Citrus Sinensis ID: 015383

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGILALYVALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
ccccEEEEcHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccc
ccEEEEEEcccHHcccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHcHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccEccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHcHHcccccccccEEEcc
MGILALYVALFTVLTAvsdgrrseyredgisvdirlpVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAmdsglhplvpyFTYFISEEVTRSLKNFSLLFALMRVARSLlrnphihiepylhqmmPSVITCLVSkrlgnrfsdnhWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAfldptkslsQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAaglcvydrlktvllrppkqsrwesnrkgmivfpskrkasmdnlmlqppvkkmatlgpmgvmpvnsmavnmqgpsggfstpvegprAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFgesmfsftrkselyffl
MGILALYVALFTVltavsdgrrseyredgisvdirlpvkHVLSKELQLYFDKIReltvsrsnSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLlrppkqsrwesnrkgmivfpskrkasmdNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
MGILALYVALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
**ILALYVALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLR***********************************************************************************************TSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFF*
**ILALYVA*****************************KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLE****************AWRVYGALQCAAGLCV********************************************************************************************************************DAEGGHLLASLYELFGESMFSFTRKSELYFFL
MGILALYVALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
MGILALYVALFTVLTAV*************SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMI*********************************************************************************STVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGILALYVALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
O74462452 Transcription initiation yes no 0.561 0.506 0.435 7e-50
Q91857618 Transcription initiation N/A no 0.441 0.291 0.445 2e-37
P49847606 Transcription initiation yes no 0.492 0.331 0.414 1e-36
Q63801678 Transcription initiation yes no 0.502 0.302 0.394 1e-36
Q62311678 Transcription initiation yes no 0.502 0.302 0.394 1e-36
P49848677 Transcription initiation yes no 0.5 0.301 0.391 2e-36
P53040516 Transcription initiation yes no 0.490 0.387 0.372 9e-34
Q8R2K4616 TAF6-like RNA polymerase no no 0.517 0.342 0.305 2e-20
Q9Y6J9 622 TAF6-like RNA polymerase no no 0.517 0.339 0.305 2e-19
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1 Back     alignment and function desciption
 Score =  198 bits (503), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 156/241 (64%), Gaps = 12/241 (4%)

Query: 15  TAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLA 74
           TA  + R      D  +V+I+  V+HVLSKELQLYF++I    +  +N  +   AL SL 
Sbjct: 167 TAAKEARNGVTSMD--NVEIKPLVRHVLSKELQLYFERITSALLDETNVELRDAALSSLR 224

Query: 75  MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVI 134
            D GLH L+PYF  F+S+ VTR+L N  +L  LM +A +LL NP++ +EPY+ Q+MPS++
Sbjct: 225 DDPGLHQLLPYFIMFLSDSVTRNLGNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSIL 284

Query: 135 TCLVSKRLGNRFSDN-HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKS 193
           TCLV+KRLG+  +++ H+ LR+  A L+  +C RFG+VY  L+ RVTRT L AFLD TK 
Sbjct: 285 TCLVAKRLGSDPNNHEHYALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKP 344

Query: 194 LSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 253
            S HYGAI+GL  +G   + +L++PN+++Y      E+L+ K    +++     +Y A +
Sbjct: 345 YSTHYGAIKGLKTMGKEAIRVLVVPNIKVY------EVLVRKT---LEKGNEEEIYEANK 395

Query: 254 C 254
           C
Sbjct: 396 C 396
TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3 Back     alignment and function description
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2 Back     alignment and function description
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=2 SV=1 Back     alignment and function description
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=2 SV=1 Back     alignment and function description
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1 Back     alignment and function description
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1 Back     alignment and function description
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
225460839 543 PREDICTED: transcription initiation fact 0.977 0.734 0.685 1e-158
297737507 547 unnamed protein product [Vitis vinifera] 0.977 0.729 0.676 1e-156
224056415 529 predicted protein [Populus trichocarpa] 0.933 0.720 0.670 1e-151
255580776468 transcription initiation factor tfiid, p 0.968 0.844 0.678 1e-145
225446952 543 PREDICTED: transcription initiation fact 0.977 0.734 0.594 1e-137
356499648 544 PREDICTED: transcription initiation fact 0.970 0.727 0.598 1e-136
242044226446 hypothetical protein SORBIDRAFT_02g02025 0.958 0.876 0.586 1e-135
219887973 545 unknown [Zea mays] gi|413956299|gb|AFW88 0.958 0.717 0.581 1e-134
356567236440 PREDICTED: uncharacterized protein LOC10 0.977 0.906 0.587 1e-134
115436920 541 Os01g0510800 [Oryza sativa Japonica Grou 0.968 0.730 0.583 1e-134
>gi|225460839|ref|XP_002276969.1| PREDICTED: transcription initiation factor TFIID subunit 6-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 279/407 (68%), Positives = 328/407 (80%), Gaps = 8/407 (1%)

Query: 9   ALFTVLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQ 68
           A    L   SD ++SEY+EDG+ VD +LPVKHVLS+ELQLYFDKI+ELT+SRS+S +FK+
Sbjct: 138 APIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFDKIKELTLSRSDSILFKE 197

Query: 69  ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQ 128
           AL+SLA DSG+HPLVPYFTYFI++EVTR+L +FS+LFALMRVARSLL+N  IHIEPYLHQ
Sbjct: 198 ALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVARSLLQNQQIHIEPYLHQ 257

Query: 129 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 188
           +MPS+ITCLV+KRLG+RFSDNHW+LR+F A+L+AS+C R+GHVY NLQ RVTRTLLHAFL
Sbjct: 258 LMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHVYHNLQPRVTRTLLHAFL 317

Query: 189 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRV 248
           DPTK+L QHYGAIQGLAA GPSVV LLILPNLE YL+ LEPEM LEKQKN MKRHEAWRV
Sbjct: 318 DPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEMQLEKQKNGMKRHEAWRV 377

Query: 249 YGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKK 306
           YGAL CAAG C+YDRLKT   LL PP ++  +SN+K +   PSKRKAS DNLM QPP+KK
Sbjct: 378 YGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPSKRKASTDNLMQQPPLKK 437

Query: 307 MATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGV---SMLRHLQNEKML--RREVSN 361
           +AT G MGVMP+NS+AV+ QG +GGFST      + V   SM + L +E +   RREV  
Sbjct: 438 LATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSMSQQLASENISGGRREVGT 497

Query: 362 QALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL 408
           +ALK S VLAQAWK D   G L ASL+E FGESMF FT   EL  FL
Sbjct: 498 RALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFCFTPSPELSLFL 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737507|emb|CBI26708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056415|ref|XP_002298845.1| predicted protein [Populus trichocarpa] gi|222846103|gb|EEE83650.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580776|ref|XP_002531209.1| transcription initiation factor tfiid, putative [Ricinus communis] gi|223529211|gb|EEF31186.1| transcription initiation factor tfiid, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225446952|ref|XP_002264290.1| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis vinifera] gi|297739126|emb|CBI28777.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499648|ref|XP_003518649.1| PREDICTED: transcription initiation factor TFIID subunit 6-like [Glycine max] Back     alignment and taxonomy information
>gi|242044226|ref|XP_002459984.1| hypothetical protein SORBIDRAFT_02g020250 [Sorghum bicolor] gi|241923361|gb|EER96505.1| hypothetical protein SORBIDRAFT_02g020250 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|219887973|gb|ACL54361.1| unknown [Zea mays] gi|413956299|gb|AFW88948.1| putative TATA binding protein family protein [Zea mays] Back     alignment and taxonomy information
>gi|356567236|ref|XP_003551827.1| PREDICTED: uncharacterized protein LOC100803416 [Glycine max] Back     alignment and taxonomy information
>gi|115436920|ref|NP_001043168.1| Os01g0510800 [Oryza sativa Japonica Group] gi|20804496|dbj|BAB92191.1| putative TAF6 [Oryza sativa Japonica Group] gi|113532699|dbj|BAF05082.1| Os01g0510800 [Oryza sativa Japonica Group] gi|215768003|dbj|BAH00232.1| unnamed protein product [Oryza sativa Japonica Group] gi|222618539|gb|EEE54671.1| hypothetical protein OsJ_01969 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2010667549 TAFII59 "TATA BOX ASSOCIATED F 0.963 0.715 0.518 2.3e-101
DICTYBASE|DDB_G0288471542 taf6 "TATA-binding protein-ass 0.551 0.415 0.475 9.9e-54
POMBASE|SPCC16C4.18c452 taf6 "histone H4-like TAF Taf6 0.688 0.621 0.414 2.5e-49
ASPGD|ASPL0000017134445 AN8232 [Emericella nidulans (t 0.534 0.489 0.388 2.4e-37
CGD|CAL0005584519 TAF60 [Candida albicans (taxid 0.504 0.396 0.371 5.1e-35
UNIPROTKB|Q5A2V7519 TAF6 "Putative uncharacterized 0.504 0.396 0.371 5.1e-35
FB|FBgn0010417606 Taf6 "TBP-associated factor 6" 0.492 0.331 0.414 1.8e-34
UNIPROTKB|Q91857618 taf6 "Transcription initiation 0.441 0.291 0.445 2.6e-34
UNIPROTKB|G8JLM6601 TAF6 "Transcription initiation 0.497 0.337 0.398 8.1e-34
UNIPROTKB|Q58DG7678 TAF6 "TBP-associated factor 6 0.502 0.302 0.399 8.8e-34
TAIR|locus:2010667 TAFII59 "TATA BOX ASSOCIATED FACTOR II 59" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 213/411 (51%), Positives = 282/411 (68%)

Query:    13 VLTAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLS 72
             V+ A ++ +  E ++DG  +D+RLPVKHVLS+ELQLYF KI EL +S+SN  ++K+AL+S
Sbjct:   142 VIRAPAETKIHE-QKDGPLIDVRLPVKHVLSRELQLYFQKIAELAMSKSNPPLYKEALVS 200

Query:    73 LAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPS 132
             LA DSGLHPLVPYFT FI++EV+  L +F LLF LM + RSLL+NPHIHIEPYLHQ+MPS
Sbjct:   201 LASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSLLQNPHIHIEPYLHQLMPS 260

Query:   133 VITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTK 192
             V+TCLVS++LGNRF+DNHW+LR+F A+L++ IC R+G VY  LQSR+TRTL++A LDP K
Sbjct:   261 VVTCLVSRKLGNRFADNHWELRDFAANLVSLICKRYGTVYITLQSRLTRTLVNALLDPKK 320

Query:   193 SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGAL 252
             +L+QHYGAIQGLAALG +VV LLIL NLE YL  LEPE+  EKQKN+MK +EAWRVYGAL
Sbjct:   321 ALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMKIYEAWRVYGAL 380

Query:   253 QCAAGLCVYDRLKTVLLRP-PKQSRWESNR-KGMIVF--PSKRKASMDNLMLQPPVKKMA 308
               AAGLC++ RLK     P P  S     + KG I+   P KRK S+D+   Q P K++ 
Sbjct:   381 LRAAGLCIHGRLKIFPPLPSPSPSFLHKGKGKGKIISTDPHKRKLSVDSSENQSPQKRLI 440

Query:   309 TL-GPMGV----------MPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRR 357
             T+ GP GV          M V++   N   P      P    +A  +     +N K+ + 
Sbjct:   441 TMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQ-PSSSEQASDANESESRNGKV-KE 498

Query:   358 EVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL 408
                ++A+    +L Q WK+D + G LL  L+EL+G+ +  F   +E+  FL
Sbjct:   499 SGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRILPFIPSTEMSVFL 549
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS
GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA;ISS
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0009860 "pollen tube growth" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
DICTYBASE|DDB_G0288471 taf6 "TATA-binding protein-associated-factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC16C4.18c taf6 "histone H4-like TAF Taf6, SAGA complex subunit" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017134 AN8232 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0005584 TAF60 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A2V7 TAF6 "Putative uncharacterized protein TAF6" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
FB|FBgn0010417 Taf6 "TBP-associated factor 6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q91857 taf6 "Transcription initiation factor TFIID subunit 6" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G8JLM6 TAF6 "Transcription initiation factor TFIID subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DG7 TAF6 "TBP-associated factor 6 isoform alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027245001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (523 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034077001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (177 aa)
    ••• 0.772
GSVIVG00032691001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (676 aa)
    ••• 0.738
GSVIVG00024845001
RecName- Full=TATA-box-binding protein; (211 aa)
    ••• 0.637

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
cd08050343 cd08050, TAF6, TATA Binding Protein (TBP) Associat 5e-80
COG5095450 COG5095, TAF6, Transcription initiation factor TFI 3e-63
pfam0757192 pfam07571, DUF1546, Protein of unknown function (D 3e-36
>gnl|CDD|173968 cd08050, TAF6, TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information 
 Score =  249 bits (639), Expect = 5e-80
 Identities = 102/184 (55%), Positives = 131/184 (71%), Gaps = 3/184 (1%)

Query: 31  SVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFI 90
            V ++  V+HVLSKELQLYF++I E  V  SN    ++AL SL  D GL  L+PYF  FI
Sbjct: 161 QVLLKPLVRHVLSKELQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFI 219

Query: 91  SEEVTRSLK-NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SD 148
           +E VT +L  N +LL  LMR+ R+LL NP++H+EPYLHQ++PSV+TCLV+K+L +R   D
Sbjct: 220 AEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDD 279

Query: 149 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 208
           NHW LR++ A L+A IC +F   Y  LQ R+TRTLL A LDP K L+ HYGAI GL+ALG
Sbjct: 280 NHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339

Query: 209 PSVV 212
           P  V
Sbjct: 340 PEAV 343

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. These TAFs, with the help of specific activators, are required only for expression of a subset of genes and are not universally involved for transcription as are GTFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and is found in core histones, TAFs and many other transcription factors. TFIID has a histone octamer-like substructure. TAF6 is a shared subunit of histone acetyltransferase complex SAGA and TFIID complexes. TAF6 domain interacts with TAF9 and makes a novel histone-like heterodimer that is structurally related to histones H4 and H3. TAF6 may also interact with the downstream core promoter element (DPE). Length = 343
>gnl|CDD|227426 COG5095, TAF6, Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|203686 pfam07571, DUF1546, Protein of unknown function (DUF1546) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG2549576 consensus Transcription initiation factor TFIID, s 100.0
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 100.0
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 100.0
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 99.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.19
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.3
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 93.98
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.75
KOG1242569 consensus Protein containing adaptin N-terminal re 93.05
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 92.21
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.58
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 91.55
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 91.28
PF14911373 MMS22L_C: S-phase genomic integrity recombination 88.24
KOG0212 675 consensus Uncharacterized conserved protein [Funct 87.45
KOG1242569 consensus Protein containing adaptin N-terminal re 86.29
KOG1824 1233 consensus TATA-binding protein-interacting protein 85.16
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 85.05
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 83.51
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 81.9
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 81.25
PRK09687280 putative lyase; Provisional 81.14
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 80.23
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-73  Score=582.85  Aligned_cols=378  Identities=35%  Similarity=0.493  Sum_probs=318.1

Q ss_pred             CCCceeeecCCCcccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhc--cCCHHHH
Q 015383           27 EDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRS--LKNFSLL  104 (408)
Q Consensus        27 ~d~~~v~vKp~vkHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~n--l~nl~~L  104 (408)
                      ..|.++++||.++|+||+|||+||++||++|++ +|++.|++||++|+||+|||||||||++||+|+|+.|  ++|+..|
T Consensus       186 k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL  264 (576)
T KOG2549|consen  186 KIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELL  264 (576)
T ss_pred             ccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHH
Confidence            566899999999999999999999999999998 5677899999999999999999999999999999999  7999999


Q ss_pred             HHHHHHHHHHhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 015383          105 FALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL  183 (408)
Q Consensus       105 ~~LLrmv~ALL~Np~L~IepYLHqLlPsvLTCll~k~L~~~~-~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL  183 (408)
                      +++|+|++||++||+||+|||||+||||||||+|+|++|.++ .||||+||||||++++.||++|++.|.+|++||++||
T Consensus       265 ~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl  344 (576)
T KOG2549|consen  265 IYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTL  344 (576)
T ss_pred             HHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999985 7899999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHHhhHhhhhHhhhhhhhHhHHHHHHHHHHHhhhhhhhhh
Q 015383          184 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDR  263 (408)
Q Consensus       184 ~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g~~~~~~  263 (408)
                      .|+|+|+++++++|||||+||++||.++||.+|+|+|..|+..|++++..+..+|.+.+.||++||++|+.++..|+.++
T Consensus       345 ~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii~~~  424 (576)
T KOG2549|consen  345 SKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPIIRDK  424 (576)
T ss_pred             HHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh--ccCCCccccccccC-cccccCCCccccccccccCCCCccccccCCCC-Cccc--cCcccccCCCCCCCCCcccC
Q 015383          264 LKTV--LLRPPKQSRWESNR-KGMIVFPSKRKASMDNLMLQPPVKKMATLGPM-GVMP--VNSMAVNMQGPSGGFSTPVE  337 (408)
Q Consensus       264 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~  337 (408)
                      +...  ...|-.+..++..| +++.....+|+++-++..-.-|...++ ++|+ ..++  ...+.+.+.-+..|.|..+.
T Consensus       425 l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~~~~v~~~~~~~g~p~~~t  503 (576)
T KOG2549|consen  425 LNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTSTQQVSSPTEAPGSPSTST  503 (576)
T ss_pred             hccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCccccccccccccceecCCCCCCCCCccCC
Confidence            9988  44666778888888 899999999988755555555555555 3331 0000  01111222211112222222


Q ss_pred             CCCCcc--ch--hhhhhhhhhhhccccchhhhHHHHHHHHhhhccCccchhHHHHHHhccccccccCCccccccC
Q 015383          338 GPRAGV--SM--LRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL  408 (408)
Q Consensus       338 ~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~s~~l~q~Wkdd~~~g~ll~sl~elfGe~il~Fip~~E~s~fl  408 (408)
                      .|.+..  +-  -++.+  ..+.+.|-.++...-+..++.|+++.+++..|....+..+.+..+|.++.+++.|.
T Consensus       504 ~p~~~~~~~~~~~~~~~--~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~q~~~~~  576 (576)
T KOG2549|consen  504 GPVTSEVPSVVTESTSG--PKVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSGSPACGSKQESVDS  576 (576)
T ss_pred             CCcccCCCCcccccccC--CccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCccccccccccccCC
Confidence            221111  00  01111  13334446677778888999999999999999999999999999999999999763

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
4atg_A196 Taf6 C-Terminal Domain From Antonospora Locustae Le 6e-28
>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae Length = 196 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 10/184 (5%)
Query: 40  HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLK 99
           H+L KELQLYFDKI    +S   S +   A+  L  +SGL  LVPYF   ISE + +S K
Sbjct: 3   HMLPKELQLYFDKI----LSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSFK 58
Query: 100 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 159
              +L   + +  SL++N H+ I+PYLHQ++PS++TC++ K + +       D+R   AD
Sbjct: 59  EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSAD 112
Query: 160 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN 219
           ++  I   +   Y+ L  RV +TL   ++DP +S    YGA+  L+ L  +VV+ +I  +
Sbjct: 113 IVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREH 172
Query: 220 LELY 223
            E Y
Sbjct: 173 AEEY 176

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 7e-78
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Length = 196 Back     alignment and structure
 Score =  238 bits (608), Expect = 7e-78
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 10/205 (4%)

Query: 39  KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL 98
            H+L KELQLYFDKI  +      S +   A+  L  +SGL  LVPYF   ISE + +S 
Sbjct: 2   SHMLPKELQLYFDKILSMI----KSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSF 57

Query: 99  KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 158
           K   +L   + +  SL++N H+ I+PYLHQ++PS++TC++ K + +       D+R   A
Sbjct: 58  KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSA 111

Query: 159 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILP 218
           D++  I   +   Y+ L  RV +TL   ++DP +S    YGA+  L+ L  +VV+ +I  
Sbjct: 112 DIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIRE 171

Query: 219 NLELYLKFLEPEMLLEKQKNEMKRH 243
           + E Y + +  + +     N +  H
Sbjct: 172 HAEEYKRTIGKKKVTNLLDNVLNVH 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.9
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.67
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.58
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.51
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.44
1qgr_A876 Protein (importin beta subunit); transport recepto 97.26
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.15
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.13
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.88
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.38
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 95.98
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 95.97
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 95.94
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 95.92
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.77
2x1g_F 971 Cadmus; transport protein, developmental protein, 93.36
2x19_B 963 Importin-13; nuclear transport, protein transport; 92.55
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 92.38
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 92.0
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 91.93
2x19_B 963 Importin-13; nuclear transport, protein transport; 90.8
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 90.6
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 90.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 90.57
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 89.86
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 89.83
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 89.71
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 89.56
2x1g_F 971 Cadmus; transport protein, developmental protein, 89.55
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 89.52
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 88.98
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 88.82
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 88.47
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 87.92
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 87.84
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 87.81
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 87.72
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 87.48
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 87.06
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 86.58
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 86.26
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 85.29
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 84.83
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 83.51
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 83.38
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 81.79
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 81.48
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 81.01
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 80.87
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
Probab=100.00  E-value=1.4e-61  Score=450.69  Aligned_cols=183  Identities=37%  Similarity=0.632  Sum_probs=177.8

Q ss_pred             cccccHHHHHHHHHHHHHhcCCCchHHHHHHHHhhhhcCCccccchhhHHHhHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 015383           39 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP  118 (408)
Q Consensus        39 kHvLSkElQlYf~kIteall~~~d~~~r~~AL~sL~tD~GL~qLLPYfv~FIse~V~~nl~nl~~L~~LLrmv~ALL~Np  118 (408)
                      ||+||+|+|+||++||++|++    +.|++||++|++|||||||+|||++||+++|++|++|++.|.++|+|++||++||
T Consensus         2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~   77 (196)
T 4atg_A            2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK   77 (196)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999997    4689999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccchhhhHHHHHHHHhccccCCCCCCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhh
Q 015383          119 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY  198 (408)
Q Consensus       119 ~L~IepYLHqLlPsvLTCll~k~L~~~~~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~Y  198 (408)
                      +++||||+|||+|++|||+|++++|++      +|||+||++|+.||++|+++|++|++||+++|.|+|+||++|+++||
T Consensus        78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y  151 (196)
T 4atg_A           78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY  151 (196)
T ss_dssp             TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence            999999999999999999999999875      99999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCHHHHHHhhccchHHHHHHhhHhh
Q 015383          199 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEM  231 (408)
Q Consensus       199 GAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l  231 (408)
                      |||+||.+||++|||.+|+||++.|++.++..-
T Consensus       152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~  184 (196)
T 4atg_A          152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKKK  184 (196)
T ss_dssp             HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence            999999999999999999999999999887643
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.18
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 97.03
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.6
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.22
d1b3ua_588 Constant regulatory domain of protein phosphatase 95.82
d1b3ua_588 Constant regulatory domain of protein phosphatase 95.65
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.34
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.33
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.95
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 94.71
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 94.61
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 94.49
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 87.92
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 87.36
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 83.67
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0084  Score=53.79  Aligned_cols=103  Identities=12%  Similarity=0.047  Sum_probs=78.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcCCCCCcchhhhHHHHHHhhCHHHHHHhhccchHHHHHH
Q 015383          147 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF  226 (408)
Q Consensus       147 ~~~hw~LRd~AA~LL~~I~~kf~~sy~~L~pRI~~tL~k~llDp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~  226 (408)
                      .++.|.+|..|+.++..++..+++.   .-+.+...+.+.+.|+  ....+++|+.+|.++........+-|+++.+...
T Consensus       337 ~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~  411 (458)
T d1ibrb_         337 DDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT  411 (458)
T ss_dssp             CTTCCSHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhccHh---hhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            5788999999999999999999853   4567777887877654  4788999999999886544444567788888887


Q ss_pred             hhHhhhhHhhhhhhhHhHHHHHHHHHHHhhh
Q 015383          227 LEPEMLLEKQKNEMKRHEAWRVYGALQCAAG  257 (408)
Q Consensus       227 Le~~l~~~~~~~~~~r~ea~~V~gaLl~A~g  257 (408)
                      |-+.+.+   ++..+|..|-.+.|-+...++
T Consensus       412 l~~~l~d---~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         412 LIELMKD---PSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHGGGC---SCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHhCC---CCHHHHHHHHHHHHHHHHHhh
Confidence            7777754   456778888777776655443
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure