..     ...++..+...+...|++++|.+.+++....... .+    ..++..+...+...|++++|...+++..+...
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            11     1236777788888888988888888876543221 11    34566778888899999999999988765321


Q ss_pred             CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          366 SDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       366 ~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      ...+    ..++..+...|.+.|++++|...+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            1112    446778888999999999999999988763

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=1.7e-13  Score=121.39  Aligned_cols=269  Identities=13%  Similarity=0.006  Sum_probs=156.9

Q ss_pred             hhcCCCCcHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCC----ChHHHHHHHHHHH
Q 015370           64 RISLPKRSATNVIQRWVSEGNQAT----VSELRHILKELRKSQRYKHALEISEWMVTHKEFVL----SDSDYATRIDLMT  135 (408)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~  135 (408)
                      ....+.+.|...+++..+... .+    ...+..+...+...|++++|++.+++..+...-.+    ....+..+...+.
T Consensus        16 ~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           16 CKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            334667889999999888742 23    46788899999999999999999998765310001    1234444555555


Q ss_pred             hhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC-------
Q 015370          136 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVGQ-------  207 (408)
Q Consensus       136 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~-------  207 (408)
                      ..|++++|...+++.....                             ...+- .....++..+...|...|+       
T Consensus        95 ~~g~~~~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDIS-----------------------------RELNDKVGEARALYNLGNVYHAKGKSFGCPGP  145 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             HccCHHHHHHHHHHHHHHH-----------------------------HHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence            5555555555544432210                             00000 0012244444555555555       


Q ss_pred             -------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---C-CCCCHHH
Q 015370          208 -------------VEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---G-GSDDWVK  265 (408)
Q Consensus       208 -------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~~~  265 (408)
                                   +++|...+++....    +..| ...++..+...+...|++++|...+++..+..   + ......+
T Consensus       146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  225 (338)
T 3ro2_A          146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  225 (338)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                         55555555443321    1111 12345555556666666666666666554310   0 0011225


Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-C----Chh
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQR-----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-M----TSR  335 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~  335 (408)
                      +..+...+...|++++|.. .+.+........     ...++..+...+...|++++|...+++....... .    ...
T Consensus       226 ~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          226 YSNLGNAYIFLGEFETASE-YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            6667777777777777777 666655432221     1446667777888888888888888876543211 1    133


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          336 NYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ++..+...|.+.|++++|...+++..+.
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            5667888888999999999999888763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=5.1e-13  Score=121.36  Aligned_cols=298  Identities=9%  Similarity=-0.047  Sum_probs=207.8

Q ss_pred             HHhcccHHHHHHHHHHHHhcc-CCCCChH--HHHHHHHH--HHhhcChHHHH-----------HHHhcCCCCCCCHH---
Q 015370           98 LRKSQRYKHALEISEWMVTHK-EFVLSDS--DYATRIDL--MTKVFGIHSGE-----------RYFEGLPLSAKTSE---  158 (408)
Q Consensus        98 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~---  158 (408)
                      +.+.+++++|..+++.+.+.- ....|..  .|-.++..  ....++++.+.           +.++.+...+.+..   
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            356789999999999987642 1223432  23333322  12233444444           55555433222212   


Q ss_pred             ---HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---CC
Q 015370          159 ---TYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--V---VP  225 (408)
Q Consensus       159 ---~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~---~p  225 (408)
                         .+......+...|++++|...|++....    +-++ ...+|..+...|...|++++|...+++..+.-  .   .+
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence               2233567788999999999999998864    2111 34688999999999999999999998876421  1   11


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCC-CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHH-----hcc
Q 015370          226 -DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEK-----SIT  295 (408)
Q Consensus       226 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~  295 (408)
                       ...++..+...|...|++++|...+++..+..   +.. ....++..+...|...|++++|.. .+.+...     ...
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP-YFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhccc
Confidence             23578888889999999999999999876521   111 112468889999999999999999 8888776     221


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC---CC-ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCC
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ---KM-TSRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDF  368 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~  368 (408)
                      +....++..+...|...|++++|.+.+++..+...   .| ....+..+...+...|+   +++|..++++..   ..+.
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~  337 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYAD  337 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHH
Confidence            33466788999999999999999999998665421   11 12235667778888898   788888887752   1222


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          369 DISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       369 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      ....+..+...|...|++++|.+.+++..+.
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3456778999999999999999999998753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.55  E-value=1.1e-11  Score=109.00  Aligned_cols=235  Identities=11%  Similarity=0.018  Sum_probs=158.9

Q ss_pred             hHHHHHHHHHHHhh----cCh----HHHHHHHhcCCCC-CCCHHHHHHHHHHHH-------cCCCH-------HHHHHHH
Q 015370          124 DSDYATRIDLMTKV----FGI----HSGERYFEGLPLS-AKTSETYTALLHLYA-------GAKWT-------EKAEELF  180 (408)
Q Consensus       124 ~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~-~~~~~~~~~ll~~~~-------~~~~~-------~~A~~~~  180 (408)
                      ...|...+...-+.    ++.    ++|..+|++.... +.+...|..++..+.       +.|++       ++|..+|
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~   87 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY   87 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence            34566666654443    122    5677777776654 456777877777765       34665       7888888


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 015370          181 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IF-TYNLWISSCAATLNIDQVKKFLDEMSCDSG  258 (408)
Q Consensus       181 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  258 (408)
                      ++....-.+-+...|..++..+.+.|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+.  
T Consensus        88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--  163 (308)
T 2ond_A           88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--  163 (308)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence            88877311335567888888888888888888888888774  343 22 6777777778888888888888888763  


Q ss_pred             CCCCHHHHHHHHHHHH-HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCC--Ch
Q 015370          259 GSDDWVKYVNLVNIYI-TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-QKM--TS  334 (408)
Q Consensus       259 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~  334 (408)
                      .+++...|........ ..|+.++|.. +++...+..+. +...|..++..+.+.|++++|..+|++..... ..|  ..
T Consensus       164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          164 ARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            2344455544433322 2578888888 77777665443 56777777777778888888888888777652 233  23


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          335 RNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       335 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..|..++....+.|+.++|..+++++.+..
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            456667777777888888888888877754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.54  E-value=1.1e-11  Score=109.00  Aligned_cols=217  Identities=9%  Similarity=-0.032  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHhccCCCCChHHHHHHHHHHHh-------hcCh-------HHHHHHHhcCCC-CCC-CHHHHHHHHHHHH
Q 015370          105 KHALEISEWMVTHKEFVLSDSDYATRIDLMTK-------VFGI-------HSGERYFEGLPL-SAK-TSETYTALLHLYA  168 (408)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~~~~-~~~-~~~~~~~ll~~~~  168 (408)
                      ++|..+|++.....  +.++..|..++..+..       .|++       ++|..+|++... ..| +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            68889999998864  5677888888877763       5886       899999999877 344 5779999999999


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFN-AL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA-ATLNIDQ  245 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~  245 (408)
                      +.|++++|.++|++..+.  .|+ .. +|..+...+.+.|++++|..+|++..+... ++...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999985  343 44 899999999999999999999999998643 24444543333322 3699999


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-ccC--ccchHHHHHHHHHhcCCHHHHHHHH
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQR--QWITYDFLIILYAGLGNKDKIDQIW  322 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~  322 (408)
                      |..+|++..+.  .+.+...|..++..+.+.|++++|.. ++++..... .+|  ....|..++..+.+.|+.+.|..++
T Consensus       188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~  264 (308)
T 2ond_A          188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRV-LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999873  35578889999999999999999999 999988853 233  4668888999999999999999999


Q ss_pred             HHHHhcc
Q 015370          323 KSLRMTK  329 (408)
Q Consensus       323 ~~m~~~~  329 (408)
                      +++.+..
T Consensus       265 ~~a~~~~  271 (308)
T 2ond_A          265 KRRFTAF  271 (308)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9988764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=1.3e-13  Score=121.16  Aligned_cols=240  Identities=13%  Similarity=0.026  Sum_probs=158.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQS-------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK------N  222 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  222 (408)
                      +..++..+...+...|++++|..+|+++.+.       ..+....++..+...|...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3677888888888888888888888887762       22334567788888888888888888888877653      2


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----C-CCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-
Q 015370          223 VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-----G-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-  294 (408)
Q Consensus       223 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-  294 (408)
                      -.| ...++..+...+...|++++|...++++.+..     + .+.....+..+...|...|++++|.. .+.+..... 
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~  184 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY-YYQRALEIYQ  184 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHH
Confidence            222 35667777888888888888888888776521     1 12344557788888888888888888 777776541 


Q ss_pred             ------ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------CCCChhh-------HHHHHHHHHhcCCHHHHH
Q 015370          295 ------TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-------QKMTSRN-------YICILSSYLMLGHLKEVG  354 (408)
Q Consensus       295 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~-------~~~li~~~~~~g~~~~A~  354 (408)
                            .+....++..+...|...|++++|.+.+++..+..       ..+....       +..+...+...+.+.+|.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                  12234567788888888999999999888876531       1122111       222333344556666677


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          355 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ..++......  +.+..+|..+..+|.+.|++++|.+++++.++
T Consensus       265 ~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          265 GWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777665432  33567788899999999999999999998876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.50  E-value=8.2e-13  Score=123.31  Aligned_cols=214  Identities=11%  Similarity=-0.069  Sum_probs=168.4

Q ss_pred             ChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          139 GIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWT-EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE  216 (408)
Q Consensus       139 ~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  216 (408)
                      .++++.+.+++..... .+...|..+...+...|++ ++|++.|++..+.. +-+..+|..+...|.+.|++++|...|+
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3566666666655443 4688888888999999999 99999999888765 4457889999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------Cch
Q 015370          217 EIKRKNVVPDIFTYNLWISSCAAT---------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA--------SHL  279 (408)
Q Consensus       217 ~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~  279 (408)
                      +..+.  .|+...+..+...+...         |++++|.+.+++..+.  .+.+...|..+..+|...        |++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            88875  46677888888888888         8999999999988873  355677888888888888        889


Q ss_pred             hhhHHHHHHHHHHhccc--CccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015370          280 VNAESSTLVEAEKSITQ--RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII  357 (408)
Q Consensus       280 ~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  357 (408)
                      ++|.. .+++..+..+.  .+...|..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+
T Consensus       238 ~~A~~-~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALS-AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHH-HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH-HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998 88887776441  46778888888888999999999999887776422 4456777788888888888888765


Q ss_pred             HH
Q 015370          358 DQ  359 (408)
Q Consensus       358 ~~  359 (408)
                      .+
T Consensus       316 ~~  317 (474)
T 4abn_A          316 GK  317 (474)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=5e-12  Score=102.06  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=81.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +..+|..+...|.+.|++++|++.|++..+.. |-+..+|..+...|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            44555555555555555555555555555443 234455555555555555555555555555443222 3344444444


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK  315 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  315 (408)
                      .+...++++.+...+++....  .+.+...+..+...|.+.|++++|++ .+++..+..+. +..+|..+...|.+.|++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIE-AYEKTISIKPG-FIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHH-HHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence            555555555555555554441  23344444455555555555555555 44444433222 334444444455555555


Q ss_pred             HHHHHHHHHHH
Q 015370          316 DKIDQIWKSLR  326 (408)
Q Consensus       316 ~~a~~~~~~m~  326 (408)
                      ++|.+.|++..
T Consensus       158 ~~A~~~~~~al  168 (184)
T 3vtx_A          158 DEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.50  E-value=3.9e-11  Score=120.08  Aligned_cols=252  Identities=10%  Similarity=0.063  Sum_probs=140.8

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHH
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE  174 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  174 (408)
                      ...+...|.+++|..+|++...      .....+.++   ...+++++|.++.++..    +..+|..+..++.+.|+++
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLi---e~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLI---EHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHH---HHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHH
Confidence            3445555666666666666421      112222222   25556666666665442    4566667777777777777


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      +|...|.+.      -|...|..++.++.+.|++++|.+.|...++..  ++....+.++.+|++.+++++...+.    
T Consensus      1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A         1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred             HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence            777777443      256666777777777777777777776655543  23223334666666666666433332    


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 015370          255 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS  334 (408)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  334 (408)
                      +    .++...|..+...|...|++++|.. ++...         ..|..+...|.+.|++++|.+.+++.      -+.
T Consensus      1191 ~----~~n~ad~~~iGd~le~eg~YeeA~~-~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A         1191 N----GPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred             h----CCCHHHHHHHHHHHHhcCCHHHHHH-HHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence            2    1344455566666667777777766 55542         36666666677777777776666543      133


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          335 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       335 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      .+|..+-.+|...|++..|......+      ..+...+..++..|.+.|.+++|..+++..+
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            44544444555555555554443321      1233344456666666666666666665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=2.4e-12  Score=120.16  Aligned_cols=215  Identities=10%  Similarity=-0.076  Sum_probs=183.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370          172 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      .++++++.+++..... +.+...|..+...+...|++ ++|+..|++..+.... +..+|..+..+|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3677888888877654 45788999999999999999 9999999999886432 5789999999999999999999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHc---------CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc--------C
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL--------G  313 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~  313 (408)
                      ++..+.   .|+...+..+...|...         |++++|.. .+++..+..+. +...|..+...|...        |
T Consensus       161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence            999984   36678899999999999         99999999 88888776544 678899999999998        9


Q ss_pred             CHHHHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQK--MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE  391 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  391 (408)
                      ++++|++.|++..+....  -+...|..+..+|...|++++|.+.|++..+..  +.+...+..+..++...|++++|.+
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876421  267788899999999999999999999998865  4467788899999999999999987


Q ss_pred             HHHH
Q 015370          392 FHML  395 (408)
Q Consensus       392 ~~~~  395 (408)
                      .+.+
T Consensus       314 ~~~~  317 (474)
T 4abn_A          314 SKGK  317 (474)
T ss_dssp             HTTT
T ss_pred             Hhcc
Confidence            5543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=1.2e-11  Score=99.69  Aligned_cols=166  Identities=14%  Similarity=0.047  Sum_probs=92.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      ++.+|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...++.....  .+.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence            4556666666666666666666666666654322 4555666666666666666666666665552  233445555555


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL  350 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  350 (408)
                      ..+...++++.|.. .+.......+. +...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++
T Consensus        81 ~~~~~~~~~~~a~~-~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           81 SANFMIDEKQAAID-ALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHH-HHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence            55666666666665 55544433222 4445555555555555555555555555544321 344455555555555555


Q ss_pred             HHHHHHHHHHHh
Q 015370          351 KEVGEIIDQWKQ  362 (408)
Q Consensus       351 ~~A~~~~~~~~~  362 (408)
                      ++|...|++..+
T Consensus       158 ~~A~~~~~~al~  169 (184)
T 3vtx_A          158 DEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.47  E-value=7.3e-11  Score=118.21  Aligned_cols=257  Identities=9%  Similarity=0.036  Sum_probs=149.7

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEEL  179 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~  179 (408)
                      ..+++++|.++.++.       -++.+|..+..++...|++++|...|.+.    .|...|..++.++.+.|++++|.+.
T Consensus      1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            556777777777644       13566777777777777777777777553    4666677777777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 015370          180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG  259 (408)
Q Consensus       180 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  259 (408)
                      |...++..  +++...+.++.+|++.+++++...+.    .   .|+...|..+...|...|++++|..+|...      
T Consensus      1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A         1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred             HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence            77666543  33333334677777777666533332    1   234455555666677777777777777663      


Q ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh------------------------cccCccchHHHHHHHHHhcCCH
Q 015370          260 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------------------------ITQRQWITYDFLIILYAGLGNK  315 (408)
Q Consensus       260 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~~li~~~~~~~~~  315 (408)
                          ..|..+..+|++.|++++|.+ .+.+....                        ....+...+..++..|.+.|.+
T Consensus      1222 ----~ny~rLA~tLvkLge~q~AIE-aarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A         1222 ----SNFGRLASTLVHLGEYQAAVD-GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred             ----hHHHHHHHHHHHhCCHHHHHH-HHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence                246666677777777776666 44433110                        0111223344556666666777


Q ss_pred             HHHHHHHHHHHhccCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCChH
Q 015370          316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLM--LGHLKEVGEIIDQWKQSATSDF------DISACNRLLGAFSDVGLTE  387 (408)
Q Consensus       316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~  387 (408)
                      ++|+.+++.-.... +-....|+-+...|++  -++..++.++|..-   ..++|      +...|..++-.|.+.|+++
T Consensus      1297 eEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A         1297 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred             HHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence            77777665443222 1122234444444443  33444444444432   11222      4556888888888888888


Q ss_pred             HHHH
Q 015370          388 KANE  391 (408)
Q Consensus       388 ~a~~  391 (408)
                      .|..
T Consensus      1373 nA~~ 1376 (1630)
T 1xi4_A         1373 NAII 1376 (1630)
T ss_pred             HHHH
Confidence            8773

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=5e-13  Score=117.28  Aligned_cols=239  Identities=12%  Similarity=0.056  Sum_probs=116.6

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhcc------CCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-------
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHK------EFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-------  153 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------  153 (408)
                      +..++..+...+...|++++|+.+|+++.+..      ........+..+...+...|++++|...|++....       
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            45667777778888888888888888776520      01222345556666666666666666665543321       


Q ss_pred             --CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 015370          154 --AKTSETYTALLHLYAGAKWTEKAEELFERVKQS------NL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---  221 (408)
Q Consensus       154 --~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  221 (408)
                        .....++..+...|...|++++|.+.|++..+.      +- +....++..+...+...|++++|...++++...   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              112344555555555555555555555554432      11 112234444445555555555555555444432   


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc---
Q 015370          222 ---NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT---  295 (408)
Q Consensus       222 ---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---  295 (408)
                         +..|                                   ....++..+...|...|++++|.. .+.++.....   
T Consensus       186 ~~~~~~~-----------------------------------~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~  229 (311)
T 3nf1_A          186 KLGPDDP-----------------------------------NVAKTKNNLASCYLKQGKFKQAET-LYKEILTRAHERE  229 (311)
T ss_dssp             TSCTTCH-----------------------------------HHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHH
T ss_pred             HhCCCCH-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhc
Confidence               1111                                   122234444455555555555555 4444433211   


Q ss_pred             -----cCccc------hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          296 -----QRQWI------TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       296 -----~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                           .....      .+..+...+...+.+.++...+....... ..+..++..+...|.+.|++++|..+|++..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 01111      12222333344455555666666554332 12445677788888888888888888888765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.43  E-value=7.5e-11  Score=106.83  Aligned_cols=309  Identities=10%  Similarity=-0.036  Sum_probs=209.1

Q ss_pred             CCChhhHHHHHHHH--HhcccHHHHHHHHHHHHhcc-CCCCChH--HHHHHHHH--HHhhcChHHHH---------HHHh
Q 015370           85 QATVSELRHILKEL--RKSQRYKHALEISEWMVTHK-EFVLSDS--DYATRIDL--MTKVFGIHSGE---------RYFE  148 (408)
Q Consensus        85 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~~li~~--~~~~g~~~~a~---------~~~~  148 (408)
                      .|+..+-+.+-..|  ...+++++|.++++.+.+.. ....|..  .|-.++..  ....+.++.+.         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34444444455555  78899999999999886632 1223332  23333322  11223333333         4444


Q ss_pred             cCCCCC-C-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          149 GLPLSA-K-T----SETYTALLHLYAGAKWTEKAEELFERVKQSNL-SF----NALMYNEMMTLYMSVGQVEKVALVVEE  217 (408)
Q Consensus       149 ~~~~~~-~-~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~  217 (408)
                      .+.... + +    ...|......+...|++++|...|++..+.-- .+    ...++..+...|...|++++|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            443221 1 1    11234445667889999999999999876421 11    345788999999999999999999988


Q ss_pred             HHhC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCC-CCHHHHHHHHHHHHHcCchhhhHHHHH
Q 015370          218 IKRK----NV-VP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTL  287 (408)
Q Consensus       218 m~~~----g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~  287 (408)
                      ..+.    +- .+ ...+++.+..+|...|++++|.+.+++..+..   +.+ ....++..+...|...|++++|.. .+
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~-~~  245 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE-HF  245 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence            7642    11 11 24577888889999999999999998876521   111 123468889999999999999999 88


Q ss_pred             HHHHH-----hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC----hhhHHHHHHHHHhcCC---HHHHHH
Q 015370          288 VEAEK-----SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT----SRNYICILSSYLMLGH---LKEVGE  355 (408)
Q Consensus       288 ~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~---~~~A~~  355 (408)
                      .+...     ..+. ...++..+...+.+.|++++|...+++..+.....+    ...+..+...+...++   +++|..
T Consensus       246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            88776     3333 367888899999999999999999998776533211    2234455566667788   788888


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          356 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ++++.   +..+.....+..+...|...|++++|...|++..+
T Consensus       325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            87763   21222334677889999999999999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=7.3e-11  Score=94.76  Aligned_cols=165  Identities=10%  Similarity=-0.044  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 015370          125 SDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM  203 (408)
Q Consensus       125 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~  203 (408)
                      ..+..+...+...|++++|...|+++.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            456666777788888888888888877663 457778888888888888888888888877653 446677777888888


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhH
Q 015370          204 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE  283 (408)
Q Consensus       204 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  283 (408)
                      ..|++++|.+.++++..... .+...+..+...+...|++++|..+++++.+.  .+.+...+..+...+...|++++|.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888887776532 35666777777777788888888888777663  2445666777777777777777777


Q ss_pred             HHHHHHHHHhc
Q 015370          284 SSTLVEAEKSI  294 (408)
Q Consensus       284 ~~~~~~~~~~~  294 (408)
                      . .+....+..
T Consensus       165 ~-~~~~~~~~~  174 (186)
T 3as5_A          165 P-HFKKANELD  174 (186)
T ss_dssp             H-HHHHHHHHH
T ss_pred             H-HHHHHHHcC
Confidence            7 666665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.40  E-value=9e-11  Score=108.80  Aligned_cols=94  Identities=15%  Similarity=0.009  Sum_probs=35.4

Q ss_pred             CCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccH---HHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc-----
Q 015370           67 LPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRY---KHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF-----  138 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----  138 (408)
                      .+.+.|.+.++...+.|.   ...+..+...+...|+.   ++|++.|++..+.     ++..+..+...+...+     
T Consensus        17 g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~   88 (452)
T 3e4b_A           17 GDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEA   88 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHHHHTC--CCHH
T ss_pred             CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCc
Confidence            345566777777666653   33334455555556666   6777777766532     4455555555444433     


Q ss_pred             ChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc
Q 015370          139 GIHSGERYFEGLPLSAKTSETYTALLHLYAG  169 (408)
Q Consensus       139 ~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~  169 (408)
                      ++++|..+|++....+ +...+..|...|..
T Consensus        89 ~~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~~  118 (452)
T 3e4b_A           89 EHHEAESLLKKAFANG-EGNTLIPLAMLYLQ  118 (452)
T ss_dssp             HHHHHHHHHHHHHHTT-CSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence            5667777777654432 12244444444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=1.2e-10  Score=93.45  Aligned_cols=165  Identities=11%  Similarity=-0.018  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHH
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII  307 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  307 (408)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.. .+..+.+..+ .+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~a~   84 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTE-LLERSLADAP-DNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCC-CCHHHHHHHHH
Confidence            34445555666666666666666666552  23455566666666666677776666 6665554432 24556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 015370          308 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE  387 (408)
Q Consensus       308 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  387 (408)
                      .+...|++++|.+.+++...... .+...+..+...+...|++++|..++++..+..  +.+...+..+...+...|+++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHH
Confidence            67777777777777776665532 245556667777777777777777777777654  345667777777777777777


Q ss_pred             HHHHHHHHHHhc
Q 015370          388 KANEFHMLLLQK  399 (408)
Q Consensus       388 ~a~~~~~~m~~~  399 (408)
                      +|...++++.+.
T Consensus       162 ~A~~~~~~~~~~  173 (186)
T 3as5_A          162 EALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            777777777653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=3.2e-10  Score=102.35  Aligned_cols=268  Identities=9%  Similarity=-0.016  Sum_probs=188.2

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCChH----HHHHHHHHHHhhcChHHHHHHHhcCCCC---CCC----HHHHH
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDS----DYATRIDLMTKVFGIHSGERYFEGLPLS---AKT----SETYT  161 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~  161 (408)
                      .....+...|++++|...+++..... ...+..    .++.+...+...|++++|.+.+++....   ..+    ..++.
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34456677899999999999988753 122222    4566778888999999999988875543   122    34467


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQS----NLS--F-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--P--DIFTY  230 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~  230 (408)
                      .+...+...|++++|...+++....    +.+  | ...++..+...+...|++++|...+++.......  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            7888899999999999999887652    221  2 2446777888899999999999999988753221  1  24567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHH----HHHHHHHHcCchhhhHHHHHHHHHHhcccCc---cchH
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-WVKYV----NLVNIYITASHLVNAESSTLVEAEKSITQRQ---WITY  302 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~  302 (408)
                      ..+...+...|++++|...+++.......... .....    ..+..+...|++++|.. .+.........+.   ...+
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN-WLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHH-HHHhCCCCCCCcchhhHHHH
Confidence            77888899999999999999987642111111 11111    23345779999999999 7776654332211   2245


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccCC----CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          303 DFLIILYAGLGNKDKIDQIWKSLRMTKQK----MTS-RNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      ..+...+...|++++|...+++.......    ++. ..+..+..++...|+.++|...+++...
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            67788889999999999999887544221    122 2455677788899999999999998765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.38  E-value=1.6e-11  Score=111.38  Aligned_cols=289  Identities=9%  Similarity=-0.066  Sum_probs=201.8

Q ss_pred             CCCCcHHHHHHHHHHcC--CCCCh--hhHHHHHHHH--HhcccHHHHH-----------HHHHHHHhccCCCCChHH---
Q 015370           67 LPKRSATNVIQRWVSEG--NQATV--SELRHILKEL--RKSQRYKHAL-----------EISEWMVTHKEFVLSDSD---  126 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g--~~~~~--~~~~~li~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~~---  126 (408)
                      .+.+.|..++++..+.-  ...+.  ..|..++..-  ...+.++.+.           +.++.+....   .+...   
T Consensus        26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~~~l~  102 (383)
T 3ulq_A           26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLTGLLE  102 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCchhHHH
Confidence            45567777777766542  22333  3334444322  1224444444           6677665432   11122   


Q ss_pred             ---HHHHHHHHHhhcChHHHHHHHhcCCCC---CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C--CCC
Q 015370          127 ---YATRIDLMTKVFGIHSGERYFEGLPLS---AK----TSETYTALLHLYAGAKWTEKAEELFERVKQS----N--LSF  190 (408)
Q Consensus       127 ---~~~li~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~--~~p  190 (408)
                         +-.....+...|++++|...|++....   .+    ...+|..+...|...|++++|...+++..+.    +  .+.
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence               223566778899999999999986553   12    3578999999999999999999999987653    1  011


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCC-CC
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGG-SD  261 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~  261 (408)
                      ...+++.+...|...|++++|...|++..+.    +-.+ ...++..+...|...|++++|...+++..+.   .+. +.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            2457899999999999999999999887643    1111 1247888899999999999999999987761   122 34


Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc----CccchHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCC-C
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ----RQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKM-T  333 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p-~  333 (408)
                      ...++..+...|.+.|++++|.. .+.+.......    .....+..+...+...|+   +++|+.++++.   +..| .
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~  338 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHE-YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL  338 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence            46678999999999999999999 88777654321    122335677778888898   77777777654   3233 2


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          334 SRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       334 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      ...+..+...|...|++++|...+++..+
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566788999999999999999998865

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.36  E-value=3.3e-10  Score=102.29  Aligned_cols=271  Identities=12%  Similarity=0.059  Sum_probs=191.7

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCCC--CCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCC-CChhhH
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLSA--KTS----ETYTALLHLYAGAKWTEKAEELFERVKQS----NLS-FNALMY  195 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~  195 (408)
                      .......+...|++++|...+++.....  .+.    .+++.+...+...|++++|.+.+++....    |.. ....++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3344456678899999999987643331  222    35677788899999999999999987652    210 012346


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCCHHH
Q 015370          196 NEMMTLYMSVGQVEKVALVVEEIKRK----NVV--PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSDDWVK  265 (408)
Q Consensus       196 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~  265 (408)
                      ..+...+...|++++|...+++....    +..  |. ..++..+...+...|++++|...+++.....   +.+.....
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            77888899999999999999887642    222  32 3456667888999999999999999876521   11112356


Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc-chHH-----HHHHHHHhcCCHHHHHHHHHHHHhccCCCC---hhh
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQW-ITYD-----FLIILYAGLGNKDKIDQIWKSLRMTKQKMT---SRN  336 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~  336 (408)
                      +..+...+...|++++|.. .+.+.......++. ..+.     ..+..+...|++++|...+++.......++   ...
T Consensus       177 ~~~la~~~~~~g~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH-HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            7888999999999999999 88887665333322 1222     233447789999999999998765432211   224


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          337 YICILSSYLMLGHLKEVGEIIDQWKQSAT---SDFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       337 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +..+...+...|++++|...+++......   ..++. ..+..+..++...|+.++|...+++..+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            56678889999999999999998765321   11122 3666678888999999999999988764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.33  E-value=3.5e-10  Score=104.82  Aligned_cols=188  Identities=12%  Similarity=0.042  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015370          159 TYTALLHLYAGAK---WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV----GQVEKVALVVEEIKRKNVVPDIFTYN  231 (408)
Q Consensus       159 ~~~~ll~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~  231 (408)
                      .+..|...|.+.|   +.++|++.|++..+.| +++...+..+...|...    +++++|...|+... .|   +...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence            4455555555555   5555555555555554 23333334444444332    45555555555544 22   223333


Q ss_pred             HHHHH-H--HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-----chhhhHHHHHHHHHHhcccCccchHH
Q 015370          232 LWISS-C--AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS-----HLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       232 ~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .+... +  ...+++++|.+.|++..+. |   +...+..|...|. .|     ++++|.. .+.+..    +.+...+.
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~-~~~~Aa----~g~~~A~~  322 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA-HFEKAV----GREVAADY  322 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH-HHHTTT----TTCHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH-HHHHHh----CCCHHHHH
Confidence            33333 2  2345555555555555542 2   3444444444444 22     5555555 444333    22334444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 015370          304 FLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       304 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~  364 (408)
                      .|...|..    ..+.++|...|++..+.|   +......|...|..    ..+.++|..+|+...+.|
T Consensus       323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            44444443    225555555555544433   12233333333332    235555555555555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=1e-10  Score=113.83  Aligned_cols=163  Identities=12%  Similarity=0.015  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ..+|+.|...|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|+..|++..+.... +..+|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4445555555555555555555555554432 223445555555555555555555555555443211 34445555555


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD  316 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  316 (408)
                      +...|++++|++.|++..+.  .+.+...|+.+..+|.+.|++++|+. .+++..+..+. +...|..+...+...|+++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIA-SYRTALKLKPD-FPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence            55555555555555555441  22344445555555555555555555 45544443322 3444555555555555555


Q ss_pred             HHHHHHHHH
Q 015370          317 KIDQIWKSL  325 (408)
Q Consensus       317 ~a~~~~~~m  325 (408)
                      +|.+.+++.
T Consensus       163 ~A~~~~~ka  171 (723)
T 4gyw_A          163 DYDERMKKL  171 (723)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=4.8e-11  Score=102.86  Aligned_cols=205  Identities=13%  Similarity=0.019  Sum_probs=116.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------C
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------S  257 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~  257 (408)
                      ...++..+...|...|++++|...+++....      +-.| ...++..+...+...|++++|...+++..+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            3456666666677777777777776666543      1112 2345666666677777777777776665542      0


Q ss_pred             CCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-------ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc-
Q 015370          258 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-------TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-  329 (408)
Q Consensus       258 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-  329 (408)
                      ..+.....+..+...|...|++++|.. .+.+..+..       .+....++..+...|...|++++|.+.+++..+.. 
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            112334556677777777777777777 666655431       11234566777777788888888888887765431 


Q ss_pred             ------CCCChhh-HHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          330 ------QKMTSRN-YICILSSYLMLGH------LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       330 ------~~p~~~~-~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                            ..+.... +..+...+...+.      +..+...++.....  .+....++..+...|...|++++|..++++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SPTVNTTLRSLGALYRRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                  1222222 2233333332222      22333333322111  1123456788888999999999999999887


Q ss_pred             Hh
Q 015370          397 LQ  398 (408)
Q Consensus       397 ~~  398 (408)
                      ++
T Consensus       279 l~  280 (283)
T 3edt_B          279 SR  280 (283)
T ss_dssp             HT
T ss_pred             HH
Confidence            75

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.30  E-value=1.9e-10  Score=111.93  Aligned_cols=166  Identities=10%  Similarity=-0.021  Sum_probs=99.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      +..+|+.|...|.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|++.|++..+.  .+.+...|..+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            3556677777777777777777777766664322 3556666666666677777777776666652  234455666666


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL  350 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  350 (408)
                      .+|.+.|++++|++ .+++..+..+. +...|+.+...|...|++++|++.|++..+.... +...+..+..++...|++
T Consensus        85 ~~l~~~g~~~~A~~-~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQ-CYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence            66666666666666 56555544322 4555666666666666666666666655554221 344455566666666666


Q ss_pred             HHHHHHHHHHHh
Q 015370          351 KEVGEIIDQWKQ  362 (408)
Q Consensus       351 ~~A~~~~~~~~~  362 (408)
                      ++|.+.+++..+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.28  E-value=1.3e-09  Score=90.95  Aligned_cols=198  Identities=11%  Similarity=-0.021  Sum_probs=135.1

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      .|...+......+.+.|++++|...|++..+..-+++...+..+..++...|++++|...|++..+.... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567788888888888888888888888887653367777777888888888888888888888875432 556777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-ccchHHHHH
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDDW-------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLI  306 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li  306 (408)
                      .++...|++++|...+++..+.  .+.+.       ..|..+...+.+.|++++|.. .+....+..+.. +...|..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHHhcCCCcccHHHHHHHH
Confidence            8888888888888888888773  23344       457777777888888888888 777665542210 245566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          307 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ..|...|     ..+++++...+. .+...|....  ....+.+++|...+++..+..
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            6665443     333444444331 2333333332  233456788888888887754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.25  E-value=9e-08  Score=92.19  Aligned_cols=130  Identities=11%  Similarity=0.114  Sum_probs=88.9

Q ss_pred             CCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcC---hHHHHH
Q 015370           69 KRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFG---IHSGER  145 (408)
Q Consensus        69 ~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~  145 (408)
                      +.+....++.-+..+ +-|...|..++..+.+.+.++.+..+|+.+...  ++.+...|...+..-.+.++   ++.+.+
T Consensus        48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            344555566666553 568888999999888888899999999998886  46677778888888778888   888888


Q ss_pred             HHhcCCCCC---CCHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHH
Q 015370          146 YFEGLPLSA---KTSETYTALLHLYAGAKWT--------EKAEELFERVKQ-SNL-SFN-ALMYNEMMTL  201 (408)
Q Consensus       146 ~~~~~~~~~---~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~  201 (408)
                      +|++.....   |++..|...+....+.++.        +.+.++|+..+. .|. .|+ ...|...+..
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f  194 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF  194 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            888877665   7888888877765554443        334466766443 344 333 3456555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=1.2e-09  Score=98.89  Aligned_cols=201  Identities=10%  Similarity=-0.059  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-C
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-D  226 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~  226 (408)
                      .++..+...|...|++++|...+++..+.    + ..+ ...+++.+...|...|++++|...|++..+.    +..+ .
T Consensus       142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  221 (378)
T 3q15_A          142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI  221 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34444555555555555555555444321    0 000 1334555555555555555555555544321    1111 1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC----cc
Q 015370          227 IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR----QW  299 (408)
Q Consensus       227 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~  299 (408)
                      ..++..+..+|...|++++|.+.+++..+.   .+.+....++..+...|.+.|++++|.. .+++........    ..
T Consensus       222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~  300 (378)
T 3q15_A          222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGLDHITARSHKFYK  300 (378)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCTTCCSCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHH
Confidence            234445555555556666555555554430   0112224445555666666666666666 555554432211    11


Q ss_pred             chHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          300 ITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       300 ~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      ..+..+...+...++   +.+|+..+++   .+..|+ ...+..+...|...|++++|...|++..+
T Consensus       301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          301 ELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            233344444445555   5555555543   222222 22344566667777777777777766654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.25  E-value=7.3e-10  Score=92.57  Aligned_cols=205  Identities=11%  Similarity=-0.015  Sum_probs=155.1

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHH
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALL  164 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll  164 (408)
                      .|+..+......+...|++++|++.|+...+.. ..++...+..+..++...|++++|++.|++.....| +..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            466888889999999999999999999999875 227778888889999999999999999998776654 578899999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNA-------LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLWI  234 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll  234 (408)
                      ..|...|++++|+..|++..+.. +.+.       ..|..+...+...|++++|...|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            99999999999999999998864 3344       55888888899999999999999999875  455   45666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH
Q 015370          235 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL  305 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  305 (408)
                      .++...|     ..+++++...  ...+...|....  ....+.+++|.. .+++..+..+. +..+...+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~-~~~~a~~l~p~-~~~~~~~l  220 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPL--ASSNKEKYASEK--AKADAAFKKAVD-YLGEAVTLSPN-RTEIKQMQ  220 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHH-HHHHHhhcCCC-CHHHHHHH
Confidence            6665443     4445555552  223344444433  344567899999 88888776543 34444333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=8.2e-11  Score=101.38  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=149.4

Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhc------cCCCCChHHHHHHHHHHHhhcChHHHHHH
Q 015370           73 TNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTH------KEFVLSDSDYATRIDLMTKVFGIHSGERY  146 (408)
Q Consensus        73 ~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~  146 (408)
                      .++++.......+....++..+...+...|++++|++.+++..+.      +..+....++..+...+...|++++|...
T Consensus        28 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  107 (283)
T 3edt_B           28 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL  107 (283)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            333333333333445778899999999999999999999998764      21122356788899999999999999999


Q ss_pred             HhcCCCC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHH
Q 015370          147 FEGLPLS---------AKTSETYTALLHLYAGAKWTEKAEELFERVKQS------N-LSFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       147 ~~~~~~~---------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~  210 (408)
                      |++....         +....++..+...|...|++++|...|++..+.      + .+....++..+...|...|++++
T Consensus       108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  187 (283)
T 3edt_B          108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD  187 (283)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            8876543         123678899999999999999999999998765      1 12245688999999999999999


Q ss_pred             HHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 015370          211 VALVVEEIKRK-------NVVPDI-FTYNLWISSCAATLN------IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA  276 (408)
Q Consensus       211 a~~~~~~m~~~-------g~~p~~-~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  276 (408)
                      |...+++....       ...+.. ..+..+.......+.      +..+...++....  ..+....++..+...|.+.
T Consensus       188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~  265 (283)
T 3edt_B          188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQ  265 (283)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHc
Confidence            99999988753       122222 223333333332222      3333333333322  1233456688999999999


Q ss_pred             CchhhhHHHHHHHHHH
Q 015370          277 SHLVNAESSTLVEAEK  292 (408)
Q Consensus       277 ~~~~~a~~~~~~~~~~  292 (408)
                      |++++|.. .+++..+
T Consensus       266 g~~~~A~~-~~~~al~  280 (283)
T 3edt_B          266 GKLEAAHT-LEDCASR  280 (283)
T ss_dssp             TCHHHHHH-HHHHHHT
T ss_pred             CCHHHHHH-HHHHHHH
Confidence            99999999 8887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=7.3e-10  Score=96.44  Aligned_cols=233  Identities=8%  Similarity=-0.052  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHhccCCCCChHHHHHHHHHHHh--hcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015370          106 HALEISEWMVTHKEFVLSDSDYATRIDLMTK--VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERV  183 (408)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m  183 (408)
                      +|.+++.+..+.  .+++...+ .+   +..  .+++++|...|++             ....|...|++++|...|++.
T Consensus         3 ~a~~~~~~a~k~--~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKK--GVPSSGFM-KL---FSGSDSYKFEEAADLCVQ-------------AATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHH--SSCCCTHH-HH---HSCCSHHHHHHHHHHHHH-------------HHHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH--hCcCCCcc-hh---cCCCCCccHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHHHH
Confidence            455666666654  23322222 22   111  2247777776554             377788889999998888876


Q ss_pred             HhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 015370          184 KQS----NLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAAT-LNIDQVKKFLDE  252 (408)
Q Consensus       184 ~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~-g~~~~a~~~~~~  252 (408)
                      .+.    |-+++ ..+|+.+..+|.+.|++++|...|++....    |-.+. ..++..+...|... |++++|+..|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            543    31222 467888888888888888888888877642    11101 34566677777775 778888777777


Q ss_pred             HhcCCCCCCC----HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccc------hHHHHHHHHHhcCCHHHHHHHH
Q 015370          253 MSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI------TYDFLIILYAGLGNKDKIDQIW  322 (408)
Q Consensus       253 ~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~  322 (408)
                      ..+...-..+    ..++..+...|.+.|++++|.. .+.......+.....      .|..+..++...|++++|...|
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  222 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7652110001    2346667777777777777777 676666654432221      4555666677777777777777


Q ss_pred             HHHHhccCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHH
Q 015370          323 KSLRMTKQKMTSR------NYICILSSYL--MLGHLKEVGEIIDQW  360 (408)
Q Consensus       323 ~~m~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~  360 (408)
                      ++..+.  .|+..      .+..++.++.  ..+++++|+..|+++
T Consensus       223 ~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          223 QEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             HGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence            765443  23211      1233444443  345566666666553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=1.3e-09  Score=82.29  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~  168 (408)
                      .+..+...+...|++++|+++++++.+..  +.+...+..+...+...|++++|..+|+++.... .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            45566677777777777777777776653  3455666666666777777777777766654432 34556666666666


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      ..|++++|.+.++++.... +.+..++..+...+.+.|++++|...++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            7777777777776666543 33455666666666666666666666666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.15  E-value=1.8e-08  Score=86.51  Aligned_cols=245  Identities=12%  Similarity=0.058  Sum_probs=168.6

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHH
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE  174 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  174 (408)
                      ++-..-.|.+..++.-   ..+..+..+ ...--.+.+++...|++...      + ...|....+..+...+ ..+   
T Consensus        20 ikn~fy~G~yq~~i~e---~~~~~~~~~-~~~~~~~~Rs~iAlg~~~~~------~-~~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQE---IEKFSKVTD-NTLLFYKAKTLLALGQYQSQ------D-PTSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHH---HHTSSCCCC-HHHHHHHHHHHHHTTCCCCC------C-SSSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHHHHhhHHHHHHHH---HHhcCccch-HHHHHHHHHHHHHcCCCccC------C-CCCHHHHHHHHHHHHh-ccc---
Confidence            4556678999988873   332221112 22333345788888887642      1 2235555555555544 322   


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                       |+..|++....+ +++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             788888888765 556677778899999999999999999998776642 25677888899999999999999999999


Q ss_pred             hcCCCCCC-----CHHHHHHHHHH--HHHcC--chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          254 SCDSGGSD-----DWVKYVNLVNI--YITAS--HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS  324 (408)
Q Consensus       254 ~~~~~~~~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  324 (408)
                      .+.   .|     +..+...|..+  ....|  +..+|.. +|+++.+..+  +..+-..++.++.+.|++++|.+.++.
T Consensus       163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~-~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFY-YYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH-HHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            873   45     24555555555  33334  8999999 8998765543  322333455588899999999999997


Q ss_pred             HHhccC--------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          325 LRMTKQ--------KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       325 m~~~~~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      +.+.-+        .| ++.++..+|......|+  +|.+++.++.+..
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            765411        13 55566567766677787  8899999998854

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=4.3e-09  Score=79.30  Aligned_cols=130  Identities=17%  Similarity=0.095  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY  344 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  344 (408)
                      .|..+...+...|++++|.. ++..+.+..+ .+...+..+...+...|++++|...++++...+. .+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIE-YYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHH-HHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence            35566667777777777777 6666655432 2455666677777777777777777777766542 2455666777778


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 015370          345 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK  399 (408)
Q Consensus       345 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  399 (408)
                      ...|++++|..+++++.+..  +.+...+..+...+.+.|++++|...++++.+.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            88888888888888877754  345677777888888888888888888887763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.13  E-value=2.8e-09  Score=91.03  Aligned_cols=168  Identities=13%  Similarity=-0.020  Sum_probs=110.2

Q ss_pred             CCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC----CH
Q 015370           85 QATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS---DSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----TS  157 (408)
Q Consensus        85 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~  157 (408)
                      +.+...+..+...+.+.|++++|++.|+.+.+..  +.+   ...+..+..++.+.|++++|...|++.....|    ..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            3456677778888889999999999999998764  223   56777788888899999999988888765433    25


Q ss_pred             HHHHHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHhcCCHHHHH
Q 015370          158 ETYTALLHLYAG--------AKWTEKAEELFERVKQSNLSFNALMY-----------------NEMMTLYMSVGQVEKVA  212 (408)
Q Consensus       158 ~~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~  212 (408)
                      ..+..+..++.+        .|++++|...|+++.+.. |-+....                 ..+...|.+.|++++|.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            567777888888        888999999998888753 2233333                 33345555566666666


Q ss_pred             HHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhc
Q 015370          213 LVVEEIKRKNVVP--DIFTYNLWISSCAAT----------LNIDQVKKFLDEMSC  255 (408)
Q Consensus       213 ~~~~~m~~~g~~p--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~  255 (408)
                      ..|+.+.+.....  ....+..+..+|...          |++++|...|+++.+
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            6666555432211  123444444455443          555556665555554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.11  E-value=3.4e-08  Score=84.83  Aligned_cols=258  Identities=11%  Similarity=0.002  Sum_probs=170.1

Q ss_pred             cHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcC
Q 015370           71 SATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGL  150 (408)
Q Consensus        71 ~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  150 (408)
                      .-..++++..+-..........-+.+++...|++....         . -.|....+..+...+ ..+    |+..|+++
T Consensus        28 ~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~-~~~~~~a~~~la~~~-~~~----a~~~l~~l   92 (310)
T 3mv2_B           28 NFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------P-TSKLGKVLDLYVQFL-DTK----NIEELENL   92 (310)
T ss_dssp             CHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------S-SSTTHHHHHHHHHHH-TTT----CCHHHHHT
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------C-CCHHHHHHHHHHHHh-ccc----HHHHHHHH
Confidence            44556665443222222233334557777777766321         1 234433444444333 322    67778877


Q ss_pred             CCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 015370          151 PLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP---  225 (408)
Q Consensus       151 ~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---  225 (408)
                      ... .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.++.|.+.  .|   
T Consensus        93 ~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~  170 (310)
T 3mv2_B           93 LKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTV  170 (310)
T ss_dssp             TTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccccc
Confidence            665 36666667888999999999999999999877652 136778889999999999999999999999874  45   


Q ss_pred             --CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-----
Q 015370          226 --DIFTYNLWISS--CAATL--NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-----  294 (408)
Q Consensus       226 --~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----  294 (408)
                        +..+...+..+  ....|  ++.+|..+|+++.+.   .|++.....++.++.+.|++++|.+ .++.+.+.-     
T Consensus       171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~-~L~~l~~~~p~~~~  246 (310)
T 3mv2_B          171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQG-IVELLLSDYYSVEQ  246 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHH-HHHHHHSHHHHTTT
T ss_pred             ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHH-HHHHHHHhcccccc
Confidence              35566666655  33334  899999999999874   3554444555568999999999999 777655432     


Q ss_pred             ----ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          295 ----TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       295 ----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                          .+.+..+...+|......|+  +|.++++++++.  .|+....          -++.+....|+++..+
T Consensus       247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i----------~d~~~k~~~Fd~~~~k  305 (310)
T 3mv2_B          247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFI----------KHHQEIDAKFDELVRK  305 (310)
T ss_dssp             CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHH----------HHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHH----------HHHHHHHHHHHHHHHH
Confidence                23466677566666666776  888999988876  4554321          2345555666665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=8.4e-09  Score=89.70  Aligned_cols=211  Identities=12%  Similarity=-0.053  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 015370          172 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQV  246 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a  246 (408)
                      ++++|...|++.               ...|...|++++|...|++....    |-.++ ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            478888887776               34566788888888888776542    22222 45777888888888888888


Q ss_pred             HHHHHHHhcCC---CCCC-CHHHHHHHHHHHHHc-CchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHH
Q 015370          247 KKFLDEMSCDS---GGSD-DWVKYVNLVNIYITA-SHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKD  316 (408)
Q Consensus       247 ~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~  316 (408)
                      +..+++..+-.   |... ...+++.+...|... |++++|.. .+.+.....+..+     ..+++.+...+...|+++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID-CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            88887765421   1111 134677888888885 88888888 7777766433221     346777888888888888


Q ss_pred             HHHHHHHHHHhccCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHH--hcCC
Q 015370          317 KIDQIWKSLRMTKQKMTSR------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD---ISACNRLLGAFS--DVGL  385 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~--~~g~  385 (408)
                      +|+..|++..+........      .|..+..++...|++++|...|++..+....-++   ...+..++.++.  ..++
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            8888888877654332221      4566777788888888888888887653211111   123444556554  3566


Q ss_pred             hHHHHHHHHHHHh
Q 015370          386 TEKANEFHMLLLQ  398 (408)
Q Consensus       386 ~~~a~~~~~~m~~  398 (408)
                      +++|+..|+++..
T Consensus       256 ~~~A~~~~~~~~~  268 (292)
T 1qqe_A          256 LSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHTTSSC
T ss_pred             HHHHHHHhccCCc
Confidence            7778777766544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.11  E-value=2.8e-08  Score=84.79  Aligned_cols=188  Identities=9%  Similarity=-0.058  Sum_probs=130.8

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD-IFT  229 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~  229 (408)
                      .+...+-.+...+.+.|++++|...|+++.+.. +.+   ..++..+..+|.+.|++++|...|+...+... .|. ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            467778888888888999999999999988764 223   56788888888899999999999988887532 122 455


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccch
Q 015370          230 YNLWISSCAA--------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT  301 (408)
Q Consensus       230 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  301 (408)
                      +..+..++..        .|++++|...|+++.+..  +.+......+...               ......    ....
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~---------------~~~~~~----~~~~  150 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKI---------------RELRAK----LARK  150 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHH---------------HHHHHH----HHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHH---------------HHHHHH----HHHH
Confidence            6667777777        888888888888887742  2222222221111               001000    0112


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhhC
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLML----------GHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~  364 (408)
                      +..+...|...|++++|...|+++.+.....  ....+..+..+|...          |++++|...|+++.+..
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            4567788889999999999999888764321  234566677777766          88999999999998864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.10  E-value=5.3e-09  Score=90.69  Aligned_cols=174  Identities=10%  Similarity=-0.005  Sum_probs=132.5

Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCH
Q 015370           78 RWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTS  157 (408)
Q Consensus        78 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  157 (408)
                      .+...-.+.+...+..+...+.+.|++++|+..|++..+..  +-+...+..+..++.+.|++++|...++++....|+.
T Consensus       107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~  184 (287)
T 3qou_A          107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT  184 (287)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred             HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence            34444345566777788888889999999999999988864  4466788888889999999999999999888766665


Q ss_pred             HHHHHHH-HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 015370          158 ETYTALL-HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWIS  235 (408)
Q Consensus       158 ~~~~~ll-~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~  235 (408)
                      ....... ..+.+.++.++|...|++..... |.+...+..+...+...|++++|...|+++.+..... +...+..++.
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            4333333 33667777888888888888765 5577888888899999999999999998888764332 2567888888


Q ss_pred             HHHhcCCHHHHHHHHHHHh
Q 015370          236 SCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~  254 (408)
                      .+...|+.++|...+++..
T Consensus       264 ~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHH
Confidence            8888888888888777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=3.2e-09  Score=84.82  Aligned_cols=162  Identities=13%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH-HH
Q 015370           90 ELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL-YA  168 (408)
Q Consensus        90 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~-~~  168 (408)
                      .+......+.+.|++++|+..|++..+..  +.+...+..+..++...|++++|...|++.....|+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence            34456666777778888888887776653  4456677777777777888888888887776654444333222211 11


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVK  247 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~  247 (408)
                      +.++..+|...+++..+.. |-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2222334566677766653 3356677777777777777777777777777654332 2446666677777777777777


Q ss_pred             HHHHHHh
Q 015370          248 KFLDEMS  254 (408)
Q Consensus       248 ~~~~~~~  254 (408)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.08  E-value=3e-09  Score=87.55  Aligned_cols=163  Identities=10%  Similarity=0.019  Sum_probs=98.0

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHH----------------HHHHHHhhcChHHHHHHHhcCC
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYAT----------------RIDLMTKVFGIHSGERYFEGLP  151 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~  151 (408)
                      ...+......+...|++++|+..|++..+..  +-+...|..                +..++.+.|++++|+..|++..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444556667788999999999999998853  223445555                6666667777777777766655


Q ss_pred             CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 015370          152 LSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPDIF  228 (408)
Q Consensus       152 ~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~  228 (408)
                      ... .+...|..+..++...|++++|...|++..+.. |-+..+|..+...|...|+  .+.+...++....  ..|...
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            443 346666667777777777777777777766654 3355666666666654443  2334444443321  222223


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .+.....++...|++++|...|++..+
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            333344445556667777777776665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.04  E-value=1.4e-08  Score=83.37  Aligned_cols=122  Identities=12%  Similarity=0.016  Sum_probs=51.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 015370          233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL  312 (408)
Q Consensus       233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  312 (408)
                      +..++.+.|++++|...|++..+.  .+.+...+..+...|...|++++|.. .+++..+..+. +..+|..+...|...
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~P~-~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALR-MYEKILQLEAD-NLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence            444444445555555555444441  23344444445555555555555555 44444443222 334444444444333


Q ss_pred             CC--HHHHHHHHHHHHhccCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          313 GN--KDKIDQIWKSLRMTKQKMTSR--NYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       313 ~~--~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      |+  ...+...+....    .|+..  .+.....++...|++++|...|++.++
T Consensus       136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            22  222333333221    12221  222233344445566666666666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.02  E-value=1.5e-08  Score=98.87  Aligned_cols=183  Identities=8%  Similarity=-0.053  Sum_probs=146.5

Q ss_pred             HcCCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          168 AGAKWTEKAEELFERVK--------QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      ...|++++|++.+++..        +.. +.+...|..+...+...|++++|...|++..+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            78899999999999998        433 456788999999999999999999999999986433 67888889999999


Q ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370          240 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      .|++++|.+.|++..+.  .+.+...|..+..+|.+.|++++ .. .+++..+..+. +...|..+..++.+.|++++|.
T Consensus       480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~-~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HK-FYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TC-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HH-HHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999873  35577889999999999999999 98 88888776544 6778999999999999999999


Q ss_pred             HHHHHHHhccCCCC-hhhHHHHHHHHHhcCC--------HHHHHHHHHH
Q 015370          320 QIWKSLRMTKQKMT-SRNYICILSSYLMLGH--------LKEVGEIIDQ  359 (408)
Q Consensus       320 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~  359 (408)
                      +.|++..+.  .|+ ...+..+..++...++        +++|.+.+..
T Consensus       555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~  601 (681)
T 2pzi_A          555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA  601 (681)
T ss_dssp             HHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred             HHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence            999977654  454 4456666666655444        4555555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.00  E-value=9.9e-09  Score=100.07  Aligned_cols=174  Identities=8%  Similarity=-0.025  Sum_probs=143.0

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370          203 MSVGQVEKVALVVEEIK--------RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI  274 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~  274 (408)
                      ...|++++|++.+++..        +.. ..+...+..+..++...|++++|.+.|+++.+.  .+.+...|..+..+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence            78899999999999998        432 235677888889999999999999999999873  4567888999999999


Q ss_pred             HcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 015370          275 TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG  354 (408)
Q Consensus       275 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  354 (408)
                      +.|++++|.. .+++..+..+. +...|..+...+.+.|++++ ++.|++..+.... +...|..+..++.+.|++++|.
T Consensus       479 ~~g~~~~A~~-~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATK-HFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHH-HHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999 89888877544 67889999999999999999 9999998876532 5667888999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          355 EIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      +.|++..+..  +.+...|..+..++...|+
T Consensus       555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence            9999987643  2345677778888766555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.99  E-value=1.5e-06  Score=83.79  Aligned_cols=219  Identities=7%  Similarity=-0.037  Sum_probs=139.1

Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA-LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       177 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..+|++.+.. ++-+...|-..+..+...|+.++|. ++|+..... ++.+...|-..+...-+.|++++|.++|+.+.+
T Consensus       329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3444444443 2334455555566666677777775 888877763 333555566667777778888888888888765


Q ss_pred             CC---------CCCC-----------CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc-CC
Q 015370          256 DS---------GGSD-----------DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-GN  314 (408)
Q Consensus       256 ~~---------~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~  314 (408)
                      ..         ..+.           ...+|...+....+.|..+.|.. ++....+..+......|...+..-.+. ++
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~-vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK-IFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            20         0111           12357777777777788888888 787776653322333343332222333 45


Q ss_pred             HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHH
Q 015370          315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD-FDISACNRLLGAFSDVGLTEKANEFH  393 (408)
Q Consensus       315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~  393 (408)
                      .+.|..+|+...+.- .-+...+...++.....|+.+.|..+|++.+...... .....|...+..-.+.|+.+.+..+.
T Consensus       486 ~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          486 TKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            788888888776652 2244445567777777888888888888887653110 13457777777777888888888888


Q ss_pred             HHHHhc
Q 015370          394 MLLLQK  399 (408)
Q Consensus       394 ~~m~~~  399 (408)
                      +++.+.
T Consensus       565 ~R~~~~  570 (679)
T 4e6h_A          565 KRFFEK  570 (679)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.99  E-value=6.9e-08  Score=80.34  Aligned_cols=105  Identities=4%  Similarity=-0.089  Sum_probs=68.3

Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370          239 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                      ..|++++|...|+++.+.  .|.+...+.+....    +.......               .....+...|.+.|++++|
T Consensus       108 ~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A  166 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRLA---------------KYEYSVAEYYTERGAWVAV  166 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHHH---------------HHHHHHHHHHHHHTCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHHH---------------HHHHHHHHHHHHcCcHHHH
Confidence            467889999999998874  23333332221111    00000000               0123456778899999999


Q ss_pred             HHHHHHHHhccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          319 DQIWKSLRMTKQKMT--SRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       319 ~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ...|+++.+......  ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            999999887643211  2457778899999999999999999888754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.98  E-value=4.1e-07  Score=78.78  Aligned_cols=217  Identities=8%  Similarity=-0.012  Sum_probs=128.8

Q ss_pred             hHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hhc---CCHH
Q 015370          140 IHSGERYFEGLPLSAK-TSETYTALLHLYAGAK--WTEKAEELFERVKQSNLSFNALMYNEMMTLY----MSV---GQVE  209 (408)
Q Consensus       140 ~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~  209 (408)
                      .++|+++++.+....| +..+|+.--..+...+  +++++++.++.+.... +-+..+|+.--..+    .+.   ++++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            3567777766555433 3556666666666666  7777777777776654 33455665554444    444   5667


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc------hhh
Q 015370          210 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID--QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH------LVN  281 (408)
Q Consensus       210 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~~  281 (408)
                      +++.+++.+.+...+ +-.+|+--.-.+.+.|+++  +++++++++.+.  .+-+...|+.-...+.+.+.      +++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            777777777765443 5566666656666666666  677777776662  34455666655555555554      566


Q ss_pred             hHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH-HHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 015370          282 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK-IDQIWKSLRMTK--QKMTSRNYICILSSYLMLGHLKEVGEIID  358 (408)
Q Consensus       282 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~  358 (408)
                      +++ .+..+....+. |...|+.+-..+.+.|+... +..+..++...+  -..+...+..+.+.|.+.|+.++|.++++
T Consensus       205 El~-~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELN-YVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-HHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            666 55555554433 66666666666666665333 444555444332  01244455666666666677777777777


Q ss_pred             HHHh
Q 015370          359 QWKQ  362 (408)
Q Consensus       359 ~~~~  362 (408)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.96  E-value=1.4e-07  Score=78.41  Aligned_cols=190  Identities=9%  Similarity=-0.004  Sum_probs=122.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW-VKYV  267 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~  267 (408)
                      +...+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|+..|+++.+...-.+.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4556677788889999999999999999875332 1 13567778889999999999999999988743222221 2344


Q ss_pred             HHHHHHHH------------------cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 015370          268 NLVNIYIT------------------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK  329 (408)
Q Consensus       268 ~li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  329 (408)
                      .+..++.+                  .|+.++|.. .+..+.+..+. +...+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS-DFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHH-HHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH-HHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH---
Confidence            44555544                  345555555 55544443322 12222111100          00000000   


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 015370          330 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLLQKN  400 (408)
Q Consensus       330 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  400 (408)
                           .....+...|.+.|++++|...|+++++.....|. ...+..+..++.+.|++++|.+.++.+...+
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 01124567788999999999999999986421111 2568889999999999999999999988753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=2.6e-08  Score=86.29  Aligned_cols=165  Identities=6%  Similarity=-0.071  Sum_probs=87.1

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH-HH
Q 015370          189 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK-YV  267 (408)
Q Consensus       189 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~  267 (408)
                      +.+...+..+...+...|++++|...|++....... +...+..+...+...|++++|...++++...   .|+... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence            334556666666667777777777777776654322 4556666666777777777777777666552   233322 12


Q ss_pred             HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHh
Q 015370          268 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLM  346 (408)
Q Consensus       268 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~  346 (408)
                      .....+.+.++.++|.. .+.+.....+. +...+..+...+...|++++|.+.|.++.+..... +...+..++..+..
T Consensus       190 ~~~~~l~~~~~~~~a~~-~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQ-QLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHHTSCHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHH-HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            22222444444555555 44444443322 44455555555555555555555555555442211 13344455555555


Q ss_pred             cCCHHHHHHHHHH
Q 015370          347 LGHLKEVGEIIDQ  359 (408)
Q Consensus       347 ~g~~~~A~~~~~~  359 (408)
                      .|+.++|...+++
T Consensus       268 ~g~~~~a~~~~r~  280 (287)
T 3qou_A          268 LGTGDALASXYRR  280 (287)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             cCCCCcHHHHHHH
Confidence            5555555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.95  E-value=2.5e-07  Score=80.17  Aligned_cols=218  Identities=10%  Similarity=0.077  Sum_probs=169.8

Q ss_pred             cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc--ChHHHHHHHhcCCCCC-CCHHHHHHHHHHH----HcC---CC
Q 015370          103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF--GIHSGERYFEGLPLSA-KTSETYTALLHLY----AGA---KW  172 (408)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~----~~~---~~  172 (408)
                      ..++|+++++.+....  +-+...|+.--.++...|  ++++++++++.+.... .+..+|+.--..+    ...   ++
T Consensus        48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            4468999999998864  444567888888888888  8999999998877653 4566776665555    555   78


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE--KVALVVEEIKRKNVVPDIFTYNLWISSCAATLN------ID  244 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~  244 (408)
                      +++++++++++.+.. +-+..+|+.-...+.+.|+++  ++++.++.+.+..+. |...|+-....+.+.++      ++
T Consensus       126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence            999999999999876 558889988888888889888  999999999987665 77888877777777776      88


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh-hHHHHHHHHHHhc--ccCccchHHHHHHHHHhcCCHHHHHHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN-AESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQI  321 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~  321 (408)
                      ++++.++++...  .+-|...|+-+-..+.+.|+... +.. +...+....  ...+...+..+...|.+.|+.++|.++
T Consensus       204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEE-FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHH-HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            899999888873  46788889988888888888555 444 444443322  234667888899999999999999999


Q ss_pred             HHHHHh
Q 015370          322 WKSLRM  327 (408)
Q Consensus       322 ~~~m~~  327 (408)
                      ++.+.+
T Consensus       281 ~~~l~~  286 (306)
T 3dra_A          281 YDLLKS  286 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.95  E-value=1.5e-08  Score=80.88  Aligned_cols=79  Identities=10%  Similarity=-0.040  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          318 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      +...+++..+..+. +...+..+...+...|++++|...|++..+......+...+..+...+...|+.++|...|++.+
T Consensus        93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A           93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            45555555443211 34555566666666666666666666666543111234456666666666666666666666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.95  E-value=3.1e-08  Score=94.66  Aligned_cols=152  Identities=10%  Similarity=-0.035  Sum_probs=93.6

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEEL  179 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~  179 (408)
                      .|++++|++.|++..+..  +.+...+..+...+...|++++|.+.|++..... .+...|..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            366777777777776643  3446677777777777777777777777765553 3467777777777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcC
Q 015370          180 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT---LNIDQVKKFLDEMSCD  256 (408)
Q Consensus       180 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~  256 (408)
                      |++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+..++...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            77777654 335667777777777777777777777777665322 456666677777777   7777777777777663

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=4.8e-09  Score=81.30  Aligned_cols=58  Identities=14%  Similarity=0.016  Sum_probs=23.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .+...|.+.|++++|++.|++..+.. +-+..+|..+...|.+.|++++|...|++..+
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            33344444444444444444443332 22333444444444444444444444444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=8.9e-08  Score=83.81  Aligned_cols=160  Identities=8%  Similarity=-0.013  Sum_probs=82.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHHHHHHH
Q 015370          200 TLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSD-DWVKYVNLV  270 (408)
Q Consensus       200 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li  270 (408)
                      ..|...|++++|...|.+....    |-.+. ..+|+.+...|...|++++|...|++..+-   .|.+. ...++..+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455566666666666554421    11001 234555555666666666666666654331   11111 123455566


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-C----hhhHHHH
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQR-----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-T----SRNYICI  340 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l  340 (408)
                      ..|.+ |++++|+. .+.+........     ...+++.+...|...|++++|++.|++........ +    ...+..+
T Consensus       124 ~~~~~-g~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          124 KLMEP-LDLSKAVH-LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHTT-TCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            66665 66666666 555554432221     12455566666666677777766666654432110 1    1134444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 015370          341 LSSYLMLGHLKEVGEIIDQWK  361 (408)
Q Consensus       341 i~~~~~~g~~~~A~~~~~~~~  361 (408)
                      ...+...|++++|...|++..
T Consensus       202 g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHh
Confidence            555555667777777776665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.92  E-value=3.8e-07  Score=79.14  Aligned_cols=164  Identities=4%  Similarity=-0.112  Sum_probs=100.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHcCchhhhHHHHHHHHHHhccc-Cc----cchHHH
Q 015370          234 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWV----KYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQ----WITYDF  304 (408)
Q Consensus       234 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~~  304 (408)
                      +..+...|++++|..++++..+.....|+..    .+..+...+...+++++|.. .+......... ++    ..+++.
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHhcccccHHHHHHHHHH
Confidence            4556666777777777777665322223321    23345555666667777777 66666653222 12    125677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----cCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCC-HHHHH
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMT-----KQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA---TSDFD-ISACN  374 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~  374 (408)
                      +...|...|++++|...|++..+.     +..+ ...+|..+...|.+.|++++|...+++..+..   ...+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            777777777777777777766531     1111 12256667777888888888888887765421   11122 46777


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHHh
Q 015370          375 RLLGAFSDVGL-TEKANEFHMLLLQ  398 (408)
Q Consensus       375 ~li~~~~~~g~-~~~a~~~~~~m~~  398 (408)
                      .+..+|.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            78888888884 5888888777653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=1.4e-07  Score=77.69  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 015370          175 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----NIDQVKKFL  250 (408)
Q Consensus       175 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~  250 (408)
                      +|++.|++..+.|   ++.++..+...|...+++++|...|++..+.|   +...+..+...|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4666677766665   66777777777777777777777777776654   44555555555555 5    677777777


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHH----cCchhhhHHHHHHHHHHhccc-CccchHHHHHHHHHh----cCCHHHHHHH
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAG----LGNKDKIDQI  321 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~  321 (408)
                      ++..+. +   +...+..|...|..    .+++++|.. .+.+..+.++. .+...+..|...|..    .+++++|...
T Consensus        77 ~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           77 EKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAIT-LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHH-HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            776652 2   45556666666665    566777777 66655544331 124456666666666    6667777777


Q ss_pred             HHHHHhccCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhC
Q 015370          322 WKSLRMTKQKMTSRNYICILSSYLML-G-----HLKEVGEIIDQWKQSA  364 (408)
Q Consensus       322 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~  364 (408)
                      |++..+.+  .+...+..|...|... |     +.++|..+|++..+.|
T Consensus       152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77665541  2333455555555432 2     6777777777776655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.92  E-value=9.9e-09  Score=79.52  Aligned_cols=146  Identities=8%  Similarity=-0.077  Sum_probs=96.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      ...+...|++++|+..++...... +-+...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..++...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            344555677888888887776643 223456667778888888888888888887775432 567777788888888888


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN  314 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  314 (408)
                      ++|...|++..+.  .+.+...+..+...|.+.|+.++|.+..+++..+..+ .+...|......+...|+
T Consensus        82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            8888888887762  3446677777888888888877665513455554433 255566655555555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.90  E-value=4.8e-08  Score=93.36  Aligned_cols=154  Identities=8%  Similarity=-0.042  Sum_probs=117.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          205 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       205 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      .|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.  .+.+...+..+...|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            47899999999998875332 5788889999999999999999999999883  45678889999999999999999999


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 015370          285 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML---GHLKEVGEIIDQWK  361 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~  361 (408)
                       .+++..+..+. +...|..+...|...|++++|.+.|++..+.... +...+..+...+...   |+.++|.+.+++..
T Consensus        79 -~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 -LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             -HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             -HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence             88888776543 6778899999999999999999999998876432 566788899999999   99999999999999


Q ss_pred             hhC
Q 015370          362 QSA  364 (408)
Q Consensus       362 ~~~  364 (408)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=1.3e-07  Score=77.93  Aligned_cols=46  Identities=11%  Similarity=0.112  Sum_probs=19.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 015370          172 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKR  220 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~  220 (408)
                      +.++|.+.|++..+.|   +..++..|...|..    .+++++|...|++..+
T Consensus        68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            4444444444444433   33344444444433    3444444444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.87  E-value=1.5e-07  Score=82.44  Aligned_cols=202  Identities=7%  Similarity=-0.070  Sum_probs=146.4

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                      ..|++++|.+++++..+.. +..   +      +...+++++|...|.+.               ...|...|++++|..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            3577889999998877642 111   0      11157888888888765               456778899999999


Q ss_pred             HHHHHhcC---CCCCC-CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc---C--ccchHHHHHHHHHhcCCHHHHH
Q 015370          249 FLDEMSCD---SGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---R--QWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       249 ~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      .|.+..+.   .+..+ -..+|+.+...|.+.|++++|.. .+.+.......   +  ...+++.+...|.. |++++|+
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ-YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            99876542   11111 13468889999999999999999 88776654221   1  23577888888888 9999999


Q ss_pred             HHHHHHHhccCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 015370          320 QIWKSLRMTKQKM-----TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       320 ~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~  390 (408)
                      +.|++..+.....     ...++..+...|.+.|++++|+..|++..+.....++    ...+..+..++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999876542211     1346778889999999999999999998763211111    236677777888889999999


Q ss_pred             HHHHHHH
Q 015370          391 EFHMLLL  397 (408)
Q Consensus       391 ~~~~~m~  397 (408)
                      ..|++.+
T Consensus       216 ~~~~~al  222 (307)
T 2ifu_A          216 KCVRESY  222 (307)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=8.3e-07  Score=77.00  Aligned_cols=154  Identities=7%  Similarity=-0.109  Sum_probs=73.8

Q ss_pred             HHHHHhhcChHHHHHHHhcCCCCC---CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----hhhHHHH
Q 015370          131 IDLMTKVFGIHSGERYFEGLPLSA---KT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLS-FN----ALMYNEM  198 (408)
Q Consensus       131 i~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~l  198 (408)
                      +..+...|++++|..++++.....   ++    ...+..+...+...+++++|+..|++....... ++    ..+|+.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            455556666666666666544321   11    112333455555555666666666666553211 11    1245666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCC-HHHHHH
Q 015370          199 MTLYMSVGQVEKVALVVEEIKR----K-NVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDD-WVKYVN  268 (408)
Q Consensus       199 i~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~  268 (408)
                      ...|...|++++|+..|++..+    . +..+. ..++..+...|.+.|++++|...+++..+-   .+..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            6666666666666666665542    1 11111 124455555555555555555555544321   011111 334445


Q ss_pred             HHHHHHHcCc-hhhhHH
Q 015370          269 LVNIYITASH-LVNAES  284 (408)
Q Consensus       269 li~~~~~~~~-~~~a~~  284 (408)
                      +..+|.+.|+ +++|.+
T Consensus       242 lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHH
Confidence            5555555552 355544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.80  E-value=1.1e-07  Score=81.99  Aligned_cols=99  Identities=10%  Similarity=-0.106  Sum_probs=55.6

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 015370          191 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV  270 (408)
Q Consensus       191 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li  270 (408)
                      +...+..+...+.+.|++++|...|++....... +...|..+..++.+.|++++|...+++..+.  .+.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            3445555555556666666666666655553221 4455555555666666666666666665552  234455556666


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHh
Q 015370          271 NIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      .+|...|++++|.. .+......
T Consensus        80 ~~~~~~g~~~~A~~-~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIA-NLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHcCCHHHHHH-HHHHHHHh
Confidence            66666666666666 55555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.79  E-value=6.5e-07  Score=73.44  Aligned_cols=126  Identities=13%  Similarity=-0.002  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG  206 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  206 (408)
                      +..+...+...|++++|...|++..  .++..+|..+...|.+.|++++|.+.|++..... +.+..+|..+..+|...|
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence            3444555666666666666666664  2456666666666666666666666666666543 334556666666666666


Q ss_pred             CHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          207 QVEKVALVVEEIKRKNVVPD---------------IFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       207 ~~~~a~~~~~~m~~~g~~p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ++++|...|++..+......               ...+..+..++...|++++|.+.|++..+
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66666666666665422111               13444455555555555555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=8.2e-06  Score=71.49  Aligned_cols=230  Identities=11%  Similarity=-0.006  Sum_probs=121.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      +.+-....+.+..++|++++++++..+ +-+..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.+
T Consensus        58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~  135 (349)
T 3q7a_A           58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            333333344444556666666666654 334455666555555556 366666666666665443 45555555555554


Q ss_pred             c-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh--------hhHHHHHHHHHHhcccCccchHHHHHHHH
Q 015370          240 T-L-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV--------NAESSTLVEAEKSITQRQWITYDFLIILY  309 (408)
Q Consensus       240 ~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~  309 (408)
                      . + ++++++++++++.+.  .+-+..+|+--.-.+.+.|.++        ++++ ...++.+..+. |...|+.....+
T Consensus       136 l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe-~~~k~I~~dp~-N~SAW~~R~~lL  211 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD-WCNEMLRVDGR-NNSAWGWRWYLR  211 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHH
Confidence            4 4 566666666666652  3445555555444444444444        5555 55555554433 566666666655


Q ss_pred             HhcCC-------HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHh
Q 015370          310 AGLGN-------KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL--------------------KEVGEIIDQWKQ  362 (408)
Q Consensus       310 ~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~  362 (408)
                      .+.+.       ++++++.+++.....+. |...|+-+-..+.+.|+.                    .+......++..
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS  290 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence            55554       45666666655554322 444444444444443332                    233333333332


Q ss_pred             hC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015370          363 SA----TSDFDISACNRLLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       363 ~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      ..    ...+....+..|+..|...|+.++|.++++.+.
T Consensus       291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            21    112456666667777777777777777777764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=7.1e-07  Score=73.21  Aligned_cols=91  Identities=14%  Similarity=-0.024  Sum_probs=47.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      +..+...+...|++++|.+.|++..    .|+..+|..+...|.+.|++++|...|++...... .+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence            3444455555555555555555442    33455555555555555555555555555554321 234445555555555


Q ss_pred             cCCHHHHHHHHHHHhc
Q 015370          240 TLNIDQVKKFLDEMSC  255 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~  255 (408)
                      .|++++|.+.|++..+
T Consensus        84 ~~~~~~A~~~~~~al~   99 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALI   99 (213)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH
Confidence            5555555555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.75  E-value=1.6e-07  Score=72.57  Aligned_cols=95  Identities=9%  Similarity=0.043  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015370          301 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF  380 (408)
Q Consensus       301 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~  380 (408)
                      .+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|+..|++..+..  +.+...|..+..+|
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence            3444444444445555555555444443211 33344444444444555555555555444432  12334444444445


Q ss_pred             HhcCChHHHHHHHHHHHh
Q 015370          381 SDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       381 ~~~g~~~~a~~~~~~m~~  398 (408)
                      .+.|++++|...|++.++
T Consensus       115 ~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555544444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.74  E-value=1.5e-06  Score=75.35  Aligned_cols=167  Identities=6%  Similarity=-0.121  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCC--HH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-----FTYNLWISSCAATLNIDQVKKFLDEMSCDSGG--SDD--WV  264 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~  264 (408)
                      .+...+..+...|++++|.+.+++..+.....+.     ..+..+...+...|++++|...+++..+...-  .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444455556666666666666655543221111     12233444556667777777777766542111  111  33


Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHh---ccc-C--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----C
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKS---ITQ-R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-----T  333 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~  333 (408)
                      +|+.+...|...|++++|.. .+.+..+.   .+. +  ...+++.+...|...|++++|.+.+++..+.....     -
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~-~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            66777777777777777777 66666522   111 1  12467777778888888888888887665432111     1


Q ss_pred             hhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015370          334 SRNYICILSSYLMLGHLKEV-GEIIDQWK  361 (408)
Q Consensus       334 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~  361 (408)
                      ..+|..+...|.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            44566777788888888888 66676654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.73  E-value=3.8e-07  Score=74.08  Aligned_cols=159  Identities=8%  Similarity=-0.046  Sum_probs=87.8

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCC-CCHHHHHHHHHHHHHcCc
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGS-DDWVKYVNLVNIYITASH  278 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~-~~~~~~~~li~~~~~~~~  278 (408)
                      ...|++++|.++++.+... ......++..+...+...|++++|...+++....   .+.. ....++..+...|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4567777777755444332 2224566677777777777777777777766541   1111 123446666677777777


Q ss_pred             hhhhHHHHHHHHHHhcc----c--CccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CCh----hhHHHHHHHHHhc
Q 015370          279 LVNAESSTLVEAEKSIT----Q--RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MTS----RNYICILSSYLML  347 (408)
Q Consensus       279 ~~~a~~~~~~~~~~~~~----~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~li~~~~~~  347 (408)
                      +++|.. .+.+......    .  .....+..+...+...|++++|...+++....... .+.    .++..+...+...
T Consensus        82 ~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           82 WDAARR-CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             HHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            777777 5655544311    1  11234556666666677777777776665432111 111    1234555666666


Q ss_pred             CCHHHHHHHHHHHHhh
Q 015370          348 GHLKEVGEIIDQWKQS  363 (408)
Q Consensus       348 g~~~~A~~~~~~~~~~  363 (408)
                      |++++|.+.+++..+.
T Consensus       161 g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          161 KNLLEAQQHWLRARDI  176 (203)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            7777776666665443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.71  E-value=8.1e-07  Score=65.51  Aligned_cols=97  Identities=10%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...|..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|++++|...++++..... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence            4556666666666666666666666666543 33455666666666666666666666666665432 245556666666


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...|++++|...++++.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            6666666666666666655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.70  E-value=2.8e-06  Score=73.68  Aligned_cols=167  Identities=7%  Similarity=-0.052  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV---VPD--IF  228 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~  228 (408)
                      .+...+..+...|++++|.+.+++..+..-..+     ...+..+...+...|++++|+..+++......   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            334445556666667777666666555421110     01233344555666677777777766654211   111  34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh---cCCCCCC--CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-----c
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMS---CDSGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-----Q  298 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~  298 (408)
                      +++.+...|...|++++|...+++..   +..+..+  ...++..+...|.+.|++++|.. .+.+........     -
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~-~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHhcCcHHHH
Confidence            66666777777777777777777665   2111111  11466777777777777777777 666655432211     1


Q ss_pred             cchHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015370          299 WITYDFLIILYAGLGNKDKI-DQIWKSLR  326 (408)
Q Consensus       299 ~~~~~~li~~~~~~~~~~~a-~~~~~~m~  326 (408)
                      ..+|..+...|.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            35667777788888888888 66666543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.70  E-value=1.6e-06  Score=73.41  Aligned_cols=190  Identities=9%  Similarity=-0.083  Sum_probs=131.3

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHHHHH-------HHHHHhhcChHHHHHHHhcCCCCCC-------C---------
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDYATR-------IDLMTKVFGIHSGERYFEGLPLSAK-------T---------  156 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~-------~---------  156 (408)
                      ..++...|.+.|.+..+..  +-....|..+       ...+.+.++..+++..+..-....|       +         
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5788999999999998864  4456777777       5666666666666655554443211       1         


Q ss_pred             ------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HH
Q 015370          157 ------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IF  228 (408)
Q Consensus       157 ------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~  228 (408)
                            ...+-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence                  3345566777888899999999998887754  443366666667888899999998887554421 111  23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhccc
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD--WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ  296 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  296 (408)
                      .+..+..++...|++++|+..|++... ....|.  .........++.+.|+.++|.. .|+++....+.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a~a~~P~  240 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCc
Confidence            566677888888899999888888875 233243  3356677777888888888888 78777766543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.70  E-value=6.3e-07  Score=70.10  Aligned_cols=129  Identities=14%  Similarity=0.001  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...|..+...+...|++++|...|++..... +.+..+|..+...+...|++++|...+++...... .+...+..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            4456666677777777777777777766653 33566677777777777777777777777666432 245566666667


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHH--HHHHHHHHHcCchhhhHHHHHHHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLVNIYITASHLVNAESSTLVEA  290 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~  290 (408)
                      +...|++++|...+++..+.  .+.+...+  ......+.+.|++++|.. .+...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~  143 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHK  143 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHH-cccch
Confidence            77777777777777776653  22233333  233333556666666666 44443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=7.1e-07  Score=69.79  Aligned_cols=127  Identities=13%  Similarity=-0.046  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL  345 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  345 (408)
                      +..+...+...|++++|.. .+.......+. +...|..+...+...|++++|.+.+++..+... .+...+..+...+.
T Consensus        16 ~~~~a~~~~~~~~~~~A~~-~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~   92 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIK-FYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence            4455555666666666666 55555443322 445555666666666666666666666555432 23445556666666


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHH
Q 015370          346 MLGHLKEVGEIIDQWKQSATSDFDISACNR--LLGAFSDVGLTEKANEFHMLLL  397 (408)
Q Consensus       346 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~  397 (408)
                      ..|++++|...+++..+..  +.+...+..  +...+...|++++|.+.+++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            6777777777777666643  223334422  2333556667777766666543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.69  E-value=6.4e-07  Score=66.83  Aligned_cols=97  Identities=9%  Similarity=0.012  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...+......|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~   90 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence            3455566666666666666666666666553 345566666666666666666666666666654322 45556666666


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...|++++|.+.|++..+
T Consensus        91 ~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.69  E-value=1.3e-07  Score=81.60  Aligned_cols=193  Identities=10%  Similarity=0.009  Sum_probs=121.9

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLH  165 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~  165 (408)
                      +...+..+...+.+.|++++|+..|+...+..  +.+...|..+..++.+.|++++|...+++..... .+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677788888899999999999999988864  4467888888889999999999999998877664 46788888899


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID  244 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  244 (408)
                      +|...|++++|...|++..+.+  |+ ...+...+....+.   .++.. +..........+......+ ..+ ..|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence            9999999999999998877643  21 11111122222111   11111 1122222233343333333 222 257888


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc-CchhhhHHHHHHHHHH
Q 015370          245 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA-SHLVNAESSTLVEAEK  292 (408)
Q Consensus       245 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~  292 (408)
                      +|.+.++...+.  .+.+......+...+.+. +.+++|.+ +|..+.+
T Consensus       153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~-~f~~a~~  198 (281)
T 2c2l_A          153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDE-LFSQVDE  198 (281)
T ss_dssp             HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHH-HHHHSSC
T ss_pred             HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHH-HHHhhhc
Confidence            888888777662  233333334444444444 55667777 6655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.66  E-value=1e-06  Score=71.54  Aligned_cols=159  Identities=10%  Similarity=-0.061  Sum_probs=111.8

Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcC
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVVP-DIFTYNLWISSCAATL  241 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g  241 (408)
                      +...|++++|.++++.+... ......++..+...+...|++++|...+++...    .+..| ...++..+...+...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            34678999999966555442 223567888899999999999999999988765    22222 3456777788889999


Q ss_pred             CHHHHHHHHHHHhcC---CCCCC--CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC-c----cchHHHHHHHHHh
Q 015370          242 NIDQVKKFLDEMSCD---SGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAG  311 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~---~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~~li~~~~~  311 (408)
                      ++++|...+++..+.   .+..+  ....+..+...+...|++++|.. .+.+........ +    ..++..+...+..
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ-EYEKSLVYAQQADDQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            999999999987663   12111  23457788889999999999999 777766532221 1    2345677888889


Q ss_pred             cCCHHHHHHHHHHHHh
Q 015370          312 LGNKDKIDQIWKSLRM  327 (408)
Q Consensus       312 ~~~~~~a~~~~~~m~~  327 (408)
                      .|++++|.+.+++..+
T Consensus       160 ~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          160 EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999988886543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.66  E-value=7.6e-07  Score=66.44  Aligned_cols=96  Identities=15%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY  344 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  344 (408)
                      .+......|.+.|++++|+. .+.+..+..+. +...|..+..+|.+.|++++|++.|++..+.... +...|..+..++
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMR-HYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            35555556666666666666 55555444322 4455555555666666666666666655544321 344555555556


Q ss_pred             HhcCCHHHHHHHHHHHHhh
Q 015370          345 LMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       345 ~~~g~~~~A~~~~~~~~~~  363 (408)
                      ...|++++|.+.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            6666666666666665553

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.65  E-value=5.2e-07  Score=66.58  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      +..+...+...|++++|.++|+++... +.+..++..+...+.+.|++++|...|+++.... +.+..++..+...+...
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence            333333344444444444444333222 1233444444455555555555555555544432 22344555555555555


Q ss_pred             CCHHHHHHHHHHHHh
Q 015370          206 GQVEKVALVVEEIKR  220 (408)
Q Consensus       206 g~~~~a~~~~~~m~~  220 (408)
                      |++++|...++++.+
T Consensus        91 ~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           91 GDYDEAIEYYQKALE  105 (125)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            555555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.64  E-value=1.7e-05  Score=69.49  Aligned_cols=215  Identities=11%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc-ChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcC-C-CHHHHHHHH
Q 015370          105 KHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF-GIHSGERYFEGLPLS-AKTSETYTALLHLYAGA-K-WTEKAEELF  180 (408)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~-~-~~~~A~~~~  180 (408)
                      ++|+++++.+....  +-+...|+.--.++...| .+++++++++.+... +.+..+|+.-...+.+. + +.+++++++
T Consensus        71 e~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            34555555555432  222334444444444444 355555555544433 23444454444444443 3 445555555


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 015370          181 ERVKQSNLSFNALMYNEMMTLYMSVGQVE--------KVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-------IDQ  245 (408)
Q Consensus       181 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------~~~  245 (408)
                      +++.+.. +-|..+|+--...+.+.|.++        ++++.++++.+..+. |..+|+-....+.+.++       +++
T Consensus       149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence            5555443 234444444444443333333        555555555554332 44445444444444443       345


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch--------------------hhhHHHHHHHHHHhc-----ccCccc
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL--------------------VNAESSTLVEAEKSI-----TQRQWI  300 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~~-----~~~~~~  300 (408)
                      +++.++++..  ..+-|...|+-+-..+.+.|+.                    ..... +...+....     ..++..
T Consensus       227 ELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~  303 (349)
T 3q7a_A          227 ELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEA-FGFPMPSDPLPEDTPLPVPL  303 (349)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------------CCCCC-CCCSSCCSCCHH
T ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHH-HHHHHHhcccccccCCCcHH
Confidence            5555554444  1234444444444444443332                    11222 222221111     123445


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          301 TYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       301 ~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      .+..|+..|...|+.++|.++++.+.
T Consensus       304 al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          304 ALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55666666666666666776666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.64  E-value=1.1e-06  Score=65.44  Aligned_cols=119  Identities=11%  Similarity=-0.006  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +...+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...++....... .+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence            34556666666666666777766666666543 33555666666666666666666666666665422 23555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH  278 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  278 (408)
                      .+...|++++|...+++..+.  .+.+...+..+..++.+.|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence            666666666666666666552  23344555555555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.63  E-value=1.7e-07  Score=72.33  Aligned_cols=98  Identities=10%  Similarity=-0.061  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +...+..+...+.+.|++++|...|++....+ |.+...|..+..+|...|++++|...|++....... +...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            46677777788888888888888888887765 446777888888888888888888888888775432 4566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhc
Q 015370          236 SCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~  255 (408)
                      +|...|++++|...|++..+
T Consensus       113 ~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888888776

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.61  E-value=9.9e-07  Score=66.00  Aligned_cols=97  Identities=10%  Similarity=-0.025  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+... .+...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence            4555555555555555555555555555543 22445555555555555555555555555554322 134455555555


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...|++++|.+.|++..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.60  E-value=7.9e-07  Score=66.57  Aligned_cols=116  Identities=9%  Similarity=-0.099  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 015370          124 DSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY  202 (408)
Q Consensus       124 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  202 (408)
                      ...+..+...+...|++++|...|++..... .+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            4556666666666677777776666654443 356667777777777777777777777776653 33566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL  241 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  241 (408)
                      .+.|++++|...|++..+.... +...+..+..++...|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            7777777777777777654221 2344444444444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.59  E-value=5.8e-05  Score=70.35  Aligned_cols=205  Identities=12%  Similarity=0.057  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                      +.+..+|++++... +-+...|-..+..+.+.|+.++|..+|++....   |+......   .|....+.++.   ++.+
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l  265 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHH
Confidence            34667788877653 456778888888888889999999999998876   33322111   22222222222   2222


Q ss_pred             hcCC---C-----C---CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh-cCCHHHHHHH
Q 015370          254 SCDS---G-----G---SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LGNKDKIDQI  321 (408)
Q Consensus       254 ~~~~---~-----~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~  321 (408)
                      .+..   .     .   .....+|...+..+.+.+..+.|.. ++... . .+..+...|......-.. .++.+.|..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~-i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~i  342 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK-LFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNI  342 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH-HHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence            2110   0     0   1112446677777777888999999 88887 2 222233334322222222 3479999999


Q ss_pred             HHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          322 WKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       322 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      |+...+.-.. +...+...++...+.|+.+.|..+|++..      .....|...+.--...|+.+.+..+++++.+
T Consensus       343 fe~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          343 FSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9988775322 23345567777788999999999999862      2577888888877888999999998888764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.59  E-value=1.4e-06  Score=69.18  Aligned_cols=122  Identities=11%  Similarity=0.059  Sum_probs=86.5

Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH-HHhcCCH-
Q 015370          238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNK-  315 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~-  315 (408)
                      ...|++++|...+++..+.  .+.+...+..+...|...|++++|.. .+.......+. +...+..+... +...|++ 
T Consensus        21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLL-AYRQALQLRGE-NAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred             hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence            4567788888888877763  34567778888888888888888888 77777665543 55666677777 6677887 


Q ss_pred             -HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          316 -DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       316 -~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                       ++|...+++..+.... +...+..+...+...|++++|...|++..+..
T Consensus        97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence             8888888887766422 45566777778888888888888888887754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.58  E-value=2.5e-07  Score=73.62  Aligned_cols=118  Identities=8%  Similarity=0.016  Sum_probs=63.3

Q ss_pred             cccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHH-HHcCCCH--HHH
Q 015370          101 SQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHL-YAGAKWT--EKA  176 (408)
Q Consensus       101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~-~~~~~~~--~~A  176 (408)
                      .|++++|++.++...+..  +.+...+..+...+...|++++|...|++.... +.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            455555555555555542  334455555555555556666665555554433 2345555555555 5555665  666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          177 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       177 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ...|++....+ +.+...+..+...|...|++++|...|++..+.
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666655543 234555566666666666666666666665553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.58  E-value=7.1e-05  Score=69.76  Aligned_cols=313  Identities=10%  Similarity=-0.004  Sum_probs=158.3

Q ss_pred             CcHHHHHHHHHHcCCCCChhhHHHHHHHHHhccc-HHHHHHHHHHHHhccCC-CCChHHHHHHHHHHH----hhcChHHH
Q 015370           70 RSATNVIQRWVSEGNQATVSELRHILKELRKSQR-YKHALEISEWMVTHKEF-VLSDSDYATRIDLMT----KVFGIHSG  143 (408)
Q Consensus        70 ~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~a  143 (408)
                      +.+..+|++.+..  .|+...|...++-..+.+. .+....+|+.....-+. ..+...|...+..+.    ..++++.+
T Consensus        31 e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v  108 (493)
T 2uy1_A           31 RSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI  108 (493)
T ss_dssp             HHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence            4455556555542  3566666666665555542 23455566665543111 224455555554432    23556666


Q ss_pred             HHHHhcCCCCCCC--HHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--
Q 015370          144 ERYFEGLPLSAKT--SETYTALLHLYAG-------------AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--  206 (408)
Q Consensus       144 ~~~~~~~~~~~~~--~~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--  206 (408)
                      .++|+.....++.  ...|......-..             .+.+..|..+++++...--..+...|...+.--...+  
T Consensus       109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~  188 (493)
T 2uy1_A          109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK  188 (493)
T ss_dssp             HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence            6666665443211  1222222221110             0112223333333332100012234444443322211  


Q ss_pred             C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          207 Q-----VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       207 ~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      -     .+.+..+|+++.... +.+...|...+.-+.+.|+++.|..++++....   +.+...+.    .|....+.++
T Consensus       189 ~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~  260 (493)
T 2uy1_A          189 LGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEA  260 (493)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTH
T ss_pred             CcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhH
Confidence            0     344666777777643 234666666677777788888888888888872   44433332    2222211111


Q ss_pred             hHHHHHHHH--HH------hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-hcCCHHH
Q 015370          282 AESSTLVEA--EK------SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKE  352 (408)
Q Consensus       282 a~~~~~~~~--~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~  352 (408)
                      ..+.+....  ..      .........|...+....+.++.+.|..+|++. .. ...+...|......-. ..++.+.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~  338 (493)
T 2uy1_A          261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT  338 (493)
T ss_dssp             HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence            111011110  00      000112245666666666778899999999987 22 1123333432222212 2347999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          353 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       353 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      |..+|+...+..  +.+...|...++...+.|+.+.|..+|+++
T Consensus       339 ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          339 PYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999988864  224555666777778889999999888875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.58  E-value=2.8e-06  Score=63.14  Aligned_cols=119  Identities=12%  Similarity=-0.099  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 015370          263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS  342 (408)
Q Consensus       263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  342 (408)
                      ...+..+...+...|++++|.. .+.......+ .+...|..+...+...|++++|.+.+++...... .+...+..+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~   88 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVH-FYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHH-HHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence            4455666666667777777777 6666555432 2455666667777777777777777777665532 23556666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 015370          343 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT  386 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  386 (408)
                      .+...|++++|...+++..+..  +.+...+..+..++.+.|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence            7778888888888888777654  33566676777777766654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.57  E-value=3.4e-07  Score=70.55  Aligned_cols=98  Identities=9%  Similarity=-0.062  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +...+..+...+.+.|++++|...|++....+ +.+...|..+..+|...|++++|...|++....... +...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence            34555566666666666666666666666543 335566666666666666666666666666654322 3455555666


Q ss_pred             HHHhcCCHHHHHHHHHHHhc
Q 015370          236 SCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ++...|++++|...|++..+
T Consensus        98 ~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.55  E-value=4.3e-06  Score=70.84  Aligned_cols=197  Identities=8%  Similarity=-0.051  Sum_probs=122.6

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEM-------MTLYMSVGQVEKVALVVEEIKRKNVVPD---------------  226 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~---------------  226 (408)
                      ..++.+.|.+.|.+..... +-....|..+       ...+...++..+++..++.-.+  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            5678888888888887765 3356677766       4555555555555555544433  1221               


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccC--
Q 015370          227 -------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--  297 (408)
Q Consensus       227 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--  297 (408)
                             ....-.+...+...|++++|.++|+.+... +  |+....-.+...+.+.+++++|+. .+....... .|  
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~--p~~~~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~-d~~~  169 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-G--SEHLVAWMKAVVYGAAERWTDVID-QVKSAGKWP-DKFL  169 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-T--CHHHHHHHHHHHHHHTTCHHHHHH-HHTTGGGCS-CHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CchHHHHHHHHHHHHcCCHHHHHH-HHHHhhccC-Cccc
Confidence                   122334556677788888888888877762 2  333355566667888888888888 665322111 11  


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT--SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR  375 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  375 (408)
                      ....+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....   |+...+..
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~~~~a  246 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHH
Confidence            123566677788888888888888887764322143  2244556667778888888888888888753   44444443


Q ss_pred             H
Q 015370          376 L  376 (408)
Q Consensus       376 l  376 (408)
                      |
T Consensus       247 L  247 (282)
T 4f3v_A          247 L  247 (282)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.55  E-value=2e-06  Score=76.16  Aligned_cols=138  Identities=6%  Similarity=-0.178  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHH
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL  305 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  305 (408)
                      +...+..+...+.+.|++++|...|++..+..  +.+..            -..+.+..  ..       +.....|..+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~------------~~~~~~~~--~~-------~~~~~~~~nl  202 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQK--AQ-------ALRLASHLNL  202 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHH--HH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc------------CChHHHHH--HH-------HHHHHHHHHH
Confidence            45677788888888999999999998887732  11200            00011111  00       0012344455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      ..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+..  +.+...+..+..++.+.|+
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
Confidence            55555555555555555555444321 34445555555555555555555555555542  2344455555555555555


Q ss_pred             hHHH
Q 015370          386 TEKA  389 (408)
Q Consensus       386 ~~~a  389 (408)
                      +++|
T Consensus       280 ~~~a  283 (336)
T 1p5q_A          280 QLAR  283 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.54  E-value=1e-06  Score=67.89  Aligned_cols=99  Identities=10%  Similarity=-0.083  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL  341 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  341 (408)
                      +...+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|...|++....... +...+..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHX-VFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHH-HHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence            33444555555666666666666 55555444322 4555555666666666666666666655554321 344455556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhh
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      .+|...|++++|...|++..+.
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            6666666666666666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.53  E-value=2.5e-06  Score=61.53  Aligned_cols=100  Identities=10%  Similarity=-0.005  Sum_probs=81.6

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--CHHHHHH
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNR  375 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~  375 (408)
                      +...|..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+..  +.  +...|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence            456677788888889999999999988777643 256677788888999999999999999988754  34  6788888


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHhcC
Q 015370          376 LLGAFSDV-GLTEKANEFHMLLLQKN  400 (408)
Q Consensus       376 li~~~~~~-g~~~~a~~~~~~m~~~g  400 (408)
                      +..++.+. |++++|.+.+++..+.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            99999999 99999999999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.52  E-value=4.4e-07  Score=73.72  Aligned_cols=149  Identities=4%  Similarity=-0.118  Sum_probs=94.4

Q ss_pred             HHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh----------------h
Q 015370          131 IDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----------------L  193 (408)
Q Consensus       131 i~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~  193 (408)
                      +......|+++.+.+.++.-... ......+..+...+.+.|++++|...|++..... +.+.                .
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence            33445556666666666543321 1245667778888888889999998888887653 1122                6


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY  273 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  273 (408)
                      +|..+..+|.+.|++++|...++....... .+...+..+..++...|++++|...|++..+.  .+.+...+..+..++
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence            777777788888888888888887776532 25667777777788888888888888877662  244566666777777


Q ss_pred             HHcCchhhhH
Q 015370          274 ITASHLVNAE  283 (408)
Q Consensus       274 ~~~~~~~~a~  283 (408)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            7666666665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.51  E-value=3.5e-06  Score=74.59  Aligned_cols=151  Identities=5%  Similarity=-0.086  Sum_probs=110.6

Q ss_pred             cChHHHHHHHhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHH
Q 015370          138 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTL  201 (408)
Q Consensus       138 g~~~~a~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~~li~~  201 (408)
                      +++++|...|+......| +...|..+...+.+.|++++|...|++..... +.+               ..+|..+..+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            345555555554433222 46788888899999999999999999988764 222               4788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          202 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       202 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                      |.+.|++++|...+++..+... .+...|..+..+|...|++++|...|++..+.  .+.+...+..+..++.+.|+.++
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887543 26777888888888888888888888888773  34566778888888888888887


Q ss_pred             hHHHHHHHHHH
Q 015370          282 AESSTLVEAEK  292 (408)
Q Consensus       282 a~~~~~~~~~~  292 (408)
                      |.+-.+..|+.
T Consensus       283 a~~~~~~~~~~  293 (336)
T 1p5q_A          283 REKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            74425555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.50  E-value=5.1e-06  Score=76.18  Aligned_cols=161  Identities=10%  Similarity=-0.009  Sum_probs=77.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFN----------------ALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-VVPD  226 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~  226 (408)
                      ...+.+.|++++|++.|.++.+..-...                ..++..+...|.+.|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3455667778888887777776532111                0135566666777777777776666554311 1112


Q ss_pred             HH----HHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCC-HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc
Q 015370          227 IF----TYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDD-WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ  298 (408)
Q Consensus       227 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  298 (408)
                      ..    +.+.+-..+...|+++.+..+++.....   .+..+. ..++..+...|...|++++|.. ++..........+
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA-LINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSS
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHhcc
Confidence            11    1111222223345566666666554431   111111 2234455555555555555555 4444433222111


Q ss_pred             -----cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          299 -----WITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       299 -----~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                           ...+..++..|...|++++|..++++.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  201 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAA  201 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence                 234444555555555555555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.47  E-value=8.5e-06  Score=59.19  Aligned_cols=97  Identities=9%  Similarity=-0.020  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            4456666677777777777777777776653 33566677777777777777777777777766432 245666666777


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...|++++|...+++..+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            7777777777777777665

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.47  E-value=3.2e-06  Score=66.15  Aligned_cols=99  Identities=14%  Similarity=0.012  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45667777778888888888888888877764 346777788888888888888888888887765432 4667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhcC
Q 015370          236 SCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      ++...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888877663

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.47  E-value=2.3e-06  Score=65.30  Aligned_cols=107  Identities=12%  Similarity=-0.036  Sum_probs=72.9

Q ss_pred             HhcCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015370          147 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP  225 (408)
Q Consensus       147 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  225 (408)
                      |++.....| +...+..+...+.+.|++++|...|++....+ +.+...|..+..+|...|++++|...|+........ 
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-   84 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-   84 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence            444444333 45566667777777788888888887777654 446677777777777788888888888777765432 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          226 DIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...+..+..++...|++++|...|+...+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666677777777888888777777665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.45  E-value=4.9e-05  Score=69.56  Aligned_cols=198  Identities=11%  Similarity=-0.015  Sum_probs=142.0

Q ss_pred             HHHHHhcccHHHHHHHHHHHHhccCCCCC---------------hHHHHHHHHHHHhhcChHHHHHHHhcCCCC--C-CC
Q 015370           95 LKELRKSQRYKHALEISEWMVTHKEFVLS---------------DSDYATRIDLMTKVFGIHSGERYFEGLPLS--A-KT  156 (408)
Q Consensus        95 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~-~~  156 (408)
                      .+.+.+.|++++|++.|..+.+...-..+               ...+..+...|...|++++|.+++..+...  . ++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            45677889999999999999875421111               124778899999999999999998877543  1 11


Q ss_pred             ----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 015370          157 ----SETYTALLHLYAGAKWTEKAEELFERVKQ----SNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NV  223 (408)
Q Consensus       157 ----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~  223 (408)
                          ..+.+.+-..+...|+.++|..++++...    .+..+ -..++..+...|...|++++|..++++....    +-
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence                23344455556677899999999988654    22222 3457888999999999999999999887642    11


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCC--HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          224 VP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDD--WVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       224 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      .+ ...++..++..|...|++++|..++++....   .+.++.  ...+..+...+...+++++|.. .+......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~-~~~~a~~~  245 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS-YFFESFES  245 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH-HHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHH
Confidence            22 2457888889999999999999999876542   111221  2446677778888899999998 67666553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.45  E-value=5.1e-06  Score=61.69  Aligned_cols=96  Identities=10%  Similarity=-0.039  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC  237 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  237 (408)
                      ..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            345555555566666666666666655543 334555666666666666666666666665554321 344555555556


Q ss_pred             HhcCCHHHHHHHHHHHhc
Q 015370          238 AATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~  255 (408)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666666666666655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.43  E-value=4.6e-06  Score=60.68  Aligned_cols=97  Identities=12%  Similarity=-0.035  Sum_probs=55.7

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHL  166 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~  166 (408)
                      ...+..+...+...|++++|.+.|+......  +.+...+..+...+...|++++|...+++..... .+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3445556666666677777777776666543  3345555555566666666666666555544332 235555555555


Q ss_pred             HHcCCCHHHHHHHHHHHHhC
Q 015370          167 YAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~  186 (408)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            55556666666655555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.42  E-value=1.8e-06  Score=65.86  Aligned_cols=100  Identities=13%  Similarity=-0.075  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL  341 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  341 (408)
                      +...+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|...|++....... +...+..+.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQK-IFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHH-HHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence            44556677788888899999988 78877765443 6677888888888899999999998888776432 555677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhC
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      .+|...|++++|...|++..+..
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            88888899999999988887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.40  E-value=0.00015  Score=63.26  Aligned_cols=235  Identities=10%  Similarity=0.020  Sum_probs=129.4

Q ss_pred             HhcccHH-HHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcC----------hHHHHHHHhcCCCC-CCCHHHHHHHHHH
Q 015370           99 RKSQRYK-HALEISEWMVTHKEFVLSDSDYATRIDLMTKVFG----------IHSGERYFEGLPLS-AKTSETYTALLHL  166 (408)
Q Consensus        99 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~ll~~  166 (408)
                      .+.|.++ +|+++++.+....  +-+...|+.--..+...+.          +++++.+++.+... +.+..+|+.-...
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455554 7888888888753  3334455654444444333          46666666665544 3467777776666


Q ss_pred             HHcCC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          167 YAGAK--WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       167 ~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      +.+.+  .+++++.+++++.+.+ +-|..+|+.-...+...|. ++++++.++.+.+..+. |...|+-....+.+.+..
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence            66666  3777777777777765 4466777766666667776 57777777777766543 666666555554443110


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhc-----------
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-----------  312 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------  312 (408)
                      ..+-       ...+               ...+.++++++ .+.......+. |...|+.+-..+.+.           
T Consensus       196 ~~~~-------~~~~---------------~~~~~~~eEle-~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~  251 (331)
T 3dss_A          196 PDSG-------PQGR---------------LPENVLLKELE-LVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKS  251 (331)
T ss_dssp             C-------------C---------------CCHHHHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHH
T ss_pred             cccc-------cccc---------------cchHHHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHH
Confidence            0000       0000               00022344444 44444433322 444454333333332           


Q ss_pred             CCHHHHHHHHHHHHhccCCCChhhHHH--H---HHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          313 GNKDKIDQIWKSLRMTKQKMTSRNYIC--I---LSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~--l---i~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      +.++++++.+.++.+.  .|+. .|..  +   ..+....|..+++...+.++++..
T Consensus       252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence            3466777777777665  3443 2221  1   112224567778888888888743

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.38  E-value=6.6e-06  Score=61.32  Aligned_cols=97  Identities=11%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 015370          158 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--VVPD----IFTYN  231 (408)
Q Consensus       158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~  231 (408)
                      ..+..+...+.+.|++++|+..|++.++.. |-+..+|+.+..+|.+.|++++|+..+++..+..  ..++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            445566666777777777777777766653 3356666777777777777777777776665421  1111    12455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          232 LWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       232 ~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .+..++...|++++|++.|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555666666777777777666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=8e-06  Score=60.61  Aligned_cols=96  Identities=16%  Similarity=0.008  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 015370          264 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS  343 (408)
Q Consensus       264 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  343 (408)
                      ..+..+...+.+.|++++|.. .+.+.....+. +...|..+..++...|++++|+..+++..+.... +...|..+..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVK-AYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            345556666666666666666 66655554332 4556666666666666666666666665554321 34455556666


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 015370          344 YLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       344 ~~~~g~~~~A~~~~~~~~~  362 (408)
                      +...|++++|...|++..+
T Consensus        82 ~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           82 QIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHH
Confidence            6666666666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.38  E-value=1.1e-05  Score=62.39  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----h
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----S  334 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~  334 (408)
                      ++..+...|...|++++|.. .+.+.........     ..++..+...+...|++++|.+.+++..+.... ++    .
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34555556666666666666 5555444322111     135666777777777888777777765443211 11    2


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          335 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF----DISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       335 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ..+..+...+...|++++|...+++..+......    ....+..+...+...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3455677777888888888888887764311111    134567778888888888888888888765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.38  E-value=8.3e-06  Score=63.76  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY  344 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  344 (408)
                      .+..+...+.+.|++++|.. .+.+.....+. +...|..+..+|...|++++|+..|++..+.... +...|..+..+|
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   89 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAID-LYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            34444444444444444444 44444333222 3344444444444455555555555444443211 233444444455


Q ss_pred             HhcCCHHHHHHHHHHHHhh
Q 015370          345 LMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       345 ~~~g~~~~A~~~~~~~~~~  363 (408)
                      ...|++++|...|++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            5555555555555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.36  E-value=8.6e-06  Score=61.30  Aligned_cols=99  Identities=10%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI  234 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  234 (408)
                      .+...|..+...+.+.|++++|...|++..... +.+...|..+...+...|++++|...++...+.... +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            345566666666666666666666666666543 334556666666666666666666666666654322 455566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHhc
Q 015370          235 SSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .++...|++++|...|++..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            666666666666666666544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=0.00077  Score=58.69  Aligned_cols=181  Identities=8%  Similarity=-0.085  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc-hhhhHH
Q 015370          208 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL--NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH-LVNAES  284 (408)
Q Consensus       208 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~  284 (408)
                      +++++.+++.+.....+ +..+|+.-.-.+.+.+  ++++++.+++.+.+.  .+-+..+|+.-.-.+.+.|. .+++++
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            34555555555544332 4444444444444444  245555555555552  23444555544444445554 355555


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhc--------------CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc---
Q 015370          285 STLVEAEKSITQRQWITYDFLIILYAGL--------------GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML---  347 (408)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---  347 (408)
                       .+..+.+..+. |...|+.....+.+.              +.++++++.+.......+. |...|+-+-..+.+.   
T Consensus       167 -~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~  243 (331)
T 3dss_A          167 -FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR  243 (331)
T ss_dssp             -HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG
T ss_pred             -HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc
Confidence             55555544333 555555544444433              3467888888877765432 455555443333333   


Q ss_pred             --------CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHh
Q 015370          348 --------GHLKEVGEIIDQWKQSATSDFDISACNRLLGA-----FSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       348 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~  398 (408)
                              +.++++++.++++.+..   ||. .|..+..+     ....|..+++...++++++
T Consensus       244 ~~~~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          244 CELSVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                    45889999999999854   443 34332222     2246788899999999887

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.1e-05  Score=61.54  Aligned_cols=97  Identities=9%  Similarity=-0.045  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN  231 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  231 (408)
                      +...+..+...+...|++++|...|++..+..  |+    ...|..+...|...|++++|...+++..+... .+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence            34444444444444444444444444444432  22    33444444444444444444444444443311 1233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          232 LWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       232 ~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .+..++...|++++|...|++..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444444444444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.35  E-value=6.5e-06  Score=61.12  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPD----IFTY  230 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~  230 (408)
                      ...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.......  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3456667777777777777777777776654 34566777777777777777777777777665421  111    5566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          231 NLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       231 ~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..+..++...|++++|.+.|++..+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            6666777777777777777777666

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=1.5e-05  Score=59.99  Aligned_cols=101  Identities=8%  Similarity=-0.050  Sum_probs=71.4

Q ss_pred             CCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHH
Q 015370          260 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC  339 (408)
Q Consensus       260 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  339 (408)
                      +.+...+..+...+...|++++|.. .+.......+. +...|..+...+...|++++|...+++..+.... +...+..
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~   82 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAA-CYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF   82 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHH-HHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence            3456667777777888888888887 77766655433 5567777777777788888888877777665422 4556667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          340 ILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       340 li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +..++...|++++|...|++..+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            777777778888888887777653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.34  E-value=8e-06  Score=60.27  Aligned_cols=100  Identities=8%  Similarity=-0.095  Sum_probs=75.3

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA  379 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  379 (408)
                      ..+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+..  +.+...|..+..+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~   94 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS   94 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            34556677778888888888888887776432 56667778888888888888988888888764  3467778888888


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCC
Q 015370          380 FSDVGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       380 ~~~~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      +...|++++|...+++.++  ..|+
T Consensus        95 ~~~~g~~~~A~~~~~~al~--~~P~  117 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLL--SQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHcCCHHHHHHHHHHHHH--hCcC
Confidence            8888888898888888876  4444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=7.7e-06  Score=58.83  Aligned_cols=99  Identities=9%  Similarity=-0.099  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWI  234 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll  234 (408)
                      +...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.... .+...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            34455666666666677777777776666543 334556666666666666666666666666654211 0355566666


Q ss_pred             HHHHhc-CCHHHHHHHHHHHhc
Q 015370          235 SSCAAT-LNIDQVKKFLDEMSC  255 (408)
Q Consensus       235 ~~~~~~-g~~~~a~~~~~~~~~  255 (408)
                      .++... |++++|.+.++...+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhh
Confidence            666666 666666666666665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.32  E-value=1.4e-05  Score=64.72  Aligned_cols=175  Identities=9%  Similarity=-0.036  Sum_probs=87.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCch
Q 015370          200 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL  279 (408)
Q Consensus       200 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  279 (408)
                      ......|+++++.+.++.-..... .....+..+...+...|++++|...|++..+.....++....           ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------~~   79 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-----------IL   79 (198)
T ss_dssp             ----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-----------HH
T ss_pred             hhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-----------hH
Confidence            333444555555555542222100 123445555666666777777777777666532111111000           00


Q ss_pred             hhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          280 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       280 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      ..-..           ......|..+..+|...|++++|+..+++..+... .+...+..+..+|...|++++|...|++
T Consensus        80 ~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           80 LDKKK-----------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            00000           00124566677777777888888888777766532 2455677777778888888888888888


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcC
Q 015370          360 WKQSATSDFDISACNRLLGAFSDVGLTEKAN-EFHMLLLQKN  400 (408)
Q Consensus       360 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g  400 (408)
                      ..+..  +.+...+..+..++...++.+++. ..+..|...|
T Consensus       148 al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          148 AASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHS--TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77654  335666777777777766666665 4555554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3.1e-05  Score=58.84  Aligned_cols=98  Identities=8%  Similarity=-0.079  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 015370          123 SDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM  198 (408)
Q Consensus       123 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  198 (408)
                      +...+..+...+...|++++|...|++.....|+    ...|..+..+|...|++++|...+++..... +.+...|..+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~  105 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR  105 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence            4456666667777777777777777766655554    5666677777777777777777777766653 3355666777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC
Q 015370          199 MTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       199 i~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ..++...|++++|...|++....
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777777777777777776654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.31  E-value=2.3e-06  Score=63.69  Aligned_cols=96  Identities=7%  Similarity=0.035  Sum_probs=54.8

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC----C----HHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK----T----SETY  160 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~  160 (408)
                      ..+..+...+...|++++|+..|+...+..  +.+...+..+...+...|++++|...|++.....|    +    ..+|
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            445566666667777777777777766643  33455555666666666666666666555433211    1    4455


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQS  186 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~~  186 (408)
                      ..+..++.+.|++++|.+.|++..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            55555555555555555555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.29  E-value=2.9e-05  Score=57.80  Aligned_cols=50  Identities=8%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          233 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       233 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      +...+.+.|++++|++.|++..+.  .|.+...|..+..+|.+.|++++|+.
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~   63 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQ   63 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHH
Confidence            333444444444444444443331  12233334444444444444444444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.25  E-value=1.9e-05  Score=73.09  Aligned_cols=150  Identities=5%  Similarity=-0.036  Sum_probs=107.5

Q ss_pred             ChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHH
Q 015370          139 GIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTLY  202 (408)
Q Consensus       139 ~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------~~~~~~li~~~  202 (408)
                      ++++|...|+...... .....|..+...+.+.|++++|...|++.++.. +.+               ..+|..+..+|
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555554433222 246678888899999999999999999988753 122               47888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      .+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.  .+.+...+..+..++.+.++.+++
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888876432 5777888888888999999999999888873  344566778888888888888877


Q ss_pred             HHHHHHHHHH
Q 015370          283 ESSTLVEAEK  292 (408)
Q Consensus       283 ~~~~~~~~~~  292 (408)
                      .+..+..|+.
T Consensus       405 ~~~~~~~~f~  414 (457)
T 1kt0_A          405 DRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHh
Confidence            7534444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.25  E-value=1.4e-05  Score=58.97  Aligned_cols=94  Identities=11%  Similarity=-0.084  Sum_probs=56.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA  239 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  239 (408)
                      +..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            3444555666666666666666666543 335566666666666666666666666666654322 44555566666666


Q ss_pred             cCCHHHHHHHHHHHhc
Q 015370          240 TLNIDQVKKFLDEMSC  255 (408)
Q Consensus       240 ~g~~~~a~~~~~~~~~  255 (408)
                      .|++++|...+++..+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           98 EHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.19  E-value=6.7e-06  Score=60.23  Aligned_cols=87  Identities=13%  Similarity=-0.042  Sum_probs=56.2

Q ss_pred             cCchhhhHHHHHHHHHHhc--ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 015370          276 ASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV  353 (408)
Q Consensus       276 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  353 (408)
                      .|++++|+. .+.+..+.+  .+.+...|..+...|...|++++|.+.|++..+.... +...+..+..++...|++++|
T Consensus         3 ~g~~~~A~~-~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVP-YYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHH-HHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHH-HHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            466677777 666666543  2234566677777777777777777777777665432 455666677777777888888


Q ss_pred             HHHHHHHHhhC
Q 015370          354 GEIIDQWKQSA  364 (408)
Q Consensus       354 ~~~~~~~~~~~  364 (408)
                      ...+++..+..
T Consensus        81 ~~~~~~al~~~   91 (117)
T 3k9i_A           81 VELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            88777777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.18  E-value=5e-05  Score=56.27  Aligned_cols=97  Identities=10%  Similarity=0.003  Sum_probs=66.0

Q ss_pred             HHHHHHHHHcCchhhhHHHHHHHHHHhcccCcc--chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC--hhhHHHHHH
Q 015370          267 VNLVNIYITASHLVNAESSTLVEAEKSITQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT--SRNYICILS  342 (408)
Q Consensus       267 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~  342 (408)
                      ..+...+.+.|++++|.. .+..+....+....  ..+..+...+...|++++|...|++.........  ...+..+..
T Consensus         6 ~~~a~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQ-LFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHH-HHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHH-HHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            345667777888888888 77777665443211  4666677777788888888888887766542211  344666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhC
Q 015370          343 SYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       343 ~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ++...|++++|...|+++.+..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC
Confidence            7778888888888888877753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.18  E-value=1.8e-05  Score=61.05  Aligned_cols=26  Identities=12%  Similarity=0.211  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          337 YICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       337 ~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +..+...+...|++++|.+.+++..+
T Consensus       132 ~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          132 CWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            33444555555555555555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.18  E-value=2.9e-06  Score=62.20  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015370          170 AKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK  247 (408)
Q Consensus       170 ~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  247 (408)
                      .|++++|+..|++..+.+  -+.+..+|..+...|...|++++|...|++..+.... +..++..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            355556666666655542  1223445555555666666666666666665554322 3445555555566666666666


Q ss_pred             HHHHHHhc
Q 015370          248 KFLDEMSC  255 (408)
Q Consensus       248 ~~~~~~~~  255 (408)
                      ..+++...
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.14  E-value=0.00011  Score=54.33  Aligned_cols=93  Identities=8%  Similarity=-0.075  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISS  236 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~  236 (408)
                      .+...+.+.|++++|...|++..+.. +.+.   ..+..+..++.+.|++++|...|+..........  ...+..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            34455666677777777777666543 1222   3566666666677777777777776665432210  4455556666


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      +...|++++|...|+++.+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6667777777777766665

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.11  E-value=4.4e-05  Score=68.37  Aligned_cols=125  Identities=10%  Similarity=-0.029  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQS---------------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ...|..+...+.+.|++++|++.|++.++.               --+.+..+|..+..+|.+.|++++|+..+++..+.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            445777888888899999999988887761               01223456777777777777777777777777765


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          222 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       222 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      .. .+...+..+..+|...|++++|...|++..+.  .+.+...+..+...+.+.++.+++.+
T Consensus       303 ~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            32 24566777777777777777777777777662  23455566666666666666665554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.10  E-value=1.8e-05  Score=61.70  Aligned_cols=98  Identities=12%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CC----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQS-------NL----------SFNALMYNEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-------~~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      ...+......+.+.|++++|+..|.+....       +-          +.+...|..+..+|.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666667777777777777777776553       00          1133567777777777888888888877777


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          220 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       220 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      .... .+...|..+..++...|++++|...|++...
T Consensus        91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            6532 2566777777777778888888877777766

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.09  E-value=4.6e-05  Score=70.46  Aligned_cols=125  Identities=6%  Similarity=-0.167  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------------HHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          227 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-------------WVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       227 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      ...+..+...+.+.|++++|...|++..+.....++             ...|..+..+|.+.|++++|+. .+.+....
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~-~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE-CCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhc
Confidence            445666677777777888887777777662111111             3445555555555555555555 45544443


Q ss_pred             cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 015370          294 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG  354 (408)
Q Consensus       294 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  354 (408)
                      .+. +...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.++|.
T Consensus       347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            322 3444555555555555555555555554443211 2333444444455555544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.09  E-value=2.8e-05  Score=72.29  Aligned_cols=120  Identities=13%  Similarity=-0.003  Sum_probs=84.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      ...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.... +..++..+..+|...|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence            344567788888888888887764 345778888888888888888888888888876432 567777788888888888


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHHcCchhhhHHHHHH
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVKYVNLVNI--YITASHLVNAESSTLV  288 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~  288 (408)
                      ++|.+.|++..+..  +.+...+..+..+  +.+.|++++|.+ .++
T Consensus        91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~-~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIA-GDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence            88888888877632  2333444455444  777888888888 555

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.04  E-value=3.3e-05  Score=69.19  Aligned_cols=139  Identities=9%  Similarity=-0.032  Sum_probs=91.6

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA  168 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~  168 (408)
                      ..+..+...+.+.|++++|++.|++..+.-   +...          .....+.+..    +  .+.+..+|..+..+|.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~----~--~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK----L--QPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG----G--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH----H--HHHHHHHHHHHHHHHH
Confidence            346677788888889999988888887631   1100          0001111110    0  0134677778888888


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK  248 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  248 (408)
                      +.|++++|++.+++.++.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.+
T Consensus       285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888764 346677888888888888888888888887765322 55666666666666776666544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.03  E-value=6e-05  Score=58.65  Aligned_cols=100  Identities=9%  Similarity=0.057  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc-----------------ccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          263 WVKYVNLVNIYITASHLVNAESSTLVEAEKSI-----------------TQRQWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       263 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      ...+......+.+.|++++|.. .+.......                 .+.+...|..+..+|.+.|++++|+..+++.
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~-~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAID-AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4557788888999999999999 888776651                 1223467888888888999999999999888


Q ss_pred             HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          326 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       326 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      .+... .+...|..+..+|...|++++|...|++..+..
T Consensus        90 l~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           90 LKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            77642 256678888888999999999999999888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.01  E-value=0.00019  Score=68.00  Aligned_cols=173  Identities=8%  Similarity=0.011  Sum_probs=139.1

Q ss_pred             cHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcC----------hHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCC
Q 015370          103 RYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFG----------IHSGERYFEGLPLS-AKTSETYTALLHLYAGAK  171 (408)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~  171 (408)
                      .-++|++.++.+.+..  +-+...|+.--.++...|+          ++++++.++.+... +.+..+|+.-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            4568899999999864  4456678877777777777          89999999988766 467889999999999999


Q ss_pred             --CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 015370          172 --WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT--------  240 (408)
Q Consensus       172 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------  240 (408)
                        +++++++.++++.+.+ +-|..+|+.-...+.+.| .++++++.++++.+..+. |..+|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              7799999999999987 458889999888888999 899999999999987654 788888877776663        


Q ss_pred             ------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhh
Q 015370          241 ------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN  281 (408)
Q Consensus       241 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  281 (408)
                            +.++++.+.+++....  .+.+...|.-+-..+.+.++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence                  5578888888888763  45677778888777777776443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.00  E-value=2.4e-05  Score=72.75  Aligned_cols=88  Identities=11%  Similarity=-0.003  Sum_probs=43.1

Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD  316 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  316 (408)
                      +.+.|++++|.+.+++..+.  .+.+...|..+..+|.+.|++++|.. .+++..+..+ .+...|..+..+|...|+++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALG-DATRAIELDK-KYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence            34455555555555555542  23334445555555555555555555 4444444322 13444445555555555555


Q ss_pred             HHHHHHHHHHhc
Q 015370          317 KIDQIWKSLRMT  328 (408)
Q Consensus       317 ~a~~~~~~m~~~  328 (408)
                      +|.+.|++..+.
T Consensus        92 eA~~~~~~al~~  103 (477)
T 1wao_1           92 AALRDYETVVKV  103 (477)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555544443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.95  E-value=0.0002  Score=54.82  Aligned_cols=97  Identities=9%  Similarity=-0.105  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM------T-----SRNYICILSSYLMLGHLKEVGEIIDQWKQS----ATS  366 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~  366 (408)
                      +......+.+.|++++|++.|++..+.....      +     ...|..+..++.+.|++++|+..+++.++.    +..
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344555666677777777777665543221      1     126777777888888888888888887764    112


Q ss_pred             CC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          367 DF-DISAC----NRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       367 ~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .| +...|    .....++...|++++|+..|++.++
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34 45577    7888888888999999988888876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.93  E-value=5.9e-05  Score=69.88  Aligned_cols=99  Identities=9%  Similarity=-0.063  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQ-------SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNVV  224 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~  224 (408)
                      ..+++.|..+|...|++++|+.++++.++       .+.+-...+++.|...|...|++++|+.++++...     .|..
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34555555555555555555555554432       11111233566666666666666666666655432     1211


Q ss_pred             -CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          225 -PD-IFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       225 -p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                       |+ ..+...+-.++...+.+++|+.++..+.+
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11 22334444455556666666666666554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.89  E-value=5.6e-05  Score=66.82  Aligned_cols=148  Identities=11%  Similarity=-0.016  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...|+++++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            5567778888888899999999998877653  33321       111222222221110          1244445555


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH-HHhcCCH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGNK  315 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~  315 (408)
                      +.+.|++++|+..+++..+.  .+.+...|..+..+|...|++++|.. .+....+..+. +...+..+... ....+..
T Consensus       240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPD-DKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555442  23344455555555555555555555 44444332221 23333333333 1223445


Q ss_pred             HHHHHHHHHHHh
Q 015370          316 DKIDQIWKSLRM  327 (408)
Q Consensus       316 ~~a~~~~~~m~~  327 (408)
                      +++..+|..|..
T Consensus       316 ~~a~~~~~~~l~  327 (338)
T 2if4_A          316 QKQKEMYKGIFK  327 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHhhC
Confidence            555555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.86  E-value=8.8e-05  Score=56.78  Aligned_cols=107  Identities=8%  Similarity=0.001  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYA  168 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~  168 (408)
                      ..+......+.+.|++++|++.|++..+..+-.|+.                       +.+...+.+...|+.+..++.
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------------~a~~~~~~~a~a~~n~g~al~   68 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------------EAFDHAGFDAFCHAGLAEALA   68 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------------SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------------hhhhhccchHHHHHHHHHHHH
Confidence            344555566666677777777777666643111111                       000000012336777777777


Q ss_pred             cCCCHHHHHHHHHHHHhC-------CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQS-------NLSFNALMY----NEMMTLYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~-------~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~  219 (408)
                      +.|++++|+..+++.++.       + +-+...|    .....++...|++++|+..|++..
T Consensus        69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           69 GLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            777777777777766654       3 2234456    666666666777777777666654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.84  E-value=7.5e-05  Score=69.15  Aligned_cols=124  Identities=4%  Similarity=-0.135  Sum_probs=73.1

Q ss_pred             cCCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHH
Q 015370          169 GAKWTEKAEELFERVKQS---NLSF----NALMYNEMMTLYMSVGQVEKVALVVEEIKR-----KNV-VPD-IFTYNLWI  234 (408)
Q Consensus       169 ~~~~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~ll  234 (408)
                      ..|++++|+.++++.++.   -+.|    ...+++.|..+|...|++++|+.++++...     .|. -|+ ..+++.|.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            456677777666665432   1111    234677777777777777777777766542     121 122 35667777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcC----CC--CCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          235 SSCAATLNIDQVKKFLDEMSCD----SG--GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       235 ~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                      ..|...|++++|+.++++..+-    .|  .+....+.+.+..++...+.+++|.. ++..+.+.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~~~  464 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-MYHKMREA  464 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            7777777777777776655321    11  11223335566666777777777777 66666553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.84  E-value=0.00031  Score=52.97  Aligned_cols=111  Identities=11%  Similarity=-0.015  Sum_probs=66.3

Q ss_pred             ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHc----CCCHHHHH
Q 015370          102 QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAE  177 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~  177 (408)
                      +++++|++.|++..+.|  .|+..    +...|...+.+++|.++|++.... .+...+..|...|..    .++.++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46667777777777665  33322    445555555566666666655442 455566666666655    56666666


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 015370          178 ELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKN  222 (408)
Q Consensus       178 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  222 (408)
                      +.|++..+.|   ++.++..|...|..    .+++++|...|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666666655   45566666666665    566666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.83  E-value=0.00099  Score=63.12  Aligned_cols=139  Identities=8%  Similarity=-0.060  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC--chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcC-CHHHHH
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS--HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG-NKDKID  319 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~  319 (408)
                      ++++.+.++.+.+.  .+-+..+|+.-.-.+.+.+  ++++++. .+.++.+..+. +..+|+.-...+.+.| .+++++
T Consensus        89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~-~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el  164 (567)
T 1dce_A           89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELE-LCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL  164 (567)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHH-HHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHH
Confidence            44444444444441  2334444444444444444  3355555 44444444322 4455555444445555 555555


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHh--------------cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          320 QIWKSLRMTKQKMTSRNYICILSSYLM--------------LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       320 ~~~~~m~~~~~~p~~~~~~~li~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      +.++++.+..+. |...|+.....+.+              .+.++++++.+++.+...  +-|...|+-+-..+.+.++
T Consensus       165 ~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCC
Confidence            555555443322 33344433333332              255788999999888764  4577888888887777776


Q ss_pred             hHH
Q 015370          386 TEK  388 (408)
Q Consensus       386 ~~~  388 (408)
                      .++
T Consensus       242 ~~~  244 (567)
T 1dce_A          242 HDV  244 (567)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.82  E-value=2.5e-05  Score=56.18  Aligned_cols=92  Identities=8%  Similarity=-0.030  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-------IF  228 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~  228 (408)
                      +...|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|...+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            34566667777777777777777777776653 3456677777777777777777777777777643  33       33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q 015370          229 TYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      .+..+..++...|+.+.+...+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            3444444555555544444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.80  E-value=2.5e-05  Score=69.10  Aligned_cols=94  Identities=10%  Similarity=-0.051  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISS-  236 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~-  236 (408)
                      +|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|++..+.  .|+ ...+..+... 
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence            56666666666666666666666666543 335556666666666666666666666666543  222 2223322222 


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 015370          237 CAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~  255 (408)
                      ....+..+.+...|..|..
T Consensus       309 ~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          309 EQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            1223344455555555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.76  E-value=0.00013  Score=52.90  Aligned_cols=78  Identities=8%  Similarity=-0.021  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          176 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       176 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      |+..|++..+.. +.+...|..+...|...|++++|...|++...... .+...|..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555443 33455555666666666666666666666555422 1344555555566666666666666655544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.67  E-value=0.00023  Score=51.53  Aligned_cols=64  Identities=9%  Similarity=-0.128  Sum_probs=32.0

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +...|..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++..+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444555555555555555555555444321 1233444555555555555555555555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00041  Score=49.55  Aligned_cols=92  Identities=7%  Similarity=-0.146  Sum_probs=67.7

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC------H
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD------W  263 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~  263 (408)
                      ++...|..+...+...|++++|...|++..+... .+...+..+..++...|++++|.+.+++..+.  .+.+      .
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~   78 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS   78 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence            3567788888889999999999999998887543 26777888888889999999999999988873  2223      4


Q ss_pred             HHHHHHHHHHHHcCchhhhHH
Q 015370          264 VKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       264 ~~~~~li~~~~~~~~~~~a~~  284 (408)
                      ..+..+..++...|+.+.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHh
Confidence            445556666666666655554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.65  E-value=0.00066  Score=46.37  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|...+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3445555555555555555555555555442 224445555555555555555555555555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.60  E-value=0.0028  Score=55.55  Aligned_cols=134  Identities=11%  Similarity=-0.044  Sum_probs=67.6

Q ss_pred             cCCCCChhhHHHHHHHHHhc-----ccHHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhh---c--------ChHHHH
Q 015370           82 EGNQATVSELRHILKELRKS-----QRYKHALEISEWMVTHKEFVLS-DSDYATRIDLMTKV---F--------GIHSGE  144 (408)
Q Consensus        82 ~g~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g--------~~~~a~  144 (408)
                      .+.+.+...|...+++....     ....+|..+|++..+..   |+ ...|..+.-++...   +        ....+.
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            33566777777777665432     34578888888888753   44 34444433333210   0        001111


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          145 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      +-...+...+.+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|++...
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            1111122213345555555444444455555555555555543  4444555555555555555555555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.59  E-value=0.0017  Score=48.82  Aligned_cols=109  Identities=8%  Similarity=-0.064  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh----cCCHHH
Q 015370          242 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDK  317 (408)
Q Consensus       242 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~  317 (408)
                      ++++|.+.|++..+. + .+...    |...|...+.+++|.+ .+++..+.+   +...+..|...|..    .+++++
T Consensus        10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~-~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A           10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQ-YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHH-HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHH-HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            455555555555542 3 12211    4444444445555555 444443332   33344444444444    445555


Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 015370          318 IDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~  363 (408)
                      |.+.|++..+.|   +...+..|...|..    .++.++|..+|++..+.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            555555444432   23334444444444    44555555555544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.58  E-value=0.00096  Score=45.52  Aligned_cols=82  Identities=13%  Similarity=0.031  Sum_probs=56.2

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          299 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      ...|..+...+...|++++|...+++..+... .+...+..+...+.+.|++++|...+++..+..  +.+...+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~   85 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence            44566677777778888888888877766532 245566777778888888888888888877754  335566666665


Q ss_pred             HHHhc
Q 015370          379 AFSDV  383 (408)
Q Consensus       379 ~~~~~  383 (408)
                      ++.+.
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.54  E-value=0.00039  Score=48.94  Aligned_cols=64  Identities=14%  Similarity=0.008  Sum_probs=35.6

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +...|..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3344555555566666666666666655554322 334455556666666666666666665544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.54  E-value=0.00062  Score=51.98  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=73.3

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEE  178 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~  178 (408)
                      .+.+.+++|++.++...+..  +.+...|..+..++...++++.+....+                       .+++|+.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~-----------------------~~~eAi~   67 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQ-----------------------MIQEAIT   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHH-----------------------HHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHh-----------------------HHHHHHH
Confidence            45567888888888888764  5567788878888888777654443221                       2677777


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          179 LFERVKQSNLSFNALMYNEMMTLYMSVG-----------QVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       179 ~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      .|++.++.+ +-+..+|..+..+|...|           ++++|.+.|++..+  +.|+...|..-+.
T Consensus        68 ~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~  132 (158)
T 1zu2_A           68 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            777777764 335667777777777654           67777777777776  3455555544443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.48  E-value=0.00014  Score=55.55  Aligned_cols=88  Identities=9%  Similarity=0.005  Sum_probs=59.1

Q ss_pred             HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH----------HHHHHHHHHHHhccCCCChhhHHHHHH
Q 015370          273 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK----------DKIDQIWKSLRMTKQKMTSRNYICILS  342 (408)
Q Consensus       273 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~  342 (408)
                      ..+.+.+++|.. .++...+..+. +...|+.+..++...+++          ++|+..|++..+.... +...|..+..
T Consensus        12 ~~r~~~feeA~~-~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~   88 (158)
T 1zu2_A           12 FDRILLFEQIRQ-DAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHhHHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence            445667777777 67766665544 667777777777777654          4777777776665332 4556777777


Q ss_pred             HHHhcC-----------CHHHHHHHHHHHHhh
Q 015370          343 SYLMLG-----------HLKEVGEIIDQWKQS  363 (408)
Q Consensus       343 ~~~~~g-----------~~~~A~~~~~~~~~~  363 (408)
                      +|...|           ++++|++.|++.++.
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            776653           677777777777764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.43  E-value=0.026  Score=55.96  Aligned_cols=118  Identities=10%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             HhhcChHHHHH-HHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015370          135 TKVFGIHSGER-YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL  213 (408)
Q Consensus       135 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  213 (408)
                      ...+++++|.+ ++..++    +......++..+.+.|..++|.++.++-.            .-.......|++++|++
T Consensus       610 ~~~~~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~  673 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD  673 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence            34566666666 544332    12222555666666666666665542111            01223345666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHH
Q 015370          214 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES  284 (408)
Q Consensus       214 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  284 (408)
                      +.+.+      .+...|..+...+.+.++++.|++.|.++.+          |..+...|...|+.+...+
T Consensus       674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~  728 (814)
T 3mkq_A          674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVT  728 (814)
T ss_dssp             HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHH
Confidence            64322      2456666677777777777777777766554          3344444555555554444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.41  E-value=0.0005  Score=48.39  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          155 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .+...+..+...|.+.|++++|+..|++..+.+ +.+..+|..+..+|...|++++|...|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345666667777777777777777777766654 33455666677777777777777777666553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.99  E-value=0.0037  Score=56.83  Aligned_cols=88  Identities=5%  Similarity=-0.049  Sum_probs=62.7

Q ss_pred             hcCCHHHHHHHHHHHHhcc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCCH-HHHHHHH
Q 015370          311 GLGNKDKIDQIWKSLRMTK---QKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQ-----SATSDFDI-SACNRLL  377 (408)
Q Consensus       311 ~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~li  377 (408)
                      ..|++++|+.++++..+..   +.|+    ..+++.|...|...|++++|+.++++..+     .|...|++ .+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3567888888887765431   2222    24577788888888999988888888754     23333443 4688888


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 015370          378 GAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       378 ~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ..|...|++++|..++++.++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            888889999999888887754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.98  E-value=0.0015  Score=59.43  Aligned_cols=83  Identities=11%  Similarity=-0.039  Sum_probs=52.7

Q ss_pred             hcChHHHHHHHhcCCCC-----CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCC-ChhhHHHHHH
Q 015370          137 VFGIHSGERYFEGLPLS-----AKT----SETYTALLHLYAGAKWTEKAEELFERVKQS-----N-LSF-NALMYNEMMT  200 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~-----~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li~  200 (408)
                      .|++++|+.++++....     +++    ..+++.|..+|...|++++|+.++++.++.     | -.| ...+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            35566666665542211     222    466777788888888888887777776532     2 112 2346777777


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 015370          201 LYMSVGQVEKVALVVEEIK  219 (408)
Q Consensus       201 ~~~~~g~~~~a~~~~~~m~  219 (408)
                      .|...|++++|+.+|++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            7888888888877777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.96  E-value=0.003  Score=57.48  Aligned_cols=62  Identities=8%  Similarity=-0.024  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQS-----N--LSFNALMYNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      ..+++.|..+|...|++++|+.++++.+..     |  .+-...+++.|...|...|++++|+.++++.
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            344555555555555555555555544321     1  1111234555555555555555555555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.90  E-value=0.0068  Score=55.15  Aligned_cols=93  Identities=11%  Similarity=-0.026  Sum_probs=56.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCCH-HH
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMTK---QKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQ-----SATSDFDI-SA  372 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~  372 (408)
                      +..+.+.|++++|+.++++..+..   +.|+    ..+++.+...|...|++++|+.++++..+     .|...|++ .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334456677777777777665431   1222    23466677777777777777777776653     12223332 35


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          373 CNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       373 ~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            67777777777777777777776543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.88  E-value=0.0025  Score=44.36  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=40.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          305 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       305 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      ....+...|++++|.+.|++..+.... +.. .+..+..+|...|++++|...|++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            344566777888888888777665322 344 66667777777888888888888877754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.86  E-value=0.028  Score=49.32  Aligned_cols=73  Identities=16%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHH
Q 015370          296 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC  373 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  373 (408)
                      +.+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++....   .|...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChH
Confidence            3455666666666666788888888888777764  66666666777777788888888888877764   3555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.82  E-value=0.0039  Score=43.32  Aligned_cols=57  Identities=16%  Similarity=0.084  Sum_probs=35.2

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ...+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            344556666666666666666543 23445 6666666666666666666666666654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.82  E-value=0.083  Score=38.51  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=39.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370          333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  401 (408)
                      +...+...++.+...|+-++-.+++.++...  .+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            3444555566666666666666666664332  245555566666666666666666666666666664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.70  E-value=0.014  Score=44.09  Aligned_cols=82  Identities=9%  Similarity=-0.082  Sum_probs=53.4

Q ss_pred             hhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHH
Q 015370          279 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEV  353 (408)
Q Consensus       279 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A  353 (408)
                      ...+.+ .+.+....+. ++..+...+..++++.+   +.+++..+++...+.. .|  ....+-.+.-+|.+.|++++|
T Consensus        14 l~~~~~-~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEK-KFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHH-HHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHH-HHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            444555 4444444333 46666667777777777   5668888888777764 24  233444566667888888888


Q ss_pred             HHHHHHHHhh
Q 015370          354 GEIIDQWKQS  363 (408)
Q Consensus       354 ~~~~~~~~~~  363 (408)
                      .++++.+.+.
T Consensus        91 ~~y~~~lL~i  100 (152)
T 1pc2_A           91 LKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888888774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.69  E-value=0.17  Score=50.03  Aligned_cols=45  Identities=4%  Similarity=-0.064  Sum_probs=23.3

Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  218 (408)
                      ...|++++|.++.+.+      .+...|..+...+.+.|+++.|.+.|..+
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445555555553222      13455555555555555555555555554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.38  E-value=0.17  Score=36.87  Aligned_cols=120  Identities=12%  Similarity=0.059  Sum_probs=65.4

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-------------------CCCHHHH
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-------------------AKTSETY  160 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~  160 (408)
                      -.|.+++..++..+.....    +..-||..|.-....-+-+...++++.+-..                   +.+....
T Consensus        19 ldG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~v   94 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHV   94 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHH
Confidence            3466777777777766542    3445555554444444444444444433221                   1244445


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV  224 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  224 (408)
                      +..++.+...|.-|+-.+++.++... .+|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus        95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            55556666666666666666664332 2455566666666666666666666666666666553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.22  E-value=0.045  Score=37.56  Aligned_cols=65  Identities=11%  Similarity=-0.028  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          156 TSETYTALLHLYAGAKW---TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      |...+..+..++...++   .++|..++++.+..+ +-++.+...+...+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44444444444433322   455555555555543 334445555555555555555555555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.18  E-value=0.031  Score=39.35  Aligned_cols=65  Identities=5%  Similarity=-0.205  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhcc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTK------QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      .-+..|...+...|+++.|...|+...+.-      -.+....+..+..++.+.|++++|..++++..+..
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345577888888999999999888765532      12244567788888899999999999999888753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.07  E-value=0.13  Score=35.22  Aligned_cols=67  Identities=9%  Similarity=0.045  Sum_probs=51.0

Q ss_pred             CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 015370          189 SFNALMYNEMMTLYMSVGQ---VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD  256 (408)
Q Consensus       189 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  256 (408)
                      +.|+..+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|+..|+.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567777777777765544   68888888888875433 5677777778888889999999999888874

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.88  E-value=2.9e-06  Score=75.75  Aligned_cols=264  Identities=11%  Similarity=0.042  Sum_probs=163.4

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL  166 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~  166 (408)
                      .+..|..|.++....+++.+|++-|-+       .-|+..|..+|.+..+.|.+++-.+++...++...+...=+.|+-+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a  125 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA  125 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            445566777777777777666654422       2245667777777777777777777777666655555555677777


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV  246 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  246 (408)
                      |++.+++.+-++++       -.||..-...+.+-|...|.++.|.-+|..+..         |.-|...+.+.|++..|
T Consensus       126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred             HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence            77777765543332       125666666677777777777777666643322         22334445566777666


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      .+.-+       -.-++.||-.+-.+|...+.+..|.-.-+.-+    ..++  -...++..|-..|.+++.+.+++.-.
T Consensus       190 VdaAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEagl  256 (624)
T 3lvg_A          190 VDGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAAL  256 (624)
T ss_dssp             TTTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred             HHHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            44322       22456678888888888888888776222221    1122  22245666788899988888887544


Q ss_pred             hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015370          327 MTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML  395 (408)
Q Consensus       327 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  395 (408)
                      ... +.-...|+.|.-.|++- +.++.++-++..-.    +.|+   -.+|++|.+...|.++.-++..
T Consensus       257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s----riNi---pKviracE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS----RVNI---PKVLRAAEQAHLWAELVFLYDK  316 (624)
T ss_dssp             TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS----SSCC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred             CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH----hccH---HHHHHHHHHHhhHHHHHHHHhc
Confidence            221 33455677788888764 45554444443221    2232   2478999999999998887764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.44  Score=36.81  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             HHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 015370          133 LMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA  212 (408)
Q Consensus       133 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  212 (408)
                      .....|+++.|.++.+++    .+...|..|.......|+++-|++.|.+..+         +..+.-.|.-.|+.++..
T Consensus        14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            334455555555554444    2445555555555555555555555554432         223333344445544444


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          213 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       213 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                      ++-+.....|-      ++.....+...|+++++.++|.+.
T Consensus        81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            44443333321      122223333445555555555443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.46  Score=36.72  Aligned_cols=98  Identities=10%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          203 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       203 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      ...|+++.|.++.+++      -+...|..+.+.....|+++-|++.|.+..+          +..+.-.|.-.|+.+.-
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence            4556666666665544      2455666666666666666666666666554          33455555555555554


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK  323 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  323 (408)
                      .+ +.+.....+      -++.....+.-.|+++++.++|.
T Consensus        80 ~k-la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           80 SK-MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HH-HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HH-HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence            44 222222221      22333344445566666666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.75  E-value=0.055  Score=39.23  Aligned_cols=66  Identities=8%  Similarity=-0.129  Sum_probs=32.3

Q ss_pred             CccchHHHHHHHHHhcCCHHH---HHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          297 RQWITYDFLIILYAGLGNKDK---IDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       297 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ++..+-..+..++.+..+...   ++.+++.+...+ .|  .....-.|.-++.+.|++++|.+.++.+.+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344444445555555554433   555555554442 12  1122223444556666666666666666553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.49  E-value=0.16  Score=35.49  Aligned_cols=27  Identities=4%  Similarity=-0.004  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015370          228 FTYNLWISSCAATLNIDQVKKFLDEMS  254 (408)
Q Consensus       228 ~~~~~ll~~~~~~g~~~~a~~~~~~~~  254 (408)
                      ..+..+..++.+.|+++.|..+++++.
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            334444444444444444444444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.18  E-value=1.8  Score=39.37  Aligned_cols=183  Identities=11%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHh-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hc
Q 015370          171 KWTEKAEELFERVKQ-----SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCA----AT  240 (408)
Q Consensus       171 ~~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~----~~  240 (408)
                      |++++|++.+-.+.+     .+..........++..|...|+++...+.+..+... |..+.  ....+++.+.    ..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence            677888777765553     233445566777888888888888887777666543 32222  2233333322    22


Q ss_pred             CCHHH--HHHHHHHHhcCCCCCCCH--------HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc-----cchHHHH
Q 015370          241 LNIDQ--VKKFLDEMSCDSGGSDDW--------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-----WITYDFL  305 (408)
Q Consensus       241 g~~~~--a~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l  305 (408)
                      ...+.  -..+.+...   .+....        .....|...|...|++.+|.. ++..+.......+     +..+...
T Consensus       108 ~~~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~-iL~~l~~Et~~~~~~~~kve~~l~q  183 (445)
T 4b4t_P          108 KSLDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAAD-ILCELQVETYGSMEMSEKIQFILEQ  183 (445)
T ss_dssp             CTTHHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcccHHHHHHHHHHH
Confidence            22221  111221111   122211        012345566666666666666 5555544322221     1344445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc--cCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMT--KQKMTS----RNYICILSSYLMLGHLKEVGEIIDQ  359 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~  359 (408)
                      +..|...+++.+|..++.+....  ...+++    ..|...+..+...+++.+|...|.+
T Consensus       184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e  243 (445)
T 4b4t_P          184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE  243 (445)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            55566666666666666654321  111111    1234455555555666665555444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.15  E-value=1.3  Score=44.02  Aligned_cols=258  Identities=10%  Similarity=0.010  Sum_probs=142.0

Q ss_pred             HHHhhcChHHHHHHHhcCCCC--CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-------CCChhhHHHHHHH
Q 015370          133 LMTKVFGIHSGERYFEGLPLS--AKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNL-------SFNALMYNEMMTL  201 (408)
Q Consensus       133 ~~~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~  201 (408)
                      +....|+.++++.+++.....  ..+  ...-..+.-+.+.+|..+++..++.......-       .+....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            345677888888888886642  122  33444555666677776778887777654321       0112222333333


Q ss_pred             HHhcCC-HHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCc
Q 015370          202 YMSVGQ-VEKVALVVEEIKRKNVVPDIFTYN--LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH  278 (408)
Q Consensus       202 ~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  278 (408)
                      .+-.|. -+++.+.+..+....- +......  ++...+...|+.+....++..+.+.  ...++.-...+.-++.-.|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--QHGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCC
Confidence            333332 2455555555554311 1111122  2333455678888888888877663  22233333444445557788


Q ss_pred             hhhhHHHHHHHHHHhcccCccchH--HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015370          279 LVNAESSTLVEAEKSITQRQWITY--DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI  356 (408)
Q Consensus       279 ~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  356 (408)
                      .+.+.. +++.+... ..|....-  .++..+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++
T Consensus       540 ~e~~~~-li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          540 QELADD-LITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGGGHH-HHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             hHHHHH-HHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            888887 66665542 22222221  234556778899888888988877642 22333333344445556777777777


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 015370          357 IDQWKQSATSDFDISACNRLLGAFSDVGLT-EKANEFHMLLLQ  398 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~  398 (408)
                      ++.+.+.+  .|.+..-..+..|....|.. .++.+++..+..
T Consensus       617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            77666543  45555555555555555554 466777777653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.08  E-value=0.37  Score=36.23  Aligned_cols=83  Identities=13%  Similarity=0.001  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC---chhhhHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHH
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS---HLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                      ...+.+-|.+.... + +++..+.-.+.-++++++   +.+++.. +++...+.. +..+...+-.|.-+|.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~-lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIV-LLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            44555555555542 2 367777777777788877   6668888 777777765 312345555677778888888888


Q ss_pred             HHHHHHHHhc
Q 015370          319 DQIWKSLRMT  328 (408)
Q Consensus       319 ~~~~~~m~~~  328 (408)
                      .+.++.+.+.
T Consensus        91 ~~y~~~lL~i  100 (152)
T 1pc2_A           91 LKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888888776

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.94  E-value=0.33  Score=36.21  Aligned_cols=102  Identities=10%  Similarity=0.101  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHcCch------hhhHHHHHHHHHHhcccCccchHHHHHHH------HHhcCCHHHHHHHHHHHHhc
Q 015370          261 DDWVKYVNLVNIYITASHL------VNAESSTLVEAEKSITQRQWITYDFLIIL------YAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       261 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~m~~~  328 (408)
                      -|..+|-..+...-+.|+.      ++.++ ++++.....++.....|...|..      +...+++++|.++|+.+...
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd-~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIG-RYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHH-HHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHH-HHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4556666666666666776      66666 66666655443322333322222      12346677777777766554


Q ss_pred             cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          329 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       329 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                      +-+- ...|.....-=.+.|++..|.+++.+.+..+
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            2222 3333333333446677777777777766644

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.78  E-value=1.6  Score=36.77  Aligned_cols=125  Identities=11%  Similarity=-0.027  Sum_probs=84.2

Q ss_pred             cChHHHHHHHhcCCCCCCCHHHHHHHHH-HHHcC--CC------HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 015370          138 FGIHSGERYFEGLPLSAKTSETYTALLH-LYAGA--KW------TEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSV  205 (408)
Q Consensus       138 g~~~~a~~~~~~~~~~~~~~~~~~~ll~-~~~~~--~~------~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~  205 (408)
                      ++..+..+.+.+.....+....|..++. .++..  |.      ...|...+++..+.+  |+   ...|..+...|.+.
T Consensus       135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~v  212 (301)
T 3u64_A          135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAA  212 (301)
T ss_dssp             SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhC
Confidence            3444455556566543344566766664 33332  33      567777788887764  44   56888999999884


Q ss_pred             -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCC--CCHHH
Q 015370          206 -----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT-LNIDQVKKFLDEMSCDSGGS--DDWVK  265 (408)
Q Consensus       206 -----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~--~~~~~  265 (408)
                           |+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++.... ...  |+...
T Consensus       213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a-~p~~~P~~~l  279 (301)
T 3u64_A          213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI-DPESVPHNKL  279 (301)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC-CGGGCSSCHH
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCChhH
Confidence                 89999999999998854322356666677888774 8999999999998873 333  55443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.64  E-value=2.5  Score=38.41  Aligned_cols=255  Identities=13%  Similarity=0.052  Sum_probs=150.7

Q ss_pred             hcChHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHH----Hh
Q 015370          137 VFGIHSGERYFEGLPLS-------AKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLY----MS  204 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~----~~  204 (408)
                      .|+++.|++.+-.+.+.       ..+......++..|.+.|+++...+.+..+... |..+  .....++..+    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~  106 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS  106 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence            37788888766443321       235777888999999999999998888776643 4332  2333444433    23


Q ss_pred             cCCHHHH--HHHHHHHH--hCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHH
Q 015370          205 VGQVEKV--ALVVEEIK--RKN-VVP---DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW----VKYVNLVNI  272 (408)
Q Consensus       205 ~g~~~~a--~~~~~~m~--~~g-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~  272 (408)
                      ....+..  ..+.+...  ..| +-.   .......|...+...|++.+|..++..+.....-..+.    ..+..-+..
T Consensus       107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3333322  22222111  111 111   12334567788899999999999999987532222222    457778889


Q ss_pred             HHHcCchhhhHHHHHHHHHHh----cccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChhhHH----HHH
Q 015370          273 YITASHLVNAESSTLVEAEKS----ITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYI----CIL  341 (408)
Q Consensus       273 ~~~~~~~~~a~~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~----~li  341 (408)
                      |...+++..|.. ++.++...    ...|+  ...+...+..+...+++.+|-..|.+.... ...-+...+.    .++
T Consensus       187 ~l~~~d~~~a~~-~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v  265 (445)
T 4b4t_P          187 SILKGDYSQATV-LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV  265 (445)
T ss_dssp             HHHHTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHH-HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            999999999999 77776432    22222  235566777788889999998887765432 1111222222    233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV--GLTEKANEFHML  395 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~  395 (408)
                      .+..-.+....--.++....... .-++...|..++.+|...  .+++.+.+.|..
T Consensus       266 ~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~  320 (445)
T 4b4t_P          266 YFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEP  320 (445)
T ss_dssp             HHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred             HHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence            33334444444455555554443 235667788888888774  345555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.94  E-value=1.4  Score=32.84  Aligned_cols=103  Identities=8%  Similarity=-0.097  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHHhcCCH------HHHHHHHHHHhcCCCCCCCHHH-HHHHHHH------HHHcCchhhhHHHHHHHHHH
Q 015370          226 DIFTYNLWISSCAATLNI------DQVKKFLDEMSCDSGGSDDWVK-YVNLVNI------YITASHLVNAESSTLVEAEK  292 (408)
Q Consensus       226 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~-~~~li~~------~~~~~~~~~a~~~~~~~~~~  292 (408)
                      |..+|-..+...-+.|++      ++..++|++...  .++|+... |...+..      +...++.++|.+ ++..+.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~-vy~~a~~   88 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARD-YFQMARA   88 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHH-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHH
Confidence            556777777777777888      888888888877  46665321 2222222      233477888888 8887766


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 015370          293 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM  332 (408)
Q Consensus       293 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  332 (408)
                      .... =...|-.....-.+.|++..|.+++.+....+.+|
T Consensus        89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            5222 24455555555567888888888888777766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.60  E-value=0.41  Score=46.43  Aligned_cols=52  Identities=8%  Similarity=-0.076  Sum_probs=32.0

Q ss_pred             HHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL  325 (408)
Q Consensus       272 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  325 (408)
                      .+...|+++.|+. +.++.....+. +..+|..|..+|...|+++.|+-.+..+
T Consensus       346 FLl~K~~~elAL~-~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          346 FLLNRGDYELALG-VSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHhccCcHHHHHH-HHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3455667777776 55554443322 5567777777777777777777666554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.60  E-value=0.2  Score=44.84  Aligned_cols=60  Identities=7%  Similarity=0.033  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          301 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK  361 (408)
Q Consensus       301 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  361 (408)
                      +...++..+...|+++++...+..+.... ..+...|..++.++.+.|+..+|++.|++..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455566666677777766666655443 2255566667777777777777777666654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.50  E-value=4.8  Score=41.62  Aligned_cols=144  Identities=11%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-CC---------------
Q 015370           92 RHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-AK---------------  155 (408)
Q Consensus        92 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~---------------  155 (408)
                      ..++..+.+.+..+.+.++..+.      +.++..--.+..++...|++++|.+.|.+.... +.               
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            34666666777777666655443      223433334556777888888888888765432 00               


Q ss_pred             --------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015370          156 --------TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV  223 (408)
Q Consensus       156 --------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  223 (408)
                              -..=|..++..+-+.+.++.+.++-....+..-+-+    ...|..+..++...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                    012245556666666666666655554443211111    11456666666666666666666666654433


Q ss_pred             CCCHHHHHHHHHHHHhcCCH
Q 015370          224 VPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       224 ~p~~~~~~~ll~~~~~~g~~  243 (408)
                      +  ......++..+|..|..
T Consensus       970 r--~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          970 K--KSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             C--HHHHHHHHHHHHHHCCH
T ss_pred             H--HHHHHHHHHHHHhCCCh
Confidence            2  33445555555554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.22  E-value=1.4  Score=43.71  Aligned_cols=251  Identities=8%  Similarity=-0.047  Sum_probs=131.5

Q ss_pred             hcccHHHHHHHHHHHHhccCCCCChHHH--HHHHHHHHhhcChHHHHHHHhcCCCC-C--------CCHHHHHHHHHHHH
Q 015370          100 KSQRYKHALEISEWMVTHKEFVLSDSDY--ATRIDLMTKVFGIHSGERYFEGLPLS-A--------KTSETYTALLHLYA  168 (408)
Q Consensus       100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~~~ll~~~~  168 (408)
                      ..|+.++++.++....-.+ -..+..+-  ..+.-+....|..+++..++...... .        +....-.++.-+++
T Consensus       386 h~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          386 HKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             TSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4455555555554433211 01222222  22333445566656677665553321 1        11222233333343


Q ss_pred             cCCC-HHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCH
Q 015370          169 GAKW-TEKAEELFERVKQSNLSFNALMYN--EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS--SCAATLNI  243 (408)
Q Consensus       169 ~~~~-~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~  243 (408)
                      -.|. -+++.+.+..+....- +......  +|...+.-.|+-+-...++..+.+..   +..+...+.-  ++...|+.
T Consensus       465 ~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          465 AMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             STTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred             hcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence            3343 2456666666655431 1111122  22333456678787888888776542   3333333333  44477899


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHH-HH---HHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 015370          244 DQVKKFLDEMSCDSGGSDDWVK-YV---NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID  319 (408)
Q Consensus       244 ~~a~~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  319 (408)
                      +.+..+++.+...    .++.+ |.   ++.-+|+..|+.....+ ++..+.... ..++.-...+.-++...|+.+.+.
T Consensus       541 e~~~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~-LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          541 ELADDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKR-LLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             GGGHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHH-HHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             HHHHHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence            9999898888863    23222 32   44556788888877777 676665432 223333333444555567777777


Q ss_pred             HHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 015370          320 QIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWKQ  362 (408)
Q Consensus       320 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~  362 (408)
                      ++++.+...+ .|....-..+.-+....|.. .+|.+++..+..
T Consensus       615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            7777655543 44444444444455545543 578888888765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.07  E-value=0.93  Score=32.77  Aligned_cols=80  Identities=11%  Similarity=-0.032  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 015370          316 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE---VGEIIDQWKQSATSDF--DISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       316 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      ..+.+-|.+....|. |+..+--.+..++.+..+..+   ++.++++..+.+  .|  .....-.|.-++.+.|++++|.
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            334444443333332 344444444444554444333   555555554432  12  1222223444555555555555


Q ss_pred             HHHHHHHh
Q 015370          391 EFHMLLLQ  398 (408)
Q Consensus       391 ~~~~~m~~  398 (408)
                      ++++.+++
T Consensus        95 ~~~~~lL~  102 (126)
T 1nzn_A           95 KYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.05  E-value=0.55  Score=39.58  Aligned_cols=67  Identities=9%  Similarity=0.026  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHH-----cCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh-cCCHHHHHHHHHHHHhccCC
Q 015370          264 VKYVNLVNIYIT-----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LGNKDKIDQIWKSLRMTKQK  331 (408)
Q Consensus       264 ~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~  331 (408)
                      ..|..+...|.+     .|+.++|.+ .|++...-.+..+..++......++. .|+.+++.+.+++.......
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~-~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHT-AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHH-HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            345555555555     255555555 55555444443334444444554444 25555555555555544333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.90  E-value=1.3  Score=32.29  Aligned_cols=69  Identities=6%  Similarity=-0.103  Sum_probs=35.0

Q ss_pred             cccCccchHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          294 ITQRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       294 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      +..|+..+--.+..++.+..+   ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            333444444444555555443   335556666655543211222333455566666666666666666665

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.67  E-value=5.3  Score=41.26  Aligned_cols=51  Identities=12%  Similarity=-0.007  Sum_probs=27.9

Q ss_pred             HHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015370          130 RIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERV  183 (408)
Q Consensus       130 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m  183 (408)
                      ++..+...+..+.+.++....+.   +...--.+..+|...|++++|.+.|++.
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            44445555566555555444432   3333344556666677777777776553

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.62  E-value=9.9e-05  Score=66.17  Aligned_cols=269  Identities=11%  Similarity=0.113  Sum_probs=172.4

Q ss_pred             CCCCcchHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHH
Q 015370           51 NSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATR  130 (408)
Q Consensus        51 ~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  130 (408)
                      .++..+++.+++-+...+...+.+.++.+++.   -|+..|..+|.+..+.|.+++-+..+...++.   .-++..=+.|
T Consensus        49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteL  122 (624)
T 3lvg_A           49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETEL  122 (624)
T ss_dssp             SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHH
T ss_pred             HHhCCccHHHHHHHHHHccCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHH
Confidence            34445555555544333333333333333333   46677888999999999999988888766654   3445556788


Q ss_pred             HHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 015370          131 IDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       131 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  210 (408)
                      +-+|++.++..+-++    ... +||..-...+.+-|...|.++.|.-+|..+..         |..|...+.+.|++..
T Consensus       123 i~ayAk~~rL~elEe----fl~-~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~  188 (624)
T 3lvg_A          123 IFALAKTNRLAELEE----FIN-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA  188 (624)
T ss_dssp             HHHHHTSCSSSTTTS----TTS-CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred             HHHHHhhCcHHHHHH----HHc-CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence            999999999776333    222 47776677788888888888888777765443         3344555667777776


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 015370          211 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA  290 (408)
Q Consensus       211 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  290 (408)
                      |.+.-   ++.   -+..||.-+-.+|...+.+.-|.-.--.+.-....      ...++..|-..|.+++-+. +++.-
T Consensus       189 AVdaA---rKA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------L~elv~~YE~~G~f~ELIs-LlEag  255 (624)
T 3lvg_A          189 AVDGA---RKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------LEELINYYQDRGYFEELIT-MLEAA  255 (624)
T ss_dssp             STTTT---TTC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------CSGGGSSSSTTCCCTTSTT-THHHH
T ss_pred             HHHHH---Hhc---CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------HHHHHHHHHhCCCHHHHHH-HHHHH
Confidence            65432   221   35678888889999999988776554444432111      1256788999999999888 66554


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          291 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW  360 (408)
Q Consensus       291 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  360 (408)
                      . +........|+-|.-.|++- ++++..+-++..-   -+.|..   -+|++|.+...|.++.-++...
T Consensus       256 l-glErAHmGmFTELaILYsKY-~PeKlmEHlklf~---sriNip---KviracE~ahLW~ElvfLY~~y  317 (624)
T 3lvg_A          256 L-GLERAHMGMFTELAILYSKF-KPQKMREHLELFW---SRVNIP---KVLRAAEQAHLWAELVFLYDKY  317 (624)
T ss_dssp             T-TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSS---SSSCCT---TTHHHHTTTTCHHHHHHHHHHH
T ss_pred             h-CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhccHH---HHHHHHHHHhhHHHHHHHHhcc
Confidence            3 34455667888888888775 4555555443211   122221   3677777777777777776653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.59  E-value=1.4  Score=42.73  Aligned_cols=51  Identities=14%  Similarity=-0.099  Sum_probs=37.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          344 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       344 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      |...|+++-|+.+-++.+...  +-+..+|..|..+|...|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456678888888888777643  346778888888888888888888777766

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.29  E-value=0.66  Score=41.42  Aligned_cols=68  Identities=9%  Similarity=-0.021  Sum_probs=32.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCCHHH
Q 015370          197 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVK  265 (408)
Q Consensus       197 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~  265 (408)
                      .++..+...|++++|...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+    ..|+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34444455555555555555544332 12444555555555555555555555544322    1345555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.64  E-value=6.9  Score=34.73  Aligned_cols=93  Identities=13%  Similarity=0.004  Sum_probs=50.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCCCHHHHHH--
Q 015370          304 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-----NYICILSSYLMLGHLKEVGEIIDQWKQSA-TSDFDISACNR--  375 (408)
Q Consensus       304 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~--  375 (408)
                      -++..|...|++.+|.+++.++.+.=-+.|..     .|..-+..|...+++.++...+....... .+.+++..-..  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            45666777777777777777665532222222     24445666777777777777776654321 11133322111  


Q ss_pred             --HHHHHH-hcCChHHHHHHHHHH
Q 015370          376 --LLGAFS-DVGLTEKANEFHMLL  396 (408)
Q Consensus       376 --li~~~~-~~g~~~~a~~~~~~m  396 (408)
                        -...+. ..++|+.|...|-+.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHH
Confidence              112234 567777776665544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.01  E-value=2  Score=29.40  Aligned_cols=48  Identities=6%  Similarity=0.070  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .=++.+-++.+-..++.|++....+.+.+|.+.+++..|.++|+..+.
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334555555555555666666666666666666666666666655553

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.60  E-value=2.9  Score=28.50  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=64.8

Q ss_pred             ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015370          102 QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE  181 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~  181 (408)
                      ...++|..+-+++...+  . ....--+-+..+...|++++|..+.+.+.  -||...|-+|..  .+.|..+++..-+.
T Consensus        20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            46789999999998765  2 22222233456778999999999999888  499999988865  47788899999888


Q ss_pred             HHHhCCCCCChhhHH
Q 015370          182 RVKQSNLSFNALMYN  196 (408)
Q Consensus       182 ~m~~~~~~p~~~~~~  196 (408)
                      ++...| .|....|.
T Consensus        93 ~la~sg-~p~~q~Fa  106 (115)
T 2uwj_G           93 GLGGSS-DPALADFA  106 (115)
T ss_dssp             HHHTCS-SHHHHHHH
T ss_pred             HHHhCC-CHHHHHHH
Confidence            888887 44444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=90.34  E-value=3.1  Score=28.41  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=63.7

Q ss_pred             ccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 015370          102 QRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE  181 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~  181 (408)
                      ...++|..+-+++...+  . ....--+-+..+...|++++|..+.+.+.  -||...|-+|...  +.|..+++..-+.
T Consensus        21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL~   93 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRLN   93 (116)
T ss_dssp             TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence            46788989999988765  2 22222233456678899999999999988  4999999888664  6688888888888


Q ss_pred             HHHhCCCCCChhhHH
Q 015370          182 RVKQSNLSFNALMYN  196 (408)
Q Consensus       182 ~m~~~~~~p~~~~~~  196 (408)
                      ++...| .|....|.
T Consensus        94 ~la~sg-~p~~q~Fa  107 (116)
T 2p58_C           94 RLARSQ-DPRIQTFV  107 (116)
T ss_dssp             HHTTCC-CHHHHHHH
T ss_pred             HHHhCC-CHHHHHHH
Confidence            888887 44444443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.15  E-value=2.1  Score=29.31  Aligned_cols=63  Identities=10%  Similarity=-0.002  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      +.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+-.+.+...  ...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence            45567777788888888999999999999999999999999999998876533  3345665654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.85  E-value=4.7  Score=29.75  Aligned_cols=68  Identities=6%  Similarity=-0.084  Sum_probs=38.5

Q ss_pred             cCccchHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          296 QRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      .++..+--.+..++.+..+   ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3444444455555665544   3456666666665432212223334556677777777777777777763

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.15  E-value=4.9  Score=30.55  Aligned_cols=25  Identities=8%  Similarity=-0.001  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH
Q 015370          372 ACNRLLGAFSDVGLTEKANEFHMLL  396 (408)
Q Consensus       372 ~~~~li~~~~~~g~~~~a~~~~~~m  396 (408)
                      .--.+..+|.+.|++++|+.+++.+
T Consensus       124 lkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          124 VKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            3334778888999999999988764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.16  E-value=18  Score=34.34  Aligned_cols=251  Identities=10%  Similarity=-0.001  Sum_probs=116.0

Q ss_pred             HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 015370          128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ  207 (408)
Q Consensus       128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  207 (408)
                      +..+..+.+.+++.....++.. .  +.+...-.....+....|+-.+|......+=..| ......+..++..+.+.|.
T Consensus        76 ~~~l~~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~  151 (618)
T 1qsa_A           76 SRFVNELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK  151 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence            4445666667777777776655 2  3456656666677777777766766666655444 3345666777777766554


Q ss_pred             HHH--HHHHHHHHHhCC-----------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH---HHHHHH
Q 015370          208 VEK--VALVVEEIKRKN-----------VVPDIFT-YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV---KYVNLV  270 (408)
Q Consensus       208 ~~~--a~~~~~~m~~~g-----------~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~li  270 (408)
                      +..  ...-++.+...|           +.++... ...++....   ++..+.......      .++..   .+...+
T Consensus       152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~------~~~~~~~~~~~~~~  222 (618)
T 1qsa_A          152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT------GATDFTRQMAAVAF  222 (618)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS------CCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc------CCChhhHHHHHHHH
Confidence            322  222222222222           1111111 111111111   122222211110      11111   111122


Q ss_pred             HHHHHcCchhhhHHHHHHHHHHhcccCccc----hHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 015370          271 NIYITASHLVNAESSTLVEAEKSITQRQWI----TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM  346 (408)
Q Consensus       271 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  346 (408)
                      .-+.+. +.+.|.. .+........- +..    .+..+.......+...++...+......  .++.......+....+
T Consensus       223 ~rlar~-d~~~A~~-~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr  297 (618)
T 1qsa_A          223 ASVARQ-DAENARL-MIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG  297 (618)
T ss_dssp             HHHHHH-CHHHHHH-HHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred             HHHHhc-CHHHHHH-HHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence            223332 5566666 55555433211 211    1222222223334244555555543322  2233333334444456


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          347 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       347 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      .|+++.|...|+.|.......+-..-|  +.+++...|+.++|..+|+.+.+
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence            677777777777765422111111223  55566677777777777776653

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.53  E-value=4.7  Score=29.34  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          172 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      +.=+..+-++.+...++.|++....+.+.+|.+.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            33445666666666667777777777777777777777777777666643 2223334544443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=86.19  E-value=4.5  Score=29.42  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      |.-+..+-++.+....+.|++......+++|-+.+|+..|.++|+-.+.+..  +...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence            3445666777777888899999999999999999999999999999887653  33445665654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.60  E-value=8.2  Score=31.98  Aligned_cols=56  Identities=13%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          165 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      ....+.|++++|++....-++.. |-|...-..++..+|-.|+|+.|.+-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            44667888899988888877765 667888888889999999999998888887764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=84.26  E-value=10  Score=27.89  Aligned_cols=66  Identities=6%  Similarity=-0.065  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          155 KTSETYTALLHLYAGAKW---TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       155 ~~~~~~~~ll~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      ++..+--.+..++.++.+   ..+++.+++++...+-.-.....--|.-++.+.|++++|.+..+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            444444445555555543   234455555554432111222333444455555555555555555555

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.06  E-value=22  Score=31.49  Aligned_cols=163  Identities=11%  Similarity=-0.014  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhcChHHHHHHHhcCCCC------CCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCChhhH----
Q 015370          127 YATRIDLMTKVFGIHSGERYFEGLPLS------AKTSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMY----  195 (408)
Q Consensus       127 ~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~----  195 (408)
                      ...|...|.+.|+.++..+++.....-      .........|++.+.... ..+.-.++..+..+.. .-+-.+|    
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~  100 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            344555556666666665555554432      013444555555555532 2333333333333210 0011222    


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCCHHHHH
Q 015370          196 --NEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-----IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSDDWVKYV  267 (408)
Q Consensus       196 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~  267 (408)
                        .-++..|...|++.+|.+++..+.+.=-..|     ...|..-+..|...+++.++...+....... .+.+++....
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence              2466777777777777777776664211111     1334455566777777777777776654321 1223332211


Q ss_pred             ----HHHHHHH-HcCchhhhHHHHHHHHH
Q 015370          268 ----NLVNIYI-TASHLVNAESSTLVEAE  291 (408)
Q Consensus       268 ----~li~~~~-~~~~~~~a~~~~~~~~~  291 (408)
                          .-...+. ..+++..|.. .|.+..
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~-~F~eaf  208 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFS-YFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHH-HHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHH-HHHHHH
Confidence                1122334 5677777777 555444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=84.03  E-value=6.2  Score=32.68  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=47.0

Q ss_pred             HhcCCHHHHHHHHHHHHhccCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcC
Q 015370          310 AGLGNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEIIDQWKQSATSDF---DISACNRLLGAFSDVG  384 (408)
Q Consensus       310 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g  384 (408)
                      +..+......++.+.+.+.|..++....  ...+...++.|+.+-+..+++.   .+ ..+   |..-.+.| ...++.|
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g-~~~~~~~~~g~t~l-~~A~~~~  264 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EH-IEINDTDSDGKTAL-LLAVELK  264 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SS-CCTTCCCTTSCCHH-HHHHHTT
T ss_pred             HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cC-CCccccCCCCCcHH-HHHHHcC
Confidence            4456655556677777777776654321  1344555667887766666552   11 112   22222223 2334445


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCC
Q 015370          385 LTEKANEFHMLLLQKNCAPTNA  406 (408)
Q Consensus       385 ~~~~a~~~~~~m~~~g~~p~~~  406 (408)
                      +.    ++++.+++.|..|+..
T Consensus       265 ~~----~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          265 LK----KIAELLCKRGASTDCG  282 (285)
T ss_dssp             CH----HHHHHHHHHSSCSCCS
T ss_pred             cH----HHHHHHHHcCCCCCcc
Confidence            54    4566667778777653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.53  E-value=7.5  Score=29.52  Aligned_cols=29  Identities=14%  Similarity=0.135  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHhc
Q 015370           89 SELRHILKELRKSQRYKHALEISEWMVTH  117 (408)
Q Consensus        89 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~  117 (408)
                      .++..+.+++...+++.+|...|++..+.
T Consensus        64 ~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           64 QLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            36677888999999999999999997554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.63  E-value=32  Score=30.91  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhc---cCCCChhh--H
Q 015370          265 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT---KQKMTSRN--Y  337 (408)
Q Consensus       265 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~--~  337 (408)
                      +...+...|.+.|++++|.+ .+.++......+.  ...+-.++..+...+++..+...+.+....   +..|+...  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~-~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEK-TLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHH-HHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            44566667777777777777 6666655433322  334555666666677777777766665432   21222211  0


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          338 ICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       338 ~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      ..-...+...+++.+|-..|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            01112233556777777777665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.23
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.14
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.1
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.07
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.46
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.21
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.19
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.14
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.04
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.0
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.95
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.87
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.72
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.43
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.12
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.98
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.55
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.45
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.21
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.99
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.12
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.33
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.07
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.19

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-19  Score=157.76  Aligned_cols=334  Identities=10%  Similarity=-0.001  Sum_probs=266.0

Q ss_pred             hHHHHHhhhcCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh
Q 015370           57 DLKSRIFRISLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTK  136 (408)
Q Consensus        57 ~l~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  136 (408)
                      ++....+.. .+.+.|.+.+++..+.. +-+...+..+...+.+.|++++|++.|++..+..  +-+..++..+..++.+
T Consensus         4 ~la~~~~~~-G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~   79 (388)
T d1w3ba_           4 ELAHREYQA-GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKE   79 (388)
T ss_dssp             THHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhh
Confidence            445555553 56678888888888763 4467888999999999999999999999998864  4567889999999999


Q ss_pred             hcChHHHHHHHhcCCCCCC-C----------------------------------HHHHHHHHHHHHcCCCHHHHHHHHH
Q 015370          137 VFGIHSGERYFEGLPLSAK-T----------------------------------SETYTALLHLYAGAKWTEKAEELFE  181 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~~~-~----------------------------------~~~~~~ll~~~~~~~~~~~A~~~~~  181 (408)
                      .|++++|...+.......+ +                                  ..............+....+...+.
T Consensus        80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence            9999999998876554322 1                                  1223334444455566666666666


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 015370          182 RVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD  261 (408)
Q Consensus       182 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  261 (408)
                      ...... +-+...+..+...+...|++++|...++...+.... +..++..+...+...|++++|...+++....  .+.
T Consensus       160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~  235 (388)
T d1w3ba_         160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN  235 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred             HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHH--hhh
Confidence            665543 345678888889999999999999999998875432 5678888999999999999999999998873  355


Q ss_pred             CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 015370          262 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL  341 (408)
Q Consensus       262 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  341 (408)
                      +...+..+...+.+.|++++|.. .+++..+..+. +..+|..+...+...|++++|.+.++...... ..+...+..+.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  312 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA  312 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence            67778889999999999999999 88888766443 66788899999999999999999999877664 34667788889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          342 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       342 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      ..+...|++++|+..|++..+..  +.+..+|..+..+|.+.|++++|.+.|++.++  +.|+.
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~  372 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF  372 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence            99999999999999999988753  34677889999999999999999999999987  56754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-17  Score=147.30  Aligned_cols=299  Identities=11%  Similarity=0.029  Sum_probs=239.9

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCC
Q 015370           94 ILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKW  172 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~  172 (408)
                      +...+.+.|++++|++.++++.+..  +-++..+..+..++.+.|++++|...|++..... .+..+|..+..+|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            4566788999999999999998864  4467888999999999999999999999876654 468899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHH----------------------------------HHHHHHhcCCHHHHHHHHHHH
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNE----------------------------------MMTLYMSVGQVEKVALVVEEI  218 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~----------------------------------li~~~~~~g~~~~a~~~~~~m  218 (408)
                      +++|...+........ .+...+..                                  ........+....+...+...
T Consensus        83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            9999999999887642 22222222                                  222333344555555555555


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc
Q 015370          219 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ  298 (408)
Q Consensus       219 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  298 (408)
                      ..... -+...+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.. .+.......+ .+
T Consensus       162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~-~~  236 (388)
T d1w3ba_         162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSP-NH  236 (388)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCT-TC
T ss_pred             hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHH-HHHHhHHHhh-hH
Confidence            54322 24667777888899999999999999998873  35567789999999999999999999 8887766543 35


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          299 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       299 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      ...+..+...+.+.|++++|.+.|++..+.... +...+..+...+...|++++|.+.++......  +.+...+..+..
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~  313 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLAN  313 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHH
Confidence            677888899999999999999999998776432 56678889999999999999999999998864  567888999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCCC
Q 015370          379 AFSDVGLTEKANEFHMLLLQKNCAPTN  405 (408)
Q Consensus       379 ~~~~~g~~~~a~~~~~~m~~~g~~p~~  405 (408)
                      .+.+.|++++|.+.+++.++  +.|+.
T Consensus       314 ~~~~~~~~~~A~~~~~~al~--~~p~~  338 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALE--VFPEF  338 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTT--SCTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence            99999999999999999987  55654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.3e-14  Score=123.10  Aligned_cols=271  Identities=10%  Similarity=-0.066  Sum_probs=167.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCC
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAK  171 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~  171 (408)
                      .....+.+.|++++|+..|+.+.+..  +-+..+|..+..++...|++++|...|++..... .+...|..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            45556677777777777777777653  3345667777777777777777777776654432 34666777777777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015370          172 WTEKAEELFERVKQSNLSFNALMY-NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL  250 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  250 (408)
                      ++++|.+.+++.....  |+.... ....... .                   ..+.......+..+...+.+.++.+.+
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence            7777777777766543  221110 0000000 0                   000001111122333445566777777


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370          251 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ  330 (408)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  330 (408)
                      .+..+......+..++..+...+...|++++|.. .++......+. +...|..+...|...|++++|.+.|++..+...
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhc-ccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            7665533334556677778888888888888888 77776655433 566777888888888888888888887766532


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC---------CCCCCHHHHHHHHHHHHhcCChHHHH
Q 015370          331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA---------TSDFDISACNRLLGAFSDVGLTEKAN  390 (408)
Q Consensus       331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~  390 (408)
                      . +...|..+..+|.+.|++++|+..|++.++..         ........|..+-.++...|+.+.+.
T Consensus       238 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         238 G-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             c-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            1 45567778888888888888888888876521         01112335666666777777766544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-13  Score=119.27  Aligned_cols=235  Identities=8%  Similarity=-0.093  Sum_probs=141.4

Q ss_pred             cCCCCcHHHHHHHHHHcCCCCChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHH
Q 015370           66 SLPKRSATNVIQRWVSEGNQATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGER  145 (408)
Q Consensus        66 ~~~~~~a~~~l~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  145 (408)
                      ..+.+.|...+++..+. .+-+..+|..+..++...|++++|+..|.+..+..  +-+...+..+...+...|++++|.+
T Consensus        32 ~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~  108 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACE  108 (323)
T ss_dssp             TTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccccccccccc
Confidence            35678899999998876 34568899999999999999999999999998864  4467888889999999999999999


Q ss_pred             HHhcCCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 015370          146 YFEGLPLSAKTSETY-TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN-V  223 (408)
Q Consensus       146 ~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~  223 (408)
                      .+++.....|+.... ........                    ..+.......+..+...+.+++|...|.+..... -
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~  168 (323)
T d1fcha_         109 ILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT  168 (323)
T ss_dssp             HHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             chhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            998865443321110 00000000                    0000011111122233344455555555544322 1


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHH
Q 015370          224 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       224 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .++..++..+...+...|++++|...+++....  .+.+...|..+...|.+.|++++|.+ .+....+..+ .+..+|.
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p-~~~~a~~  244 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA-AYRRALELQP-GYIRSRY  244 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT-TCHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHH-HHHHHHHHhh-ccHHHHH
Confidence            223445555555566666666666666665542  23345556666666666666666666 5555554322 2445566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          304 FLIILYAGLGNKDKIDQIWKSLRM  327 (408)
Q Consensus       304 ~li~~~~~~~~~~~a~~~~~~m~~  327 (408)
                      .+..+|.+.|++++|++.|++..+
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666666665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-10  Score=97.99  Aligned_cols=218  Identities=9%  Similarity=0.016  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWIS  235 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  235 (408)
                      ...|+.+...+.+.+..++|+++++++++.+ |-+..+|+....++...| ++++|+..++...+.... +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            4556666666667777777777777777654 345556676666666655 367777777776665333 4566666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC-
Q 015370          236 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN-  314 (408)
Q Consensus       236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-  314 (408)
                      .+.+.|++++|++.++++.+  ..+.+...|..+...+.+.|++++|.. .+..+.+..+. +...|+.+...+.+.+. 
T Consensus       121 ~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~-~~~~al~~~p~-n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVR-NNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred             HHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence            77777777777777777766  234556667777777777777777777 66666655433 55566666555555444 


Q ss_pred             -----HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015370          315 -----KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD  382 (408)
Q Consensus       315 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~  382 (408)
                           +++|++.+....+..+. +...|..+...+. ....+++.+.++...+......+...+..++..|..
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence                 45666666655554321 3444444443333 334566666666665543223344555555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1e-09  Score=94.18  Aligned_cols=185  Identities=13%  Similarity=0.095  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015370          174 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM  253 (408)
Q Consensus       174 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  253 (408)
                      ++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|+.+
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44555555555433333444455555555555555555555555554332222334555555555555555555555555


Q ss_pred             hcCCCCCCCHHHHHHHHHH-HHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccC-C
Q 015370          254 SCDSGGSDDWVKYVNLVNI-YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-K  331 (408)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~  331 (408)
                      .+.  .+.+...|...... +...|+.+.|.. +++.+....+. +...|...+..+.+.|+++.|..+|++...... .
T Consensus       161 l~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~-i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHh--CCCcHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            542  12222333222222 222345555555 55544443222 344455555555555555555555555433321 2


Q ss_pred             CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          332 MT--SRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       332 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      |.  ...|...+.--...|+.+.+..+++++.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            21  12344444443444555555555555544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.7e-09  Score=94.22  Aligned_cols=268  Identities=9%  Similarity=0.000  Sum_probs=168.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCC-----hHHHHHHHHHHHhhcChHHHHHHHhcCCCC---CCC----HHHH
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLS-----DSDYATRIDLMTKVFGIHSGERYFEGLPLS---AKT----SETY  160 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~  160 (408)
                      .....+...|++++|++++++..+..  +.+     ...+..+..++...|++++|...|++....   .++    ...+
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34556678888889988888887753  222     235666777888888888888888765432   122    4456


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHh----CCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQ----SNLSF---NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN----VVPDIFT  229 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~  229 (408)
                      ..+...+...|++..+...+.+...    .+...   ....+..+...+...|+++.+...+.......    ......+
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            6677778888888888888877543    11111   12345566677778888888888887776432    2223445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCCH----HHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc---cch
Q 015370          230 YNLWISSCAATLNIDQVKKFLDEMSCDSG-GSDDW----VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---WIT  301 (408)
Q Consensus       230 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  301 (408)
                      +......+...++...+...+.+...... .....    ..+..+...+...|++++|.. .+..........+   ...
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN-WLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHhccccchHHHHH
Confidence            55566667777888888877776554211 11111    224555666777788888877 6655443322221   234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc----cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMT----KQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +..+...+...|++++|...+++....    +..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455667777788888888877765432    22222 234566677777888888888888776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.3e-09  Score=93.42  Aligned_cols=219  Identities=9%  Similarity=-0.012  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHh--------------hcChHHHHHHHhcCCCC--CCCHHHHHHHHHHH
Q 015370          104 YKHALEISEWMVTHKEFVLSDSDYATRIDLMTK--------------VFGIHSGERYFEGLPLS--AKTSETYTALLHLY  167 (408)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------~g~~~~a~~~~~~~~~~--~~~~~~~~~ll~~~  167 (408)
                      .+.+..+|+++...-  +.++..|...+..+..              .+..++|..+|++....  +.+...|...+...
T Consensus        32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            345666788877753  4556666555554432              23457888888886543  34677889999999


Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHH
Q 015370          168 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS-SCAATLNIDQV  246 (408)
Q Consensus       168 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a  246 (408)
                      .+.|++++|..+|+++++........+|...+..+.+.|+++.|.++|+.+.+.+.. +...|..... -+...|+.+.|
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a  188 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence            999999999999999988643223457999999999999999999999999887544 3333333333 23456899999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcc-cC--ccchHHHHHHHHHhcCCHHHHHHHHH
Q 015370          247 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT-QR--QWITYDFLIILYAGLGNKDKIDQIWK  323 (408)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~  323 (408)
                      ..+|+.+.+.  .+.+...|...+..+.+.|+++.|+. ++++.....+ .|  ....|...+..-...|+.+.+.++++
T Consensus       189 ~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~-~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRV-LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999984  56678889999999999999999999 9998877643 32  23578888888788999999999999


Q ss_pred             HHHhc
Q 015370          324 SLRMT  328 (408)
Q Consensus       324 ~m~~~  328 (408)
                      ++.+.
T Consensus       266 r~~~~  270 (308)
T d2onda1         266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=8.3e-09  Score=89.68  Aligned_cols=259  Identities=9%  Similarity=-0.056  Sum_probs=143.9

Q ss_pred             CCCCcHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCC----hHHHHHHHHHHHhhc
Q 015370           67 LPKRSATNVIQRWVSEGNQAT----VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLS----DSDYATRIDLMTKVF  138 (408)
Q Consensus        67 ~~~~~a~~~l~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g  138 (408)
                      .+.+.|.+.+++..+.....+    ...+..+...+...|++++|++.|++..+...-.++    ...+..+...+...|
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG  105 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            455666777766655421111    234555666777777777777777766543211112    233445556666677


Q ss_pred             ChHHHHHHHhcCCC-------CC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhc
Q 015370          139 GIHSGERYFEGLPL-------SA-K-TSETYTALLHLYAGAKWTEKAEELFERVKQSN----LSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       139 ~~~~a~~~~~~~~~-------~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~  205 (408)
                      ++..+...+.+...       .. + ....+..+...+...|+++.+...+.......    ......++..+...+...
T Consensus       106 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (366)
T d1hz4a_         106 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR  185 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            77666665554221       11 1 12345556666777777777777776665432    122234455555666667


Q ss_pred             CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHcC
Q 015370          206 GQVEKVALVVEEIKRK----NVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS--DDWVKYVNLVNIYITAS  277 (408)
Q Consensus       206 g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~  277 (408)
                      +++..+...+.+....    +..+.  ...+..+...+...|+++.|...++.........  .....+..+...+...|
T Consensus       186 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  265 (366)
T d1hz4a_         186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG  265 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence            7777777766655421    11111  1234444555666777777777777665531111  11233455666777777


Q ss_pred             chhhhHHHHHHHHHHhc----ccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          278 HLVNAESSTLVEAEKSI----TQR-QWITYDFLIILYAGLGNKDKIDQIWKSLR  326 (408)
Q Consensus       278 ~~~~a~~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  326 (408)
                      ++++|.. .++......    ..| ....+..+...|...|++++|.+.+++..
T Consensus       266 ~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         266 EFEPAEI-VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             CHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHH-HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7777777 666554321    111 23456666677777777777777776544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.2e-10  Score=94.97  Aligned_cols=198  Identities=11%  Similarity=0.065  Sum_probs=148.4

Q ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc-ChHHHHHHHhcCCCC-CCCHHHHHHHHH
Q 015370           88 VSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF-GIHSGERYFEGLPLS-AKTSETYTALLH  165 (408)
Q Consensus        88 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~-~~~~~~~~~ll~  165 (408)
                      ...++.+-..+.+.+++++|+++++.+.+..  +-+...|+....++...| ++++|+..++..... +.+..+|+.+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            3456666677888899999999999999864  445667888888888776 489999999887555 456889999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 015370          166 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN---  242 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---  242 (408)
                      .+.+.|++++|+..++++.+.. +-+..+|..+...+.+.|++++|++.++.+.+..+. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            9999999999999999998875 457889999999999999999999999999886543 56677766666655554   


Q ss_pred             ---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHh
Q 015370          243 ---IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS  293 (408)
Q Consensus       243 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  293 (408)
                         +++|++.+.+..+.  .+.+...|+.+...+...+ .+++.+ .+....+.
T Consensus       199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~-~~~~~~~l  248 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPN-LLNQLLDL  248 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHH-HHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHH-HHHHHHHh
Confidence               56777777776662  3445666666655544433 466666 55555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=9.1e-10  Score=91.82  Aligned_cols=95  Identities=12%  Similarity=-0.094  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS  204 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  204 (408)
                      +|..+..+|.+.|++++|+..|++..... .+..+|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+..+|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence            44444555555666666666555544332 345556666666666666666666666655543 2234455555666666


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 015370          205 VGQVEKVALVVEEIKRK  221 (408)
Q Consensus       205 ~g~~~~a~~~~~~m~~~  221 (408)
                      .|++++|...|+...+.
T Consensus       118 ~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhh
Confidence            66666666666655543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.5e-10  Score=98.44  Aligned_cols=273  Identities=8%  Similarity=-0.030  Sum_probs=184.9

Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHhccCCCCCh-HHHHHHHHHH----------HhhcChHHHHHHHhcCCCC-CCCHHHH
Q 015370           93 HILKELRKSQRYKHALEISEWMVTHKEFVLSD-SDYATRIDLM----------TKVFGIHSGERYFEGLPLS-AKTSETY  160 (408)
Q Consensus        93 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~----------~~~g~~~~a~~~~~~~~~~-~~~~~~~  160 (408)
                      .++......+..++|+++++...+.   .|+. ..|+..-..+          ...|.+++|+.+++..... +.+...|
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~  110 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW  110 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            3333333444458999999999885   3553 4454433332          2344578888888886654 3567788


Q ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370          161 TALLHLYAGAKW--TEKAEELFERVKQSNLSFNALMYN-EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC  237 (408)
Q Consensus       161 ~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  237 (408)
                      ..+..++...++  +++|...++++.+.. +++...+. .....+...+.+++|+..++........ +...|..+..++
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~  188 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            888777777654  889999999988875 44566654 4446777789999999999988887554 678888888889


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 015370          238 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK  317 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  317 (408)
                      .+.|++++|...++...+.   .|.   .......+...+..+++.. .+....... +++...+..+...+...++.++
T Consensus       189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~-~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~  260 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAW-FYHRWLLGR-AEPLFRCELSVEKSTVLQSELE  260 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHH-HHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHH-HHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence            9999888776555444331   111   1233444566677777777 566555443 3355566667777788889999


Q ss_pred             HHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370          318 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       318 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  381 (408)
                      |.+.+.+.....+. +...+..+...+...|+.++|.+.+++.++..  +.+...|+.|...+.
T Consensus       261 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         261 SCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence            99988876654321 44566778888899999999999999998853  224455666655444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=1.5e-10  Score=100.73  Aligned_cols=253  Identities=7%  Similarity=-0.021  Sum_probs=184.0

Q ss_pred             hcChHHHHHHHhcCCCCCCC-HHHHHHHHHH---HH-------cCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 015370          137 VFGIHSGERYFEGLPLSAKT-SETYTALLHL---YA-------GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV  205 (408)
Q Consensus       137 ~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~---~~-------~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  205 (408)
                      ....++|+.+++++....|+ ...|+..-..   +.       ..|++++|+..++.....+ +-+...|..+..++...
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence            33457899988887665555 4455443333   22       2345789999999988765 45777888888888776


Q ss_pred             C--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhh
Q 015370          206 G--QVEKVALVVEEIKRKNVVPDIFTYN-LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA  282 (408)
Q Consensus       206 g--~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  282 (408)
                      +  ++++|...++.+.+.... +...+. .....+...+.++.|...++.+...  .+-+...|+.+...+.+.|++++|
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHH
Confidence            6  489999999999886433 455544 4456777889999999999999884  456788899999999999999988


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          283 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                      .. .+.......+. +    ..+...+...+..+++...+........ ++...+..+...+...|+.++|...+.+..+
T Consensus       198 ~~-~~~~~~~~~~~-~----~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  270 (334)
T d1dcea1         198 GP-QGRLPENVLLK-E----LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEP  270 (334)
T ss_dssp             SS-CCSSCHHHHHH-H----HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HH-HHHHhHHhHHH-H----HHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            76 44333322211 1    1233345667778888888887666542 3455566677888888999999999998876


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 015370          363 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT  404 (408)
Q Consensus       363 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  404 (408)
                      ..  +.+...|..+..++.+.|++++|.+.+++.++  +.|+
T Consensus       271 ~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~  308 (334)
T d1dcea1         271 EN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM  308 (334)
T ss_dssp             TC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGG
T ss_pred             hC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcc
Confidence            53  33567888899999999999999999999988  4564

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.5e-09  Score=89.08  Aligned_cols=198  Identities=11%  Similarity=0.007  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS  236 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  236 (408)
                      ..+|..+..+|.+.|++++|...|++.++.. |-++.+|+.+..+|.+.|++++|...|++..+.... +..++..+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHH
Confidence            5678888999999999999999999998875 457889999999999999999999999999986433 46678888899


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCC--
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN--  314 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--  314 (408)
                      +...|++++|...|+...+.  .+.+......+...+.+.+..+.+.. +.......  .+....++ ++..+.....  
T Consensus       115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~  188 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV-LKQHFEKS--DKEQWGWN-IVEFYLGNISEQ  188 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHS--CCCSTHHH-HHHHHTTSSCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHH-HHHHhhcc--chhhhhhh-HHHHHHHHHHHH
Confidence            99999999999999998873  34455555555556666666555554 33333222  22222222 2222222211  


Q ss_pred             --HHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 015370          315 --KDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       315 --~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  364 (408)
                        .+.+...+......  .| ...+|..+...|...|++++|...|++.+...
T Consensus       189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         189 TLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence              12222221111111  12 12356667888999999999999999988753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1e-06  Score=69.12  Aligned_cols=122  Identities=13%  Similarity=-0.020  Sum_probs=87.2

Q ss_pred             HHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 015370          131 IDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK  210 (408)
Q Consensus       131 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  210 (408)
                      ...+...|+++.|++.|.++..  ++..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..+|.+.|++++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            3455677888888888887653  677778888888888888888888888887765 4567788888888888888888


Q ss_pred             HHHHHHHHHhCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          211 VALVVEEIKRKNV--------------VPD-IFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       211 a~~~~~~m~~~g~--------------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      |.+.|++......              .++ ..++..+..++.+.|++++|.+.++...+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            8888877654210              011 23444556667777777777777777665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=4.8e-07  Score=76.29  Aligned_cols=170  Identities=7%  Similarity=-0.074  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC
Q 015370          157 SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVV-PD  226 (408)
Q Consensus       157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~  226 (408)
                      ...|......|...|++++|.+.|.+..+.    +-++ -..+|+.+..+|.+.|++++|...++.....    |-. ..
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            446777777777777788887777776542    1111 1346777777777777777777777665431    110 01


Q ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccc-
Q 015370          227 IFTYNLWISSCAA-TLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-  300 (408)
Q Consensus       227 ~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-  300 (408)
                      ..++..+...|.. .|++++|.+.+++..+-.....+    ..++..+...|.+.|++++|.. .+.++.......... 
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHHHHHHhCccchhhh
Confidence            2333444444433 46666666666665431100111    1224455555556666666665 555544433222111 


Q ss_pred             -----hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          301 -----TYDFLIILYAGLGNKDKIDQIWKSLRM  327 (408)
Q Consensus       301 -----~~~~li~~~~~~~~~~~a~~~~~~m~~  327 (408)
                           .+...+..+...|+++.|...+++..+
T Consensus       196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                 112233334445555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1.5e-06  Score=73.22  Aligned_cols=130  Identities=10%  Similarity=-0.050  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhhcChHHHHHHHhcCCCC---CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCChh
Q 015370          126 DYATRIDLMTKVFGIHSGERYFEGLPLS---AK----TSETYTALLHLYAGAKWTEKAEELFERVKQS----NL-SFNAL  193 (408)
Q Consensus       126 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~  193 (408)
                      .|......|...+++++|.+.|.+....   ..    -..+|..+..+|.+.|++++|.+.+++..+.    |- .....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            3445555555555555555555543221   01    1344555555555555555555555543321    10 00122


Q ss_pred             hHHHHHHHHHh-cCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          194 MYNEMMTLYMS-VGQVEKVALVVEEIKR----KNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       194 ~~~~li~~~~~-~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ++..+...|.. .|++++|...|++..+    .+..+. ..++..+...+...|++++|...|+++..
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            33444444432 3555555555555432    111111 22344445555555555555555555544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.5e-06  Score=66.89  Aligned_cols=87  Identities=15%  Similarity=-0.003  Sum_probs=49.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      ...+...|++++|++.|.++.    +|+..+|..+..+|.+.|++++|++.|++.++.... +...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            344455566666666665431    345555666666666666666666666666554322 345555556666666666


Q ss_pred             HHHHHHHHHHhc
Q 015370          244 DQVKKFLDEMSC  255 (408)
Q Consensus       244 ~~a~~~~~~~~~  255 (408)
                      ++|...|++...
T Consensus        87 ~~A~~~~~kAl~   98 (192)
T d1hh8a_          87 DLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.56  E-value=0.00011  Score=60.20  Aligned_cols=225  Identities=13%  Similarity=-0.008  Sum_probs=128.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015370          156 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYN  231 (408)
Q Consensus       156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~  231 (408)
                      |+..+..|...+.+.+++++|++.|++..+.|   +..++..|...|..    ..++..|...+......+.   .....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence            34456666666667777777777777777766   55666666666655    4567777777777666542   22233


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc----CchhhhHHHHHHHHHHhcccCccchHH
Q 015370          232 LWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA----SHLVNAESSTLVEAEKSITQRQWITYD  303 (408)
Q Consensus       232 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~  303 (408)
                      .+...+..    .++.+.|...++...+. |.   ......+...+...    .....+.. .+..   .....+...+.
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g~---~~a~~~l~~~~~~~~~~~~~~~~a~~-~~~~---~~~~~~~~~~~  146 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDL-KY---AEGCASLGGIYHDGKVVTRDFKKAVE-YFTK---ACDLNDGDGCT  146 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC---HHHHHHHHHHHHHCSSSCCCHHHHHH-HHHH---HHHTTCHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhh-hh---hhHHHhhcccccCCCcccchhHHHHH-Hhhh---hhcccccchhh
Confidence            33333322    34566777777776653 32   22222333333322    22333333 2222   22233455666


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015370          304 FLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNR  375 (408)
Q Consensus       304 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  375 (408)
                      .|...|..    ..+...+...++...+.|   +......+...|..    ..+.++|..+|++..+.|    +...+..
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~  219 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFN  219 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHH
Confidence            66666664    345566666666555443   34444444444443    467888888888877755    3445555


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhcCC
Q 015370          376 LLGAFSD----VGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       376 li~~~~~----~g~~~~a~~~~~~m~~~g~  401 (408)
                      |...|.+    ..+.++|.+.|++..+.|-
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            6666654    3477888888888877664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.4e-06  Score=60.12  Aligned_cols=91  Identities=10%  Similarity=-0.029  Sum_probs=62.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          163 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN  242 (408)
Q Consensus       163 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  242 (408)
                      -.+.+.+.|++++|+..|++.++.. |-+...|..+..+|.+.|++++|+..+....+.+.. +...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            3455666777777777777776654 445666777777777777777777777777765432 56666677777777777


Q ss_pred             HHHHHHHHHHHhc
Q 015370          243 IDQVKKFLDEMSC  255 (408)
Q Consensus       243 ~~~a~~~~~~~~~  255 (408)
                      +++|+..|++..+
T Consensus        87 ~~~A~~~~~~a~~   99 (117)
T d1elwa_          87 FEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777766

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.5e-06  Score=61.99  Aligned_cols=90  Identities=16%  Similarity=0.069  Sum_probs=40.8

Q ss_pred             HHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 015370          270 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH  349 (408)
Q Consensus       270 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  349 (408)
                      ...+.+.|++++|+. .+....+..+. +...|..+..+|...|++++|++.+.+..+.+.. +...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~-~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQ-CYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHH-HHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            334444455555554 44444433222 3344444444444445555555444444443321 33344444444444455


Q ss_pred             HHHHHHHHHHHHh
Q 015370          350 LKEVGEIIDQWKQ  362 (408)
Q Consensus       350 ~~~A~~~~~~~~~  362 (408)
                      +++|+..|++..+
T Consensus        87 ~~~A~~~~~~a~~   99 (117)
T d1elwa_          87 FEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            5555554444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.7e-06  Score=64.46  Aligned_cols=93  Identities=15%  Similarity=0.027  Sum_probs=67.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015370          161 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT  240 (408)
Q Consensus       161 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  240 (408)
                      ....+.|.+.|++++|+..|++..+.+ +-+...|..+...|...|++++|...|+...+.... +..+|..+..++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence            344566777788888888888777765 446677777777788888888888888777765432 556777777777778


Q ss_pred             CCHHHHHHHHHHHhc
Q 015370          241 LNIDQVKKFLDEMSC  255 (408)
Q Consensus       241 g~~~~a~~~~~~~~~  255 (408)
                      |++++|...+++...
T Consensus        92 g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          92 GKFRAALRDYETVVK  106 (159)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888887777776

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=3.3e-07  Score=72.58  Aligned_cols=98  Identities=13%  Similarity=0.003  Sum_probs=73.5

Q ss_pred             CChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC-CHHHHHHHH
Q 015370           86 ATVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK-TSETYTALL  164 (408)
Q Consensus        86 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ll  164 (408)
                      |++..+......+.+.|++++|+..|++..+..  +.++..|..+..+|.+.|++++|+..|+......| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            666677777778888888888888888877764  45667777777778888888888888877766544 467777777


Q ss_pred             HHHHcCCCHHHHHHHHHHHHh
Q 015370          165 HLYAGAKWTEKAEELFERVKQ  185 (408)
Q Consensus       165 ~~~~~~~~~~~A~~~~~~m~~  185 (408)
                      .+|.+.|++++|+..|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            778888888888777777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.3e-06  Score=63.91  Aligned_cols=93  Identities=15%  Similarity=0.009  Sum_probs=61.8

Q ss_pred             HHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 015370          269 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG  348 (408)
Q Consensus       269 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  348 (408)
                      ....|.+.|++++|.. .+.+..+..+. +...|..+...|...|++++|.+.|++..+.... +...|..+..++...|
T Consensus        16 ~gn~~~~~~~y~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIK-FYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHH-Hhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            3455667777777777 66666655433 5666777777777777777777777776665322 4456666777777777


Q ss_pred             CHHHHHHHHHHHHhhC
Q 015370          349 HLKEVGEIIDQWKQSA  364 (408)
Q Consensus       349 ~~~~A~~~~~~~~~~~  364 (408)
                      ++++|...+++..+..
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            7777777777776653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=0.00036  Score=58.88  Aligned_cols=270  Identities=9%  Similarity=0.009  Sum_probs=144.1

Q ss_pred             ChhhHHHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 015370           87 TVSELRHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHL  166 (408)
Q Consensus        87 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~  166 (408)
                      +......+.+.|.+.|.++.|..+|..+.          .|..++..+.+.++++.|.+++.+.    .+..+|..+...
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~   78 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFA   78 (336)
T ss_dssp             ----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHH
Confidence            33334456666667777777777776543          2445566666777777777766544    356677777777


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV  246 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  246 (408)
                      +.+..+...|     .+.......++.....++..|-..|.+++...+++..... -.++...++-++..|++.+ .++.
T Consensus        79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHH
Confidence            7766655443     2223333345555666777777777777777777766543 2345556666777666643 4444


Q ss_pred             HHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHH
Q 015370          247 KKFLDEMSCDSGGSDD--------WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI  318 (408)
Q Consensus       247 ~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  318 (408)
                      .+.++.....  ..+.        ...|..++..|.+.|++++|...++..      .++..-....+..+.+..+.+..
T Consensus       152 ~e~l~~~s~~--y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k~~N~e~~  223 (336)
T d1b89a_         152 REHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITKVANVELY  223 (336)
T ss_dssp             HHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHH
T ss_pred             HHHHHhcccc--CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHccCChHHH
Confidence            4444443221  1111        112455667777777777776622211      12222333445555666666655


Q ss_pred             HHHHHHHHhccCCCChh-----------hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 015370          319 DQIWKSLRMTKQKMTSR-----------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE  387 (408)
Q Consensus       319 ~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  387 (408)
                      .++.....+.  .|+..           ....++..+-+.+++.....+++...+.+    +....++|...|...++++
T Consensus       224 ~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~  297 (336)
T d1b89a_         224 YRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQ  297 (336)
T ss_dssp             HHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhH
Confidence            5555544432  22211           12345555666667766666766655433    4467888999999988865


Q ss_pred             HHHH
Q 015370          388 KANE  391 (408)
Q Consensus       388 ~a~~  391 (408)
                      .-..
T Consensus       298 ~l~~  301 (336)
T d1b89a_         298 ALRT  301 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=2.3e-06  Score=67.49  Aligned_cols=98  Identities=10%  Similarity=-0.128  Sum_probs=48.0

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 015370          190 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL  269 (408)
Q Consensus       190 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  269 (408)
                      |+...+......|.+.|++++|+..|++...... -+...|..+..+|.+.|++++|+..|++..+.  .+-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            3444444445555555555555555555444322 13444555555555555555555555555441  22334445555


Q ss_pred             HHHHHHcCchhhhHHHHHHHHH
Q 015370          270 VNIYITASHLVNAESSTLVEAE  291 (408)
Q Consensus       270 i~~~~~~~~~~~a~~~~~~~~~  291 (408)
                      ..+|.+.|++++|.. .+....
T Consensus        79 g~~~~~l~~~~~A~~-~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIA-NLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHCCCHHHHHH-HHHHHH
Confidence            555555555555555 444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.40  E-value=9.1e-05  Score=60.83  Aligned_cols=177  Identities=11%  Similarity=-0.042  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCC
Q 015370          171 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA----ATLN  242 (408)
Q Consensus       171 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~  242 (408)
                      .+...|...+......+   +......+...+..    ..+.+.|...++.....|..   .....+...+.    ....
T Consensus        52 ~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~  125 (265)
T d1ouva_          52 KNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRD  125 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCC
T ss_pred             hhHHHHHHhhccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccch
Confidence            35555555555555554   23333333333332    34555666666665554432   11111212222    1233


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc----CchhhhHHHHHHHHHHhcccCccchHHHHHHHHHh----cCC
Q 015370          243 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA----SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGN  314 (408)
Q Consensus       243 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~  314 (408)
                      ...+...+......    .+...+..|...|...    .+...+.. .+....+.   .+......|...|..    ..+
T Consensus       126 ~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~-~~~~a~~~---g~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         126 FKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALA-SYDKACDL---KDSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHT---TCHHHHHHHHHHHHHTCSSCCC
T ss_pred             hHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchh-hhhccccc---cccccccchhhhcccCcccccc
Confidence            44555555554442    3444555565655542    22333333 33333222   234444455544544    457


Q ss_pred             HHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 015370          315 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSA  364 (408)
Q Consensus       315 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~  364 (408)
                      +++|...|.+..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|
T Consensus       198 ~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         198 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             hhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            888888888776665   34455556666654    347888888888877766

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.33  E-value=4.7e-06  Score=58.79  Aligned_cols=93  Identities=8%  Similarity=-0.116  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015370          302 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS  381 (408)
Q Consensus       302 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~  381 (408)
                      +..+...+.+.|++++|...|++....... +...|..+..++.+.|++++|+..|++.++..  +.+...|..+...|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~   95 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT   95 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHH
Confidence            334566778889999999999988776432 56778888888999999999999999988864  457788888999999


Q ss_pred             hcCChHHHHHHHHHHH
Q 015370          382 DVGLTEKANEFHMLLL  397 (408)
Q Consensus       382 ~~g~~~~a~~~~~~m~  397 (408)
                      ..|++++|.+.+++.+
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999888764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.1e-06  Score=59.99  Aligned_cols=93  Identities=14%  Similarity=0.041  Sum_probs=51.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ---VEKVALVVEEIKRKNVVPDI-FTYNLWISSC  237 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~  237 (408)
                      .+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++   +++|..+|+++...+..|+. .++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45555555666666666666666554 3455566666666655433   33466666665554333332 2445555566


Q ss_pred             HhcCCHHHHHHHHHHHhc
Q 015370          238 AATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       238 ~~~g~~~~a~~~~~~~~~  255 (408)
                      .+.|++++|.+.|+++.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            666666666666666655

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.21  E-value=9.2e-06  Score=57.21  Aligned_cols=87  Identities=11%  Similarity=-0.049  Sum_probs=42.9

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015370          164 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI  243 (408)
Q Consensus       164 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  243 (408)
                      ...+.+.|++++|+..|++..... |-+..+|..+..++.+.|++++|...|++..+.... +...+..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence            334444555555555555554443 223445555555555555555555555555443221 344444455555555555


Q ss_pred             HHHHHHHHH
Q 015370          244 DQVKKFLDE  252 (408)
Q Consensus       244 ~~a~~~~~~  252 (408)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=7.4e-06  Score=58.61  Aligned_cols=94  Identities=16%  Similarity=-0.006  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhc---ChHHHHHHHhcCCCCCCC---HHHHHHHHH
Q 015370           92 RHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVF---GIHSGERYFEGLPLSAKT---SETYTALLH  165 (408)
Q Consensus        92 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~---~~~~~~ll~  165 (408)
                      ..+++.+...+++++|.+.|+...+.+  +.++.++..+..++.+.+   ++++|+.+|+++....|+   ..+|..|..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            345666667777777777777777764  455666666666665533   344566666665554332   235666666


Q ss_pred             HHHcCCCHHHHHHHHHHHHhCC
Q 015370          166 LYAGAKWTEKAEELFERVKQSN  187 (408)
Q Consensus       166 ~~~~~~~~~~A~~~~~~m~~~~  187 (408)
                      +|.+.|++++|++.|+++++..
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhHHHHHHHHHHHHhC
Confidence            6777777777777777766643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.6e-05  Score=57.13  Aligned_cols=61  Identities=2%  Similarity=-0.124  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      +|+.+..+|.+.|++++|+..++..+..... +..++..+..++...|++++|...|+...+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3445555566666666666666665554321 455555555666666666666666666555

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.04  E-value=0.0025  Score=53.55  Aligned_cols=215  Identities=8%  Similarity=-0.022  Sum_probs=134.6

Q ss_pred             CCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 015370          121 VLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT  200 (408)
Q Consensus       121 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~  200 (408)
                      .|+...-..+.+.|.+.|.++.|..+|..+..       |..++..+.+.++++.|.+++.+.   +   +..+|..+..
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~~   77 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCF   77 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHHH
Confidence            45666666778889999999999999998875       777888899999999998887644   2   5779999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchh
Q 015370          201 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV  280 (408)
Q Consensus       201 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  280 (408)
                      .+.+......+     ++...+...+......++..|-..|.+++...+++....  .-..+...++-++..|++.+.. 
T Consensus        78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~~~-  149 (336)
T d1b89a_          78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ-  149 (336)
T ss_dssp             HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHH-
T ss_pred             HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhChH-
Confidence            99988776543     333444455666777899999999999999999998765  2356777889999999987643 


Q ss_pred             hhHHHHHHHHHHhcccC-------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 015370          281 NAESSTLVEAEKSITQR-------QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV  353 (408)
Q Consensus       281 ~a~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  353 (408)
                      +-.+ .+......-..|       ....|.-++..|.+.|+++.|..+.-.     -.++.......+..+.+..+.+..
T Consensus       150 kl~e-~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~  223 (336)
T d1b89a_         150 KMRE-HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELY  223 (336)
T ss_dssp             HHHH-HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHH
T ss_pred             HHHH-HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHH
Confidence            3333 232211110000       122345555666666666666554321     133444455566777777777776


Q ss_pred             HHHHHHHHh
Q 015370          354 GEIIDQWKQ  362 (408)
Q Consensus       354 ~~~~~~~~~  362 (408)
                      .+++.-..+
T Consensus       224 ~~~i~~yL~  232 (336)
T d1b89a_         224 YRAIQFYLE  232 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.00023  Score=53.96  Aligned_cols=129  Identities=6%  Similarity=-0.149  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHH
Q 015370          229 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL  308 (408)
Q Consensus       229 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  308 (408)
                      .+......+.+.|++++|+..|++..+.....+...              .... . ....+       ...+|+.+..+
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~-~-~~~~~-------~~~~~~nla~~   71 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEA-Q-KAQAL-------RLASHLNLAMC   71 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHH-H-HHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHH-h-hhchh-------HHHHHHHHHHH
Confidence            444555677888888888888888776322111100              0000 0 11111       12356778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015370          309 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV  383 (408)
Q Consensus       309 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  383 (408)
                      |.+.|++++|+..++......+. +...|..+..+|...|++++|...|++..+..  +-|......+-.+..+.
T Consensus        72 y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          72 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHH
T ss_pred             HHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Confidence            89999999999999988876432 67778888899999999999999999988864  23555555554444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.3e-05  Score=55.09  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC-----hhhHHH
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT-----SRNYIC  339 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-----~~~~~~  339 (408)
                      +..+...+.+.|++++|+. .+.+..+..+. +...|..+..+|.+.|++++|++.+++..+.... +.     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~-~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALK-HYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHH-HHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            4566777888888888888 77777766543 6777888888888888888888888876654321 11     124556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          340 ILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       340 li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      +...+...+++++|...|++....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            666777778888888888777654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.95  E-value=0.00015  Score=54.87  Aligned_cols=82  Identities=5%  Similarity=-0.021  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY  273 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  273 (408)
                      .|+.+..+|.+.|++++|+..++....... .+..+|..+..++...|++++|...|+++...  .|.+......+-...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            445556666677777777777777666432 25566666667777777777777777776652  234444444444444


Q ss_pred             HHcCc
Q 015370          274 ITASH  278 (408)
Q Consensus       274 ~~~~~  278 (408)
                      .+.+.
T Consensus       143 ~~~~~  147 (168)
T d1kt1a1         143 KKAKE  147 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.91  E-value=0.00029  Score=52.35  Aligned_cols=61  Identities=8%  Similarity=-0.048  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          194 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       194 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      +|+.+..+|.+.|++++|++.++...+... .+..+|..+..++...|++++|...|++..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            444555555566666666666665555422 2445555555666666666666666655554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=8.6e-05  Score=56.89  Aligned_cols=68  Identities=9%  Similarity=-0.013  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hcCCCCCC
Q 015370          336 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL-----QKNCAPTN  405 (408)
Q Consensus       336 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~  405 (408)
                      .+..+...+...|++++|...++++.+..  +-+...|..++.+|.+.|++++|++.|+++.     +.|+.|+.
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            45667788888888888888888888764  4577888888888888888888888888874     35888864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.87  E-value=0.0002  Score=53.19  Aligned_cols=95  Identities=12%  Similarity=-0.006  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc---------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 015370          266 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---------------WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ  330 (408)
Q Consensus       266 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  330 (408)
                      +..-...+.+.|++.+|.. .+...........               ..+|+.+..+|.+.|++++|++.+....+..+
T Consensus        20 ~~~~G~~~f~~~~y~~A~~-~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIV-KYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-HHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHH-HHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            4445566777777777777 6666554322111               11333444444555555555555554444321


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          331 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ  362 (408)
Q Consensus       331 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  362 (408)
                       .+...|..+..++...|++++|...|++..+
T Consensus        99 -~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          99 -NNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence             1344444555555555555555555555444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.6e-06  Score=75.83  Aligned_cols=226  Identities=9%  Similarity=-0.048  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhccCCCCC-hHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 015370          106 HALEISEWMVTHKEFVLS-DSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERV  183 (408)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m  183 (408)
                      +|.+.|++..+.   +|+ ...+..+..++...+++++|   |+++....|+ ...++..-... + ..+..+.+.++..
T Consensus         4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw-~-~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW-N-HAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH-H-HHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH-H-HHHHHHHHHHHHh
Confidence            677888888764   344 34556666777777877776   4444322232 11121111111 1 1245566777776


Q ss_pred             HhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 015370          184 KQSNLSFNALMYNEMMTLYM--SVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS  260 (408)
Q Consensus       184 ~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  260 (408)
                      .+..-.++..-....+..+.  ..+.++.++..++...+  +.| +...+..+...+.+.|+.+.|...++.....    
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----  149 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----  149 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHH----
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----
Confidence            65543344333332222222  23445555544443333  233 4556667777788888888888777665541    


Q ss_pred             CCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHH
Q 015370          261 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI  340 (408)
Q Consensus       261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  340 (408)
                      ....++..+...+...|++++|.. .+.+..+..+. +...|+.|...+...|+..+|...|.+..... .|-..++..|
T Consensus       150 ~~~~~~~~LG~l~~~~~~~~~A~~-~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL  226 (497)
T d1ya0a1         150 ICQHCLVHLGDIARYRNQTSQAES-YYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence            123457778888889999999999 78777666543 77889999999999999999999888877654 3556667777


Q ss_pred             HHHHHhcC
Q 015370          341 LSSYLMLG  348 (408)
Q Consensus       341 i~~~~~~g  348 (408)
                      ...+.+..
T Consensus       227 ~~~~~~~~  234 (497)
T d1ya0a1         227 QKALSKAL  234 (497)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.84  E-value=0.00021  Score=54.18  Aligned_cols=93  Identities=9%  Similarity=-0.056  Sum_probs=48.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCC--------------C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015370          162 ALLHLYAGAKWTEKAEELFERVKQSN--------------L-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD  226 (408)
Q Consensus       162 ~ll~~~~~~~~~~~A~~~~~~m~~~~--------------~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  226 (408)
                      .....+.+.|++++|++.|.+.++..              + +.+...|..+..++.+.|++++|+..++...+... .+
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~  110 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SN  110 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hh
Confidence            34445556666666666665543210              0 11233444455555555666666665555555432 13


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 015370          227 IFTYNLWISSCAATLNIDQVKKFLDEMSC  255 (408)
Q Consensus       227 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  255 (408)
                      ..+|..+..++...|++++|.+.|++..+
T Consensus       111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         111 TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            45555555555555666666555555555

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=0.00012  Score=56.11  Aligned_cols=120  Identities=9%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             HHHHHHhcccHHHHHHHHHHHHhc--cCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCC
Q 015370           94 ILKELRKSQRYKHALEISEWMVTH--KEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAK  171 (408)
Q Consensus        94 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~  171 (408)
                      ........|++++|.+.|......  |.+.++.             ...+.+...-..+.  ......+..+...+.+.|
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~-------------~~~~w~~~~r~~l~--~~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-------------RDFQFVEPFATALV--EDKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-------------TTSTTHHHHHHHHH--HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC-------------cchHHHHHHHHHHH--HHHHHHHHHHHHHHHHCC
Confidence            345667778888888888887764  2111110             00000000000000  012456677777788888


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 015370          172 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK-----RKNVVPDIFT  229 (408)
Q Consensus       172 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~  229 (408)
                      ++++|+..++++.... +-+...|..++.+|.+.|+.++|++.|+++.     +.|+.|...+
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            8888888888877765 4567778888888888888888888887764     3477776544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00017  Score=51.80  Aligned_cols=94  Identities=9%  Similarity=-0.014  Sum_probs=53.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCc------cchHHHH
Q 015370          232 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ------WITYDFL  305 (408)
Q Consensus       232 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l  305 (408)
                      .+...+.+.|++++|+..|++..+.  .+.+...+..+..+|.+.|++++|.. .+..+.+..+...      ..+|..+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~-~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRE-LCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3445555666666666666665552  23455556666666666666666666 5555444322211      1245555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc
Q 015370          306 IILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       306 i~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ...+...+++++|.+.|......
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            66666677777777777665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.79  E-value=0.00035  Score=52.82  Aligned_cols=82  Identities=6%  Similarity=-0.123  Sum_probs=62.4

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015370          298 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL  377 (408)
Q Consensus       298 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li  377 (408)
                      ....|..+..++.+.|++++|+..+.+..+.... +...|..+..++...|++++|+..|++..+..  +.+...+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~  152 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            4456777888889999999999999988876432 66678888999999999999999999998864  34666665555


Q ss_pred             HHHHh
Q 015370          378 GAFSD  382 (408)
Q Consensus       378 ~~~~~  382 (408)
                      .+..+
T Consensus       153 ~~~~~  157 (169)
T d1ihga1         153 KVKQK  157 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.72  E-value=0.0013  Score=49.55  Aligned_cols=94  Identities=6%  Similarity=-0.017  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015370          300 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA  379 (408)
Q Consensus       300 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~  379 (408)
                      ..|+.+..+|.+.|++++|+..++....... .+...|..+..++...|++++|...|++..+..  +.+...+..+-..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~  141 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            3566788888999999999999998887643 367778888899999999999999999998743  3456666555555


Q ss_pred             HHhcCChH-HHHHHHHHH
Q 015370          380 FSDVGLTE-KANEFHMLL  396 (408)
Q Consensus       380 ~~~~g~~~-~a~~~~~~m  396 (408)
                      ..+.+... ...+++..|
T Consensus       142 ~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            44444333 234444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.60  E-value=0.00012  Score=59.91  Aligned_cols=123  Identities=11%  Similarity=0.072  Sum_probs=76.6

Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 015370          167 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQ  245 (408)
Q Consensus       167 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~  245 (408)
                      ..+.|++++|+..+++.++.. |-|...+..+...++..|++++|...|+...+.  .|+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            345688888888888888775 567788888888888888888888888888775  343 3444444444433333333


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhc
Q 015370          246 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI  294 (408)
Q Consensus       246 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  294 (408)
                      +..-...... .+-++....+......+.+.|+.++|.+ .+..+.+..
T Consensus        83 a~~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~-~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSE-LALQIEELR  129 (264)
T ss_dssp             HTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC
T ss_pred             HHHHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhcC
Confidence            2221111111 1222333444555666777788888888 676666544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00048  Score=62.10  Aligned_cols=168  Identities=7%  Similarity=-0.166  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhccCCCCChHHHHH--HHHHHHhhcChHHHHHHHhcCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 015370          104 YKHALEISEWMVTHKEFVLSDSDYAT--RIDLMTKVFGIHSGERYFEGLPLS-AKTSETYTALLHLYAGAKWTEKAEELF  180 (408)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~  180 (408)
                      +..+.+.++...+.. ..++..-...  +.......+.++.|+..+...... .++...+..+...+.+.|+.++|...+
T Consensus        65 y~~~ie~~r~~~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~  143 (497)
T d1ya0a1          65 FKNQITTLQGQAKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQ  143 (497)
T ss_dssp             THHHHHHHHHHHSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------C
T ss_pred             HHHHHHHHHHhcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence            445566666655443 2233222221  122233456677777777665443 345677888888888889998888888


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 015370          181 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS  260 (408)
Q Consensus       181 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  260 (408)
                      .......   ...++..+...+...|++++|...|++..+.... +...|+.+...+...|+..+|...|.+...  -.+
T Consensus       144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~  217 (497)
T d1ya0a1         144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKF  217 (497)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSB
T ss_pred             HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCC
Confidence            7766542   2357778888889999999999999988875432 567888899999999999999999988887  346


Q ss_pred             CCHHHHHHHHHHHHHcCc
Q 015370          261 DDWVKYVNLVNIYITASH  278 (408)
Q Consensus       261 ~~~~~~~~li~~~~~~~~  278 (408)
                      |-..++..|...+.+..+
T Consensus       218 ~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         218 PFPAASTNLQKALSKALE  235 (497)
T ss_dssp             CCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            778888888888776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.46  E-value=5.4e-05  Score=61.98  Aligned_cols=55  Identities=11%  Similarity=-0.045  Sum_probs=32.6

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCC
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAK  155 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  155 (408)
                      .+.|++++|++.+++..+..  +-+...+..+...++..|++++|.+.|+......|
T Consensus         7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            34566666666666666643  44455666666666666666666666665544433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.43  E-value=0.00028  Score=51.83  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=66.7

Q ss_pred             HHhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 015370           98 LRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAE  177 (408)
Q Consensus        98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~  177 (408)
                      |-+.+.+++|++.|+...+..  +.++..+..+..++...+++..+.+-                       .+.+++|+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~-----------------------~~~~~~Ai   61 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDA-----------------------KQMIQEAI   61 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHH-----------------------HHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHH-----------------------HHHHHHHH
Confidence            445677899999999998864  55677888888887766555433321                       12345566


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015370          178 ELFERVKQSNLSFNALMYNEMMTLYMSVG-----------QVEKVALVVEEIKRKNVVPDIFTYNLWISSC  237 (408)
Q Consensus       178 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  237 (408)
                      ..|++.++.+ |.+..+|..+..+|...|           .+++|.+.|+...+  +.|+...|..-+..+
T Consensus        62 ~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          62 TKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence            6666655543 334555655555555433           24566666666665  345555555444444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=0.00062  Score=49.91  Aligned_cols=127  Identities=11%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 015370          237 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD  316 (408)
Q Consensus       237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  316 (408)
                      |-+.+.+++|...|+...+.  .|.+...+..+..++...+++..+.+                          ..+.++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~   58 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ   58 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence            34556677777777777662  35566666666666665544433332                          112334


Q ss_pred             HHHHHHHHHHhccCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015370          317 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLG-----------HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL  385 (408)
Q Consensus       317 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  385 (408)
                      +|++.|++..+..+. +..+|..+..+|...|           .+++|.+.|++..+.   .|+...|..-+..+     
T Consensus        59 ~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~-----  129 (145)
T d1zu2a1          59 EAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT-----  129 (145)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH-----
Confidence            566666655554321 3445555555555433           468888899988874   45555554443333     


Q ss_pred             hHHHHHHHHHHHhcCC
Q 015370          386 TEKANEFHMLLLQKNC  401 (408)
Q Consensus       386 ~~~a~~~~~~m~~~g~  401 (408)
                       ..|.+++.+..+.|+
T Consensus       130 -~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         130 -AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             -HTHHHHHHHHHHSSS
T ss_pred             -HHHHHHHHHHHHHhc
Confidence             456777777777664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.24  E-value=0.0016  Score=48.22  Aligned_cols=98  Identities=14%  Similarity=-0.004  Sum_probs=65.2

Q ss_pred             hHHHH--HHHHHhcCCHHHHHHHHHHHHhccCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 015370          301 TYDFL--IILYAGLGNKDKIDQIWKSLRMTKQK-MT----------SRNYICILSSYLMLGHLKEVGEIIDQWKQS----  363 (408)
Q Consensus       301 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~-p~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----  363 (408)
                      +|..+  ...+...|++++|++.|++..+.... |+          ...|+.+..+|...|++++|...+++..+.    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  33455667788888877776553221 11          235667788888888888888888877642    


Q ss_pred             CCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          364 ATSDFD-----ISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       364 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      ....++     ...|+.+..+|...|++++|.+.|++.++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            111222     22466778889999999999999988765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.12  E-value=0.0031  Score=46.57  Aligned_cols=24  Identities=13%  Similarity=-0.144  Sum_probs=12.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 015370          338 ICILSSYLMLGHLKEVGEIIDQWK  361 (408)
Q Consensus       338 ~~li~~~~~~g~~~~A~~~~~~~~  361 (408)
                      ..+..+|...|++++|+..|++..
T Consensus       104 ~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         104 YSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0021  Score=42.92  Aligned_cols=72  Identities=7%  Similarity=-0.135  Sum_probs=43.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccC-----CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015370          303 DFLIILYAGLGNKDKIDQIWKSLRMTKQ-----KMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL  376 (408)
Q Consensus       303 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  376 (408)
                      ..+...+.+.|++++|...|++..+...     .++ ..++..+..++.+.|++++|+..+++..+..  +-+..+++.+
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~Nl   86 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence            3566667777777777777776554321     111 2346667777777777777777777777643  2244444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.018  Score=38.08  Aligned_cols=63  Identities=10%  Similarity=0.025  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015370          159 TYTALLHLYAGAKWTEKAEELFERVKQSN-----LSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRK  221 (408)
Q Consensus       159 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  221 (408)
                      .+-.+...+.+.|++++|...|++..+..     ..+ ...+++.+..+|.+.|++++|...+++..+.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            33445555666666666666666544321     011 1345566666666666666666666666553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.45  E-value=0.067  Score=36.64  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 015370          333 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC  401 (408)
Q Consensus       333 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  401 (408)
                      +...+...++.+.++|+-+.-.++++++.+.+  +|++...-.+..+|.+.|...++.+++.+.-+.|+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            34445556666777777777777777766544  45666666677777777777777777777777665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.21  E-value=0.095  Score=35.89  Aligned_cols=121  Identities=12%  Similarity=0.071  Sum_probs=70.9

Q ss_pred             HhcccHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcChHHHHHHHhcCCCC-------------------CCCHHH
Q 015370           99 RKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLS-------------------AKTSET  159 (408)
Q Consensus        99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~  159 (408)
                      .-.|.+++..++..+.....    +..-||..|.-....-+-+...+.++.+-+.                   +.+..-
T Consensus        13 ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~   88 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   88 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHH
Confidence            34567777777777776542    4555666665555555555555555543321                   123444


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015370          160 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV  224 (408)
Q Consensus       160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  224 (408)
                      .+..++.+.++|.-++-.+++.++.+.+ +|++...-.+..+|.+.|...++.+++.+..+.|++
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            4555666666666666666666655543 555666666666666666666666666666666654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.99  E-value=0.067  Score=37.73  Aligned_cols=17  Identities=12%  Similarity=0.042  Sum_probs=11.8

Q ss_pred             ccHHHHHHHHHHHHhcc
Q 015370          102 QRYKHALEISEWMVTHK  118 (408)
Q Consensus       102 ~~~~~a~~~~~~~~~~~  118 (408)
                      .++++|++.|++..+.|
T Consensus         7 kd~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHCC
Confidence            46677777777776665

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.12  E-value=0.31  Score=34.01  Aligned_cols=82  Identities=13%  Similarity=-0.034  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 015370          313 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD----VG  384 (408)
Q Consensus       313 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g  384 (408)
                      .+.++|.+++++.-+.|   ++.....|...|..    ..+.++|.++|++..+.+    +......|...|..    ..
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCC
Confidence            45556666666555444   22333333333332    345677777777776654    23334445444544    34


Q ss_pred             ChHHHHHHHHHHHhcCC
Q 015370          385 LTEKANEFHMLLLQKNC  401 (408)
Q Consensus       385 ~~~~a~~~~~~m~~~g~  401 (408)
                      +.++|.++|++..+.|.
T Consensus       110 d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHCCC
Confidence            67777777777766654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.27  Score=33.73  Aligned_cols=67  Identities=6%  Similarity=-0.085  Sum_probs=38.3

Q ss_pred             cCccchHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 015370          296 QRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQS  363 (408)
Q Consensus       296 ~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~  363 (408)
                      .+...|--....++.+..   +.++++.++++..+.+. .+. ..+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            344445445555555443   34567777776665421 122 23445566677777777777777777764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.85  E-value=1.6  Score=29.71  Aligned_cols=67  Identities=15%  Similarity=0.021  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHcC---chhhhHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015370          261 DDWVKYVNLVNIYITAS---HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT  328 (408)
Q Consensus       261 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  328 (408)
                      ++..+--...-++.++.   +.++++. +++.+.+..+......+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~-lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVK-ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHH-HHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            44445445555555543   4567777 7777776544323356667777888888888888888887775

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.07  E-value=1.1  Score=28.92  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015370          314 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG  378 (408)
Q Consensus       314 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~  378 (408)
                      +.-++.+-+..+....+.|++....+.+++|-+.+++.-|.++|+-.+.+..  ++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            4556777777788888899999999999999999999999999998887653  23445655543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.75  E-value=1.9  Score=27.67  Aligned_cols=48  Identities=6%  Similarity=0.070  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015370          173 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR  220 (408)
Q Consensus       173 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  220 (408)
                      .=++.+-++.+-..++.|++....+.+.+|.+.+++..|.++|+..+.
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334555555555555666666666666666666666666666655553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=6.9  Score=33.31  Aligned_cols=252  Identities=10%  Similarity=-0.010  Sum_probs=134.7

Q ss_pred             HHHHHHHHhhcChHHHHHHHhcCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 015370          128 ATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ  207 (408)
Q Consensus       128 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  207 (408)
                      ...+..+.+.++++.....+..   .+.+...-..+..+..+.|+.++|...+..+=..| ......+..+...+.+.|.
T Consensus        76 ~~~l~~L~~~~~w~~~~~~~~~---~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~  151 (450)
T d1qsaa1          76 SRFVNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK  151 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCC
Confidence            3446677888888776665543   23566666778888888999999888887766555 2344555666665555544


Q ss_pred             HH--HHHHHHHHHHhCC-----------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 015370          208 VE--KVALVVEEIKRKN-----------VVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY  273 (408)
Q Consensus       208 ~~--~a~~~~~~m~~~g-----------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  273 (408)
                      +.  ....-+..+...|           +.++ .......+....   +...+......      ..++......+..++
T Consensus       152 lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~------~~~~~~~~~~~~~~l  222 (450)
T d1qsaa1         152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART------TGATDFTRQMAAVAF  222 (450)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH------SCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc------CCCChhhhHHHHHHH
Confidence            32  1112222222221           1111 122222332222   22222222211      112333333333333


Q ss_pred             HH--cCchhhhHHHHHHHHHHhcccCccchHHH----HHHHHHhcCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 015370          274 IT--ASHLVNAESSTLVEAEKSITQRQWITYDF----LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML  347 (408)
Q Consensus       274 ~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  347 (408)
                      .+  ..+.+.+.. .+........... .-+..    +.......+..+.+...+......+  .+.......+......
T Consensus       223 ~rla~~d~~~a~~-~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~  298 (450)
T d1qsaa1         223 ASVARQDAENARL-MIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT  298 (450)
T ss_dssp             HHHHHHCHHHHHH-HHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred             HHHhccChhHHHH-HHHhhhhcccccH-HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHc
Confidence            33  245666777 5665544332221 11212    2222234566677777776655443  2444444455666678


Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 015370          348 GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ  398 (408)
Q Consensus       348 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  398 (408)
                      +++..+...+..|.....  ....-.-=+..++...|+.+.|..+|.....
T Consensus       299 ~~~~~~~~~~~~l~~~~~--~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             TCHHHHHHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHhcCcccc--cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            899999999988754321  1222222367888999999999999988754