Citrus Sinensis ID: 015393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHcHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHccccccHHHccHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEHHcccHHHEEEccHcccHHHHHHHHHHHHcccHHHHHHHcEEEEEEcccccHHHHHHHHHHHcccHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHccccccccccccccHccccccccccccccccHHHHccccccccccccHHHHHHHHHHHcccccccccHHcccccccccccccHHHHHHHHcccEEEccHHHHHHHHHHHcccccccHHHHHHcccccccEEcccccccccccEEEEcc
Coil and Loop (DISEMBL)
mrtkrglcyprvvdvclgqrvvpvndkkrrgfssgepkttyrkkarfspdvagksdlfdalpdDLVVSILCklsstarcpsdFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQfngsggskndkdLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAAcqgistrswltwnplsqphpaphprnqnpnhnghvtgigcpllsdfgcnvpapeahpasRFLAEWFaarggtpgpglrlcshvgcgrpetrrhefrrcsvcgavnycSRACQALDWKLrhkadcapaerwldeegngdvdvdlndaegggednvvads
Flexible Loop (DISEMBL)
mrtkrglcyprvvdvclgqrvvpvndkkrrgfssgepkttyrkkarfspdvagKSDLFDALPDDLVVSILCKLsstarcpsDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAerwldeegngdvdvdlndaegggednvvads
Low Complexity Region (SEG)
MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS
Disordered region (IsUnstruct)
*****GLCYPRVVDVCLGQRVVPV******************************SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCL******************AQALYSLAVIQFNGS******KDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNP*******************HVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLD**************************
Disordered Region (DISOPRED)
***********************************************************ALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEE************************
Disordered Region (DISEMBL)
MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS
Disordered Region (DISPRO)
******************************************************SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDL****GGGEDNVVADS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9FYF9	379	F-box protein At1g67340 O	yes	no	0.813	0.875	0.745	1e-147
Q9FK27	336	F-box protein At5g50450 O	no	no	0.754	0.916	0.569	1e-106
Q9SB51	1008	Ubiquitin carboxyl-termin	no	no	0.127	0.051	0.442	1e-05

>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1

 Score =  521 bits (1341), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/354 (74%), Positives = 293/354 (82%), Gaps = 22/354 (6%)

Query: 55  SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIK 114
           +DL D++PDDLV+SILCKL ST+RCP+DF+NVL+TCKR+ GLA+N +VLS+ S K  A+K
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174
           A+NWSE +HRFLK C DAG++EACYTLGMIRFYCLQNRG+GASLMAKAAISSHA ALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFL 234
           AVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN++EGRRFL
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 235 VQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLS 294
           VQANARELAAVLSS    GI  RS  TW  LSQP P        PNH        CPLLS
Sbjct: 221 VQANARELAAVLSS----GIQARS--TWLSLSQPPPP-----VVPNHGQQT----CPLLS 265

Query: 295 DFGCNVPAPEAHPASRFLAEWFAARGGT-PGPGLRLCSHVGCGRPETRRHEFRRCSVCGA 353
           DFGCNVPAPE HPA+RFLA+WFA RGG  PG GLRLCSH GCGRPETR+HEFRRCSVCG 
Sbjct: 266 DFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGV 325

Query: 354 VNYCSRACQALDWKLRHKADCAPAERWLDE--EGNGDVDVDLNDAEGGGEDNVV 405
           VNYCSRACQALDWKLRHK DCAP +RWL+E   G G+V +D N    G  DNV+
Sbjct: 326 VNYCSRACQALDWKLRHKMDCAPVQRWLEEGDGGEGNVQIDGN----GNGDNVL 375

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 244/346 (70%), Gaps = 38/346 (10%)

Query: 58  FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANN 117
           F+ L DDL++SIL KL+++A  PSDF+ VL TCKR+N L L+ LVLSKA  +T A+ A  
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
           WS+S+H+FLKLC +AGN++A Y+LGMIRFYCLQN  SGASLMAKAAI SHA ALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 178 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
           QFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV ++++EGRR L+QA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 238 NARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFG 297
           NARELA           S RS+L+               ++ + N  +T +         
Sbjct: 202 NARELAC----------SLRSYLSL--------------KSGDENETLTDLSV------- 230

Query: 298 CNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYC 357
             VP  E HP +RFL EWF++       GLR+CSH GCGRPETR HEFRRCSVCG VNYC
Sbjct: 231 --VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYC 288

Query: 358 SRACQALDWKLRHKADCAPAERWLDEEGN-GD----VDVDLNDAEG 398
           SR CQALDW+ +HK +C P + W+      GD    V V+++D  G
Sbjct: 289 SRGCQALDWRAKHKVECTPLDLWVAAAAEIGDDGEAVAVEIDDNHG 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 28/52 (53%)

Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEG 398
           RCS C AV YCS  CQ + W+  HK +C PA    D E   D D+ L +  G
Sbjct: 84  RCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDSDLRLGEENG 135

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
255547716	394	conserved hypothetical protein [Ricinus	0.941	0.974	0.729	1e-164
225425418	385	PREDICTED: F-box protein At1g67340-like	0.894	0.948	0.777	1e-160
224053499	403	predicted protein [Populus trichocarpa]	0.906	0.918	0.736	1e-160
224075553	403	predicted protein [Populus trichocarpa]	0.909	0.920	0.731	1e-159
356512373	394	PREDICTED: F-box protein At1g67340-like	0.941	0.974	0.672	1e-154
356525160	391	PREDICTED: F-box protein At1g67340-like	0.933	0.974	0.686	1e-153
449435083	382	PREDICTED: F-box protein At1g67340-like	0.914	0.976	0.719	1e-149
356540140	350	PREDICTED: F-box protein At1g67340-like	0.840	0.98	0.725	1e-148
356566106	348	PREDICTED: F-box protein At1g67340-like	0.801	0.939	0.748	1e-148
297838467	375	zinc finger family protein [Arabidopsis	0.838	0.912	0.734	1e-146

>gi|255547716|ref|XP_002514915.1| conserved hypothetical protein [Ricinus communis] gi|223545966|gb|EEF47469.1| conserved hypothetical protein [Ricinus communis]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 305/418 (72%), Positives = 337/418 (80%), Gaps = 34/418 (8%)

Query: 1   MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGF--------SSGEPKTTYRKKARFSPD-V 51
           M+T+RGLCYPR   + L +R+V     KRR          ++GE +   RK+ R SP+ +
Sbjct: 1   MKTRRGLCYPRTDALDLDKRLV-----KRRKLGEIIAAATATGE-QMVCRKRQRLSPEKI 54

Query: 52  AG-KSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKT 110
           AG K+D F ALPDDLV  ILCKLSS+A CPSDFVNVL TCKR+NGL LNS+VLSKAS KT
Sbjct: 55  AGDKTDFFYALPDDLVTCILCKLSSSASCPSDFVNVLATCKRLNGLGLNSIVLSKASPKT 114

Query: 111 FAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQA 170
           FA+KA NWS+SAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA A
Sbjct: 115 FALKAKNWSDSAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAPA 174

Query: 171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEG 230
           LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEG
Sbjct: 175 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEG 234

Query: 231 RRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGC 290
           RRFLVQANARELAAVLS+     ++TR+W+ WNP           + + NH  H +G GC
Sbjct: 235 RRFLVQANARELAAVLSNPN-SDLNTRAWVNWNP-----------HAHSNHR-HASGPGC 281

Query: 291 PLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSV 350
           PLLSDFGCNVPAPEAHPASRF+A+WFA RGG+PG GLRLCSHVGCGRPETR+HEFRRCSV
Sbjct: 282 PLLSDFGCNVPAPEAHPASRFMADWFATRGGSPGQGLRLCSHVGCGRPETRKHEFRRCSV 341

Query: 351 CGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS 408
           CGAVNYCSRACQALDWKLRHK +CAP ERW+ E+G G          G G  NVV DS
Sbjct: 342 CGAVNYCSRACQALDWKLRHKEECAPVERWVVEDGEGG-----EAGVGDGNQNVVVDS 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425418|ref|XP_002271442.1| PREDICTED: F-box protein At1g67340-like [Vitis vinifera]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 300/386 (77%), Positives = 325/386 (84%), Gaps = 21/386 (5%)

Query: 1   MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDA 60
           MRT+RG+CY R VD+C   RVV     KRRG  SG+     RK+ R +P+ AGKSD F+A
Sbjct: 1   MRTRRGVCY-REVDMCTDNRVV-----KRRGDFSGDNVVCCRKRQRLAPESAGKSDFFEA 54

Query: 61  LPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSE 120
           LPDDLV+ IL KLSS+A CPSDF+NVL+TCKR NGL L+SLVLS+AS K+ A++A NWSE
Sbjct: 55  LPDDLVICILSKLSSSAGCPSDFINVLLTCKRFNGLGLHSLVLSRASSKSLAVRAKNWSE 114

Query: 121 SAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFN 180
           SA RFLKLCADAGNVEACYTLGMIRFYCLQNR SGASLMAKAAISSHA ALYSLAVIQFN
Sbjct: 115 SALRFLKLCADAGNVEACYTLGMIRFYCLQNRVSGASLMAKAAISSHAPALYSLAVIQFN 174

Query: 181 GSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240
           GS GSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN+AEGRRFLVQANAR
Sbjct: 175 GSVGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVAEGRRFLVQANAR 234

Query: 241 ELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNV 300
           ELAAVLSSA+   +S+RSWLTWNP                H+ HVTG GCPLLSDFGCNV
Sbjct: 235 ELAAVLSSAS-SAVSSRSWLTWNP--------------HQHHRHVTGSGCPLLSDFGCNV 279

Query: 301 PAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRA 360
           PAPEAHPASRFLAEWFAARGG PGPGLRLCSH GCGRPE RRHEFRRCSVCG VNYCSRA
Sbjct: 280 PAPEAHPASRFLAEWFAARGGVPGPGLRLCSHAGCGRPEMRRHEFRRCSVCGIVNYCSRA 339

Query: 361 CQALDWKLRHKADCAPAERWLDEEGN 386
           CQALDWKLRHKA CAP ERWL ++G+
Sbjct: 340 CQALDWKLRHKAACAPVERWLVDDGD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053499|ref|XP_002297844.1| predicted protein [Populus trichocarpa] gi|222845102|gb|EEE82649.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/387 (73%), Positives = 322/387 (83%), Gaps = 17/387 (4%)

Query: 1   MRTKRGLCYPR---VVDVC---LGQRVVPVN-DKKRRGFSSGEPKTTYRKKARFSPDVAG 53
           MRT+RG+ YPR    V+ C     +R      ++ +  F++GE     ++    S    G
Sbjct: 1   MRTRRGISYPRRGVAVNACNTAAEKRTSSTTYNRGKPDFTAGEYMVCRKRNRLVSTGKKG 60

Query: 54  KSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAI 113
           ++DLF++LPDDLV+SILCKLSS+A CPSDF+NVLITC+R+NGL L+SLVLSKAS K+FAI
Sbjct: 61  ETDLFESLPDDLVISILCKLSSSASCPSDFINVLITCRRLNGLGLHSLVLSKASPKSFAI 120

Query: 114 KANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYS 173
           KANNWS+SAHRFLKLCADAGN EACYTLGMIRFYCLQNRGSGASLMAKAAISSHA ALYS
Sbjct: 121 KANNWSDSAHRFLKLCADAGNAEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAPALYS 180

Query: 174 LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRF 233
           LAVIQFNGSGGSK+DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN+ EGRRF
Sbjct: 181 LAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVTEGRRF 240

Query: 234 LVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLL 293
           LVQANARELAAVLS+    G+ TR+WLTWNP +      HP +++P+ NG     GCPLL
Sbjct: 241 LVQANARELAAVLSNPD-SGLPTRAWLTWNPHA------HPNHRHPSENGPS---GCPLL 290

Query: 294 SDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGA 353
           SDFGCNVPAPEAHPASRF+ EWFA RGG+ G GLRLCSH GCGRPETR+HEFRRCSVCGA
Sbjct: 291 SDFGCNVPAPEAHPASRFMTEWFAIRGGSAGSGLRLCSHTGCGRPETRKHEFRRCSVCGA 350

Query: 354 VNYCSRACQALDWKLRHKADCAPAERW 380
           VNYCSRACQALDWKLRHK +CAP ERW
Sbjct: 351 VNYCSRACQALDWKLRHKEECAPVERW 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075553|ref|XP_002304680.1| predicted protein [Populus trichocarpa] gi|222842112|gb|EEE79659.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/387 (73%), Positives = 316/387 (81%), Gaps = 16/387 (4%)

Query: 1   MRTKRGLCYPR-----VVDVCLGQRVVPVNDKKRR-GFSSGEPKTTYRKKARFSPDVAGK 54
           MRT+RGL YPR       D   G+R    + K+ R  F++G+     +K    S    G+
Sbjct: 1   MRTRRGLSYPRGAAVNACDTAAGKRTATTSYKRERPDFAAGDYLVCRKKNRLISTQKTGE 60

Query: 55  SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIK 114
           +DLFD+LPDDLV+SILCKLSS+A CPSDF+NVL+TCKR+NGL L+SLVLSKAS KTFA+K
Sbjct: 61  TDLFDSLPDDLVISILCKLSSSASCPSDFINVLLTCKRLNGLGLHSLVLSKASPKTFAVK 120

Query: 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174
           A NWS+SAHRFLKL ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS+A ALYSL
Sbjct: 121 AKNWSDSAHRFLKLFADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSYAPALYSL 180

Query: 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFL 234
           AVIQFNGSGGSK+DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN+ EGRRFL
Sbjct: 181 AVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNVTEGRRFL 240

Query: 235 VQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLS 294
           VQANARELAAVLS     G  TR+W +WNP +      HP +++P  NG     GCPLLS
Sbjct: 241 VQANARELAAVLSKHN-SGFPTRTWFSWNPHA------HPNHRHPTGNGPS---GCPLLS 290

Query: 295 DFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAV 354
           DFGCNVPAPE+HPASRF+ EWFA RGG+ G GLRLCSH GCGR ETR+HEFRRCSVCGAV
Sbjct: 291 DFGCNVPAPESHPASRFMTEWFAIRGGSSGSGLRLCSHTGCGRSETRKHEFRRCSVCGAV 350

Query: 355 NYCSRACQALDWKLRHKADCAPAERWL 381
           NYCSRACQALDWKLRHK  CAP ERW+
Sbjct: 351 NYCSRACQALDWKLRHKEGCAPVERWV 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512373|ref|XP_003524894.1| PREDICTED: F-box protein At1g67340-like [Glycine max]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/418 (67%), Positives = 323/418 (77%), Gaps = 34/418 (8%)

Query: 1   MRTKRGLCYPRVVD-VCLGQRVVPVNDK-------KRRGFSSGEPKTTYRKKARFSPDVA 52
           MRT+RG CY  VV  +C   RV    +K             +G+     RK+ + +P+  
Sbjct: 1   MRTRRGACYSGVVSRMCSDARVSKKKNKDLHMHMHMHMHVPAGDSIIYSRKRQKKTPEKT 60

Query: 53  GKSD--LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKT 110
             +D   F++LPDDLV+SI CKLSSTA  PSDFVN+LITCKR+N LAL+SLVLSKAS KT
Sbjct: 61  AGADYEFFESLPDDLVISIFCKLSSTATKPSDFVNILITCKRLNRLALHSLVLSKASPKT 120

Query: 111 FAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQA 170
           F IKA +W +SAH+FLK CADAGNVEACYTLGMIRFYCLQNRGSGAS MAKAAI+SHA+A
Sbjct: 121 FTIKARDWCDSAHKFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASFMAKAAINSHARA 180

Query: 171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEG 230
           LY+LAVIQFNGSGG+K+DKDLRAGVALCARAAFLGH+DA+RELGHCLQDGYGVRQNIAEG
Sbjct: 181 LYALAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDAMRELGHCLQDGYGVRQNIAEG 240

Query: 231 RRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGC 290
           RRFLVQANARELAAVLS+    G + R+WL+WN   QP                  G GC
Sbjct: 241 RRFLVQANARELAAVLST----GAAARTWLSWNL--QPQQLRQ-------------GSGC 281

Query: 291 PLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSV 350
           PLLSDFGCNVPAPE HPAS F+AEWFAARGG+PGPGLRLCSH GCGRPETR+HEFRRCSV
Sbjct: 282 PLLSDFGCNVPAPEVHPASLFMAEWFAARGGSPGPGLRLCSHAGCGRPETRKHEFRRCSV 341

Query: 351 CGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVADS 408
           CG VNYCSRACQALDWK RHKA+C+P +RWL+E+G      D+ + +G GE  V+ DS
Sbjct: 342 CGVVNYCSRACQALDWKFRHKAECSPVQRWLEEDGE-----DVGNDDGDGEVEVMVDS 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525160|ref|XP_003531195.1| PREDICTED: F-box protein At1g67340-like [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/411 (68%), Positives = 319/411 (77%), Gaps = 30/411 (7%)

Query: 1   MRTKRGLCYPRVVD-VCLGQRVVPVNDKK---RRGFSSGEPKTTYRKKARFSPD--VAGK 54
           MRT+RG CYP VV  +C   RV     K         +G+     RKK + +P+   AG+
Sbjct: 1   MRTRRGACYPGVVSRMCSNVRVTKKKSKDLHMHMHVPAGDSIIYSRKKQKKTPEKLAAGR 60

Query: 55  SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIK 114
            D F++LPDDLV+SI CKLSSTA  PSDFVNVLIT KR+N LAL+SLVLSKAS +TF IK
Sbjct: 61  YDFFESLPDDLVISIFCKLSSTATKPSDFVNVLITSKRLNRLALHSLVLSKASPRTFTIK 120

Query: 115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSL 174
           A  W +SAH+FLK CADAGN+EACYTLGMIRFYCLQNRGSGASLMAKAAI+SHA+ALY+L
Sbjct: 121 AKYWCDSAHKFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYAL 180

Query: 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFL 234
           AVIQFNGSGG+K+DKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGVRQNIAEGRRFL
Sbjct: 181 AVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFL 240

Query: 235 VQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLS 294
           VQANARELAAVLS+    G + R+ L+WN   QP                  G GCPLLS
Sbjct: 241 VQANARELAAVLST----GAAARTLLSWN--LQPQQLRQ-------------GSGCPLLS 281

Query: 295 DFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAV 354
           DFGCNVPAP+ HPAS F+ EWFAA GG+PGPGLRLCS+ GCGRPETR+HEFRRCSVCG V
Sbjct: 282 DFGCNVPAPDVHPASLFMTEWFAAHGGSPGPGLRLCSNAGCGRPETRKHEFRRCSVCGEV 341

Query: 355 NYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVV 405
           NYCSRACQALDWK RHKA+CAP ERWLDE+G      D+ + +G GE  VV
Sbjct: 342 NYCSRACQALDWKFRHKAECAPVERWLDEDGE-----DVGNDDGDGEVEVV 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435083|ref|XP_004135325.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus] gi|449494931|ref|XP_004159686.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/392 (71%), Positives = 310/392 (79%), Gaps = 19/392 (4%)

Query: 1   MRTKRGLCYPRVVDVCLGQRVVPVNDKKRRGFSSGEPKTTYRKKARFSPDVAGKSDLFDA 60
           MRT+ GL YP +            N K++   ++  P    R K  +       SDLFD+
Sbjct: 1   MRTRTGLSYPPLQPTAFASG----NRKRKHHVAADRPFCRKRNKLSYHIKTP-TSDLFDS 55

Query: 61  LPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSE 120
           LPDDLV++IL  LSS A  PSDF+N+L+TCKR+N L LN +VLS+AS+KTFAI+A NW+E
Sbjct: 56  LPDDLVITILSNLSSAASSPSDFINILLTCKRLNNLGLNPMVLSRASQKTFAIRAKNWTE 115

Query: 121 SAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFN 180
           SAHRFLK C+DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAI SHA ALYSLAVIQFN
Sbjct: 116 SAHRFLKQCSDAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFN 175

Query: 181 GSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR 240
           GSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNI EGRRFLVQANAR
Sbjct: 176 GSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANAR 235

Query: 241 ELAAVLSSAACQGISTRSW-LTWNPLSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCN 299
           ELAAVLSS A   ++     LTW             N  P H+ HVTG GCPLLSDFGCN
Sbjct: 236 ELAAVLSSEAASSVAASRSCLTW-------------NTQPPHHRHVTGSGCPLLSDFGCN 282

Query: 300 VPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSR 359
           +PAPEAHPAS+FLAEWF ARGG+PG GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSR
Sbjct: 283 IPAPEAHPASQFLAEWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSR 342

Query: 360 ACQALDWKLRHKADCAPAERWLDEEGNGDVDV 391
           ACQALDWKLRHK DCAP ERWLD+ G+G  DV
Sbjct: 343 ACQALDWKLRHKIDCAPVERWLDDNGDGMDDV 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540140|ref|XP_003538548.1| PREDICTED: F-box protein At1g67340-like [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/364 (72%), Positives = 299/364 (82%), Gaps = 21/364 (5%)

Query: 42  RKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSL 101
           RK+ + SPD    SD FD+LPDDLV+SILCKLSSTA  PSDF++VLITCKR+N L L+SL
Sbjct: 4   RKRQKTSPD--KTSDCFDSLPDDLVLSILCKLSSTATSPSDFISVLITCKRLNSLGLHSL 61

Query: 102 VLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK 161
           VLSKAS KTF++KA NW +S HRFLK CADAGN+EACYTLG+IRFYCLQNRGSGA+LMAK
Sbjct: 62  VLSKASHKTFSVKAKNWCDSLHRFLKHCADAGNIEACYTLGLIRFYCLQNRGSGAALMAK 121

Query: 162 AAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY 221
           AA++SHA ALYSLAVIQFNGSGG+KNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY
Sbjct: 122 AAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY 181

Query: 222 GVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNH 281
           GV+QN+ EGRRFLVQAN RELAAVLS+    G + R WLTW+      P PHPR ++   
Sbjct: 182 GVKQNVTEGRRFLVQANVRELAAVLSA----GNNKRPWLTWS----HQPVPHPRLRSE-- 231

Query: 282 NGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETR 341
               TG GCPLLSD+GCNVPAPE HPAS+F++EWF  RGG P  G+RLCS  GCGRPETR
Sbjct: 232 ----TGSGCPLLSDYGCNVPAPEVHPASQFMSEWFDIRGGFPSAGMRLCSQSGCGRPETR 287

Query: 342 RHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGE 401
           RHEFRRCSVCG VNYCSRACQALDWK RHKA+CAP ERWLD++     D D+     GG+
Sbjct: 288 RHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLDDD-----DEDVAGENDGGD 342

Query: 402 DNVV 405
           D V+
Sbjct: 343 DGVM 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566106|ref|XP_003551276.1| PREDICTED: F-box protein At1g67340-like [Glycine max]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/346 (74%), Positives = 291/346 (84%), Gaps = 19/346 (5%)

Query: 42  RKKARFSPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSL 101
           RK+ + SPD     D FD+LPDDLV+SILCKLSSTA  PSDF++VLITCKR+N L L+SL
Sbjct: 4   RKRQKTSPDKT-SDDFFDSLPDDLVLSILCKLSSTATSPSDFISVLITCKRLNSLGLHSL 62

Query: 102 VLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK 161
           VLSKAS KTF++KA NW +S HRFLK CADAGN+EACYTLGMIRFYCLQNRGSGASLMAK
Sbjct: 63  VLSKASHKTFSVKAKNWCDSLHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAK 122

Query: 162 AAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY 221
           AA++SHA ALYSLAVIQFNGSGG+KNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY
Sbjct: 123 AAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY 182

Query: 222 GVRQNIAEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNH 281
           GV+ N+ EGRRFLVQANARELAAVLS+    G + R WLTW+     HP  HPR ++   
Sbjct: 183 GVKLNVTEGRRFLVQANARELAAVLSA----GNTKRPWLTWS----HHPVTHPRLRS--- 231

Query: 282 NGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETR 341
                  GCPL+SD+GCNVPAP+AHPAS+F++EWF  RGG PGP +RLCSH GCGRPETR
Sbjct: 232 -------GCPLMSDYGCNVPAPDAHPASQFMSEWFDIRGGFPGPDMRLCSHSGCGRPETR 284

Query: 342 RHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNG 387
           RHEFRRCSVCG VNYCSRACQALDWK RHKA+CA  ERWLD++G G
Sbjct: 285 RHEFRRCSVCGLVNYCSRACQALDWKFRHKAECATVERWLDDDGEG 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838467|ref|XP_002887115.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297332956|gb|EFH63374.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/362 (73%), Positives = 297/362 (82%), Gaps = 20/362 (5%)

Query: 48  SPDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKAS 107
           +P+    +DL D++PDDLVVSILCKL ST+RCP+DF+NVL+TCKR+ GLA+N LVLS+ S
Sbjct: 33  APEHTTGADLLDSIPDDLVVSILCKLGSTSRCPADFINVLMTCKRLKGLAMNPLVLSRLS 92

Query: 108 KKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH 167
            K  A+KA+NWSE +HRFLK C DAG++EACYTLGMIRFYCLQNRG+GASLMAKAAISSH
Sbjct: 93  PKAIAVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSH 152

Query: 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNI 227
           A ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN+
Sbjct: 153 APALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNV 212

Query: 228 AEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTG 287
           +EGRRFLVQANARELAAVLSS    GI  RS  TW  LSQ  P        PNH     G
Sbjct: 213 SEGRRFLVQANARELAAVLSS----GIQARS--TWLSLSQTPPV-------PNH-----G 254

Query: 288 IGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGT-PGPGLRLCSHVGCGRPETRRHEFR 346
             CPLLSDFGCNVPAPE HPA+RFLA+WFA RGG  PG GLRLCSH GCGRPETR+HEFR
Sbjct: 255 QSCPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFR 314

Query: 347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVVA 406
           RCSVCG VNYCSRACQALDWKLRHK DCAP ERWL+E   G+ +V + D  G GE+ ++ 
Sbjct: 315 RCSVCGVVNYCSRACQALDWKLRHKMDCAPVERWLEEGDGGEGNVQI-DGNGNGENVLLQ 373

Query: 407 DS 408
            S
Sbjct: 374 MS 375

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2019604	379	AT1G67340 "AT1G67340" [Arabido	0.833	0.897	0.745	2.6e-141
TAIR|locus:2177522	336	AT5G50450 [Arabidopsis thalian	0.617	0.75	0.585	1.3e-70
ASPGD|ASPL0000075121	807	AN8765 [Emericella nidulans (t	0.563	0.285	0.288	3.3e-05
UNIPROTKB|G4NGF6	1240	MGG_04327 "Uncharacterized pro	0.107	0.035	0.5	5.5e-05
TAIR|locus:2121959	1008	UBP16 "ubiquitin-specific prot	0.127	0.051	0.442	0.00032
UNIPROTKB|Q8E8U7	484	SO_4559 "Sel1 domain-containin	0.323	0.272	0.312	0.00043
TIGR_CMR|SO_4559	484	SO_4559 "conserved domain prot	0.323	0.272	0.312	0.00043
UNIPROTKB|Q74B01	213	GSU2395 "Uncharacterized prote	0.372	0.713	0.257	0.00061
TIGR_CMR|GSU_2395	213	GSU_2395 "conserved hypothetic	0.372	0.713	0.257	0.00061

TAIR|locus:2019604 AT1G67340 "AT1G67340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
 Identities = 267/358 (74%), Positives = 298/358 (83%)

Query:    49 PDVAGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASK 108
             P+    +DL D++PDDLV+SILCKL ST+RCP+DF+NVL+TCKR+ GLA+N +VLS+ S 
Sbjct:    35 PENTTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSP 94

Query:   109 KTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA 168
             K  A+KA+NWSE +HRFLK C DAG++EACYTLGMIRFYCLQNRG+GASLMAKAAISSHA
Sbjct:    95 KAIAVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHA 154

Query:   169 QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIA 228
              ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDGYGV QN++
Sbjct:   155 PALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVS 214

Query:   229 EGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQNPNHNGHVTGI 288
             EGRRFLVQANARELAAVLSS    GI  RS  TW  LSQP P P      PNH G  T  
Sbjct:   215 EGRRFLVQANARELAAVLSS----GIQARS--TWLSLSQP-PPPVV----PNH-GQQT-- 260

Query:   289 GCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGT-PGPGLRLCSHVGCGRPETRRHEFRR 347
              CPLLSDFGCNVPAPE HPA+RFLA+WFA RGG  PG GLRLCSH GCGRPETR+HEFRR
Sbjct:   261 -CPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRR 319

Query:   348 CSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEGGGEDNVV 405
             CSVCG VNYCSRACQALDWKLRHK DCAP +RWL+E   G+ +V + D  G G DNV+
Sbjct:   320 CSVCGVVNYCSRACQALDWKLRHKMDCAPVQRWLEEGDGGEGNVQI-DGNGNG-DNVL 375

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2177522 AT5G50450 [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 151/258 (58%), Positives = 188/258 (72%)

Query:    58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANN 117
             F+ L DDL++SIL KL+++A  PSDF+ VL TCKR+N L L+ LVLSKA  +T A+ A  
Sbjct:    22 FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query:   118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
             WS+S+H+FLKLC +AGN++A Y+LGMIRFYCLQN  SGASLMAKAAI SHA ALYSL+VI
Sbjct:    82 WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query:   178 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
             QFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV ++++EGRR L+QA
Sbjct:   142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query:   238 NARELAAVLSS--AACQGIS--TRSWLTWNPLSQPHPAPHPRNQNPNHNGHVT-GIGCPL 292
             NARELA  L S  +   G    T + L+  P+ + HP      +  + +G V    G  +
Sbjct:   202 NARELACSLRSYLSLKSGDENETLTDLSVVPVQEIHPVNRFLKEWFS-SGRVDLAEGLRM 260

Query:   293 LSDFGCNVPAPEAHPASR 310
              S  GC  P   AH   R
Sbjct:   261 CSHGGCGRPETRAHEFRR 278

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000075121 AN8765 [Emericella nidulans (taxid:162425)]

 Score = 132 (51.5 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 73/253 (28%), Positives = 107/253 (42%)

Query:     6 GLCYPRVVDVCLGQRVVPVNDKKRR-GFSSGEPKTTYRK---KARFSPDVAGKSDLFD-- 59
             G   P V+D       +P +    R G  SG P    R+        P  A      +  
Sbjct:   365 GYVEPEVLDPQQNPDALPHHPMPYRPGHDSGGPPPPVRQYNGAMNSQPQSAPPQGAPEGP 424

Query:    60 ALPDDLVVSILCKLSSTARC-PSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNW 118
             A P+ +  + L +L   AR  PSD    L   +++   ++  +  S+   K+ A     +
Sbjct:   425 APPEPVTHAELERLQQQARGNPSDHKLQLTLAQKLVEASIVLVEASRLDPKSKAKAREKY 484

Query:   119 SESAHRFLKLCADAGNVEA------CYTLGMIRFYCLQNRGSGA-SLMAKAAISSHAQAL 171
             +  AH+ +K    AG  +A      CY  G++    LQN    A SL   AA  +HAQA 
Sbjct:   485 NIDAHKIVKKLVSAGYPDAQFYMADCYGQGLLG---LQNDAKEAFSLYHSAAKQNHAQAA 541

Query:   172 YSLAV---IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY-GVRQNI 227
             Y +AV   I     GG+K D   +A V    RAA LG   A+ ++G  L  G  G  +N 
Sbjct:   542 YRVAVCCEIGHEEGGGTKRDP-FKA-VQWYKRAASLGDPPAMYKMGMILLKGLLGQARNP 599

Query:   228 AEGRRFLVQANAR 240
              EG  +L +A  R
Sbjct:   600 REGISWLKRAAER 612

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4NGF6 MGG_04327 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 132 (51.5 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/44 (50%), Positives = 26/44 (59%)

Query:   335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378
             CGRPE  + +  RC  C  V YCS  CQ  DWK RHK +C  A+
Sbjct:  1196 CGRPEGPQQKLNRCKACLEVKYCSVDCQRADWKTRHKRECQTAQ 1239

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 23/52 (44%), Positives = 28/52 (53%)

Query:   347 RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLDEEGNGDVDVDLNDAEG 398
             RCS C AV YCS  CQ + W+  HK +C PA    D E   D D+ L +  G
Sbjct:    84 RCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDSDLRLGEENG 135

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IGI

GO:0009908 "flower development" evidence=IGI

GO:0048364 "root development" evidence=IGI

GO:0048366 "leaf development" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB|Q8E8U7 SO_4559 "Sel1 domain-containing protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 44/141 (31%), Positives = 66/141 (46%)

Query:   122 AHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNG 181
             A  FL+L A+    EA   LG++ +Y  Q+       ++KAA + +  A Y LA++  NG
Sbjct:   287 AKHFLQLAAEGEQTEAMANLGVL-YYQTQDLPQAYHFISKAAQAGYPHAQYHLALMLANG 345

Query:   182 SGGSKNDKDLRAGVALCARAAFLGHIDA-LRELGHCLQDGYGVRQNIAEGRRFL--VQAN 238
              G  +   D  A     A AA  G +DA L    H L D  G+  ++++  R+L  V   
Sbjct:   346 DGCQR---DPIASEYWMAEAAEQGQLDAMLTRAQHMLNDESGLGGDVSQAERYLREVIKY 402

Query:   239 ARELAAV--LSSAACQGISTR 257
                + A+  LS A   GI  R
Sbjct:   403 GHSVPAMIELSMALADGILGR 423

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4559 SO_4559 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 44/141 (31%), Positives = 66/141 (46%)

Query:   122 AHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNG 181
             A  FL+L A+    EA   LG++ +Y  Q+       ++KAA + +  A Y LA++  NG
Sbjct:   287 AKHFLQLAAEGEQTEAMANLGVL-YYQTQDLPQAYHFISKAAQAGYPHAQYHLALMLANG 345

Query:   182 SGGSKNDKDLRAGVALCARAAFLGHIDA-LRELGHCLQDGYGVRQNIAEGRRFL--VQAN 238
              G  +   D  A     A AA  G +DA L    H L D  G+  ++++  R+L  V   
Sbjct:   346 DGCQR---DPIASEYWMAEAAEQGQLDAMLTRAQHMLNDESGLGGDVSQAERYLREVIKY 402

Query:   239 ARELAAV--LSSAACQGISTR 257
                + A+  LS A   GI  R
Sbjct:   403 GHSVPAMIELSMALADGILGR 423

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q74B01 GSU2395 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
 Identities = 41/159 (25%), Positives = 69/159 (43%)

Query:    84 VNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGM 143
             + +++ C     + +N       S+     K  N+ ++A   L+     GN++A   LG 
Sbjct:     5 ITLILFCILAQNVTMNYCFADVLSEAYTYFKNKNY-DNALPLLENLVTEGNLDAYNLLGT 63

Query:   144 I--RFYCL-QNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCAR 200
             +  + Y + QN      L   AA   HA A Y+L ++  +GSG  +   D    +     
Sbjct:    64 MYKKGYSVPQNPNKAIELYEFAAKKGHAGAQYNLGLMYESGSGILQ---DYSQAIKWYKL 120

Query:   201 AAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239
             AA      AL  LGH   +G GV++N+ E   +  +A A
Sbjct:   121 AAIQNDSGALNNLGHIYHNGLGVKKNMKEACNYYGKAAA 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2395 GSU_2395 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 111 (44.1 bits), Expect = 0.00061, P = 0.00061
 Identities = 41/159 (25%), Positives = 69/159 (43%)

Query:    84 VNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGM 143
             + +++ C     + +N       S+     K  N+ ++A   L+     GN++A   LG 
Sbjct:     5 ITLILFCILAQNVTMNYCFADVLSEAYTYFKNKNY-DNALPLLENLVTEGNLDAYNLLGT 63

Query:   144 I--RFYCL-QNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCAR 200
             +  + Y + QN      L   AA   HA A Y+L ++  +GSG  +   D    +     
Sbjct:    64 MYKKGYSVPQNPNKAIELYEFAAKKGHAGAQYNLGLMYESGSGILQ---DYSQAIKWYKL 120

Query:   201 AAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA 239
             AA      AL  LGH   +G GV++N+ E   +  +A A
Sbjct:   121 AAIQNDSGALNNLGHIYHNGLGVKKNMKEACNYYGKAAA 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       408   0.00079  118 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  291 KB (2150 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.05u 0.14s 33.19t   Elapsed:  00:00:01
  Total cpu time:  33.05u 0.14s 33.19t   Elapsed:  00:00:01
  Start:  Mon May 20 15:11:08 2013   End:  Mon May 20 15:11:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYF9	FB76_ARATH	No assigned EC number	0.7457	0.8137	0.8759	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008009901 hypothetical protein (403 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	7e-11
pfam01753	39	pfam01753, zf-MYND, MYND finger	9e-08
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	7e-05
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	3e-04
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	0.003

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 62.4 bits (151), Expect = 7e-11
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 114 KANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQA 170
            + + +++A  + +  A  G  EA + LG++         +         KAA   + +A
Sbjct: 89  VSRDKTKAAD-WYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147

Query: 171 ---LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNI 227
              +Y L +   +G        D +  + L  +AA LG+ DA   LG   + G GV +++
Sbjct: 148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207

Query: 228 AEGRRFLVQANARELAA 244
            +  R+  +A  +   A
Sbjct: 208 KKAFRWYKKAAEQGDGA 224

Length = 292

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
           CG+   +     RCS C +V YCS+ CQ  DW   HK +C
Sbjct: 4   CGKEALK---LLRCSRCKSVYYCSKECQKADWP-YHKKEC 39

Length = 39

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 144 IRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF 203
                  +         KAA    A AL  L  +   G G S++             AA 
Sbjct: 49  AGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKT---KAADWYRCAAA 105

Query: 204 LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
            G  +AL  LG    +G GV  ++ +  ++  +A
Sbjct: 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 120 ESAHRFLKLCADAGNVEA---CYTLGMIRFY------CLQNRGSGASLMAKAAISSHAQA 170
             A ++ +  A  GNVEA    Y LG+             +      L  KAA   +  A
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDA 189

Query: 171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQ 225
              L  +   G G     +DL+       +AA  G   A   LG    +G GV++
Sbjct: 190 QLLLGRMYEKGLGV---PRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKK 241

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 119 SESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLA 175
            + A    +  A+ GN +A   LG +        ++         KAA      A Y+L 
Sbjct: 171 DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG 230

Query: 176 VIQFNGSGGSKND-------KDLRAGVALCARAAFLGHIDALREL 213
           ++  NG G  K         +D +  +    +A  LG  +A   L
Sbjct: 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEAL 275

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.84
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.75
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.73
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.62
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.46
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.43
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.71
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	98.48
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	98.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.33
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	98.32
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	98.26
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.23
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.16
PRK15359	144	type III secretion system chaperone protein SscB;	98.07
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.07
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.84
PRK12370	553	invasion protein regulator; Provisional	97.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.69
KOG2003	840	consensus TPR repeat-containing protein [General f	97.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.67
PRK11189	296	lipoprotein NlpI; Provisional	97.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.57
PRK15359	144	type III secretion system chaperone protein SscB;	97.56
PRK12370	553	invasion protein regulator; Provisional	97.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.52
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.48
PRK11189	296	lipoprotein NlpI; Provisional	97.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.33
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.23
KOG2003	840	consensus TPR repeat-containing protein [General f	97.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.18
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.18
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.17
KOG1126	638	consensus DNA-binding cell division cycle control	97.16
PF12688	120	TPR_5: Tetratrico peptide repeat	97.03
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.97
KOG1125	579	consensus TPR repeat-containing protein [General f	96.97
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.89
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.59
PRK10803	263	tol-pal system protein YbgF; Provisional	96.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.54
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.46
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.41
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.37
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.36
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.32
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.27
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.23
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.21
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.14
PRK11906	458	transcriptional regulator; Provisional	96.08
KOG1126	638	consensus DNA-binding cell division cycle control	96.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.01
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.75
KOG1129	478	consensus TPR repeat-containing protein [General f	95.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.25
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.13
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	95.01
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.01
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.98
PRK10803	263	tol-pal system protein YbgF; Provisional	94.97
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.91
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	94.64
PRK14574	822	hmsH outer membrane protein; Provisional	94.64
PRK14574	822	hmsH outer membrane protein; Provisional	94.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.47
PF12688	120	TPR_5: Tetratrico peptide repeat	94.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	94.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.42
PRK11906	458	transcriptional regulator; Provisional	94.37
PF13428	44	TPR_14: Tetratricopeptide repeat	94.1
PRK15331	165	chaperone protein SicA; Provisional	94.02
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.98
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.97
KOG2076	895	consensus RNA polymerase III transcription factor	93.86
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.7
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	93.59
KOG3612	588	consensus PHD Zn-finger protein [General function	93.56
KOG2061	362	consensus Uncharacterized MYND Zn-finger protein [	93.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.44
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	93.3
KOG1129	478	consensus TPR repeat-containing protein [General f	93.27
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	93.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	93.02
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	92.98
PF13371	73	TPR_9: Tetratricopeptide repeat	92.88
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.81
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.8
KOG2076	895	consensus RNA polymerase III transcription factor	92.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	92.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	92.65
PRK15331	165	chaperone protein SicA; Provisional	92.63
KOG1586	288	consensus Protein required for fusion of vesicles	92.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.55
PF13428	44	TPR_14: Tetratricopeptide repeat	92.51
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	91.66
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	91.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	91.49
KOG4555	175	consensus TPR repeat-containing protein [Function	91.46
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.43
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.26
PLN02789	320	farnesyltranstransferase	90.97
PLN02789	320	farnesyltranstransferase	90.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.26
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	89.81
KOG4555	175	consensus TPR repeat-containing protein [Function	89.52
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	89.31
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.29
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.28
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.23
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	89.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	88.83
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	88.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	88.09
PLN03218	1060	maturation of RBCL 1; Provisional	87.99
PF13431	34	TPR_17: Tetratricopeptide repeat	87.88
KOG1125	579	consensus TPR repeat-containing protein [General f	87.57
PLN03158	396	methionine aminopeptidase; Provisional	87.26
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	86.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	86.37
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	86.25
PLN03218	1060	maturation of RBCL 1; Provisional	86.03
KOG0553	304	consensus TPR repeat-containing protein [General f	85.71
PF13371	73	TPR_9: Tetratricopeptide repeat	84.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.62
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	84.34
PF13431	34	TPR_17: Tetratricopeptide repeat	84.19
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	84.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	83.81
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.71
KOG0553	304	consensus TPR repeat-containing protein [General f	83.62
KOG1128	777	consensus Uncharacterized conserved protein, conta	83.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.51
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.53
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.03
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	80.16

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.84  E-value=7.9e-20  Score=177.87  Aligned_cols=131  Identities=23%  Similarity=0.276  Sum_probs=121.6

Q ss_pred             hcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHH---HHHHHHHHHcC---CCCC
Q 015393          115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQA---LYSLAVIQFNG---SGGS  185 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A---~~~Lg~~y~~G---~Gv~  185 (408)
                      ...+..+|+.||+.+++.|++.++++||.+|..   +.+|..+|+.||++||++|+++|   ++.||.+|..|   .++.
T Consensus        89 v~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          89 VSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            344578999999999999999999999999994   56899999999999999999999   99999999999   7876


Q ss_pred             CCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393          186 KNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS  248 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~  248 (408)
                      .   +..+|+.||.+|+++|++.|++.||.+|..|.||++|.++|++||.+|+++|+..+...
T Consensus       169 ~---~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~  228 (292)
T COG0790         169 Y---DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYN  228 (292)
T ss_pred             H---HHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6   88899999999999999999999999999999999999999999999999999665554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.75  E-value=5.8e-17  Score=157.73  Aligned_cols=131  Identities=24%  Similarity=0.236  Sum_probs=121.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHH---HHHhHHHHhhc------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCC
Q 015393          116 NNWSESAHRFLKLCADAGNVEA---CYTLGMIRFYC------LQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A---~~~LG~~y~~~------~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ..+..+|..||++||++|++.|   ++.||.+|..+      ..+..+|+.||.+|++.|++.|+++||.+|..|.||++
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~  205 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPR  205 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCc
Confidence            4468899999999999999999   99999999843      24556999999999999999999999999999999888


Q ss_pred             CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccc----------cHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          187 NDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQ----------NIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~----------d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                         |+.+|+.||.+||++|+..+++.++.+|.+|.|+++          |..+|..||.++..+|...+....
T Consensus       206 ---d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  275 (292)
T COG0790         206 ---DLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEAL  275 (292)
T ss_pred             ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHH
Confidence               999999999999999999999999999999999886          999999999999999999987764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=7e-17  Score=170.81  Aligned_cols=131  Identities=27%  Similarity=0.324  Sum_probs=120.6

Q ss_pred             hhcCCHHHHHHHHHHHHH-------cCCHHHHHHhHHHHhh---ccC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Q 015393          114 KANNWSESAHRFLKLCAD-------AGNVEACYTLGMIRFY---CLQ-NRGSGASLMAKAAISSHAQALYSLAVIQFNGS  182 (408)
Q Consensus       114 ~~~~~~~~A~~~l~~aAe-------~G~~~A~~~LG~~y~~---~~~-d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~  182 (408)
                      +...+.++|+.||+.+++       +|++.|++.||.+|..   +.. |..+|+.||.+||+.|++.|+|.||.+|+.|.
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT  339 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC
Confidence            345678999999999999       9999999999999994   456 99999999999999999999999999999988


Q ss_pred             CCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393          183 GGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS  248 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~  248 (408)
                       ..+   |+.+|++||..||..|++.|+++|+.||+.|.||++|.++|+.||++||+.|++.|...
T Consensus       340 -~~~---d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~  401 (552)
T KOG1550|consen  340 -KER---DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL  401 (552)
T ss_pred             -ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH
Confidence             334   99999999999999999999999999999999999999999999999999999876544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.62  E-value=3e-15  Score=158.46  Aligned_cols=128  Identities=23%  Similarity=0.268  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhHHHHhh----ccCCHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHcCCCCCCC
Q 015393          119 SESAHRFLKLCADAGNVEACYTLGMIRFY----CLQNRGSGASLMAKAAI-------SSHAQALYSLAVIQFNGSGGSKN  187 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~----~~~d~~~A~~~~~kAA~-------~G~~~A~~~Lg~~y~~G~Gv~~~  187 (408)
                      ...+..|++.+++.|+..|++.+|.+|+.    +.+|.++|+.||+.||.       +|++.|+|.||.+|..|.++.+.
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            35799999999999999999999999994    56999999999999999       99999999999999999987554


Q ss_pred             ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          188 DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       188 ~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                        |..+|+.+|.+||+.|+++|++.||.+|+.|. .++|+.+|.+||.+|+..|+..|+-..
T Consensus       308 --d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~l  366 (552)
T KOG1550|consen  308 --DYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYRL  366 (552)
T ss_pred             --cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHHH
Confidence              89999999999999999999999999999988 679999999999999999999997663

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.46  E-value=3.5e-12  Score=113.80  Aligned_cols=122  Identities=20%  Similarity=0.295  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhc------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC---------
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFYC------LQNRGSGASLMAKAAISSHAQALYSLAVIQFNGS---------  182 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~------~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~---------  182 (408)
                      ....|++.++.+.+.+++.|+.++|++...+      ..|..+|.+||.+|++.++..|+|+|..||..|.         
T Consensus        88 ~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~  167 (248)
T KOG4014|consen   88 SLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPG  167 (248)
T ss_pred             CHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCC
Confidence            3567888888999999999999999888843      3567789999999999999999999999998771         


Q ss_pred             -CCCCC-------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          183 -GGSKN-------DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       183 -Gv~~~-------~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       |-+.+       .+|+.+|+++--+|++++++.|+.++..||..|.||++|..+|.+|-.+|-+
T Consensus       168 ~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e  232 (248)
T KOG4014|consen  168 EGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE  232 (248)
T ss_pred             CCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence             21100       0488899999999999999999999999999999999999999888888765

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.43  E-value=1.5e-12  Score=116.02  Aligned_cols=139  Identities=19%  Similarity=0.257  Sum_probs=120.2

Q ss_pred             HHHHHHHHH-HHHHcCCHHHHHHhHHHHhh----ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          119 SESAHRFLK-LCADAGNVEACYTLGMIRFY----CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       119 ~~~A~~~l~-~aAe~G~~~A~~~LG~~y~~----~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      .++|...|+ .+-+.+++.++|.+|+.++.    ..+++.+|+++|++|++.+.+.|+.++|.+..+|.-..+.+.|..+
T Consensus        51 F~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~K  130 (248)
T KOG4014|consen   51 FQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEK  130 (248)
T ss_pred             HHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHH
Confidence            456666666 56788999999999999983    4589999999999999999999999999999999765555668999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHcC----------CCcc----------ccHHHHHHHHHHHHHcCCHHHHhhh----
Q 015393          194 GVALCARAAFLGHIDALRELGHCLQDG----------YGVR----------QNIAEGRRFLVQANARELAAVLSSA----  249 (408)
Q Consensus       194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G----------~Gv~----------~d~~~A~~w~~kAA~~G~~~A~~~~----  249 (408)
                      |.+|+.+|++.++..|++.|..||..|          .|.+          +|..+|+.+-.+|.+.+++.|.++.    
T Consensus       131 a~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMy  210 (248)
T KOG4014|consen  131 AERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMY  210 (248)
T ss_pred             HHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHH
Confidence            999999999999999999999999887          2455          9999999999999999999998875    


Q ss_pred             -hccCcccc
Q 015393          250 -ACQGISTR  257 (408)
Q Consensus       250 -~~~~~~~~  257 (408)
                       .|.|++++
T Consensus       211 klGDGv~Kd  219 (248)
T KOG4014|consen  211 KLGDGVPKD  219 (248)
T ss_pred             HccCCCCcc
Confidence             34455554

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.71  E-value=5.3e-09  Score=70.15  Aligned_cols=28  Identities=54%  Similarity=1.242  Sum_probs=26.2

Q ss_pred             cCCccCCccccCChhHHHhhchhhhhhhc
Q 015393          346 RRCSVCGAVNYCSRACQALDWKLRHKADC  374 (408)
Q Consensus       346 ~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C  374 (408)
                      .+|++|+.++|||++||+.||+ .||..|
T Consensus        10 ~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C   37 (37)
T PF01753_consen   10 KRCSRCKSVYYCSEECQRADWP-YHKFEC   37 (37)
T ss_dssp             EEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred             CcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence            5999999999999999999997 699887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>smart00671 SEL1 Sel1-like repeats

Probab=98.48  E-value=2.1e-07  Score=61.19  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      .|++.||.+|..|.|+++|.++|+.||++|+++|+
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            46677777777777777777777777777776664

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=98.43  E-value=3e-07  Score=61.70  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             HHHHHHHH--HHHHcCC-CccccHHHHHHHHHHHHHcCC
Q 015393          207 IDALRELG--HCLQDGY-GVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       207 ~~A~~~Lg--~~y~~G~-Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ++|++.||  .+|.+|. |+++|.++|++||++|+++||
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            45677777  6667776 677777777777777777764

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.33  E-value=1e-07  Score=90.53  Aligned_cols=63  Identities=33%  Similarity=0.721  Sum_probs=45.2

Q ss_pred             chhhHHHHHHHHhcCCCCCCCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhh
Q 015393          306 HPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA  377 (408)
Q Consensus       306 ~~A~~fmkewf~~~~~~~~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~  377 (408)
                      +++...+..........  ..-..|+  .||.+..    -++||.|+.|.||+++||+.||.. ||+.|+.+
T Consensus       300 P~A~~vl~qAi~Gqr~~--~d~~fCs--tCG~~ga----~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L  362 (396)
T KOG1710|consen  300 PSAYEVLVQAIFGQRIA--ADCQFCS--TCGHPGA----KKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL  362 (396)
T ss_pred             CcHHHHHHHHHcCceeE--Eeccccc--ccCCCCc----cchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence            44555555443322111  1246777  6776655    389999999999999999999995 99999977

>smart00671 SEL1 Sel1-like repeats

Probab=98.32  E-value=9.3e-07  Score=58.07  Aligned_cols=36  Identities=36%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393          168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH  206 (408)
Q Consensus       168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~  206 (408)
                      +.|++.||.+|..|.|+++   |..+|+.||++||++|+
T Consensus         1 ~~a~~~lg~~~~~G~g~~~---d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLGVKK---DLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCCCCc---CHHHHHHHHHHHHHccC
Confidence            4689999999999999877   99999999999999885

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=98.26  E-value=1e-06  Score=59.03  Aligned_cols=36  Identities=36%  Similarity=0.543  Sum_probs=32.0

Q ss_pred             HHHHHHHH--HHHHcCC-CCCCCccCHHHHHHHHHHHHhCCC
Q 015393          168 AQALYSLA--VIQFNGS-GGSKNDKDLRAGVALCARAAFLGH  206 (408)
Q Consensus       168 ~~A~~~Lg--~~y~~G~-Gv~~~~~d~~kA~~~~~kAA~~G~  206 (408)
                      ++|+|.||  .+|.+|. |+++   |..+|++||++||++||
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~---d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPK---DYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCH---HHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccc---cccchHHHHHHHHHccC
Confidence            58999999  8889998 7766   99999999999999986

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.23  E-value=1.7e-05  Score=82.61  Aligned_cols=121  Identities=18%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             hhhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393          113 IKANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       113 ~~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      +.......+|+.+|.+|...  .+++|++|||.+|. ..+.++.|..+|++|-+-  +.+.|..|||.+|.+ .|     
T Consensus       330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qg-----  402 (966)
T KOG4626|consen  330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QG-----  402 (966)
T ss_pred             HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cc-----
Confidence            34444567788888877664  58888888888887 567788888888887765  577788888888854 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                       ++.+|+..|+.|..-  ...+|+.++|..|..    -+|...|+..|.+|..-.-+.|
T Consensus       403 -nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke----~g~v~~A~q~y~rAI~~nPt~A  456 (966)
T KOG4626|consen  403 -NLDDAIMCYKEALRIKPTFADALSNMGNTYKE----MGDVSAAIQCYTRAIQINPTFA  456 (966)
T ss_pred             -cHHHHHHHHHHHHhcCchHHHHHHhcchHHHH----hhhHHHHHHHHHHHHhcCcHHH
Confidence             677788888877664  456777777777743    5677777777777776655444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.16  E-value=5.4e-05  Score=69.96  Aligned_cols=115  Identities=15%  Similarity=0.067  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHH-Hc-CCCCCCCccCHH
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQ-FN-GSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y-~~-G~Gv~~~~~d~~  192 (408)
                      .++++..|+++.+  ..|+++++.||.+|. ..+++++|+..|++|...  .++...+.+|.++ .. |..      +..
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~------~~~  127 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH------MTP  127 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC------CcH
Confidence            4677777777665  479999999999998 789999999999999886  4899999999864 33 322      357


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA  244 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~  244 (408)
                      +|.++|+++...  .++.+++.||..++.    ..|+++|+.+|+++.+...+.
T Consensus       128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        128 QTREMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Confidence            999999999987  689999999999986    789999999999999876553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.07  E-value=0.0001  Score=64.49  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=86.6

Q ss_pred             HHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Q 015393          123 HRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCAR  200 (408)
Q Consensus       123 ~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~k  200 (408)
                      ..+|+++.+.. |...+.+|..+. ..+++++|+.+|+++...  .++.+.+++|.++.. .|      ++++|+.+|++
T Consensus        13 ~~~~~~al~~~-p~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~y~~   83 (144)
T PRK15359         13 EDILKQLLSVD-PETVYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LK------EYTTAINFYGH   83 (144)
T ss_pred             HHHHHHHHHcC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-Hh------hHHHHHHHHHH
Confidence            34566665543 555777888887 688999999999998877  588899999998865 44      88899999999


Q ss_pred             HHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          201 AAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       201 AA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      |...  +++.+.+++|.+|..    ..+.++|+..|.+|.....
T Consensus        84 Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         84 ALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             HHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence            9886  789999999999976    6789999999999987543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.07  E-value=5.4e-05  Score=78.97  Aligned_cols=107  Identities=17%  Similarity=0.078  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      -|+.-|++|.+.  ..++|+.|||..+- ..++..+|..+|.+|...  .|++|++|||.+|.. .|      .++.|..
T Consensus       304 lAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~------~~e~A~~  375 (966)
T KOG4626|consen  304 LAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QG------KIEEATR  375 (966)
T ss_pred             HHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------cchHHHH
Confidence            344444444332  23444444444433 334444455555554443  245555555555532 12      3344555


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|++|.+-  +...|..+||.+|.+    ..++.+|+..|++|..
T Consensus       376 ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  376 LYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALR  416 (966)
T ss_pred             HHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHh
Confidence            55555442  444455555555543    3455555555555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.93  E-value=0.0002  Score=60.91  Aligned_cols=98  Identities=15%  Similarity=0.026  Sum_probs=82.9

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      .+..+++.+|..|+ ..+++++|.++|+++...  .++.+.+++|.+|... |      ++.+|+.+|+++...  .++.
T Consensus        15 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~------~~~~A~~~~~~~~~~~p~~~~   86 (135)
T TIGR02552        15 EQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-K------EYEEAIDAYALAAALDPDDPR   86 (135)
T ss_pred             hhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhcCCCChH
Confidence            47788999999988 678999999999998775  4788999999999642 3      788999999999765  4688


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ..+.+|.+|..    .++.++|..+|+++.+...
T Consensus        87 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        87 PYFHAAECLLA----LGEPESALKALDLAIEICG  116 (135)
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence            99999999975    6899999999999988643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.00048  Score=69.95  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          120 ESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       120 ~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      .+|+.-|++|.+..  |-.|+|.||+.|. .-+-+.=|+.||++|...  .++.-+..||.+|.. .+      .+++|+
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~------~~~eAi  452 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LN------RLEEAI  452 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hc------cHHHHH
Confidence            34555555555543  4445555555554 334444455555555544  344455555555532 12      445555


Q ss_pred             HHHHHHHhCCCH--HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          196 ALCARAAFLGHI--DALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       196 ~~~~kAA~~G~~--~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +.|.+|...|++  .+++.||.+|++    -+|.++|..+|++=.+
T Consensus       453 KCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  453 KCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence            555555555554  455555555544    3455555555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.84  E-value=0.00087  Score=60.63  Aligned_cols=113  Identities=15%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      ....++|..+|+++.+.  .+..+.+++|.+|. ..+++++|+.+|+++...    ......+++|.+|.. .|      
T Consensus        78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------  149 (234)
T TIGR02521        78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG------  149 (234)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC------
Confidence            34567889999888765  57788999999988 678999999999999874    356788889988854 34      


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++.+|..+|.++...  +++.+.+.+|.+|..    ..+.++|..+|+++...
T Consensus       150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQT  198 (234)
T ss_pred             CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            788999999999875  467889999999976    78899999999998775

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=97.80  E-value=0.0015  Score=69.69  Aligned_cols=110  Identities=17%  Similarity=0.078  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|...++++.+.  +++++...||.++. ..+++++|+.+|++|.+..  ++.+++.||.+|.. .|      ++++|
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G------~~~eA  391 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AG------QLEEA  391 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence            57899999988775  68999999999987 6789999999999988774  78899999999864 35      78899


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|++|.+.  .++.+.+.++.++..    ..++++|+.+++++...
T Consensus       392 i~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        392 LQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHHh
Confidence            9999999886  455555555543332    24678999999998765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.79  E-value=0.0012  Score=59.72  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|..+++++.+.  .++.+.+.+|.+|. ..+++++|+++|+++.+.  .+..+.+++|.+|.. .|      ++
T Consensus        44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g------~~  115 (234)
T TIGR02521        44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QG------KY  115 (234)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc------cH
Confidence            34567889999888764  57889999999998 679999999999999876  477899999999964 34      89


Q ss_pred             HHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFL----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+|..+|+++...    ......+.+|.+|..    ..+..+|..+|.++....
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  165 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQID  165 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            9999999999874    456788999999965    678999999999998754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.77  E-value=0.00052  Score=74.00  Aligned_cols=112  Identities=14%  Similarity=0.039  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          118 WSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      +.++|+.+|+++.+.+     +..+.+.+|.+|+ ..+++++|+.+|++|.+.  +++.+++.+|.+|.. .|      +
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~  380 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LG------D  380 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CC------C
Confidence            4668889999998765     5568889999988 688999999999999875  467889999999864 34      8


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +++|+.+|+++.+.  .++.+++.+|.+|..    ..|+++|+.+|++|.+..
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~  429 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLD  429 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            88999999999876  578999999999975    678999999999998764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.76  E-value=0.0016  Score=73.81  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          117 NWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ...++|+.+|+++.+.. ++.+.+++|.++. ..+++++|+.+|++|.+.  +++.++++||.++.. .|      ++++
T Consensus       590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G------~~ee  661 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG------DIAQ  661 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHH
Confidence            45678888888887643 5888999998887 678999999999998877  488999999988865 34      7889


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      |+..|++|.+.  +++.+.++||.+|..    ..|+++|+.+|++|.+..-
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence            99999999886  689999999999965    7889999999999987543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.69  E-value=0.0021  Score=69.34  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+..|+++.+.  .++++++.+|.+|+ ..+++++|+.+|++|.+..  +..++++||.+|.. .|      ++++|
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~~~eA  452 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EG------SIASS  452 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CC------CHHHH
Confidence            34555555554443  34555555555554 3455555555555555442  44555555555532 22      45555


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +..|+++...  .++.+.+.+|.+|..    ..++++|+..|++|...
T Consensus       453 ~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       453 MATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhc
Confidence            5555555443  345555555555543    34555555555555543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.0012  Score=66.99  Aligned_cols=93  Identities=22%  Similarity=0.196  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAK--AAISSHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      +.++|..+|+.|...  ...+|.|++|+.|. ..++.++|+++|-|  |.-.++++.++.++.+|..-       .|..+
T Consensus       505 d~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~l-------ed~aq  576 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL-------EDPAQ  576 (840)
T ss_pred             cHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------hCHHH
Confidence            478999999988754  36789999999998 78999999999977  77889999999999999742       38889


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      |++||.++-..  .++.-...||.+|.
T Consensus       577 aie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            99999999775  67878888888874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0024  Score=65.03  Aligned_cols=113  Identities=15%  Similarity=0.063  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.||++|...  +...|.-.+|-=|. .-+|...|++-|++|.+-.  +-.|+|.||..|.-- +      -..-|
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim-~------Mh~Ya  417 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM-K------MHFYA  417 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-c------chHHH
Confidence            78999999999875  57789999998887 5799999999999999886  677999999999642 2      45689


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA  243 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~  243 (408)
                      +.||++|.+.  .|..-...||.||..    -..+++|++.|.+|...|++
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhcccc
Confidence            9999999986  789999999999965    56889999999999999998

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.63  E-value=0.0017  Score=63.68  Aligned_cols=114  Identities=11%  Similarity=-0.020  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+..|+++.+.  .++.+.+++|.+|. ..+++++|+..|.+|.+.  ++..+++++|.+|.. .|      +++
T Consensus        78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g------~~~  149 (296)
T PRK11189         78 GLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GG------RYE  149 (296)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHH
Confidence            3455677777766654  46777777777776 567777777777777665  467777777777754 23      667


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|++.|+++....-.+....+...+.   ....+.++|+.+|.+++...
T Consensus       150 eA~~~~~~al~~~P~~~~~~~~~~l~---~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        150 LAQDDLLAFYQDDPNDPYRALWLYLA---ESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH---HccCCHHHHHHHHHHHHhhC
Confidence            77777777776643222222222111   12346777777777666443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.62  E-value=0.00091  Score=59.99  Aligned_cols=101  Identities=15%  Similarity=0.119  Sum_probs=76.4

Q ss_pred             HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393          131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-  204 (408)
Q Consensus       131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-  204 (408)
                      ..+...+.+++|..|. ..+++++|+.+|++|....     .+.++++||.+|.. .|      ++++|+.+|++|... 
T Consensus        31 ~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g------~~~~A~~~~~~al~~~  102 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NG------EHDKALEYYHQALELN  102 (172)
T ss_pred             HhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhC
Confidence            4467778899999987 6899999999999998653     25789999999965 44      888999999999886 


Q ss_pred             -CCHHHHHHHHHHHHcCCC---ccccHHHHHHHHHHHHH
Q 015393          205 -GHIDALRELGHCLQDGYG---VRQNIAEGRRFLVQANA  239 (408)
Q Consensus       205 -G~~~A~~~Lg~~y~~G~G---v~~d~~~A~~w~~kAA~  239 (408)
                       .++.+...+|.+|..-.-   -..+.++|+..|.+|.+
T Consensus       103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~  141 (172)
T PRK02603        103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAE  141 (172)
T ss_pred             cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHH
Confidence             678899999998854211   12455555555555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.57  E-value=0.0011  Score=58.84  Aligned_cols=96  Identities=14%  Similarity=0.083  Sum_probs=72.4

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ..+..|.+|..++ ..++++.|...|+..+...  ++...|+||.++.. .|      ++++|+..|.+|...  .++.+
T Consensus        34 ~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g------~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         34 PLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QK------HWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCchH
Confidence            3456666776665 6788888888888877664  67778888888853 33      788888888888775  68888


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+++|.+|+.    -.|++.|++-|+.|...-
T Consensus       106 ~~~ag~c~L~----lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        106 PWAAAECYLA----CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence            8888888876    568888888888887754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.56  E-value=0.0016  Score=56.94  Aligned_cols=93  Identities=13%  Similarity=-0.011  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++...  .++.+.+++|.++. ..+++++|+.+|++|...  +++.+.+++|.+|.. .|      +++
T Consensus        38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g------~~~  109 (144)
T PRK15359         38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MG------EPG  109 (144)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHH
Confidence            3456788899888765  68999999999998 689999999999999986  699999999999975 35      889


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      +|+..|++|...  +++.....+|...
T Consensus       110 eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        110 LAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999886  6777777776654

>PRK12370 invasion protein regulator; Provisional

Probab=97.56  E-value=0.002  Score=68.73  Aligned_cols=112  Identities=10%  Similarity=-0.024  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  +++.+.+.||.+|. ..+++++|+.+|++|.+..  ++.+.+.++.++.. .|      +++
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g------~~e  423 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HT------GID  423 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cc------CHH
Confidence            3467899999988765  48899999999998 6799999999999998874  55566665554433 34      678


Q ss_pred             HHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+.+++++...   +++.+.+.||.+|..    ..+.++|+.++.+....
T Consensus       424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        424 DAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhhc
Confidence            999999999764   578889999999954    68999999999886543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.52  E-value=0.0018  Score=53.01  Aligned_cols=95  Identities=18%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G--  205 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G--  205 (408)
                      +++.|.+|..++ ..+++++|+..|+++....  +   +.+.+.+|.+|.. .|      ++.+|+.+|+++...  +  
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QG------KYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHHCCCCC
Confidence            467889999988 6899999999999998753  2   5789999999965 33      888999999999874  2  


Q ss_pred             -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                       .+.+.+.+|.+|..    ..+..+|..+|.++.+..
T Consensus        74 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        74 KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHC
Confidence             36789999999976    688999999999998863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.48  E-value=0.011  Score=59.27  Aligned_cols=110  Identities=20%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcC--C-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCcc
Q 015393          119 SESAHRFLKLCADAG--N-----VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G--~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      .++|+.++++..+.+  +     ...++.||.+|. ..+++++|+.+|+++.+..  +..+.+.||.+|.. .|      
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------  228 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QG------  228 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC------
Confidence            466777777665542  2     223456677666 5677788888888776543  66777778777754 34      


Q ss_pred             CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          190 DLRAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       190 d~~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++++|+++|+++.+.+.   ..++..|+.+|..    ..+.++|+.+++++...
T Consensus       229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEE  278 (389)
T ss_pred             CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            67778888888776532   3456667777754    45777788877777664

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.46  E-value=0.0044  Score=60.73  Aligned_cols=111  Identities=15%  Similarity=0.041  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHc------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          120 ESAHRFLKLCADA------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       120 ~~A~~~l~~aAe~------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      +.++.-+.+..+.      +.+...+.+|.+|. ..++..+|+..|++|.+.  .++.+++++|.+|.. .|      ++
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g------~~  114 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AG------NF  114 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC------CH
Confidence            4445555444432      34677889999887 678899999999998876  478899999988854 34      88


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ++|+..|.+|.+.  ++..+++++|.+|..    .++.++|+..|+++.+...
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P  163 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDP  163 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence            8999999999876  678899999998865    4688899999999887653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.35  E-value=0.013  Score=67.85  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=89.5

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH--------------HHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ--------------ALYSLAVI  177 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~--------------A~~~Lg~~  177 (408)
                      ....++|+..|+++.+.  .++++.+.||.+|+ ..+++++|+.+|++|.+..  +..              ....+|.+
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            44568899999988774  68999999999998 6899999999999998754  211              11233444


Q ss_pred             HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.. .|      ++.+|+.+|+++...  .++.+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus       361 ~~~-~g------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        361 ALK-AN------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRM  414 (1157)
T ss_pred             HHH-CC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            432 33      889999999999886  678899999999976    67999999999999874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.33  E-value=0.00094  Score=50.09  Aligned_cols=64  Identities=30%  Similarity=0.362  Sum_probs=53.8

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      ++..++.+|.+++ ..+++++|+.+|++|.+..  ++.+++++|.+|..- |  +   ++.+|++.|++|.+.
T Consensus         2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~--~---~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-G--K---DYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-T--T---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C--c---cHHHHHHHHHHHHHc
Confidence            5788899999998 6899999999999998774  889999999999753 2  1   588999999998753

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.33  E-value=0.003  Score=47.57  Aligned_cols=92  Identities=21%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      +++.+|.+|+ ..+++++|+.+|+++.+..  +..+.+.+|.+|..- +      ++.+|+.+|+++...  .+..+.+.
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~a~~~~~~~~~~~~~~~~~~~~   73 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-G------KYEEALEDYEKALELDPDNAKAYYN   73 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhCCCcchhHHHH
Confidence            5678888887 5789999999999988754  457888999998652 2      788999999998875  45668889


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.++..    ..+.++|..++.++...
T Consensus        74 ~~~~~~~----~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          74 LGLAYYK----LGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHH----HHhHHHHHHHHHHHHcc
Confidence            9988865    56788999999887653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.33  E-value=0.0067  Score=66.31  Aligned_cols=114  Identities=12%  Similarity=-0.051  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|..||+.+.+.  .+..|..+++.++. -.+.+++|+.+++++....  ++.+++.+|..+.. .|      .++
T Consensus       100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g------~~~  171 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IG------QSE  171 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc------chH
Confidence            3468899999988764  79999999999988 6889999999999998775  99999999999853 56      788


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +|...|++++..  +++.++..+|+.+.+    ..+.++|..-|++|.+.-.
T Consensus       172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        172 QADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhC
Confidence            999999999965  468999999999976    6789999999999988644

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.28  E-value=0.0064  Score=70.49  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC--------
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG--------  184 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv--------  184 (408)
                      ...++|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+++|++|.+.  ++..+.+.|+.+|..+.--        
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            3467899999988765  68899999999998 789999999999999874  5788888888887532100        


Q ss_pred             -C--------------------------CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393          185 -S--------------------------KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLV  235 (408)
Q Consensus       185 -~--------------------------~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~  235 (408)
                       .                          ....++++|+++|++|.+.  .++.+.+.||.+|..    ..+.++|+..|+
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~  519 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMR  519 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence             0                          0012788999999999876  678999999999976    678999999999


Q ss_pred             HHHHc
Q 015393          236 QANAR  240 (408)
Q Consensus       236 kAA~~  240 (408)
                      ++.+.
T Consensus       520 ~al~~  524 (1157)
T PRK11447        520 RLAQQ  524 (1157)
T ss_pred             HHHHc
Confidence            99874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.26  E-value=0.0035  Score=63.18  Aligned_cols=93  Identities=17%  Similarity=0.061  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|.++.+.  .++.+++++|.+|+ ..+++++|+.++++|.+.  .++.++++||.+|.. .|      ++.
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg------~~~   87 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE------EYQ   87 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC------CHH
Confidence            3457888888888765  57888999999888 678899999999998776  478899999988864 45      888


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      +|+.+|+++...  ++..++..++.+.
T Consensus        88 eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999876  5788877777775

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.25  E-value=0.0061  Score=54.29  Aligned_cols=96  Identities=15%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH  206 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~  206 (408)
                      ...+.+++|..+. ..+++++|+.+|++|...  +   .+.++++||.+|.. .|      ++++|+..|++|...  .+
T Consensus        34 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g------~~~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         34 EAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NG------EHTKALEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCc
Confidence            3456678888887 678899999999999755  3   23589999999975 34      788999999999864  56


Q ss_pred             HHHHHHHHHHHHcCCC----ccccHHHHHHHHHHHH
Q 015393          207 IDALRELGHCLQDGYG----VRQNIAEGRRFLVQAN  238 (408)
Q Consensus       207 ~~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~kAA  238 (408)
                      ..+..++|.+|.. .|    -..+..+|..+|.+|.
T Consensus       106 ~~~~~~la~i~~~-~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        106 PQALNNMAVICHY-RGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHH-hhHHHHHcccHHHHHHHHHHHH
Confidence            7888888888862 11    3456665655555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.23  E-value=0.016  Score=63.40  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|..++++..+  ..++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.++.+||.+|... |      + .
T Consensus       750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~------~-~  820 (899)
T TIGR02917       750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL-K------D-P  820 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C------c-H
Confidence            345667777776654  357788888888887 577888888888887766  3677788888887642 2      4 5


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +|+.+|+++.+.  +++.....+|.+|..    ..+.++|..+|++|.+.+.
T Consensus       821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       821 RALEYAEKALKLAPNIPAILDTLGWLLVE----KGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence            688888888765  677777888888755    5678888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.0043  Score=63.05  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH--HhCCCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARA--AFLGHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kA--A~~G~~~A  209 (408)
                      |+.|+.+-|.+-+ ..+|+++|+++|+.|....  ..+|+|++|..|.. .|      ++++|+++|.+-  .-.++++-
T Consensus       489 n~~a~~nkgn~~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~------~ldeald~f~klh~il~nn~ev  560 (840)
T KOG2003|consen  489 NAAALTNKGNIAF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LG------NLDEALDCFLKLHAILLNNAEV  560 (840)
T ss_pred             CHHHhhcCCceee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hc------CHHHHHHHHHHHHHHHHhhHHH
Confidence            4444444444433 4589999999999998765  67899999999853 45      899999999874  55799999


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+.|+.+|+-    -.|..+|++||.+|...
T Consensus       561 l~qianiye~----led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  561 LVQIANIYEL----LEDPAQAIELLMQANSL  587 (840)
T ss_pred             HHHHHHHHHH----hhCHHHHHHHHHHhccc
Confidence            9999999954    68999999999999763

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.20  E-value=0.0071  Score=60.99  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             HhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393          140 TLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH  215 (408)
Q Consensus       140 ~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~  215 (408)
                      ..|..++ ..+++.+|+++|++|.+.  +++.+++++|.+|.. .|      ++.+|+.+|++|.+.  .++.+++.||.
T Consensus         7 ~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g------~~~eAl~~~~~Al~l~P~~~~a~~~lg~   78 (356)
T PLN03088          7 DKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LG------NFTEAVADANKAIELDPSLAKAYLRKGT   78 (356)
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3455555 689999999999999877  489999999999975 44      899999999999886  68999999999


Q ss_pred             HHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          216 CLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       216 ~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+. .|   ++++|+.+|++|....
T Consensus        79 ~~~~-lg---~~~eA~~~~~~al~l~  100 (356)
T PLN03088         79 ACMK-LE---EYQTAKAALEKGASLA  100 (356)
T ss_pred             HHHH-hC---CHHHHHHHHHHHHHhC
Confidence            8865 45   6889999999999764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.18  E-value=0.022  Score=62.18  Aligned_cols=111  Identities=10%  Similarity=-0.006  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHH----HHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRG----SGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~----~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      ..++|+..|+++.+.  +++.+.++||.+|. ..++++    +|+.+|++|.+.  +++.+..+||.+|.. .|      
T Consensus       227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g------  298 (656)
T PRK15174        227 KYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TG------  298 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC------
Confidence            345566666655543  35666666676666 233333    366666666654  356666666666643 23      


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++++|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+..|+++.+.
T Consensus       299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLARE  347 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            566666666666654  455666666666644    45666666666666643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.18  E-value=0.013  Score=58.83  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393          117 NWSESAHRFLKLCADAGN------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      ...++|+.+++++.+.++      ..+.+.||.+|. ..+++++|+.+|+++.+.  .+..+...|+.+|.. .|     
T Consensus        83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g-----  155 (389)
T PRK11788         83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EK-----  155 (389)
T ss_pred             CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hc-----
Confidence            345677777777666543      245677777776 567888888888887764  356677777777754 33     


Q ss_pred             cCHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          189 KDLRAGVALCARAAFLGHI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                       ++++|+++|+++...+..       ..+..||.+|..    ..+.++|..+|+++.+...
T Consensus       156 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        156 -DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADP  211 (389)
T ss_pred             -hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCc
Confidence             777888888887765421       134456666654    6888888888888887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.17  E-value=0.021  Score=62.25  Aligned_cols=114  Identities=11%  Similarity=-0.027  Sum_probs=93.8

Q ss_pred             hcCCHH---HHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCC
Q 015393          115 ANNWSE---SAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKN  187 (408)
Q Consensus       115 ~~~~~~---~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~  187 (408)
                      .+.+.+   +|+.+|+++.+  ..++.+.++||.+|. ..+++++|+.+|+++.+.  .++.+.++||.+|.. .|    
T Consensus       259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G----  332 (656)
T PRK15174        259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VG----  332 (656)
T ss_pred             cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC----
Confidence            344544   58999998876  468899999999998 688999999999999876  488899999999965 45    


Q ss_pred             ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        ++++|+..|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus       333 --~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~  381 (656)
T PRK15174        333 --QYTAASDEFVQLAREKGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQA  381 (656)
T ss_pred             --CHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence              889999999999876  345566667887754    57899999999999876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.0033  Score=66.38  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=85.7

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      +.+.|+++|++|...  +...|+-.+|-=+. ...++++|..+|++|..-  .|--|+|-||.+|..- +      -++.
T Consensus       436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-e------k~e~  507 (638)
T KOG1126|consen  436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-E------KLEF  507 (638)
T ss_pred             HHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-c------hhhH
Confidence            577899999988654  56777777775554 457788999999998765  4888999999999642 2      4778


Q ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          194 GVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       194 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      |...|++|.+-+  +..-+..+|.+|+.    -+..++|+.+|++|+-...
T Consensus       508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  508 AEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             HHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCC
Confidence            888999998864  45556677888865    6788899999999986543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.03  E-value=0.011  Score=50.19  Aligned_cols=96  Identities=23%  Similarity=0.154  Sum_probs=72.2

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G--  205 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G--  205 (408)
                      |++.|.++.+|. ..++.++|+.+|++|.+.|-     ..+...||..|.+ .|      .+++|+.+++++...  +  
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG------~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG------RYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcc
Confidence            357888888887 67888999999999988873     4477788888864 56      788999999988865  3  


Q ss_pred             -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                       +......+++.+.+    ....++|+.|+..+.....
T Consensus        73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la~~~  106 (120)
T PF12688_consen   73 LNAALRVFLALALYN----LGRPKEALEWLLEALAETL  106 (120)
T ss_pred             ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence             44566667777655    5677889999888776433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.97  E-value=0.082  Score=60.19  Aligned_cols=114  Identities=19%  Similarity=0.171  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|..+|+++.+..  +....+.|+..+. ..+++++|+.+|++|.+.. ++.+.+++|.++.. .|      +++
T Consensus       555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~-lG------~~d  626 (987)
T PRK09782        555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ-RH------NVP  626 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC------CHH
Confidence            445678999999887764  3333333332222 3589999999999999753 58899999999865 45      889


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+.+|++|...  +++.+.++||.++..    ..+.++|+..|++|.+..
T Consensus       627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        627 AAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence            999999999987  689999999999976    578999999999999763

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.97  E-value=0.0045  Score=64.52  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=90.2

Q ss_pred             HHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHH
Q 015393          123 HRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVAL  197 (408)
Q Consensus       123 ~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~  197 (408)
                      ..||..+-+.+   +++.+..||.+|. ..+++++|+..|+.|..-.  +..-+..||-.+.+|.       ..++|+.-
T Consensus       415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~-------~s~EAIsA  486 (579)
T KOG1125|consen  415 ELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN-------RSEEAISA  486 (579)
T ss_pred             HHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc-------ccHHHHHH
Confidence            45555555665   7999999999998 7899999999999998774  6677889999999875       34689999


Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          198 CARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       198 ~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      |.+|.++  |++++-|+||+.|.+    -..+.+|.++|..|..
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHH
Confidence            9999998  999999999999987    6789999999999886

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.94  E-value=0.018  Score=53.82  Aligned_cols=118  Identities=8%  Similarity=-0.010  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHHc--CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcCCC-CCC
Q 015393          118 WSESAHRFLKLCADA--GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNGSG-GSK  186 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G~G-v~~  186 (408)
                      ..++|+..|++....  .++   .+.+.+|.+|+ ..+++++|+..|+++.+..  ++   .++|.+|.+|..-.+ +..
T Consensus        48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~  126 (235)
T TIGR03302        48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR  126 (235)
T ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence            356788888877664  343   68899999998 7899999999999998763  33   489999999976421 111


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHH---H--------------HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          187 NDKDLRAGVALCARAAFL--GHIDA---L--------------RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~--G~~~A---~--------------~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ...+..+|++.|+++...  .+..+   .              +.+|.+|+.    ..+..+|+.+|+++.+.
T Consensus       127 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       127 DQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVEN  195 (235)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence            223788999999999874  23222   2              355666654    57899999999999875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.89  E-value=0.015  Score=49.28  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|..+|+++.+  ..++.+.+.+|.+|. ..+++.+|+.+|+++...+  ++...+.+|.+|.. .|      +.++
T Consensus        32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g------~~~~  103 (135)
T TIGR02552        32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LG------EPES  103 (135)
T ss_pred             cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cC------CHHH
Confidence            35788899988766  458899999999998 5788999999999997665  68899999999974 44      8999


Q ss_pred             HHHHHHHHHhCC
Q 015393          194 GVALCARAAFLG  205 (408)
Q Consensus       194 A~~~~~kAA~~G  205 (408)
                      |+.+|+++.+..
T Consensus       104 A~~~~~~al~~~  115 (135)
T TIGR02552       104 ALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.88  E-value=0.0044  Score=46.35  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccc-cHHHHHHHHHHHHHc
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQ-NIAEGRRFLVQANAR  240 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~-d~~~A~~w~~kAA~~  240 (408)
                      ++..++.+|.+|.. .|      ++.+|+.+|.+|.+.  .++.+++++|.+|..    .. +.++|+..|++|.+.
T Consensus         2 ~a~~~~~~g~~~~~-~~------~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQ-QG------DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHc
Confidence            57788999999976 34      899999999999986  678999999999976    33 799999999999763

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.84  E-value=0.016  Score=51.43  Aligned_cols=82  Identities=16%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             hcCCHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          115 ANNWSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .....++|..+|+..+  +..+++..|+||.++. ..+++.+|++.|.+|...  .+|.+.+++|.+|+.. |      |
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l-G------~  118 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC-D------N  118 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc-C------C
Confidence            3445678888888665  5568999999999998 789999999999999876  5999999999999864 4      7


Q ss_pred             HHHHHHHHHHHHhC
Q 015393          191 LRAGVALCARAAFL  204 (408)
Q Consensus       191 ~~kA~~~~~kAA~~  204 (408)
                      ...|.+-|+.|...
T Consensus       119 ~~~A~~aF~~Ai~~  132 (157)
T PRK15363        119 VCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88999999988765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.81  E-value=0.0048  Score=47.44  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF  203 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~  203 (408)
                      ..++++||.+|. ..+++++|+.+|++|.+.    |     .+.++++||.+|.. .|      ++++|+++|++|.+
T Consensus         5 a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g------~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LG------DYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence            357889999998 789999999999999844    2     25688899999964 45      89999999999865

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.79  E-value=0.048  Score=48.76  Aligned_cols=111  Identities=16%  Similarity=0.092  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCcc
Q 015393          117 NWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      ...++|+.+|+++.+..     .+.+.++||.+|. ..+++++|+.+|++|...  .++.+.+.+|.+|..-.-......
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~  127 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG  127 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhh
Confidence            45678999999888653     2579999999998 689999999999999886  578899999999865322111122


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          190 DLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       190 d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +..+|+..|.+|.+      .+.-+.-     .-+.|...+..|+..+.+
T Consensus       128 ~~~~A~~~~~~A~~------~~~~a~~-----~~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        128 DQDEAEALFDKAAE------YWKQAIR-----LAPNNYIEAQNWLKTTGR  166 (172)
T ss_pred             CHHHHHHHHHHHHH------HHHHHHh-----hCchhHHHHHHHHHhcCc
Confidence            56666666666543      1111111     124556666666665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.77  E-value=0.018  Score=54.04  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ..+...|..-+++|.+  ..+..|+..++.+|. -.+..+.|.+.|++|...  ++.+-..|.|.++. +.|      -+
T Consensus        48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg------~~  119 (250)
T COG3063          48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQG------RP  119 (250)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCC------Ch
Confidence            3456778888887765  457888888888887 577888888899988765  56777888887774 344      57


Q ss_pred             HHHHHHHHHHHhC---C-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFL---G-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~---G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|..||++|.+.   | .++..-++|.|-..    ..+..+|.++|++|.+.
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~  168 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALEL  168 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHh
Confidence            7888999998886   3 35677788888865    56788888889888874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.73  E-value=0.11  Score=56.74  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|..+|+++.+.  .++.+++.++.+++ ..+++++|+.+++++...  .++.+.+.+|.+|.. .|      +++
T Consensus       139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~  210 (899)
T TIGR02917       139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LG------NIE  210 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cC------CHH
Confidence            3456788888877653  46777888887776 567788888888877654  366777778777754 33      677


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|..+|+++.+.  +++.+.+.++.++..    ..+.++|..++.++.+
T Consensus       211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~  255 (899)
T TIGR02917       211 LALAAYRKAIALRPNNPAVLLALATILIE----AGEFEEAEKHADALLK  255 (899)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            788888887664  456677777776644    3355555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.59  E-value=0.056  Score=50.78  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .-.+.|.+.|++|...  ++.+-..|.|.++. ..+.+++|..||++|.+.-    .+...-|+|++-+. -|      .
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~g------q  154 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AG------Q  154 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cC------C
Confidence            3367788888887654  57778888888777 5678888888888888773    45677788888764 23      5


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS  248 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~  248 (408)
                      ..+|.++|++|.+.  .++.+...|+.+...    +.|+..|..++++-...|.+.|-+-
T Consensus       155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL  210 (250)
T COG3063         155 FDQAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPARLYLERYQQRGGAQAESL  210 (250)
T ss_pred             chhHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHHHHHHHHHHhcccccHHHH
Confidence            66888888888775  577788888888765    7788888888888888877655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.56  E-value=0.04  Score=53.27  Aligned_cols=97  Identities=15%  Similarity=0.184  Sum_probs=79.6

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---  204 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---  204 (408)
                      ++..+.|..+.-++...+++++|+..|++....-  +   +.|+|.||.+|+. .|      ++.+|+.+|++....   
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g------~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KG------KKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCC
Confidence            3457788887766435689999999999988752  2   5799999999975 34      899999999999964   


Q ss_pred             --CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          205 --GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       205 --G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        -.++|++.||.+|..    ..|..+|+..|++..+.
T Consensus       213 s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        213 SPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence              358899999999975    57999999999998875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.54  E-value=0.008  Score=44.47  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=45.9

Q ss_pred             HHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          139 YTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      |.+|..|+ ..+++++|+..|+++.+..  ++.+++.||.++.. .|      ++.+|+.+|+++.+.
T Consensus         1 ~~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QG------RYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHH
T ss_pred             ChHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHH
Confidence            45777777 6788999999999988875  88899999999874 44      788899999888754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.52  E-value=0.039  Score=60.77  Aligned_cols=115  Identities=11%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          119 SESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .+.+..+..-+...-     -++++|.+|..|. ..+|+++|+.||.+|...   ++.-+.+-||.||.. .|      |
T Consensus       286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~------d  357 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RG------D  357 (1018)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hc------h
Confidence            344555544443322     4567899999987 788999999999887654   347788889988864 33      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++.+...|++-..+  ++.+.+..||.+|..---.+--..+|..+..++.+.-
T Consensus       358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            88888888888875  7888888888888643112223345555555555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.46  E-value=0.058  Score=59.89  Aligned_cols=110  Identities=12%  Similarity=-0.026  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  +++.+.+.|+.++. ..+++++|+.+++++.+.  .++. .+.||.+|.. .|      +.+
T Consensus        63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g------~~~  133 (765)
T PRK10049         63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG------RHW  133 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC------CHH
Confidence            3456888999887554  78999999999988 689999999999998875  4777 8999999864 34      888


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|+..|+++.+.  +++.+.+.++.++..    ....++|+..++++..
T Consensus       134 ~Al~~l~~al~~~P~~~~~~~~la~~l~~----~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        134 DELRAMTQALPRAPQTQQYPTEYVQALRN----NRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHhCCC
Confidence            999999999886  689999999999976    3677789988887775

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.44  E-value=0.066  Score=49.40  Aligned_cols=85  Identities=19%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccC--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCcc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQ--NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~--d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      .+..++|+..|+++...  .+++..+.+|.+++...+  ...+|.+.|++|....  ++.++++||..++. .|      
T Consensus        86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g------  158 (198)
T PRK10370         86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA------  158 (198)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC------
Confidence            34568899999988764  589999999986532333  3699999999998774  89999999999975 45      


Q ss_pred             CHHHHHHHHHHHHhCCCH
Q 015393          190 DLRAGVALCARAAFLGHI  207 (408)
Q Consensus       190 d~~kA~~~~~kAA~~G~~  207 (408)
                      |+++|+.+|+++.+...+
T Consensus       159 ~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        159 DYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             CHHHHHHHHHHHHhhCCC
Confidence            899999999999887544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.44  E-value=0.017  Score=45.16  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCC----HHHHHHhHHHHhhccCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Q 015393          120 ESAHRFLKLCADAGN----VEACYTLGMIRFYCLQNRGSGASLMAKA-AISSHAQALYSLAVIQF  179 (408)
Q Consensus       120 ~~A~~~l~~aAe~G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kA-A~~G~~~A~~~Lg~~y~  179 (408)
                      +.|+.++++..+...    ....+.||.+|+ ..+++++|+.++++. ....++...+.+|.+|.
T Consensus         6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL   69 (84)
T ss_dssp             HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            444444444443322    223333455554 345555555555441 11123445555555443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.41  E-value=0.064  Score=59.14  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ..+++..+.++-.  ..||.+...|+..|+ ..+|+..+..+++-|...-     -+++.|+||.+|.. .|      |+
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha-~G------d~  323 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA-QG------DF  323 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh-hc------cH
Confidence            4578888887754  458999999999887 6899999999998887664     35679999999964 56      99


Q ss_pred             HHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|+.||.+|...   +++-+.+-||.||..    ..|++.+...|++-..+
T Consensus       324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~  371 (1018)
T KOG2002|consen  324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQ  371 (1018)
T ss_pred             HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHh
Confidence            9999999999764   448899999999976    78999999999998875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.39  E-value=0.012  Score=60.33  Aligned_cols=70  Identities=16%  Similarity=0.083  Sum_probs=59.0

Q ss_pred             HHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH---HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          130 ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ---ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       130 Ae~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~---A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      ++..+++++++||..|+ ..+++++|+.+|++|.+..  +++   |+||+|.+|.. .|      ++++|+..|++|.+.
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG------r~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE------EGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHh
Confidence            67789999999999998 6899999999999998874  554   49999999965 45      889999999999987


Q ss_pred             CCH
Q 015393          205 GHI  207 (408)
Q Consensus       205 G~~  207 (408)
                      +++
T Consensus       142 sn~  144 (453)
T PLN03098        142 YNL  144 (453)
T ss_pred             cch
Confidence            543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.37  E-value=0.029  Score=54.58  Aligned_cols=92  Identities=17%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL----  204 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~----  204 (408)
                      +....+.+|.  ..++.+|+.+|++|++.    |.    +..+..+|.+|....|      |+++|+++|++|++.    
T Consensus        77 ~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~------d~e~Ai~~Y~~A~~~y~~e  148 (282)
T PF14938_consen   77 AYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG------DYEKAIEYYQKAAELYEQE  148 (282)
T ss_dssp             HHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHC
Confidence            3344455554  44999999999999854    54    5578899999976545      899999999999984    


Q ss_pred             CCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          205 GHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       205 G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |..    .....+|.++..    ..++.+|+..|++.+..
T Consensus       149 ~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  149 GSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            432    345567777754    45999999999998864

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.36  E-value=0.0023  Score=44.71  Aligned_cols=42  Identities=24%  Similarity=0.580  Sum_probs=34.2

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393           58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS  104 (408)
Q Consensus        58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~  104 (408)
                      +..||+|++..||+.+     ++.|+.++.++||.|+....++.++.
T Consensus         1 i~~LP~Eil~~If~~L-----~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-----DPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS------HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            4689999999999876     57799999999999999987765544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.32  E-value=0.035  Score=53.47  Aligned_cols=109  Identities=17%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          119 SESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .+++..+++++.+.    .++...+.+|.+|. ..++.++|+++|++|.+.  +++++...|+.++.. .|      +..
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~------~~~  197 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MG------DYD  197 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC------HHH
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC------ChH
Confidence            45666676664432    46677777888877 577888888888888876  367777778777742 23      444


Q ss_pred             H---HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 A---GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 k---A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +   ++.-+.+.. ..++.-...||.+|..    -.+.++|+.||+++...
T Consensus       198 ~~~~~l~~~~~~~-~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  198 EAREALKRLLKAA-PDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHHHHHHH--HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-cCHHHHHHHHHHHhcc----ccccccccccccccccc
Confidence            4   444444444 2455566677777765    56788888888888873

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.27  E-value=0.32  Score=54.10  Aligned_cols=110  Identities=11%  Similarity=0.010  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+..|.++..  .....+...+|.+|. ..+++++|+.+|+++.+.  +++.+.+.|+.++.. .|      ++.+
T Consensus        30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g------~~~e  101 (765)
T PRK10049         30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AG------QYDE  101 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHH
Confidence            45677777777764  344556888888887 678888999999887666  578888888888854 33      7788


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |+.+++++.+.  .++. .+.||.+|..    ..+.++|+..|+++.+.
T Consensus       102 A~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~  145 (765)
T PRK10049        102 ALVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPR  145 (765)
T ss_pred             HHHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            88999888775  5677 8888888865    67888888888888875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.26  E-value=0.047  Score=53.05  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCcc
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      ..+.|..+|.+|+            ..|. ..+++++|.+.|.+|++.    ++    ..+....+.+|..+        
T Consensus        30 ~~e~Aa~~y~~Aa------------~~fk-~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--------   88 (282)
T PF14938_consen   30 DYEEAADLYEKAA------------NCFK-LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--------   88 (282)
T ss_dssp             HHHHHHHHHHHHH------------HHHH-HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--------
T ss_pred             CHHHHHHHHHHHH------------HHHH-HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--------
Confidence            3567788887774            3343 567888888888888754    22    34556677777654        


Q ss_pred             CHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          190 DLRAGVALCARAAF----LGHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       190 d~~kA~~~~~kAA~----~G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++.+|+.+|++|++    .|.+    ..+.++|.+|..-.   .|+++|+++|++|++.
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence            77899999999987    4764    46888999997621   6999999999999974

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.26  E-value=0.013  Score=44.88  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL----GH-----IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~-----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      +.++.+||.+|. ..|      ++++|+.+|++|.+.    |+     +.+.++||.+|..    ..|.++|+.+|++|.
T Consensus         5 a~~~~~la~~~~-~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYR-ELG------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            457889999997 455      899999999999852    32     4578999999966    789999999999997


Q ss_pred             H
Q 015393          239 A  239 (408)
Q Consensus       239 ~  239 (408)
                      +
T Consensus        74 ~   74 (78)
T PF13424_consen   74 D   74 (78)
T ss_dssp             H
T ss_pred             h
Confidence            5

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.23  E-value=0.054  Score=48.14  Aligned_cols=62  Identities=18%  Similarity=0.060  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQF  179 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  179 (408)
                      ...++|+.+|+++....     .+.+.++||.+|. ..+++++|+.+|++|...  .+..+.++||.+|.
T Consensus        49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34678999999997652     2458999999999 689999999999999865  46788999999886

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.059  Score=52.37  Aligned_cols=108  Identities=20%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393          128 LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-  204 (408)
Q Consensus       128 ~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-  204 (408)
                      .+.+.+|++-+..||.+|+ ..++...|+.-|.+|...  .+++..-.+|.++....| .+   +..++...|++|... 
T Consensus       149 L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~---~ta~a~~ll~~al~~D  223 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQ---MTAKARALLRQALALD  223 (287)
T ss_pred             HHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Cc---ccHHHHHHHHHHHhcC
Confidence            3467799999999999999 689999999999999976  478888888877655543 22   677999999999986 


Q ss_pred             -CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393          205 -GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA  244 (408)
Q Consensus       205 -G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~  244 (408)
                       .++.+++.||..++.    +.|+.+|+..+++=.+...+.
T Consensus       224 ~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         224 PANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             CccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCC
Confidence             689999999999987    889999999998877755443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.16  E-value=0.037  Score=43.27  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             cCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHcCCCc
Q 015393          149 LQNRGSGASLMAKAAISSH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA-FLGHIDALRELGHCLQDGYGV  223 (408)
Q Consensus       149 ~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA-~~G~~~A~~~Lg~~y~~G~Gv  223 (408)
                      .++++.|+.+|++..+...    ....+.||.+|.. .|      ++.+|+.++++.- ...++...+.+|.+|.. .| 
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~------~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~-l~-   72 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QG------KYEEAIELLQKLKLDPSNPDIHYLLARCLLK-LG-   72 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TT------HHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH-TT-
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CC------CHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-hC-
Confidence            4678899999999877653    4567778999976 34      8899999997753 44677899999998865 23 


Q ss_pred             cccHHHHHHHHHHH
Q 015393          224 RQNIAEGRRFLVQA  237 (408)
Q Consensus       224 ~~d~~~A~~w~~kA  237 (408)
                        +.++|+..|++|
T Consensus        73 --~y~eAi~~l~~~   84 (84)
T PF12895_consen   73 --KYEEAIKALEKA   84 (84)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             --CHHHHHHHHhcC
Confidence              478888888775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.14  E-value=0.025  Score=41.77  Aligned_cols=58  Identities=22%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          172 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       172 ~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |.+|..|.. .|      ++++|+..|+++...  +++++.+.||.++..    .+++++|+.+|+++.+.
T Consensus         1 ~~~a~~~~~-~g------~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQ-QG------DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHH-CT------HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHH-cC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            466777754 34      899999999999987  589999999999986    78999999999999864

>PRK11906 transcriptional regulator; Provisional

Probab=96.08  E-value=0.11  Score=53.68  Aligned_cols=116  Identities=12%  Similarity=0.001  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHH-----HcCCHHHHHHhHHHHhh--------ccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC
Q 015393          119 SESAHRFLKLCA-----DAGNVEACYTLGMIRFY--------CLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSG  183 (408)
Q Consensus       119 ~~~A~~~l~~aA-----e~G~~~A~~~LG~~y~~--------~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~G  183 (408)
                      .+.|..+|.+|.     +.+.+.|+..|+..|+.        .+.+..+|++.-++|.+.+  ++.|.+.+|.++.. .|
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hc
Confidence            467888999998     44578899999988872        2467779999999998875  88899999997643 22


Q ss_pred             CCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          184 GSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       184 v~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                            ++..|..||++|...  +.+.+.|.+|.....    ..+.++|+++.++|....-...
T Consensus       353 ------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        353 ------QAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             ------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhh
Confidence                  577899999999987  578889999987743    6789999999999998765444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.05  E-value=0.04  Score=58.44  Aligned_cols=110  Identities=15%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .|+|..+|++|..  --|..|+|.||++|+ -+..++.|.-+|+||.+-+  +..-+..+|.+|.. .|      ..++|
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k------~~d~A  542 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LK------RKDKA  542 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hh------hhhHH
Confidence            6789999998865  458899999999999 5677899999999999885  45556667777754 23      66799


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|++|+-.  -++-..|.-|.+++.    -.+..+|+.-+++--+.
T Consensus       543 L~~~~~A~~ld~kn~l~~~~~~~il~~----~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  543 LQLYEKAIHLDPKNPLCKYHRASILFS----LGRYVEALQELEELKEL  586 (638)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHh----hcchHHHHHHHHHHHHh
Confidence            9999999977  578899999999964    45777888888765553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.02  E-value=0.088  Score=45.69  Aligned_cols=91  Identities=18%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-c----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-CHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS-H----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-HID  208 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-~~~  208 (408)
                      ..|.+.||.+++ ..+++++|+..|+++.+.. +    +.|.+.|+.++.. .|      ++++|+..+....... .+.
T Consensus        48 ~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~------~~d~Al~~L~~~~~~~~~~~  119 (145)
T PF09976_consen   48 ALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QG------QYDEALATLQQIPDEAFKAL  119 (145)
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHhccCcchHHH
Confidence            357777888877 6899999999999999876 2    3488889988864 34      8889999997754432 456


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      +...+|.+|..    ..|.++|+.-|++|
T Consensus       120 ~~~~~Gdi~~~----~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  120 AAELLGDIYLA----QGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence            77778999976    78999999999987

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.01  E-value=0.063  Score=58.80  Aligned_cols=97  Identities=5%  Similarity=-0.100  Sum_probs=85.8

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      -+++++++||.+.. ..+.+++|..|++.+.+.  +|..|..+++.++..-.       -+++|+.+++++...  .++.
T Consensus        84 ~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~-------~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         84 HTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ-------GIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             ccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc-------cHHHHHHHHHHHhhcCCCCHH
Confidence            46999999999988 678999999999999987  69999999999997522       688999999999887  6899


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +++.+|.++..    -..+++|...|+++...+
T Consensus       156 ~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~  184 (694)
T PRK15179        156 EILLEAKSWDE----IGQSEQADACFERLSRQH  184 (694)
T ss_pred             HHHHHHHHHHH----hcchHHHHHHHHHHHhcC
Confidence            99999999965    678999999999999755

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.98  E-value=0.086  Score=49.14  Aligned_cols=100  Identities=17%  Similarity=0.061  Sum_probs=79.0

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G  205 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G  205 (408)
                      ..+++.|.+|..|+ ..+++++|+..|+++....  ++   .+.+.+|.+|.. .|      ++.+|+..|+++.+.  +
T Consensus        31 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~------~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        31 WPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SG------DYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHHCcC
Confidence            46678899999988 6789999999999987753  33   688999999975 23      899999999999875  2


Q ss_pred             CH---HHHHHHHHHHHcCCC----ccccHHHHHHHHHHHHHc
Q 015393          206 HI---DALRELGHCLQDGYG----VRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       206 ~~---~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~kAA~~  240 (408)
                      ++   .+.+.+|.+|..-.+    ...+.++|+..|.++.+.
T Consensus       103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            33   479999999976311    235788999999999874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.89  E-value=0.14  Score=41.63  Aligned_cols=80  Identities=15%  Similarity=0.055  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHcC--C---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCC
Q 015393          117 NWSESAHRFLKLCADAG--N---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ...++|+..|.++.+..  +   +.+.+.+|.+|+ ..+++..|+.+|+++...  +   .+.+.+.+|.+|.. .|   
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~---   90 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LG---   90 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hC---
Confidence            44678888888887643  2   579999999998 688999999999999875  2   36789999999974 34   


Q ss_pred             CccCHHHHHHHHHHHHhC
Q 015393          187 NDKDLRAGVALCARAAFL  204 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~  204 (408)
                         +..+|..+|.++.+.
T Consensus        91 ---~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        91 ---DKEKAKATLQQVIKR  105 (119)
T ss_pred             ---ChHHHHHHHHHHHHH
Confidence               788999999999876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.85  E-value=0.23  Score=47.43  Aligned_cols=110  Identities=20%  Similarity=0.128  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHcCCHH--HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          121 SAHRFLKLCADAGNVE--ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       121 ~A~~~l~~aAe~G~~~--A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      ....++.+.+..-..+  ....+|...+ -.+|+..|+..+++|+...  +.++..-||.+|.+ .|      +...|..
T Consensus        84 ~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G------r~~~Ar~  155 (257)
T COG5010          84 SSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG------RFDEARR  155 (257)
T ss_pred             chHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc------ChhHHHH
Confidence            3444444444333222  2222555555 5788899999999988774  78888889999865 45      7778888


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      -|.+|.+.  +.+....+||+.|.    +..|++.|..++..|...+.
T Consensus       156 ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         156 AYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence            88888875  78888899998884    47889999999999888765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.75  E-value=0.12  Score=49.69  Aligned_cols=44  Identities=16%  Similarity=0.041  Sum_probs=12.4

Q ss_pred             CHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393          190 DLRAGVALCARAAF--LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       190 d~~kA~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      +.++|+.||+++..  .+++..+..+|.++..    ....++|..+++++
T Consensus       229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             cccccccccccccccccccccccccccccccc----cccccccccccccc
Confidence            34444444444444  2344444444444432    33444444444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.74  E-value=0.09  Score=51.86  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      +..+.|+++|+..+++  .|++|.--+|.-|++ .++++.|+.||++-...|  +++-..|+|.+.+.+.-       ++
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-------~D  375 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-------ID  375 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-------hh
Confidence            3467899999988765  578888778877774 678999999999999888  78888899998877643       34


Q ss_pred             HHHHHHHHHHhC----C-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH--cCCHHHHhh
Q 015393          193 AGVALCARAAFL----G-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA--RELAAVLSS  248 (408)
Q Consensus       193 kA~~~~~kAA~~----G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~--~G~~~A~~~  248 (408)
                      -++--|++|...    | -.+-.|+||.+.-    .-.|...|.+.|+.|.-  ..|..|+.+
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV----~iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAV----TIGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEE----eccchHHHHHHHHHHhccCcchHHHHHh
Confidence            455666666442    1 2456777777662    24577777777777764  344555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.50  E-value=0.056  Score=55.56  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=60.0

Q ss_pred             HhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393          163 AISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       163 A~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      ++-.+++++++||..|.. .|      ++++|+.+|++|.+.  ++.+   ++|++|.+|..    ..++++|+..|++|
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lG------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrA  138 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KG------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTA  138 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence            556799999999999965 35      899999999999987  5564   49999999965    68999999999999


Q ss_pred             HHcCCHH
Q 015393          238 NARELAA  244 (408)
Q Consensus       238 A~~G~~~  244 (408)
                      .+.++..
T Consensus       139 Lelsn~~  145 (453)
T PLN03098        139 LRDYNLK  145 (453)
T ss_pred             HHhcchh
Confidence            9975443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.25  E-value=0.36  Score=51.21  Aligned_cols=113  Identities=11%  Similarity=-0.036  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhh--cc-----CCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHcCCCCC
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFY--CL-----QNRGSGASLMAKAAI----SSHAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~--~~-----~d~~~A~~~~~kAA~----~G~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      .++|..+|++|.+  .+++.|+-.|+..|..  ..     .+..++.+..+++..    ...+.++..+|.++.. .|  
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g--  434 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG--  434 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC--
Confidence            4589999998876  5788898888887762  11     223455666666433    2456778888888763 45  


Q ss_pred             CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          186 KNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                          ++++|...|++|.+.. +..++..+|.+|..    ..+.++|+.+|++|....-
T Consensus       435 ----~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        435 ----KTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence                8999999999999875 57788889999965    7899999999999987543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.13  E-value=0.25  Score=48.82  Aligned_cols=95  Identities=12%  Similarity=-0.073  Sum_probs=74.5

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC----C-
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG----H-  206 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G----~-  206 (408)
                      +..+...+|.++. ..+++.+|...++++.+..  ++.+.+.||.+|.. .|      ++++|..+|+++....    . 
T Consensus       113 ~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g------~~~eA~~~l~~~l~~~~~~~~~  184 (355)
T cd05804         113 YWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QG------RFKEGIAFMESWRDTWDCSSML  184 (355)
T ss_pred             cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------CHHHHHHHHHhhhhccCCCcch
Confidence            3456666777777 6789999999999998774  67788999999865 55      8899999999998752    1 


Q ss_pred             -HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 -IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 -~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       ...++.+|.+|..    ..+.++|+.+|.++...
T Consensus       185 ~~~~~~~la~~~~~----~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         185 RGHNWWHLALFYLE----RGDYEAALAIYDTHIAP  215 (355)
T ss_pred             hHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcc
Confidence             2345678888865    68999999999998543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=95.01  E-value=0.054  Score=35.94  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchH
Q 015393           61 LPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLV  102 (408)
Q Consensus        61 lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~  102 (408)
                      ||+|++..|+..+     ++.|+.++..+|+.|+.......+
T Consensus         1 lP~~ll~~I~~~l-----~~~d~~~~~~vc~~~~~~~~~~~~   37 (41)
T smart00256        1 LPDEILEEILSKL-----PPKDLLRLRKVSRRWRSLIDSHDF   37 (41)
T ss_pred             CCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcChhh
Confidence            7999999999887     467999999999999998766544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.01  E-value=0.87  Score=46.47  Aligned_cols=118  Identities=11%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             hhhcCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-c-HHHHH-HHHHHHHcCCCCCCCc
Q 015393          113 IKANNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-H-AQALY-SLAVIQFNGSGGSKND  188 (408)
Q Consensus       113 ~~~~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~-~~A~~-~Lg~~y~~G~Gv~~~~  188 (408)
                      +..++| ++|.+.+.++.+.. ++...|.++...-...++++.|.+||++|++.. + ..+.. ..+.++.. .|     
T Consensus        95 ~~eGd~-~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g-----  167 (398)
T PRK10747         95 LAEGDY-QQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RN-----  167 (398)
T ss_pred             HhCCCH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CC-----
Confidence            444555 58889998888865 556666665555357899999999999999852 2 22332 33666654 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                       ++++|...+++..+.  .++.+...++.+|..    .+|.+++...+.+....+.
T Consensus       168 -~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        168 -ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCC
Confidence             889999999999886  689999999999966    5789999988888776543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.98  E-value=0.23  Score=36.88  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+++++.+..  +..+.+.+|.+|. ..+++++|+++|+++....  +..+.+.+|.+|.. .|      +..+
T Consensus        15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~   86 (100)
T cd00189          15 DYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LG------KYEE   86 (100)
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HH------hHHH
Confidence            3567888888877654  5578999999998 5688999999999988754  55688899988864 23      7889


Q ss_pred             HHHHHHHHHhC
Q 015393          194 GVALCARAAFL  204 (408)
Q Consensus       194 A~~~~~kAA~~  204 (408)
                      |..++.++.+.
T Consensus        87 a~~~~~~~~~~   97 (100)
T cd00189          87 ALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHcc
Confidence            99999887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.97  E-value=0.39  Score=46.41  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCC
Q 015393          117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ...++|+..|+.....  .+   +.|.|.||.+|+ ..+++++|+.+|++....     -.++|++.||.+|.. .|   
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g---  231 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG---  231 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC---
Confidence            3456777778766653  33   579999999998 799999999999999854     368899999999964 34   


Q ss_pred             CccCHHHHHHHHHHHHhC
Q 015393          187 NDKDLRAGVALCARAAFL  204 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~  204 (408)
                         +..+|...|++..+.
T Consensus       232 ---~~~~A~~~~~~vi~~  246 (263)
T PRK10803        232 ---DTAKAKAVYQQVIKK  246 (263)
T ss_pred             ---CHHHHHHHHHHHHHH
Confidence               889999999988875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.91  E-value=0.11  Score=52.55  Aligned_cols=101  Identities=17%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             HHHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHHH----HhcCc----HHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          127 KLCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAKA----AISSH----AQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       127 ~~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kA----A~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      +.|-+-|+.    .|.-+||..|. ..++++.|+++|+++    .+.|+    +..+|.||..|.-+.       ++.+|
T Consensus       223 ~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~-------e~~kA  294 (639)
T KOG1130|consen  223 EIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK-------EVQKA  294 (639)
T ss_pred             HHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH-------HHHHH
Confidence            345566665    46778999988 588999999999875    55664    567899999996543       78899


Q ss_pred             HHHHHHHH----h----CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          195 VALCARAA----F----LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       195 ~~~~~kAA----~----~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +.|+.+-.    +    -|...|+|.||..|..    -.+..+|++|.+++..
T Consensus       295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a----lg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNA----LGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----hhhHHHHHHHHHHHHH
Confidence            99988743    2    3788899999999955    3466778887777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=94.64  E-value=2.3  Score=42.23  Aligned_cols=111  Identities=19%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhHHHHhh------ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          120 ESAHRFLKLCADAGNVEACYTLGMIRFY------CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~------~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ++|+..-++-+..|.-.=.+.++.+|..      ...|.++|..|+.||.+.  ..+.|-..||.++.. .|      |+
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g------~y  230 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KG------DY  230 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc------ch
Confidence            5677666666667766666666666651      468899999999999766  488899999999963 56      89


Q ss_pred             HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++|++-++...+++.   ++..-.|-.+|..    -.+.++++.|+.++.+.-
T Consensus       231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcc
Confidence            999999999999864   4466677788865    567889999999998753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.64  E-value=0.86  Score=51.05  Aligned_cols=115  Identities=5%  Similarity=-0.072  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHh--HHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTL--GMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~L--G~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+++++.+..+....-.+  |.+|. ..+++.+|+++|+++.+.  +++++++.|+..|... +      ..+
T Consensus        82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-~------q~~  153 (822)
T PRK14574         82 GRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-G------RGG  153 (822)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-C------CHH
Confidence            4467999999999976555555555  66887 689999999999999887  4788888887777543 3      678


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +|++.++++....- ...+.++..|... + ..+..+|+..|+++.+..-
T Consensus       154 eAl~~l~~l~~~dp-~~~~~l~layL~~-~-~~~~~~AL~~~ekll~~~P  200 (822)
T PRK14574        154 VVLKQATELAERDP-TVQNYMTLSYLNR-A-TDRNYDALQASSEAVRLAP  200 (822)
T ss_pred             HHHHHHHHhcccCc-chHHHHHHHHHHH-h-cchHHHHHHHHHHHHHhCC
Confidence            99999999987622 2222355555442 3 3444459999999999743

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.58  E-value=0.29  Score=54.74  Aligned_cols=92  Identities=11%  Similarity=-0.006  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      .++|+.+|+++.+.  +++++.+.|+++|. ..+..++|++.++++... ++...+.++..|... +. .   +..+|++
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~-~~-~---~~~~AL~  190 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAER-DPTVQNYMTLSYLNR-AT-D---RNYDALQ  190 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHH-hc-c---hHHHHHH
Confidence            34666666665543  45556655545544 345666666666665544 222332344444331 11 1   2333666


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHH
Q 015393          197 LCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      .|+++.+.  ++.+..+.+...+
T Consensus       191 ~~ekll~~~P~n~e~~~~~~~~l  213 (822)
T PRK14574        191 ASSEAVRLAPTSEEVLKNHLEIL  213 (822)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Confidence            66666654  3344444443333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.47  E-value=0.24  Score=54.16  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=64.8

Q ss_pred             ccCCHHHHHHHHHHHHhcC---------cH------------HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh---
Q 015393          148 CLQNRGSGASLMAKAAISS---------HA------------QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF---  203 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~G---------~~------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~---  203 (408)
                      ...|.+.|++||+|+-..-         ++            +.+|...--|..-.|      +++.|+.+|.+|-+   
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G------emdaAl~~Y~~A~D~fs  943 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG------EMDAALSFYSSAKDYFS  943 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc------chHHHHHHHHHhhhhhh
Confidence            4589999999999984221         22            234444445556566      78888888887733   


Q ss_pred             --------------------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          204 --------------------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       204 --------------------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                                          .|+--|+|.||.+|++    ..|+.+|+.+|.+|-.-.++.-
T Consensus       944 ~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen  944 MVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred             heeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHH
Confidence                                5888999999999987    6789999999999986655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.46  E-value=0.92  Score=38.51  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHcCC-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--C---cHHHHHHHHHHHHcCCCCCC
Q 015393          117 NWSESAHRFLKLCADAGN-----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--S---HAQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G---~~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ...++|+.+|+++.+.|-     ..+...||..|. ..+.+++|+.+++++...  +   +....+.++..+.+ .|   
T Consensus        15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g---   89 (120)
T PF12688_consen   15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG---   89 (120)
T ss_pred             CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC---
Confidence            347899999999999873     347778888887 789999999999999876  2   55667777777654 34   


Q ss_pred             CccCHHHHHHHHHHHHh
Q 015393          187 NDKDLRAGVALCARAAF  203 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~  203 (408)
                         ..++|+.|+..+..
T Consensus        90 ---r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 ---RPKEALEWLLEALA  103 (120)
T ss_pred             ---CHHHHHHHHHHHHH
Confidence               67799999988765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=94.44  E-value=0.36  Score=54.08  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             hcCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhc-----------------cCCHHHHHHHHHH-HHhcC-cHHHHHH
Q 015393          115 ANNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYC-----------------LQNRGSGASLMAK-AAISS-HAQALYS  173 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~-----------------~~d~~~A~~~~~k-AA~~G-~~~A~~~  173 (408)
                      ..+..+++....+.+.+  .+.+.++|.+|.+|+.-                 ..+. .+++||.. -.+.+ +..|++.
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~  121 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRT  121 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHH
Confidence            34456777777775544  46778999999988721                 1122 44555443 23333 4469999


Q ss_pred             HHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          174 LAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       174 Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ||.+|.. .|      +.++++..|+++.+.  .|+.++.+||..|..    . |+++|..++.+|...
T Consensus       122 LA~~Ydk-~g------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        122 LAEAYAK-LN------ENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHH-cC------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH
Confidence            9999964 34      677999999999987  689999999999976    3 999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.42  E-value=0.99  Score=43.17  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=88.4

Q ss_pred             hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .......|+..+++++..  .|.++...||.+|. ..++.+.|..-|.+|.+.  +.+....|||++|.- .|      |
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~g------d  183 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RG------D  183 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cC------C
Confidence            344568899999999875  58899999999998 679999999999999876  689999999999853 34      8


Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393          191 LRAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLV  235 (408)
Q Consensus       191 ~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~  235 (408)
                      ++.|..++..|...+  +...-.+|+...    |--.|+.+|...-.
T Consensus       184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~----~~~g~~~~A~~i~~  226 (257)
T COG5010         184 LEDAETLLLPAYLSPAADSRVRQNLALVV----GLQGDFREAEDIAV  226 (257)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHH----hhcCChHHHHhhcc
Confidence            999999999999875  567777888877    55667766655433

>PRK11906 transcriptional regulator; Provisional

Probab=94.37  E-value=0.31  Score=50.29  Aligned_cols=107  Identities=10%  Similarity=0.038  Sum_probs=81.9

Q ss_pred             HHHHhHHHHh--hccCCHHHHHHHHHHHH---hc--CcHHHHHHHHHHHHcC--CCCCCCccCHHHHHHHHHHHHhC--C
Q 015393          137 ACYTLGMIRF--YCLQNRGSGASLMAKAA---IS--SHAQALYSLAVIQFNG--SGGSKNDKDLRAGVALCARAAFL--G  205 (408)
Q Consensus       137 A~~~LG~~y~--~~~~d~~~A~~~~~kAA---~~--G~~~A~~~Lg~~y~~G--~Gv~~~~~d~~kA~~~~~kAA~~--G  205 (408)
                      ..|..|...+  +.+.+.+.|+.+|.+|.   +.  +++.|+-.|+.+|..+  .|....+.+..+|.++-++|.+.  +
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            3377777665  35577889999999999   43  4788999999988655  22222345889999999999987  5


Q ss_pred             CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHh
Q 015393          206 HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLS  247 (408)
Q Consensus       206 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~  247 (408)
                      |+.|.+.+|.++    +...+...|..||++|.....-.|..
T Consensus       337 Da~a~~~~g~~~----~~~~~~~~a~~~f~rA~~L~Pn~A~~  374 (458)
T PRK11906        337 DGKILAIMGLIT----GLSGQAKVSHILFEQAKIHSTDIASL  374 (458)
T ss_pred             CHHHHHHHHHHH----HhhcchhhHHHHHHHHhhcCCccHHH
Confidence            888999999977    34667999999999999987655533

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.10  E-value=0.11  Score=35.64  Aligned_cols=40  Identities=20%  Similarity=0.137  Sum_probs=23.5

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV  176 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~  176 (408)
                      ++.+.||..|. ..+++++|+++|+++.+.  +++++.+.||.
T Consensus         2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45556666665 456666666666666554  35666665553

>PRK15331 chaperone protein SicA; Provisional

Probab=94.02  E-value=0.48  Score=42.45  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      +.|.+|.-++ ..+++++|...|+--+..+  +++=.+.||.++..       .+++++|+..|..|+..  .++...|.
T Consensus        39 ~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-------~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         39 GLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-------KKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcccCCCCccch
Confidence            3343443333 4566666666666655543  33334444445432       12666777777766654  56666777


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.||..    -+|..+|+..|..|.++
T Consensus       111 agqC~l~----l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        111 TGQCQLL----MRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHH----hCCHHHHHHHHHHHHhC
Confidence            7777754    56667777777766664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.98  E-value=1.3  Score=48.22  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAA--ISSHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA--~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ..|.+++...+..|...  =.+..+|..|.++. +.+..++|.+.|.-|.  +-+|+.++..||.+|..+ | .+   .+
T Consensus       663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G-~~---~l  736 (799)
T KOG4162|consen  663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-G-SP---RL  736 (799)
T ss_pred             cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-C-Cc---ch
Confidence            34556666555545433  34567788888888 7899999999998865  457999999999999875 3 22   34


Q ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ....-++.-|.+.+  +++|.|.||.++..    ..|..+|.+.|.-|.....
T Consensus       737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhcc
Confidence            45555888998875  89999999999976    6788899999998887544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.97  E-value=0.32  Score=47.99  Aligned_cols=185  Identities=13%  Similarity=0.084  Sum_probs=120.4

Q ss_pred             CCCCCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh-------hcc----hhHHHhh------
Q 015393           52 AGKSDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS-------KAS----KKTFAIK------  114 (408)
Q Consensus        52 ~~~~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~-------~a~----~~~~~~~------  114 (408)
                      +|..-.++.-||.-+. .|..+..-  +|..+-.-+..-+-|+.-|+....+.       ...    .+.+++.      
T Consensus        41 ~GlNfLLs~Q~dKAvd-lF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          41 KGLNFLLSNQPDKAVD-LFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             hHHHHHhhcCcchHHH-HHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            4444456666665433 33334433  55555444444556666654432211       110    1112211      


Q ss_pred             -hcCCHHHHHHHHHHHHHcCC--HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          115 -ANNWSESAHRFLKLCADAGN--VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       115 -~~~~~~~A~~~l~~aAe~G~--~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                       .....+.|...|....+.|.  ..|.-.|-.+|. ..++.++|++--++-...|.-.-...++.+|..=---.....|.
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence             12336788888888888664  468888888888 78999999999998888876666666666662210000012388


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHH
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAA  244 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~  244 (408)
                      .+|+.|+.||.+.  ..+.|-..||.++..    ..|+++|++-|+...++....
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhChHH
Confidence            9999999999875  689999999999975    789999999999999987644

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.86  E-value=0.79  Score=50.51  Aligned_cols=114  Identities=18%  Similarity=0.070  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      +..+.|...+...+.+  -++.|++.||.+|. ..+|.++++..+..||..  ++.+=+..|+.+... .|      ++.
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~------~i~  224 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LG------NIN  224 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cc------cHH
Confidence            4567888888866654  58889999999998 677999999988888876  477777788877754 34      788


Q ss_pred             HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          193 AGVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       193 kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +|.-+|.+|....  +..-.++-+.+|+.    ..+..+|..-|++....-.
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCC
Confidence            9999999998874  55677777888865    5688899999999888766

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=0.64  Score=48.20  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ..+..++...+|.+|.+.  .|++-+|.-|+|++ ..+++++|+.=|++|....  |+-++.+|+...+.- +      -
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~------k  443 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-H------K  443 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-H------H
Confidence            345567778888888765  48888999999888 7788899999999988775  666777777665432 1      4


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA  243 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~  243 (408)
                      +..++..|+.+-..  ..++.+...|.++.+    .++..+|.+.|.+|.+....
T Consensus       444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccc
Confidence            67888888888776  667778888888866    78999999999999987654

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=93.59  E-value=0.032  Score=38.79  Aligned_cols=41  Identities=27%  Similarity=0.462  Sum_probs=32.5

Q ss_pred             cCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchH
Q 015393           57 LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLV  102 (408)
Q Consensus        57 ~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~  102 (408)
                      .|.+||+|++..|+..+     ++.|+..+..+|+.|+........
T Consensus         2 ~~~~LP~~il~~Il~~l-----~~~~~~~l~~vsk~~~~~~~~~~~   42 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYL-----DPKDLLRLSLVSKRWRSLVDSPRL   42 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS------HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred             CHHHCCHHHHHHHHHHC-----cHHHHHHHHHHhhHHHHHHcCCCc
Confidence            46789999999999988     567999999999999998766543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=93.56  E-value=0.025  Score=58.51  Aligned_cols=45  Identities=27%  Similarity=0.674  Sum_probs=34.2

Q ss_pred             CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393          326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW  380 (408)
Q Consensus       326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~  380 (408)
                      ...-|.  .|.+...     ..|  |-...|||.+||+.||+ .|+..|.....-
T Consensus       526 kKQWC~--nC~~EAi-----y~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~~  570 (588)
T KOG3612|consen  526 KKQWCY--NCLDEAI-----YHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKTN  570 (588)
T ss_pred             HHHHHH--hhhHHHH-----HHh--hccccccCcchhhccch-hHhhhhcccCCC
Confidence            456788  4554443     334  77899999999999999 699999976644

>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]

Probab=93.48  E-value=0.033  Score=55.31  Aligned_cols=48  Identities=42%  Similarity=0.903  Sum_probs=40.0

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAER  379 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~  379 (408)
                      .+...|.-|+|.  +.     ..|+.|+..+|||+.+|..||+.+|+..|.....
T Consensus       134 ~~~~~~~~~~~~--a~-----~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~  181 (362)
T KOG2061|consen  134 DGADLCGSCGCS--AP-----AACSPCKAAAYCSKKHQSLDWPKGHKDACAQPST  181 (362)
T ss_pred             cccchhccCccc--Cc-----ccccccchhhhcCchhhcccccccccccccCccc
Confidence            345789977776  33     5699999999999999999999889999986553

>TIGR00540 hemY_coli hemY protein

Probab=93.44  E-value=1.6  Score=44.58  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=39.7

Q ss_pred             CCHHHHHHHHHHHHhc--CcH--HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHH--HHh-CCCHHHHHHHHHHHHcCCC
Q 015393          150 QNRGSGASLMAKAAIS--SHA--QALYSLAVIQFNGSGGSKNDKDLRAGVALCAR--AAF-LGHIDALRELGHCLQDGYG  222 (408)
Q Consensus       150 ~d~~~A~~~~~kAA~~--G~~--~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~k--AA~-~G~~~A~~~Lg~~y~~G~G  222 (408)
                      +|..++.+.++++.+.  +++  .....||.++.. .|      ++.+|.++|++  +.+ .-++.....||.++..   
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~------~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~---  382 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HG------EFIEAADAFKNVAACKEQLDANDLAMAADAFDQ---  382 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cc------cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH---
Confidence            4555555555555544  445  444455655532 22      55566666663  322 2333344455665544   


Q ss_pred             ccccHHHHHHHHHHHH
Q 015393          223 VRQNIAEGRRFLVQAN  238 (408)
Q Consensus       223 v~~d~~~A~~w~~kAA  238 (408)
                       ..+.++|.++|+++.
T Consensus       383 -~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       383 -AGDKAEAAAMRQDSL  397 (409)
T ss_pred             -cCCHHHHHHHHHHHH
Confidence             455556666666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.42  E-value=0.43  Score=49.42  Aligned_cols=83  Identities=17%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 015393          148 CLQNRGSGASLMAKAAISSHA--------QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCL  217 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~G~~--------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y  217 (408)
                      .++++.+|++.|.+|.+.-..        .-+..-|.+..+=      .+|+..|.++++||.+..  .-.|.-.||.+-
T Consensus       474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~  547 (606)
T KOG0547|consen  474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW------KEDINQAENLLRKAIELDPKCEQAYETLAQFE  547 (606)
T ss_pred             hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            358899999999999988644        2233334444331      239999999999999985  456888899888


Q ss_pred             HcCCCccccHHHHHHHHHHHHHc
Q 015393          218 QDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       218 ~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+    ..++.+|+++|++++..
T Consensus       548 lQ----~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  548 LQ----RGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HH----HhhHHHHHHHHHHHHHH
Confidence            65    67999999999999974

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=93.30  E-value=1.3  Score=46.81  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=92.6

Q ss_pred             HhHHHHHHHHHHHHHhh------cCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHHc-----C--C---HHHHHHhHHH
Q 015393           81 SDFVNVLITCKRMNGLA------LNSLVLSKASKKTFAIKANNWSESAHRFLKLCADA-----G--N---VEACYTLGMI  144 (408)
Q Consensus        81 ~d~~~a~l~ck~~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe~-----G--~---~~A~~~LG~~  144 (408)
                      .+|-.+...|++-.+..      .+..+-...-.-++......-.++|+.+|++|..-     |  |   +..+.+|+.+
T Consensus       213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l  292 (508)
T KOG1840|consen  213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL  292 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            46666666666544431      22333222222223333344467788888877642     2  3   3477888988


Q ss_pred             HhhccCCHHHHHHHHHHHHhc-------Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-------CCC-
Q 015393          145 RFYCLQNRGSGASLMAKAAIS-------SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-------LGH-  206 (408)
Q Consensus       145 y~~~~~d~~~A~~~~~kAA~~-------G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-------~G~-  206 (408)
                      |. ..+.+.+|..++++|.+-       .+   +..+-+++.++..-.       .+++|..+|+++..       ..+ 
T Consensus       293 y~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  293 YY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-------EYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             Hh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHHHHHhhccccch
Confidence            86 788999999998888642       22   234456666664422       56677777777754       233 


Q ss_pred             --HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 --IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 --~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        +.-..+||.+|+.    ...+.+|.++|++|...
T Consensus       365 ~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  365 NLAKIYANLAELYLK----MGKYKEAEELYKKAIQI  396 (508)
T ss_pred             HHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHH
Confidence              2345679999976    67889999999999964

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.27  E-value=0.88  Score=45.12  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             cCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcc
Q 015393          149 LQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--HIDALRELGHCLQDGYGVR  224 (408)
Q Consensus       149 ~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~  224 (408)
                      .++.+.|+++|+.++++.  |++|.--+|.-|+.+.       +++-|+.||++-...|  +++-..+||.|.+.+    
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~-------~PE~AlryYRRiLqmG~~speLf~NigLCC~ya----  371 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN-------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYA----  371 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC-------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh----
Confidence            368889999999998774  7777777777776543       6789999999999987  688889999998874    


Q ss_pred             ccHHHHHHHHHHHHH
Q 015393          225 QNIAEGRRFLVQANA  239 (408)
Q Consensus       225 ~d~~~A~~w~~kAA~  239 (408)
                      +.+..++--|++|..
T Consensus       372 qQ~D~~L~sf~RAls  386 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALS  386 (478)
T ss_pred             cchhhhHHHHHHHHh
Confidence            344455556666543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.25  E-value=0.59  Score=49.11  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      ..+|.+||.||.-..  ...|+..+|..|. .++..++|+..|..|+..  |...-...||+=|.. .+      +++-|
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~------n~kLA  399 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TN------NLKLA  399 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hc------cHHHH
Confidence            457777777776544  5567777777766 677777888888888765  666667777777742 12      77788


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      -++|.+|..-  .+|--..+||.++++    ...+.+|..||+.+.
T Consensus       400 e~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHH
Confidence            8888888654  677888888888865    577888899998887

>TIGR00540 hemY_coli hemY protein

Probab=93.24  E-value=3.9  Score=41.80  Aligned_cols=113  Identities=9%  Similarity=-0.030  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHcCCH--HHHHHhHHHHhhccCCHHHHHHHHHHHHhc-CcH--HHHHHHHHHHHcCCCCCCCccCH
Q 015393          117 NWSESAHRFLKLCADAGNV--EACYTLGMIRFYCLQNRGSGASLMAKAAIS-SHA--QALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~--~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-G~~--~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ...+.|.+.+.++++....  .+....|.++. ..+|++.|.+||+++.+. ++.  .....++.++.. .|      ++
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~------~~  169 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QN------EL  169 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CC------CH
Confidence            3457888888888886532  33444466655 679999999999999875 333  234445777754 33      78


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++|...+++..+.  .++.+...++.+|..    .+|.+++...+.+..+.+
T Consensus       170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcC
Confidence            8999999999887  688999999999976    789999999988888764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.03  E-value=0.19  Score=31.65  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS  165 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~  165 (408)
                      +++++.||.+|+ ..+++++|+++|++|.+.
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Confidence            356777777777 577777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=93.02  E-value=2.4  Score=44.89  Aligned_cols=118  Identities=13%  Similarity=0.050  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHHHHc-------CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA-------GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLA  175 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~-------G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg  175 (408)
                      .+-.++|..+|+++-+.       -|   +.-..+||.+|+ -.+.+++|.++|++|...          +......+||
T Consensus       338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la  416 (508)
T KOG1840|consen  338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA  416 (508)
T ss_pred             hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence            34456777777665442       23   345567888888 678999999999999854          2355778889


Q ss_pred             HHHHcCCCCCCCccCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          176 VIQFNGSGGSKNDKDLRAGVALCARAAFLGH---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      ..|..+.......+=+.++..|+ +++--++   ...+.+|+..|..    -.++++|+++..++..
T Consensus       417 ~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~----~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  417 EAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRA----QGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHH----cccHHHHHHHHHHHHH
Confidence            88877654222223455667777 6666555   4578899999965    5688999988887763

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=0.4  Score=50.33  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      ..+..+|.+|..|+ ..+..++|.+||.||....  +.+|+..+|..|. +.|      .-++|+.-|..|+..  |...
T Consensus       310 ~~a~sW~aVg~YYl-~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~------EhdQAmaaY~tAarl~~G~hl  381 (611)
T KOG1173|consen  310 SKALSWFAVGCYYL-MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEG------EHDQAMAAYFTAARLMPGCHL  381 (611)
T ss_pred             CCCcchhhHHHHHH-HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcc------hHHHHHHHHHHHHHhccCCcc
Confidence            34456666777777 6689999999999998664  7889999999885 333      668999999999986  8888


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      -...||+-|    +...|.+.|.++|.+|-..
T Consensus       382 P~LYlgmey----~~t~n~kLAe~Ff~~A~ai  409 (611)
T KOG1173|consen  382 PSLYLGMEY----MRTNNLKLAEKFFKQALAI  409 (611)
T ss_pred             hHHHHHHHH----HHhccHHHHHHHHHHHHhc
Confidence            899999999    4578999999999999864

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=92.88  E-value=0.71  Score=34.44  Aligned_cols=56  Identities=14%  Similarity=0.092  Sum_probs=36.7

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393          142 GMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG  205 (408)
Q Consensus       142 G~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G  205 (408)
                      ..+|+ ..+++++|+++++++...  .++.+.+.+|.+|.. .|      ++.+|++.|+++.+.+
T Consensus         2 ~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g------~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LG------RYEEALEDLERALELS   59 (73)
T ss_pred             HHHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hc------cHHHHHHHHHHHHHHC
Confidence            34454 467777777777777665  366677777777754 23      6677777777777653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.81  E-value=0.87  Score=49.98  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             HHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHH----------hcCcHHHHHHHHHH-----------HHcCCCCCCC
Q 015393          129 CADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAA----------ISSHAQALYSLAVI-----------QFNGSGGSKN  187 (408)
Q Consensus       129 aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA----------~~G~~~A~~~Lg~~-----------y~~G~Gv~~~  187 (408)
                      |-+.||..|+|.||.+|. ..++..+|+.+|.+|-          +++.-+-+.+|+.+           |+...|+   
T Consensus       961 A~esgd~AAcYhlaR~YE-n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--- 1036 (1416)
T KOG3617|consen  961 AEESGDKAACYHLARMYE-NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--- 1036 (1416)
T ss_pred             HHhcccHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---
Confidence            446799999999999998 6888999999999884          33444445555543           2233333   


Q ss_pred             ccCHHHHHHHHHHH
Q 015393          188 DKDLRAGVALCARA  201 (408)
Q Consensus       188 ~~d~~kA~~~~~kA  201 (408)
                        +..+|+.+|.||
T Consensus      1037 --~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1037 --YAHKAVMLYHKA 1048 (1416)
T ss_pred             --hhhHHHHHHHhh
Confidence              667888888877

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.80  E-value=3.2  Score=42.12  Aligned_cols=132  Identities=14%  Similarity=0.079  Sum_probs=83.4

Q ss_pred             hhHHHhhh---cCCHHHHHHHHHHHH---HcCCHHHHHHhHHHHhh--------ccCCHHHHHHHHHHHHhcC-cHHHHH
Q 015393          108 KKTFAIKA---NNWSESAHRFLKLCA---DAGNVEACYTLGMIRFY--------CLQNRGSGASLMAKAAISS-HAQALY  172 (408)
Q Consensus       108 ~~~~~~~~---~~~~~~A~~~l~~aA---e~G~~~A~~~LG~~y~~--------~~~d~~~A~~~~~kAA~~G-~~~A~~  172 (408)
                      ..+|++..   ..+.++|+.++....   +.-+++.+..+|.+|-.        ......+|++||.+|-+.. +...=.
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI  263 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI  263 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH
Confidence            45677776   667899999988733   34578999999999971        1245779999999998775 333444


Q ss_pred             HHHHHH-HcCCCCCCCccCHHH-HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          173 SLAVIQ-FNGSGGSKNDKDLRA-GVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       173 ~Lg~~y-~~G~Gv~~~~~d~~k-A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |++.++ ..|..... ...+.+ ++.+-....+.|   ...-++.+|..+.-... ..|.++|..|++++....
T Consensus       264 N~AtLL~~~g~~~~~-~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  264 NAATLLMLAGHDFET-SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHHcCCcccc-hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcC
Confidence            666655 34432211 111112 223323333444   34456666666655433 579999999999998763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=92.77  E-value=3.6  Score=45.53  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             HhHHHHHHHHHHHHHhh-cCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHH
Q 015393           81 SDFVNVLITCKRMNGLA-LNSLVLSKASKKTFAIKANNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGAS  157 (408)
Q Consensus        81 ~d~~~a~l~ck~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~  157 (408)
                      .|+..+...|+..-... .....+..  ...+ .....+.+++..++-.||-  .++.+-+..++.+.. ..+++.+|..
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~t--L~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~  228 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYT--LGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARY  228 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHH--HHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHH
Confidence            46666666666543322 11111111  1111 1223356778777777765  468888888888766 5678999999


Q ss_pred             HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC-HHH------HHHHHHHHHcCCCccccHH
Q 015393          158 LMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH-IDA------LRELGHCLQDGYGVRQNIA  228 (408)
Q Consensus       158 ~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~-~~A------~~~Lg~~y~~G~Gv~~d~~  228 (408)
                      +|.+|....  +.+-.|.-+.+|.. .|      +..+|++-|.+....-. ++-      .+..+..|    -+..+.+
T Consensus       229 cy~rAI~~~p~n~~~~~ers~L~~~-~G------~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~----~~~~~~e  297 (895)
T KOG2076|consen  229 CYSRAIQANPSNWELIYERSSLYQK-TG------DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF----ITHNERE  297 (895)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHH-hC------hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH----HHhhHHH
Confidence            999998875  45566666777743 45      77789999999888744 222      22223333    2456667


Q ss_pred             HHHHHHHHHHHcCC
Q 015393          229 EGRRFLVQANAREL  242 (408)
Q Consensus       229 ~A~~w~~kAA~~G~  242 (408)
                      .|++.++.|...+.
T Consensus       298 ~a~~~le~~~s~~~  311 (895)
T KOG2076|consen  298 RAAKALEGALSKEK  311 (895)
T ss_pred             HHHHHHHHHHhhcc
Confidence            77777777777544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=92.68  E-value=0.38  Score=35.42  Aligned_cols=49  Identities=18%  Similarity=0.128  Sum_probs=27.2

Q ss_pred             cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          149 LQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       149 ~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      .+++++|+++|+++...  ++.++.+.||.+|... |      ++++|..++++....
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g------~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-G------QYDEAEELLERLLKQ   54 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-------HHHHHHHHHCCHGG
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHHH
Confidence            35556666666665544  3566666666666542 3      555666666665544

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=92.65  E-value=3.3  Score=42.23  Aligned_cols=77  Identities=9%  Similarity=0.020  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccc
Q 015393          150 QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQN  226 (408)
Q Consensus       150 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d  226 (408)
                      ++..+++..+++..+.  +++...+.+|.++... +      ++.+|.++|+++.+.. +...+..|+.++..    ..+
T Consensus       308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~------~~~~A~~~le~al~~~P~~~~~~~La~~~~~----~g~  376 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-G------EWQEASLAFRAALKQRPDAYDYAWLADALDR----LHK  376 (398)
T ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCC
Confidence            3444444444443333  2444444444444321 1      4445555555554442 22233444544433    334


Q ss_pred             HHHHHHHHHHH
Q 015393          227 IAEGRRFLVQA  237 (408)
Q Consensus       227 ~~~A~~w~~kA  237 (408)
                      .++|..+|+++
T Consensus       377 ~~~A~~~~~~~  387 (398)
T PRK10747        377 PEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHH
Confidence            44555555444

>PRK15331 chaperone protein SicA; Provisional

Probab=92.63  E-value=3.7  Score=36.79  Aligned_cols=80  Identities=11%  Similarity=-0.001  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|..+|+-.+  +..|++=.+.||.+|. ..+++++|+..|..|+..  .+|...|.+|.+|+. .|      +..+
T Consensus        52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~------~~~~  123 (165)
T PRK15331         52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MR------KAAK  123 (165)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hC------CHHH
Confidence            3567777777554  4567776777777776 789999999999998865  689999999999974 34      8889


Q ss_pred             HHHHHHHHHhCC
Q 015393          194 GVALCARAAFLG  205 (408)
Q Consensus       194 A~~~~~kAA~~G  205 (408)
                      |...|..+.+.-
T Consensus       124 A~~~f~~a~~~~  135 (165)
T PRK15331        124 ARQCFELVNERT  135 (165)
T ss_pred             HHHHHHHHHhCc
Confidence            999999998853

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.56  E-value=0.68  Score=43.86  Aligned_cols=99  Identities=21%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C---cHH-HHHHHHHHHHcCCCCCCCc
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S---HAQ-ALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G---~~~-A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      +-.++|..+|.+|+.      +|.|       .++...|=.-|.+||+.    |   +.. .+...+.+|..+       
T Consensus        28 ~k~eeAadl~~~Aan------~ykl-------aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-------   87 (288)
T KOG1586|consen   28 NKYEEAAELYERAAN------MYKL-------AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-------   87 (288)
T ss_pred             cchHHHHHHHHHHHH------HHHH-------HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-------
Confidence            346778888887754      2222       34444444444444432    2   222 233444555432       


Q ss_pred             cCHHHHHHHHHHHHhC----CCHH--H--HHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          189 KDLRAGVALCARAAFL----GHID--A--LRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~----G~~~--A--~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       |+.+|+..+++|.+.    |.-.  |  ...||.+|++   -.+|+++|+..|++|++
T Consensus        88 -~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae  142 (288)
T KOG1586|consen   88 -DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAE  142 (288)
T ss_pred             -ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHH
Confidence             777899999988773    4221  1  3467888865   23899999999999998

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.55  E-value=1.5  Score=42.26  Aligned_cols=98  Identities=20%  Similarity=0.134  Sum_probs=77.8

Q ss_pred             HHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-----CCH
Q 015393          138 CYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-----GHI  207 (408)
Q Consensus       138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-----G~~  207 (408)
                      .|+.+.-++ -.+++..|..-|..=....     -+.|+|+||..|+. .|      |+..|...|...+..     --+
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg------~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QG------DYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cc------cchHHHHHHHHHHHhCCCCCCCh
Confidence            677776666 5677888888888877764     57899999999964 44      888999999999873     357


Q ss_pred             HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393          208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS  247 (408)
Q Consensus       208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~  247 (408)
                      ++++.||.+...    .++.++|...|++...+  |...|..
T Consensus       216 dallKlg~~~~~----l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         216 DALLKLGVSLGR----LGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            899999999954    88999999999999876  4444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.51  E-value=0.28  Score=33.51  Aligned_cols=41  Identities=27%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393          168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH  215 (408)
Q Consensus       168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~  215 (408)
                      |++++.||..|.. .|      ++++|.++|+++.+.  +++.+.+.||.
T Consensus         1 p~~~~~la~~~~~-~G------~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRR-LG------QPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4678999999965 55      899999999999987  78999998885

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.18  E-value=0.29  Score=31.06  Aligned_cols=30  Identities=27%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS  165 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~  165 (408)
                      +.+++++|.+|+ ..+++++|+..|++|.+.
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHH
Confidence            356778888877 677888888888887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=91.66  E-value=11  Score=39.18  Aligned_cols=114  Identities=16%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             HHHHHHHHH--HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLK--LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~--~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|...|.  .+...+|+..+-..+.+++ ..+..++|.+.+++|..+  +.+--.+++|..|..+.       ++.+|
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-------~~~ea  393 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG-------KPQEA  393 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-------ChHHH
Confidence            345555555  4566799999999999999 688899999999999877  35778899999998763       45588


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHc-CC------------CccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQD-GY------------GVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~------------Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +..+......  .++..+..|+..|.. |.            -...++++|+.++..|-++
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            8888887654  577788888887743 11            1244555666666665554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=91.62  E-value=1.6  Score=37.68  Aligned_cols=77  Identities=17%  Similarity=0.071  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHHcC-C----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          117 NWSESAHRFLKLCADAG-N----VEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G-~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ...++|...|+.+.+.. +    +.+.+.|+.+++ ..+++++|+..++...... .+.+...+|.+|.. .|      +
T Consensus        62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~-~g------~  133 (145)
T PF09976_consen   62 GDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQIPDEAFKALAAELLGDIYLA-QG------D  133 (145)
T ss_pred             CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH-CC------C
Confidence            45688999999888876 3    347888888888 7899999999997743332 45677889999965 45      8


Q ss_pred             HHHHHHHHHHH
Q 015393          191 LRAGVALCARA  201 (408)
Q Consensus       191 ~~kA~~~~~kA  201 (408)
                      .++|+..|++|
T Consensus       134 ~~~A~~~y~~A  144 (145)
T PF09976_consen  134 YDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHh
Confidence            89999999987

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=91.49  E-value=4.9  Score=39.52  Aligned_cols=114  Identities=18%  Similarity=0.033  Sum_probs=76.8

Q ss_pred             hhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHh--h-ccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCC
Q 015393          114 KANNWSESAHRFLKLCADA--GNVEACYTLGMIRF--Y-CLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       114 ~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~--~-~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      ......++|..+++++.+.  .+..+... +..++  + ..+....+.+.+.. ...   ++..+...+|.++.. .|  
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~-~G--  128 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE-AG--  128 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH-cC--
Confidence            3445577889999887765  45555543 33333  1 12333344444433 222   234566677777753 45  


Q ss_pred             CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          186 KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                          ++.+|...|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|.++.+.
T Consensus       129 ----~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         129 ----QYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDT  177 (355)
T ss_pred             ----CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhc
Confidence                889999999999986  567889999999976    67899999999998875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.46  E-value=3.3  Score=36.02  Aligned_cols=93  Identities=16%  Similarity=-0.010  Sum_probs=59.2

Q ss_pred             hhhcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc------HHHHHHHHHHHHcCCCC
Q 015393          113 IKANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH------AQALYSLAVIQFNGSGG  184 (408)
Q Consensus       113 ~~~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~------~~A~~~Lg~~y~~G~Gv  184 (408)
                      +.....-+.|++.|.++...  ..+.|+.|-+..|. .+++.++|++=+.+|.+.-.      -.|...-|.+|.- .| 
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g-  129 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LG-  129 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hC-
Confidence            33344456677777776654  36677777777766 56777777777777776532      2355556666643 33 


Q ss_pred             CCCccCHHHHHHHHHHHHhCCCHHHHHHH
Q 015393          185 SKNDKDLRAGVALCARAAFLGHIDALREL  213 (408)
Q Consensus       185 ~~~~~d~~kA~~~~~kAA~~G~~~A~~~L  213 (408)
                           |.++|..-|+.||+.|.+-|-..|
T Consensus       130 -----~dd~AR~DFe~AA~LGS~FAr~QL  153 (175)
T KOG4555|consen  130 -----NDDAARADFEAAAQLGSKFAREQL  153 (175)
T ss_pred             -----chHHHHHhHHHHHHhCCHHHHHHH
Confidence                 556777777777777777665554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.43  E-value=0.33  Score=31.70  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=18.1

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAA  163 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA  163 (408)
                      |+.+||.+|. ..+++++|+++|++|.
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            4567777777 5777888888887754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.26  E-value=0.25  Score=48.42  Aligned_cols=50  Identities=16%  Similarity=0.235  Sum_probs=44.0

Q ss_pred             cCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhc
Q 015393           57 LFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKA  106 (408)
Q Consensus        57 ~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a  106 (408)
                      .|..||||+|..||..+-++.-+..++.++.++|+.|..+.-++.++..+
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a  155 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA  155 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence            47889999999999999987778899999999999999999888776544

>PLN02789 farnesyltranstransferase

Probab=90.97  E-value=6.4  Score=39.13  Aligned_cols=113  Identities=10%  Similarity=-0.059  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.++.++.+.  .+..+.+..|.++.....++++++.++.+++..  .+..+.+..+.++.. .|. .   ...+
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~-~---~~~~  126 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGP-D---AANK  126 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCc-h---hhHH
Confidence            345566666655543  355666666666553223566677777766654  355566666655532 110 0   1245


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      ++.++.++.+.  .+..|.+..+.++..    -.+.++++.++.++.+
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Confidence            56666666654  456666666666654    2346666777766665

>PLN02789 farnesyltranstransferase

Probab=90.82  E-value=4.6  Score=40.18  Aligned_cols=114  Identities=10%  Similarity=-0.021  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC---CCCCCCccCHHH
Q 015393          121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG---SGGSKNDKDLRA  193 (408)
Q Consensus       121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G---~Gv~~~~~d~~k  193 (408)
                      +++.++.++.+.  .|..|.+..|.++. ..++++++++++.++.+.  .+..|.++.+.++...   .+.   ....+.
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~---~~~~e~  201 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL---EAMRDS  201 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc---cccHHH
Confidence            445555444432  35556666665554 334566666666666553  3556666666555432   111   113345


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHc-CCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQD-GYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .+.+..++...  .+..|.+.++.+|.. +.+. ....++...+.++..
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l-~~~~~~~~~~~~~~~  249 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEAL-VSDPEVSSVCLEVLS  249 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc-ccchhHHHHHHHhhc
Confidence            56666666544  455566666666644 1222 122335555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.26  E-value=0.45  Score=46.72  Aligned_cols=42  Identities=29%  Similarity=0.567  Sum_probs=36.9

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393           58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS  104 (408)
Q Consensus        58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~  104 (408)
                      |++|||+++.-||+.+.-     .++..++.+|++|+..+.+...+.
T Consensus        98 ~~slpDEill~IFs~L~k-----k~LL~~~~VC~Rfyr~~~de~lW~  139 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCK-----KELLKVSGVCKRFYRLASDESLWQ  139 (419)
T ss_pred             cccCCHHHHHHHHHhccH-----HHHHHHHHHHHHHhhcccccccee
Confidence            999999999999999865     599999999999999987765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=89.81  E-value=6.9  Score=40.14  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=81.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      -.+.|+.+|++..+. +|++.+.|+.+|. ...+..+|++++.++....  +.+.+...+..+... +      +++.|+
T Consensus       184 ~~~~ai~lle~L~~~-~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~------~~~lAL  254 (395)
T PF09295_consen  184 RYDEAIELLEKLRER-DPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-K------KYELAL  254 (395)
T ss_pred             cHHHHHHHHHHHHhc-CCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C------CHHHHH
Confidence            357899999876654 5889999999998 4567789999999999754  566666666666542 2      678999


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHH
Q 015393          196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFL  234 (408)
Q Consensus       196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~  234 (408)
                      ...++|.+.  .+....+.|+.+|..    ..|++.|+.-+
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaL  291 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQ----LGDFENALLAL  291 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHH
Confidence            999999987  678899999999965    66777775433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=89.52  E-value=5.2  Score=34.79  Aligned_cols=91  Identities=15%  Similarity=-0.023  Sum_probs=73.4

Q ss_pred             ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHc
Q 015393          148 CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH------IDALRELGHCLQD  219 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~------~~A~~~Lg~~y~~  219 (408)
                      ..++.+.|++.|.+|...  ..+.|+.|-+..|.- .|      +.++|++-+.+|.+.-.      -.|...-|.+|.-
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~------~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QG------DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cC------ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            458899999999999876  478888888888853 23      77899999999988622      2366777888854


Q ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          220 GYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       220 G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                          ..|.+.|+.=|+.||..|+..|...+
T Consensus       128 ----~g~dd~AR~DFe~AA~LGS~FAr~QL  153 (175)
T KOG4555|consen  128 ----LGNDDAARADFEAAAQLGSKFAREQL  153 (175)
T ss_pred             ----hCchHHHHHhHHHHHHhCCHHHHHHH
Confidence                67889999999999999999998874

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=89.31  E-value=2.3  Score=43.44  Aligned_cols=76  Identities=22%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             HHHHHHHH----HHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHH--HH--h----cCcHHHHHHHHHHHHcCCC
Q 015393          120 ESAHRFLK----LCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAK--AA--I----SSHAQALYSLAVIQFNGSG  183 (408)
Q Consensus       120 ~~A~~~l~----~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~k--AA--~----~G~~~A~~~Lg~~y~~G~G  183 (408)
                      +-|+++|+    .|.+.|+.    ..+|.||..|. ..+++.+|+.|+.+  |+  +    -|...|+|.||..|-. .|
T Consensus       252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a-lg  329 (639)
T KOG1130|consen  252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA-LG  329 (639)
T ss_pred             HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-hh
Confidence            34555554    56788864    57899999987 67899999999876  22  2    2678899999999943 55


Q ss_pred             CCCCccCHHHHHHHHHHHHh
Q 015393          184 GSKNDKDLRAGVALCARAAF  203 (408)
Q Consensus       184 v~~~~~d~~kA~~~~~kAA~  203 (408)
                            +..+|+.+.+++.+
T Consensus       330 ------~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  330 ------EHRKALYFAELHLR  343 (639)
T ss_pred             ------hHHHHHHHHHHHHH
Confidence                  56688887777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.29  E-value=2.9  Score=42.42  Aligned_cols=62  Identities=16%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       168 ~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ..+..||+.+|....       ++.+|+++..++.+.  +|+.|+|.=|.+|..    -.+++.|+..|++|.+.
T Consensus       257 ~~~~lNlA~c~lKl~-------~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  257 LACHLNLAACYLKLK-------EYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHHhhHHHHHHHhhh-------hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHh
Confidence            346779999996532       778999999999875  799999999999976    56899999999999875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.28  E-value=0.86  Score=28.54  Aligned_cols=30  Identities=20%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+.+.||.+|+.    .++.++|+++|++|.+.
T Consensus         1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            3567788888876    77888888888888763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.23  E-value=1.5  Score=32.20  Aligned_cols=57  Identities=16%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--HHHHHHHH
Q 015393          118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--AQALYSLA  175 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--~~A~~~Lg  175 (408)
                      ..++|+.+|+++.+  .+++++.+.|+.+|+ ..+++++|..++++......  +..+.-++
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            35789999998765  579999999999999 68999999999999877642  44444444

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=89.01  E-value=8.6  Score=36.58  Aligned_cols=100  Identities=12%  Similarity=-0.030  Sum_probs=68.2

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---  204 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---  204 (408)
                      ..+...|..|..++ ..+|+++|++.|++....  +.   ..|+++||..|.. .+      |+.+|+.+|++..+.   
T Consensus        30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~------~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NA------DLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHhCcC
Confidence            35566677777776 578999999999987765  22   3356889998875 23      888999999999885   


Q ss_pred             --CCHHHHHHHHHHHHc-CC----------CccccHH---HHHHHHHHHHHc
Q 015393          205 --GHIDALRELGHCLQD-GY----------GVRQNIA---EGRRFLVQANAR  240 (408)
Q Consensus       205 --G~~~A~~~Lg~~y~~-G~----------Gv~~d~~---~A~~w~~kAA~~  240 (408)
                        ..+.|+|.+|.++.. +.          ...+|..   +|+.-|+.-.++
T Consensus       102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~  153 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG  153 (243)
T ss_pred             CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence              346688999987421 11          1334444   455666666654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=88.83  E-value=3.6  Score=43.74  Aligned_cols=66  Identities=14%  Similarity=-0.052  Sum_probs=55.7

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG  205 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G  205 (408)
                      ..++.++..+|.++. ..+++++|...|++|.+.. +..+++.+|.+|.. .|      +.++|+++|++|....
T Consensus       417 ~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~-~G------~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        417 NVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL-KG------DNRLAADAYSTAFNLR  483 (517)
T ss_pred             cCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcC
Confidence            346688888998888 6899999999999999876 57788888988864 45      8899999999999874

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.69  E-value=0.87  Score=28.65  Aligned_cols=28  Identities=32%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAI  164 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~  164 (408)
                      ++++.+|.+|. ..+|+++|+++|+++.+
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence            45677777777 46777777777777654

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=88.50  E-value=4.3  Score=37.33  Aligned_cols=100  Identities=20%  Similarity=0.147  Sum_probs=71.5

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---  204 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---  204 (408)
                      ..+++.|..|..++ ..+|+.+|+..|++....-     -+.|++.||..|... |      |+.+|+..|++-...   
T Consensus         3 ~~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~------~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen    3 DTAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-G------DYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             --HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-------HHHHHHHHHHHHHH-TT
T ss_pred             CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHHHCCC
Confidence            35778899998888 7899999999999988752     467999999999763 3      889999999998764   


Q ss_pred             --CCHHHHHHHHHHHHcC-CCc---ccc---HHHHHHHHHHHHHc
Q 015393          205 --GHIDALRELGHCLQDG-YGV---RQN---IAEGRRFLVQANAR  240 (408)
Q Consensus       205 --G~~~A~~~Lg~~y~~G-~Gv---~~d---~~~A~~w~~kAA~~  240 (408)
                        --+.|+|.+|.++..- .++   .+|   ..+|+..|+.-.++
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~  119 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR  119 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence              2356999999987543 233   333   34677777766653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=88.09  E-value=6.2  Score=44.56  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=58.3

Q ss_pred             HHHHHHH-HHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          121 SAHRFLK-LCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       121 ~A~~~l~-~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      .++.++. .-.+.+ +..|.+.||.+|. ..++.++++..|+++.+.  .++.++.++|..|..       . |+++|.+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------~-dL~KA~~  170 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------E-DKEKAIT  170 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------h-hHHHHHH
Confidence            4444444 334444 5569999999998 678899999999999877  489999999999964       2 8899999


Q ss_pred             HHHHHHh
Q 015393          197 LCARAAF  203 (408)
Q Consensus       197 ~~~kAA~  203 (408)
                      ++.+|..
T Consensus       171 m~~KAV~  177 (906)
T PRK14720        171 YLKKAIY  177 (906)
T ss_pred             HHHHHHH
Confidence            9999976

>PLN03218 maturation of RBCL 1; Provisional

Probab=87.99  E-value=13  Score=43.00  Aligned_cols=117  Identities=13%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          117 NWSESAHRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ...++|..+|....+.|   +...+..|...|. ..++.++|.++|++--+.|   +...+..|-..|.. .|      +
T Consensus       663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-~G------~  734 (1060)
T PLN03218        663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-GN------Q  734 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CC------C
Confidence            34566777777666666   4555666666655 4577777777777665544   34444444444432 23      6


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          191 LRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       191 ~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +++|+++|.+-.+.|...-...+..++ .+..-..++++|..+|.+..+.|.
T Consensus       735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi  785 (1060)
T PLN03218        735 LPKALEVLSEMKRLGLCPNTITYSILL-VASERKDDADVGLDLLSQAKEDGI  785 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCC
Confidence            778888888776666432222222222 233446677788888888777665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.88  E-value=0.51  Score=30.56  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=14.0

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHH
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGA  156 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~  156 (408)
                      ..|++++++||.+|. ..+++++|+
T Consensus        10 P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            346666666666665 445555553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.57  E-value=4.4  Score=42.86  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             HHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393          139 YTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELG  214 (408)
Q Consensus       139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg  214 (408)
                      |..|+.++ -.+++.+|+=.|+.|+.+.  |++|+-.||+....- +      +...|+.-++++.++  ++.+|+..||
T Consensus       289 f~eG~~lm-~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E------~E~~ai~AL~rcl~LdP~NleaLmaLA  360 (579)
T KOG1125|consen  289 FKEGCNLM-KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-E------NEQNAISALRRCLELDPTNLEALMALA  360 (579)
T ss_pred             HHHHHHHH-hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-c------chHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            34455555 4578999999999999884  999999999998642 2      455899999999887  7999999999


Q ss_pred             HHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          215 HCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       215 ~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                      +.|-+    +..-.+|++++.+=+....+..
T Consensus       361 VSytN----eg~q~~Al~~L~~Wi~~~p~y~  387 (579)
T KOG1125|consen  361 VSYTN----EGLQNQALKMLDKWIRNKPKYV  387 (579)
T ss_pred             HHHhh----hhhHHHHHHHHHHHHHhCccch
Confidence            99976    5556677777776665554433

>PLN03158 methionine aminopeptidase; Provisional

Probab=87.26  E-value=0.48  Score=48.50  Aligned_cols=43  Identities=26%  Similarity=0.713  Sum_probs=34.8

Q ss_pred             CCCCCcCcCCCCCCCccccccccCCccCCc-------cccCChhHHHhhchhhhhhhc
Q 015393          324 GPGLRLCSHVGCGRPETRRHEFRRCSVCGA-------VNYCSRACQALDWKLRHKADC  374 (408)
Q Consensus       324 ~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~-------~~YCs~~cQ~~dW~~~Hk~~C  374 (408)
                      .+..+.|.  +|++..+     ..|-.|..       .++||.+|=+..|+ .||..=
T Consensus         6 ~~~~~~c~--~c~~~a~-----l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h   55 (396)
T PLN03158          6 TTSPLACA--RCSKPAH-----LQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH   55 (396)
T ss_pred             CCCccccc--CCCCccc-----ccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence            45667899  8998765     88888853       78999999999999 488753

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.92  E-value=9.1  Score=36.93  Aligned_cols=63  Identities=19%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      -+.|+|.||..++ ..+|++.|.+.|...+..     --|++++.||++... .|      +.++|...|++....
T Consensus       177 ~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~------~~d~A~atl~qv~k~  244 (262)
T COG1729         177 TPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG------NTDEACATLQQVIKR  244 (262)
T ss_pred             cchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHH
Confidence            4679999999998 899999999999998865     257999999999853 34      778999999988775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=3.7  Score=39.47  Aligned_cols=67  Identities=18%  Similarity=0.167  Sum_probs=32.9

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      +|.+|+..|+.+|+ ..+++++|..+|+.-.-..  ++.-.-.||.+++.-.|+ .   |+.-|.+||.+|.+.
T Consensus       152 ~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~-e---N~~~arkyy~~alkl  220 (289)
T KOG3060|consen  152 NDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA-E---NLELARKYYERALKL  220 (289)
T ss_pred             CcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-H---HHHHHHHHHHHHHHh
Confidence            55555555665555 4555555555555543332  222223445444332221 1   455555555555554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.37  E-value=8.8  Score=39.06  Aligned_cols=77  Identities=17%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      ..+..||+++|+ -.+.+.+|+.+..++.+.  +|+.|+|.=|..|... |      ++..|...|++|.+.  .|-.+.
T Consensus       257 ~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~------e~~~A~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  257 LACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-G------EYDLARDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             HHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-c------cHHHHHHHHHHHHHhCCCcHHHH
Confidence            346778888887 567888999999998765  6999999999999753 4      899999999999986  688888


Q ss_pred             HHHHHHHHc
Q 015393          211 RELGHCLQD  219 (408)
Q Consensus       211 ~~Lg~~y~~  219 (408)
                      .+|..|-..
T Consensus       329 ~el~~l~~k  337 (397)
T KOG0543|consen  329 AELIKLKQK  337 (397)
T ss_pred             HHHHHHHHH
Confidence            888888754

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=86.25  E-value=0.58  Score=34.01  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=29.6

Q ss_pred             cCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393          346 RRCSVCGAVNYCSRACQALDWKLRHKADCAPAER  379 (408)
Q Consensus       346 ~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~  379 (408)
                      .-|..|+...|||+++=..|-. .|+..|..++.
T Consensus        15 ~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRq   47 (55)
T PF13824_consen   15 FECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQ   47 (55)
T ss_pred             CcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHH
Confidence            5699999999999999888888 59999998886

>PLN03218 maturation of RBCL 1; Provisional

Probab=86.03  E-value=63  Score=37.57  Aligned_cols=114  Identities=11%  Similarity=0.016  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHHHHcC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          117 NWSESAHRFLKLCADAG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ...++|..+|....+.|   |...+..|-..|. ..++.++|+++|....+.|   +...+..|..+|.. .|      +
T Consensus       628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~-k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k-~G------~  699 (1060)
T PLN03218        628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG-HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN-AK------N  699 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CC------C
Confidence            34577777777777666   4344444444444 4678888888888888777   45566666666643 33      7


Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          191 LRAGVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       191 ~~kA~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +++|.++|++--+.|   +...+..|-..|    .-..++++|.++|.+..+.|.
T Consensus       700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy----~k~G~~eeAlelf~eM~~~Gi  750 (1060)
T PLN03218        700 WKKALELYEDIKSIKLRPTVSTMNALITAL----CEGNQLPKALEVLSEMKRLGL  750 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCC
Confidence            788888888776554   444555555555    336788888888888777664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.71  E-value=4.4  Score=39.67  Aligned_cols=78  Identities=12%  Similarity=-0.019  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+..|.+|.+..  |+.=+.+-+..|. ..+.++.|++=.+.|....  +..|+-.||+.|.. .|      ++++|
T Consensus        97 Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~g------k~~~A  168 (304)
T KOG0553|consen   97 YQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LG------KYEEA  168 (304)
T ss_pred             HHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cC------cHHHH
Confidence            455666666665554  3333334444444 3455556666666555543  45556666666643 23      45566


Q ss_pred             HHHHHHHHhC
Q 015393          195 VALCARAAFL  204 (408)
Q Consensus       195 ~~~~~kAA~~  204 (408)
                      ++.|+||.+.
T Consensus       169 ~~aykKaLel  178 (304)
T KOG0553|consen  169 IEAYKKALEL  178 (304)
T ss_pred             HHHHHhhhcc
Confidence            6666666554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=84.78  E-value=5.7  Score=29.40  Aligned_cols=49  Identities=16%  Similarity=0.021  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS  166 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G  166 (408)
                      +..++|+.+++++...  .++.+.+.+|.+|+ ..+++.+|++.|+++.+.+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELS   59 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHC
Confidence            3457888888877765  58899999999998 6899999999999998775

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.62  E-value=1.9  Score=28.03  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      |+.+||.+|..    ..|.++|+.+|++|.
T Consensus         1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            46788888876    778888888888855

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=84.34  E-value=4.6  Score=44.14  Aligned_cols=77  Identities=21%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             HHHHHHHH--HHHHcCCHHHHHHhHHHHhhccCCHHHHHH--HHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          120 ESAHRFLK--LCADAGNVEACYTLGMIRFYCLQNRGSGAS--LMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       120 ~~A~~~l~--~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~--~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ++|..-|.  .+.+.+|+.++..||.+|. ..++...+..  .+.-|.+.+  +++|+|.||.++.. .|      |.++
T Consensus       701 ~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G------d~~~  772 (799)
T KOG4162|consen  701 EEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG------DSKQ  772 (799)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc------chHH
Confidence            34444444  5678899999999999999 3445554544  899999887  89999999999964 56      8889


Q ss_pred             HHHHHHHHHhC
Q 015393          194 GVALCARAAFL  204 (408)
Q Consensus       194 A~~~~~kAA~~  204 (408)
                      |.+.|.-|.+.
T Consensus       773 Aaecf~aa~qL  783 (799)
T KOG4162|consen  773 AAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHhh
Confidence            99999998875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=84.19  E-value=1  Score=29.16  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=18.9

Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHH
Q 015393          198 CARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGR  231 (408)
Q Consensus       198 ~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~  231 (408)
                      |+||.+.  .++.+.++||.+|..    ..|.++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~----~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN----QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence            5666665  577777777777764    34555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.07  E-value=2.1  Score=27.90  Aligned_cols=28  Identities=14%  Similarity=-0.015  Sum_probs=18.3

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAI  164 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~  164 (408)
                      .++.+||.+|. ..+++++|..+++++.+
T Consensus         3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYR-AQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhhcchhhHHHHHHHH
Confidence            45667777776 45777777777777653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=84.01  E-value=5.8  Score=44.68  Aligned_cols=82  Identities=21%  Similarity=0.063  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .+++++-.+++.+  ..|..|++.||..+...++|.++|.+.|..||+..  +.-|.-.|+.+|..- .   +.-++.++
T Consensus        18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~-~---dIl~ld~~   93 (1238)
T KOG1127|consen   18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY-N---DILDLDRA   93 (1238)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc-c---hhhhhhHh
Confidence            4677777777765  56999999999999988899999999999999884  777889999999772 2   12278899


Q ss_pred             HHHHHHHHhC
Q 015393          195 VALCARAAFL  204 (408)
Q Consensus       195 ~~~~~kAA~~  204 (408)
                      ...|.+++..
T Consensus        94 ~~~yq~~~l~  103 (1238)
T KOG1127|consen   94 AKCYQRAVLI  103 (1238)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.81  E-value=2.6  Score=26.51  Aligned_cols=30  Identities=17%  Similarity=0.190  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+++++|.+|..    .+++++|+..|++|.+.
T Consensus         1 a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ----LGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----hCCchHHHHHHHHHHHH
Confidence            3567778888865    67788888888877653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.71  E-value=1.4  Score=27.27  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=16.5

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHh
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAI  164 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~  164 (408)
                      +|+|.+|.+|. ..++.++|+.+|++..+
T Consensus         1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    1 DALYRLARCYY-KLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHH-HHCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HccCHHHHHHHHHHHHH
Confidence            35666666666 35566666666665443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.62  E-value=7.2  Score=38.22  Aligned_cols=84  Identities=14%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCcHHHH--HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCc
Q 015393          148 CLQNRGSGASLMAKAAISSHAQAL--YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGV  223 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~G~~~A~--~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv  223 (408)
                      -.++|.+|+..|.+|.+..-..|.  .+=+-.|.. .|      .++.|++=++.|...  .+..|+-.||+.|...-  
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g--  163 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LG------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG--  163 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hc------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC--
Confidence            468899999999999998744433  344555532 34      677899999999877  57999999999997654  


Q ss_pred             cccHHHHHHHHHHHHHcCC
Q 015393          224 RQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       224 ~~d~~~A~~w~~kAA~~G~  242 (408)
                        ++++|++.|+||.+..-
T Consensus       164 --k~~~A~~aykKaLeldP  180 (304)
T KOG0553|consen  164 --KYEEAIEAYKKALELDP  180 (304)
T ss_pred             --cHHHHHHHHHhhhccCC
Confidence              57889999999998643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=83.35  E-value=6.3  Score=42.92  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALR  211 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~  211 (408)
                      .|++.+|...+ ..+|++++.+.|+.+.+.  +....+|.+|.++..= +      +...|++.|.+....  ++.+|..
T Consensus       486 rA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-e------k~q~av~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  486 RAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-E------KEQAAVKAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             HHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-h------hhHHHHHHHHHHhhcCCCchhhhh
Confidence            35555555444 468888999999888766  4677777777777542 2      677899999988765  8899999


Q ss_pred             HHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          212 ELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       212 ~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+..|..    -++..+|..-+.+|..-.
T Consensus       558 Nls~ayi~----~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  558 NLSTAYIR----LKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhhHHHHH----HhhhHHHHHHHHHHhhcC
Confidence            99999954    678888999999988654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.51  E-value=10  Score=35.47  Aligned_cols=47  Identities=13%  Similarity=0.101  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393          153 GSGASLMAKAAISSH--------AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH  206 (408)
Q Consensus       153 ~~A~~~~~kAA~~G~--------~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~  206 (408)
                      .+|+++|++|-+..+        ...+|.+|.++.. .|      +.++|.+||.+....+.
T Consensus       142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg------~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LG------NYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHcCCC
Confidence            367777777775542        3566777777654 45      78899999999887654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.53  E-value=10  Score=35.22  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             HHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          128 LCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       128 ~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      .-....+|...|.     .-...+-..|+.-|.++...+   .++-++.||.+|..     .   |..|++.+|.++.+.
T Consensus       103 ~tk~S~dP~llYy-----~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----r---D~~Kt~~ll~~~L~l  169 (203)
T PF11207_consen  103 ETKNSQDPYLLYY-----HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTK-----R---DPEKTIQLLLRALEL  169 (203)
T ss_pred             HHccCCCccHHHH-----HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----c---CHHHHHHHHHHHHHh
Confidence            3344456654332     224445577888887776665   89999999999953     2   889999999999875


Q ss_pred             ---C---CHHHHHHHHHHHHcCCCccccHHHHHHHH
Q 015393          205 ---G---HIDALRELGHCLQDGYGVRQNIAEGRRFL  234 (408)
Q Consensus       205 ---G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~  234 (408)
                         +   +++-...|+.+|+.    .++.++|.-|-
T Consensus       170 ~~~~~~~n~eil~sLas~~~~----~~~~e~AYiwa  201 (203)
T PF11207_consen  170 SNPDDNFNPEILKSLASIYQK----LKNYEQAYIWA  201 (203)
T ss_pred             cCCCCCCCHHHHHHHHHHHHH----hcchhhhhhhe
Confidence               3   57788889999976    77888887774

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.03  E-value=6.4  Score=36.82  Aligned_cols=70  Identities=16%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH--------IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       171 ~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~--------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +..||.+|.....-.....=+.+|+++|.+|-+..+        ...+|.+|.++..    -.|.++|.+||.+....+.
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCC
Confidence            345666664322100001124567777777776432        3466777777765    5788999999999988665


Q ss_pred             HH
Q 015393          243 AA  244 (408)
Q Consensus       243 ~~  244 (408)
                      ..
T Consensus       197 ~s  198 (214)
T PF09986_consen  197 AS  198 (214)
T ss_pred             CC
Confidence            43

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=80.16  E-value=6.1  Score=40.16  Aligned_cols=87  Identities=10%  Similarity=0.033  Sum_probs=58.3

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHcCC--CCCCCccCHHHHHHHHHHHHhC-C
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAI---SSHAQALYSLAVIQFNGS--GGSKNDKDLRAGVALCARAAFL-G  205 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~---~G~~~A~~~Lg~~y~~G~--Gv~~~~~d~~kA~~~~~kAA~~-G  205 (408)
                      ..+..-+|.+++....-++|.++|+.++..+..   .-+++.+-.+|.+|.+-.  ....+...+.+|+.||+++-+. .
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            344445555555544457999999999998443   347889999999995431  1112344689999999999885 4


Q ss_pred             CHHHHHHHHHHHH
Q 015393          206 HIDALRELGHCLQ  218 (408)
Q Consensus       206 ~~~A~~~Lg~~y~  218 (408)
                      +..+-.|++.++.
T Consensus       258 ~~Y~GIN~AtLL~  270 (374)
T PF13281_consen  258 DYYSGINAATLLM  270 (374)
T ss_pred             cccchHHHHHHHH
Confidence            4445555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	6e-14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	3e-13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-10
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-14
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-14
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	8e-14
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-13
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	8e-08
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-10
1klx_A	138	Cysteine rich protein B; structural genomics, heli	4e-12
1klx_A	138	Cysteine rich protein B; structural genomics, heli	4e-08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	6e-12
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-11
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-11
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	4e-08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	9e-08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-07
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	2e-09
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	3e-09
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	1e-08
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	2e-08
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	4e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-04

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFYCL---QNRGSGASLMAKAAISSHAQALYSLAV 176
             A ++ +   D      C+ LG++ +      +N    AS  AKA   +++   + L  
Sbjct: 23  TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236
           + ++G G S+N    +A +   ++A  L + +    LG    DG  V ++  +   +  +
Sbjct: 83  LYYSGQGVSQNTN--KA-LQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139

Query: 237 A 237
           A
Sbjct: 140 A 140

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A  +     D  + + C  LG +        ++     +   KA     +   ++   + 
Sbjct: 133 AVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
            +G G +KN K     +A  ++A  L +      LG    +G GV +N  +      + 
Sbjct: 193 HHGEGATKNFK---EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A  F     D      C+ LG + +      QN        +KA    +A+   SL  I 
Sbjct: 61  AASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIY 120

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
            +G   +++ K  +A V    +A  L   D    LG     G G  +++ +      +A
Sbjct: 121 HDGKVVTRDFK--KA-VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR 192
            + +    LG  + Y  ++         KA         ++L V+ + G G  KN K   
Sbjct: 4   QDPKELVGLG-AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLK--- 59

Query: 193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
              +  A+A  L + +    LG+    G GV QN  +  ++  +A
Sbjct: 60  KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A        D  +   C+  G +  +     +N     +  +KA    +    ++L  +Q
Sbjct: 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQ 228

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN 226
           +NG G ++N+K     +    +   LG   A   L       +    +
Sbjct: 229 YNGEGVTRNEK---QAIENFKKGCKLGAKGACDILKQLKIKVHHHHHH 273

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMI--RFYCLQNRGSGASLMAKAAISSHAQALYSLAVI 177
           E A  +    A+ G+  A   LG I  R    +          KAA      A ++L   
Sbjct: 313 EQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA 372

Query: 178 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
              G G     KD +       +AA  G   A  +LG     G GV ++  +   +   A
Sbjct: 373 LLQGKGV---KKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAV 176
                 LK  A++G  +A   LG   F      ++         +AA   +  A Y L +
Sbjct: 24  NVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGL 83

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236
              NG G  ++       V    +AA  G   A + LG    +G GV+ + AE  ++   
Sbjct: 84  RYMNGEGVPQDYA---QAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL 140

Query: 237 A 237
           A
Sbjct: 141 A 141

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A  +    A+ GNV +C  LG +        +N    A    K+A S        LA + 
Sbjct: 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY 229

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
           + G G +++    ++   L +++A  G+  A   LG+ L+ G    +   +   +  ++
Sbjct: 230 YFGIGVTQDYT--QS-RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFYCL---QNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A  + +  A+ G   A Y LG+         Q+         KAA+    QA  +L V+ 
Sbjct: 62  AMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMY 121

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
             G+G      D    V     AA  G     + +G    +G GV ++    R +  +A
Sbjct: 122 HEGNGV---KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAV 176
             A  + K  A  G  +A   LG++         ++         AA         S+  
Sbjct: 96  AQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236
             F G G +++           ++AA  G++ +  +LG+    G GV +N A   ++  +
Sbjct: 156 AYFEGDGVTRDYV---MAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212

Query: 237 A 237
           +
Sbjct: 213 S 213

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFY----CLQNRGSGASLMAKAAISSHAQALYSLA 175
             A  + +  A+ GN +  Y L  +         +NR    S   K+A    A A  +L 
Sbjct: 276 LKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLG 335

Query: 176 VIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLV 235
            I F   G  +  K  +A V    +AA  G   A   LG+ L  G GV+++  +   ++ 
Sbjct: 336 AIYFRL-GSEEEHK--KA-VEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391

Query: 236 QA 237
           +A
Sbjct: 392 KA 393

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           + ++ +  A +G+      L  + ++     Q+      L +++A   ++ A + L  I 
Sbjct: 206 SAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGY-GVRQNIAEGRRFLVQA 237
             G  G    K+    +    ++A  G+ D    L H    G  GV +N  +   +  ++
Sbjct: 266 EQGLAG---AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 150 QNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDA 209
                    + + A S  A+A   L    F G+  +K+       +    RAA  G+  A
Sbjct: 21  ALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLT---QAMDWFRRAAEQGYTPA 77

Query: 210 LRELGHCLQDGYGVRQNIAEGRRFLVQA 237
              LG    +G GV Q+ A+   +  +A
Sbjct: 78  EYVLGLRYMNGEGVPQDYAQAVIWYKKA 105

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 7/108 (6%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           A  +++  A+ G   A   LG I +Y     ++     +    A+ +           I 
Sbjct: 386 AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQN 226
                     K L+    L  +       +A   +            N
Sbjct: 446 EKKLTA----KQLQQAELLSQQYIEKYAPEAWARMQKLKAQSAVKTGN 489

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 170 ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAE 229
            L  +    F               +    + A  G   A  ELG+    G    +++ +
Sbjct: 5   LLAVMLTGLFALVSLPALGN---VNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQ 61

Query: 230 GRRFLVQA 237
              +  +A
Sbjct: 62  AMDWFRRA 69

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 6/119 (5%)

Query: 119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQ 178
           +E   ++ +  A+AG+  A Y L    +    +         KAA      AL  LA ++
Sbjct: 3   TEPGSQYQQQ-AEAGDRRAQYYLADT-WVSSGDYQKAEYWAQKAAAQGDGDALALLAQLK 60

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
                      D      L  +A   G       L   L +      ++A     L  A
Sbjct: 61  IRNPQ----QADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA 115

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 13/124 (10%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFYCL----QNRGSGASLMAKAAISSHAQALYSLAVI 177
           A  + +  A  G+ +A   L  +          +      L  KA  +        LA +
Sbjct: 37  AEYWAQKAAAQGDGDALALLAQL--KIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARV 94

Query: 178 QFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRE----LGHCLQDGYGVRQNIAEGRRF 233
             N   G+ +     A + L   AA     DA  +    LG     G    ++  +   +
Sbjct: 95  LVNRQAGATDVA--HA-ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151

Query: 234 LVQA 237
              +
Sbjct: 152 FKGS 155

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 122 AHRFLKLCADAGNVEACYTLG-MIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFN 180
           A ++     +   +  C +L    +     N+      ++KA   +       L     N
Sbjct: 14  AIQYYVKACELNEMFGCLSLVSNSQ----INKQKLFQYLSKACELNSGNGCRFLGDFYEN 69

Query: 181 GSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
           G    K+ +  +A     ++A  L   D    LG+    G GV +N  +  +   +A
Sbjct: 70  GKYVKKDLR--KA-AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFYCL-----QNRGSGASLMAKAAISSHAQALYSLAV 176
             ++L    +  +   C  LG   FY       ++    A   +KA   +       L  
Sbjct: 44  LFQYLSKACELNSGNGCRFLGD--FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGH 215
            Q+ G G  KN+K  +A V    +A  LG  DA   L +
Sbjct: 102 KQYAGKGVVKNEK--QA-VKTFEKACRLGSEDACGILNN 137

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 112 AIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSG-------ASLMAKAAI 164
           A+K  +   +   + +L A+ G  EA   L  I+       G+        A    +AA 
Sbjct: 13  ALKRGDTVTAQQNYQQL-AELGYSEAQVGLADIQV------GTRDPAQIKQAEATYRAAA 65

Query: 165 SSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVR 224
            +  +A   L  +     G ++   +     +L  +A   G  + L  L           
Sbjct: 66  DTSPRAQARLGRLLAAKPGATE--AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSF 123

Query: 225 QNIAEGRRF 233
            N+   ++ 
Sbjct: 124 PNVNAQQQI 132

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 7/119 (5%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFYCL---QNRGSGASLMAKAAISSHAQALYSLAVIQ 178
             ++L     A    A   LG + +       +  +  +   KA       A Y L  I 
Sbjct: 270 MMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328

Query: 179 FNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA 237
             G  G    +     +     AA  G   A   +      G G + +      F   A
Sbjct: 329 RRGYLGKVYPQ---KALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFY-----CLQNRGSGASLMAKAAISSHAQALYSLAV 176
             + ++     G V A     + R          +  +  +L+ K A   +  +  SLA 
Sbjct: 198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ 236
           + ++         D+   +             A   LG    +G  V  +         +
Sbjct: 257 LLYDFPE----LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEK 312

Query: 237 ANARELAA 244
           A  RE+AA
Sbjct: 313 AVGREVAA 320

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 8/119 (6%)

Query: 130 ADAGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKN 187
             AG  EA     ++                + KAA+++       LA +          
Sbjct: 136 QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQ---- 191

Query: 188 DKDLRAGVALCARAAFLGHIDALRELG--HCLQDGYGVRQNIAEGRRFLVQANARELAA 244
            +     +         G + A R       L D      +    +  L +      A+
Sbjct: 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPAS 250

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 120 ESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAV 176
           ++A    +  A    V A Y LG I                 +  AA +    A +++A 
Sbjct: 304 KAAEAHFEK-AVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQ 362

Query: 177 IQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAE 229
           +   G G      D          A      +A              ++   +
Sbjct: 363 LFSQGKGT---KPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQ 412

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 16/130 (12%)

Query: 122 AHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSG-------ASLMAKAAISSHAQALYSL 174
           A   LK     G       L M     L  +             +++   + + +A  + 
Sbjct: 93  AESLLKKAFANGEGNTLIPLAM-----LYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147

Query: 175 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFL 234
            ++ +   G      D    V    +AA         EL    Q      Q     ++  
Sbjct: 148 VLL-YRTQGTYDQHLD---DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203

Query: 235 VQANARELAA 244
              +   + A
Sbjct: 204 AGVSRGTVTA 213

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 320 GGTPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAP 376
           G         C +  CGR  +       CS C    YC   CQ  DW+ +H   C  
Sbjct: 6   GSPNSDSSESCWN--CGRKASET-----CSGCNTARYCGSFCQHKDWE-KHHHICGQ 54

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 328 RLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAP 376
             C +  CGR  +       CS C    YC   CQ  DW+ +H   C  
Sbjct: 18  ESCWN--CGRKASET-----CSGCNTARYCGSFCQHKDWE-KHHHICGQ 58

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPA 377
           V CGR          C+ C  VNYCS  CQ  DWK  H+  C  +
Sbjct: 13  VNCGREAMSE-----CTGCHKVNYCSTFCQRKDWK-DHQHICGQS 51

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 322 TPGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE 378
                   C +  CGR  +       CS C    YC   CQ  DW+ +H   C+   
Sbjct: 10  QQEDSSESCWN--CGRKASET-----CSGCNTARYCGSFCQHKDWE-KHHHICSGPS 58

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 323 PGPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380
             P    C++  C    ++R     CS C    YC R CQ   W+ +H   C  A + 
Sbjct: 11  VAPERPRCAY--CSAEASKR-----CSRCQNEWYCCRECQVKHWE-KHGKTCVLAAQG 60

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 330 CSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW 380
             +  C     R+ +  RC  C   +YC R CQ   W   HK +CA  +++
Sbjct: 47  LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAIKKY 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.7
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.88
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.8
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.8
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	98.77
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.59
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.58
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.46
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.39
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.38
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.38
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.37
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.35
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.28
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.21
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.2
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.19
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.15
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.1
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.1
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.08
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.07
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.03
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.03
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.03
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.03
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.02
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.02
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.01
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.01
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.96
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.95
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.94
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.93
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.91
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.9
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.89
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.87
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.87
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.82
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.8
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.79
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.73
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.71
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.71
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.69
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.69
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.69
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.67
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.67
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.65
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.64
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.61
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.61
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.55
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.54
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.45
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.43
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.41
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.4
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.39
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.99
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.94
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.89
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.87
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.76
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.47
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.43
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	96.37
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.72
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.28
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.25
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.14
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.82
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.86
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.56
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	93.04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	92.99
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	92.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	92.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	92.54
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.43
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	91.87
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	90.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	90.01
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	87.38
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	86.5
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	84.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.25
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	82.76
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	82.51
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	82.31
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	82.21
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	81.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	80.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	80.38

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=7.1e-25  Score=188.79  Aligned_cols=126  Identities=18%  Similarity=0.113  Sum_probs=119.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHH
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVAL  197 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~  197 (408)
                      +.++|+.||+++++.|++.|+  ||.+|.. ..+.++|++||++|++.|++.|+++||.+|..|.|+++   |+.+|++|
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~-g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC--LSLVSNS-QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK---DLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH--HHHHTCT-TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh--HHHHHHc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc---cHHHHHHH
Confidence            467999999999999999999  9999984 46677899999999999999999999999999999888   99999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          198 CARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       198 ~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      |++|++.|++.|+++||.+|..|.||++|.++|++||++|++.|++.|+...
T Consensus        84 ~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l  135 (138)
T 1klx_A           84 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL  135 (138)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=5.7e-22  Score=181.85  Aligned_cols=129  Identities=16%  Similarity=0.095  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCccC
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSH----AQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ..++|+.||+++++.|++.|+++||.+|..   +.+|+++|++||++|++.|+    +.|+++||.+|..|.|+++   |
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~---d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE---D  144 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC---C
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC---C
Confidence            567777777777777777777777777762   36777777777777777777    7777777777777777666   7


Q ss_pred             HHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCC--ccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          191 LRAGVALCARAAFL-GHIDALRELGHCLQDGYG--VRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       191 ~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~~G~G--v~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      +.+|++||++|++. |++.|+++||.+|..|.|  |++|+++|+.||++|++.|+..|....
T Consensus       145 ~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l  206 (212)
T 3rjv_A          145 DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF  206 (212)
T ss_dssp             HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777776 777777777777777766  777777777777777777777776553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=8.6e-22  Score=180.65  Aligned_cols=130  Identities=17%  Similarity=0.132  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      ...++|+.||+++++.|++.|+++||.+|..  +++|+++|++||++|++.|++.|+++||.+|..|.|+.+   |+.+|
T Consensus        32 ~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~---d~~~A  108 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGAT---DVAHA  108 (212)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSC---CHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc---CHHHH
Confidence            4678999999999999999999999999994  345999999999999999999999999999999999887   99999


Q ss_pred             HHHHHHHHhCCC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc-CCHHHHhhh
Q 015393          195 VALCARAAFLGH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR-ELAAVLSSA  249 (408)
Q Consensus       195 ~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~-G~~~A~~~~  249 (408)
                      ++||++|++.|+    +.|+++||.+|..|.||++|.++|+.||++|++. |++.|+...
T Consensus       109 ~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L  168 (212)
T 3rjv_A          109 ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA  168 (212)
T ss_dssp             HHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             HHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999    9999999999999999999999999999999998 888886653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=8.8e-22  Score=201.25  Aligned_cols=181  Identities=15%  Similarity=0.145  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHh--hccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRF--YCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~--~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      ...++|+.||++++ .|++.|+++||.+|+  ...+|+++|++||++|++.|++.|+++||.+|..|.|+++   |+.+|
T Consensus       231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~---d~~~A  306 (452)
T 3e4b_A          231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPA---DAKAA  306 (452)
T ss_dssp             CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHHH
T ss_pred             CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---CHHHH
Confidence            56788888998888 889999999998855  4678888999999999988999999999999888888777   88899


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh-----hccCccccc--cccc---CC
Q 015393          195 VALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA-----ACQGISTRS--WLTW---NP  264 (408)
Q Consensus       195 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~-----~~~~~~~~~--~~~~---~~  264 (408)
                      ++||++|+ .|++.|+++||.+|..|.||++|.++|+.||++|++.|++.|+...     .|.|+.++.  ...|   ..
T Consensus       307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            99999988 8889999999999988888888999999999999988888876653     344444442  2222   21


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCCCCchhhHHHHHHHHhcC
Q 015393          265 LSQPHPAPHPRNQNPNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARG  320 (408)
Q Consensus       265 ~~~~~~~~~~rk~~~~~~l~~~~~~~~lLs~~~~~lp~~e~~~A~~fmkewf~~~~  320 (408)
                      ..+                  ...+...|..+...+++.+...+..++..|...++
T Consensus       386 ~~g------------------~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~  423 (452)
T 3e4b_A          386 AQD------------------TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARG  423 (452)
T ss_dssp             TTC------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HCC------------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            111                  11234466777778888888899999999988764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.86  E-value=4e-21  Score=196.36  Aligned_cols=130  Identities=18%  Similarity=0.123  Sum_probs=123.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.||+++++.|++.|+++||.+|..   +++|+++|++||++|+ .|++.|+++||.+|..|.|+++   |+.
T Consensus       264 ~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~---d~~  339 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKV---YPQ  339 (452)
T ss_dssp             GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSC---CHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCc---CHH
Confidence            45689999999999999999999999999984   4679999999999999 9999999999999999999888   999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      +|++||++|++.|++.|+++||.+|..|.||++|..+|+.||++|+++|+..|....
T Consensus       340 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l  396 (452)
T 3e4b_A          340 KALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA  396 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999986653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=1.6e-18  Score=177.44  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ...++|+.||+++++.|++.|+++||.+|..   +.+|+++|+.||++|++.|++.|+++||.+|..|.|+++   |+++
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---d~~~  169 (490)
T 2xm6_A           93 QDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTR---DYVM  169 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---CHHH
Confidence            3456666666666666666666666666663   256666666666666666666666666666666666555   6666


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          194 GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      |++||++|++.|++.+++.||.+|..|.|+++|.++|+.||++|++.|++.+....
T Consensus       170 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l  225 (490)
T 2xm6_A          170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHL  225 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666665543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=3e-18  Score=175.46  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.||+++++.|++.|+++||.+|..   +.+|+++|++||++|++.|++.|+++||.+|..|.|+.+   |++
T Consensus       128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---~~~  204 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER---NDA  204 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc---CHH
Confidence            34566777777777777777777777777763   367777777777777777777777777777777777666   777


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      +|++||++|++.|++.+++.||.+|..|.|+.+|.++|+.||++|++.|++.+....
T Consensus       205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l  261 (490)
T 2xm6_A          205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL  261 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777766553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.79  E-value=2.7e-18  Score=147.48  Aligned_cols=129  Identities=16%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             ChHhHHHHHHHHHHHHHhhcCchHHhhcchhHHHhhhcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHH
Q 015393           79 CPSDFVNVLITCKRMNGLALNSLVLSKASKKTFAIKANNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSG  155 (408)
Q Consensus        79 sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A  155 (408)
                      .+.|+..+....++..+.+.....     ...+ .......++|+.||++|++.|++.|+++||.+|..   +++|+++|
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a~-----lg~~-y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFGC-----LSLV-SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTHH-----HHHH-TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHhhh-----HHHH-HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            445666655555544444422211     1111 12223456699999999999999999999999994   48999999


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 015393          156 ASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC  216 (408)
Q Consensus       156 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~  216 (408)
                      ++||++|++.|++.|+++||.+|..|.||++   |+++|++||++|+++|++.|+++|+.+
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~Aa~~g~~~A~~~l~~l  138 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVK---NEKQAVKTFEKACRLGSEDACGILNNY  138 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHHHHTTCHHHHHHC---
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCc---CHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            9999999999999999999999999999888   999999999999999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=3.9e-16  Score=146.30  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=106.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.+|+++++.+++.++++||.+|..   ..+++++|+.||++|++.+++.++++||.+|..|.|+..   |++
T Consensus       127 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~---~~~  203 (273)
T 1ouv_A          127 TRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK---NFK  203 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC---CHH
T ss_pred             ccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc---cHH
Confidence            44567888888888888888888888888873   367888888888888888888888888888888877665   888


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      +|+.||++|++.|++.+++.||.+|..|.|+.+|.++|+.||++|++.|+..+....
T Consensus       204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888776664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.70  E-value=1.3e-15  Score=142.71  Aligned_cols=129  Identities=19%  Similarity=0.179  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ...++|+.+|+++++.+++.++++||.+|..   +.+|+++|+.||++|++.+++.++++||.+|..|.|+..   |+++
T Consensus        56 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~---~~~~  132 (273)
T 1ouv_A           56 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR---DFKK  132 (273)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc---CHHH
Confidence            3455666666666666666666666666652   256666666666666666666666666666666655444   6666


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393          194 GVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS  248 (408)
Q Consensus       194 A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~  248 (408)
                      |++||++|++.+++.++++||.+|..|.|+.+|.++|+.||++|++.+++.+...
T Consensus       133 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~  187 (273)
T 1ouv_A          133 AVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFN  187 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6666666666666666666666666666666666666666666666666555433

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.88  E-value=1.5e-09  Score=82.27  Aligned_cols=47  Identities=34%  Similarity=0.777  Sum_probs=39.5

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAER  379 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~  379 (408)
                      +..+.|.  .|++.     .+++|++|+.++|||++||+.||+. ||.+|.++..
T Consensus        13 ~~~~~C~--~C~~~-----~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~   59 (70)
T 2d8q_A           13 PERPRCA--YCSAE-----ASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ   59 (70)
T ss_dssp             CCCCBCS--SSCCB-----CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred             CCCCcCC--CCCCc-----ccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence            3457898  66664     3699999999999999999999995 9999997653

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=1.8e-09  Score=79.44  Aligned_cols=46  Identities=33%  Similarity=0.799  Sum_probs=38.4

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE  378 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~  378 (408)
                      .....|.  .|++.     .+++|++|+.++|||++||+.||+ .||.+|..+.
T Consensus        11 ~~~~~C~--~C~~~-----~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~~~   56 (60)
T 2od1_A           11 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL   56 (60)
T ss_dssp             CCSSCCT--TTSSC-----CCEECTTTSCCEESSHHHHHHHHH-HHTTTSSCSS
T ss_pred             CCCCccc--cCCCc-----ccccCCCCCCeeecCHHHHHHHHH-HHhHHHcccc
Confidence            4457898  56663     358999999999999999999999 5999998654

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.80  E-value=1.8e-09  Score=79.36  Aligned_cols=46  Identities=33%  Similarity=0.813  Sum_probs=38.5

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE  378 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~  378 (408)
                      .....|.  .|++.     .+++|++|+.++|||++||+.||+ .||.+|..+.
T Consensus        13 ~~~~~C~--~C~~~-----~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~~   58 (60)
T 2dj8_A           13 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICSGPS   58 (60)
T ss_dssp             CCSCCCS--SSCSC-----CCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCSS
T ss_pred             CCCcccc--cCCCC-----CcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhcc
Confidence            3457898  56663     358999999999999999999999 5999998754

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=98.77  E-value=2.4e-09  Score=79.79  Aligned_cols=46  Identities=33%  Similarity=0.799  Sum_probs=38.3

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE  378 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~  378 (408)
                      +....|.  .|++.     .+++|++|+.++|||++||+.||+ .||..|..+.
T Consensus        15 ~~~~~C~--~C~~~-----~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~~   60 (64)
T 2odd_A           15 DSSESCW--NCGRK-----ASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL   60 (64)
T ss_dssp             CCSSSCT--TTSSC-----CCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSSC
T ss_pred             CCCCcCc--cccCC-----CcccCCCCCChhhCCHHHHHHHHH-HHhHHHhccc
Confidence            3457898  56663     358999999999999999999999 6999998653

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.76  E-value=3.3e-09  Score=75.58  Aligned_cols=43  Identities=42%  Similarity=0.961  Sum_probs=35.0

Q ss_pred             CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchh
Q 015393          326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAP  376 (408)
Q Consensus       326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~  376 (408)
                      ....|.  .|++.     .+++|++|+.++|||++||..||+ .||.+|.+
T Consensus         8 ~~~~C~--~C~~~-----~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C~~   50 (52)
T 2jw6_A            8 KEQSCV--NCGRE-----AMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ   50 (52)
T ss_dssp             ---CCS--SSSSS-----CSEECTTTCSSEESSHHHHHHHTT-TGGGTTTC
T ss_pred             cCCcCC--CCCCC-----CcCcCCCCCCEeecCHHHHHHHHH-HHCHHHcc
Confidence            456888  56664     369999999999999999999999 59999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.64  E-value=4.6e-07  Score=97.85  Aligned_cols=110  Identities=21%  Similarity=0.143  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+..|++|.+.  .+++++++||.+|. ..+++++|+++|++|.+.  ++++|+++||.+|.. .|      ++++
T Consensus        58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g------~~~e  129 (723)
T 4gyw_A           58 KLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG------NIPE  129 (723)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence            345555555555443  35556666666555 455566666666665544  355566666665543 23      5556


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      |+++|++|.+.  +++.+.++||.+|..    ..+.++|.++|+++.+
T Consensus       130 Ai~~~~~Al~l~P~~~~a~~~L~~~l~~----~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          130 AIASYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHhhhhhHHHh----cccHHHHHHHHHHHHH
Confidence            66666665553  455566666666543    3455555555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.59  E-value=6.8e-07  Score=74.39  Aligned_cols=102  Identities=12%  Similarity=0.027  Sum_probs=77.2

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      .+++..++|..|+ ..+++++|+++|++|.+.  .++.+++++|.+|.. .|      ++.+|+.+|++|.+.  .++.+
T Consensus        12 ~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A           12 LAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LM------EFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hc------cHHHHHHHHHHHHHhhhhhhHH
Confidence            3456777888887 678888888888888765  478888888888864 34      788888888888764  67888


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS  247 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~  247 (408)
                      ++.+|.+|..    ..++++|+.+|++|.+.  .+..+..
T Consensus        84 ~~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           84 YIRKAACLVA----MREWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            8888888865    67888888888888775  3444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.58  E-value=3.9e-07  Score=78.99  Aligned_cols=98  Identities=11%  Similarity=0.077  Sum_probs=86.3

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      .++++.|.+|..|+ ..+++++|+.+|+++...  .++.++++||.+|.. .|      ++++|+..|++|...  +++.
T Consensus        34 ~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g------~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           34 DMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KE------QFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc------cHHHHHHHHHHHHhhCCCCcH
Confidence            46678999999998 789999999999999876  589999999999975 44      899999999999876  7899


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +.++||.+|..    ..+.++|+.+|++|.+...
T Consensus       106 ~~~~lg~~~~~----lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          106 PVFHTGQCQLR----LKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence            99999999976    7899999999999998654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.55  E-value=2.8e-07  Score=78.92  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+..|+++...  .++.+.|.||.+|+ ..+++++|+++|++|.+.  .++.++++||.+|.. .|      ++++|
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~A   84 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EE------NTDKA   84 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------chHHH
Confidence            57888888877654  46678899999998 689999999999999877  589999999999975 34      89999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHH-HHHHHHHHHHc--CCHHHH
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAE-GRRFLVQANAR--ELAAVL  246 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~-A~~w~~kAA~~--G~~~A~  246 (408)
                      +.+|++|.+.  .++.+.+.||.+|..    ..+..+ +..|+++|.+.  +++.+.
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHH
Confidence            9999999986  689999999999965    334444 45567888874  455543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.50  E-value=1.7e-06  Score=78.43  Aligned_cols=113  Identities=12%  Similarity=-0.021  Sum_probs=86.0

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-----------CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-----------QNRGSGASLMAKAAIS--SHAQALYSLAVIQFN  180 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-----------~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~  180 (408)
                      ....++|+.+|+++.+.  .++.+.++||.+|. ..           +++++|+..|++|.+.  .++.+.++||.+|..
T Consensus        52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34467788888877654  57788888888887 45           7888888888888886  477888888888853


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          181 GSGGSKNDKDLRAGVALCARAAFL-GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .|      ++++|+.+|++|.+. .++.+.++||.+|..    ..+.++|+.+|++|.+.
T Consensus       131 -~g------~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          131 -LG------ERDKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             -TT------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             -cC------ChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence             55      788888888888654 677888888888865    56788888888888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.48  E-value=2.3e-06  Score=77.55  Aligned_cols=111  Identities=14%  Similarity=-0.013  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCC----------CC
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGS----------GG  184 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~----------Gv  184 (408)
                      .++|+.+|+++.+.  .++++.++||.+|. ..+++++|+.+|++|.+.  .++.+.++||.+|..-.          | 
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g-   98 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG-   98 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc-
Confidence            45556666655443  45666666666665 455666666666665544  35556666666654310          2 


Q ss_pred             CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          185 SKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       185 ~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                           ++++|+..|++|.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus        99 -----~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           99 -----YLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALAL  147 (217)
T ss_dssp             -----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhc
Confidence                 555666666666553  455666666666644    45566666666666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.46  E-value=1.3e-06  Score=72.51  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC-------
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG-------  205 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G-------  205 (408)
                      +.|..+||..|+ ..+++++|+.+|++|.+.  .++.+++++|.+|.. .|      ++.+|+.+|++|.+..       
T Consensus         8 A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            8 AIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EK------KFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hh------hHHHHHHHHHHHHHhCcccchhh
Confidence            457788999998 689999999999999876  589999999999975 44      8999999999998742       


Q ss_pred             --CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          206 --HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       206 --~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        ...++++||.+|..    ..++++|+.+|++|...
T Consensus        80 ~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence              13588999999976    78999999999999863

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.42  E-value=3.4e-06  Score=74.72  Aligned_cols=113  Identities=11%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          117 NWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      ...++|+.+|+++.+ .++.+.+++|.+|. ..+++++|+.+|++|...  .++.+++++|.+|.. .|      ++.+|
T Consensus        20 ~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~------~~~~A   90 (213)
T 1hh8_A           20 KDWKGALDAFSAVQD-PHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TE------KYDLA   90 (213)
T ss_dssp             TCHHHHHHHHHTSSS-CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             CCHHHHHHHHHHHcC-CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cc------cHHHH
Confidence            346789999998864 48999999999998 689999999999999876  589999999999975 44      89999


Q ss_pred             HHHHHHHHhCC------------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          195 VALCARAAFLG------------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       195 ~~~~~kAA~~G------------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +.+|+++.+..                  .+.+.++||.+|..    ..+.++|+.+|++|.+...
T Consensus        91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCc
Confidence            99999999852                  23899999999976    6799999999999998654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.41  E-value=2.2e-06  Score=73.19  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=84.0

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      .++.+.+.+|..|+ ..+++++|+.+|+++...  .++.++++||.+|.. .|      ++++|+.+|++|...  .++.
T Consensus        19 ~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           19 DTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MG------QYDLAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCTH
T ss_pred             hhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCch
Confidence            46778899999998 689999999999999766  589999999999964 44      899999999999875  6899


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.++||.+|..    ..+.++|+.+|++|.+.
T Consensus        91 ~~~~lg~~~~~----~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           91 FPFHAAECLLQ----XGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            99999999976    78999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.40  E-value=2.4e-06  Score=92.19  Aligned_cols=120  Identities=16%  Similarity=0.078  Sum_probs=104.2

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|++|.+.  .++.++++||.+|. ..+++++|+.+|++|.+.  ++++++++||.+|.. .|      ++
T Consensus        22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g------~~   93 (723)
T 4gyw_A           22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQ------DV   93 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CH
Confidence            34568999999999875  69999999999998 689999999999999876  589999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS  247 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~  247 (408)
                      ++|+++|++|.+.  +++.++++||.+|..    ..++++|+.+|++|.+.  .++.+..
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~  149 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYC  149 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHh
Confidence            9999999999885  789999999999976    67999999999999985  3455533

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.40  E-value=2.6e-06  Score=71.56  Aligned_cols=95  Identities=12%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ++++.+.+|..++ ..+++++|+.+|+++...  .++.+++.||.+|.. .|      ++++|+.+|++|...  .++.+
T Consensus        17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A           17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LG------LYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCcHH
Confidence            5678888999888 689999999999998876  488999999999965 34      889999999999875  68899


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+.||.+|..    ..++++|+.+|++|.+.
T Consensus        89 ~~~lg~~~~~----~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           89 PFHAAECHLQ----LGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            9999999976    67999999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.39  E-value=2.8e-05  Score=67.30  Aligned_cols=117  Identities=19%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.++.++...  .++.+.+.+|.++. ..++++.+..++.+|...  .++.+.+.+|.+|.. .|      +++
T Consensus        53 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g------~~~  124 (184)
T 3vtx_A           53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MG------EHD  124 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hC------Cch
Confidence            4457788888877554  57888888888887 678899999999998765  478999999999975 34      889


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                      +|+++|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.....+
T Consensus       125 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          125 KAIEAYEKTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHH
T ss_pred             hHHHHHHHHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCH
Confidence            999999999875  689999999999976    6799999999999998755443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.38  E-value=3.2e-06  Score=72.49  Aligned_cols=95  Identities=13%  Similarity=0.043  Sum_probs=78.6

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ++.+++.+|.+|+ ..+++++|+.+|++|.+.  .++.++++||.+|.. .|      ++.+|+.+|++|.+.  .++.+
T Consensus        10 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A           10 ESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SG------QHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCCCCHHH
Confidence            4567888888888 688899999999998876  478899999998865 34      788999999998875  67889


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++.||.+|..    ..++++|+.+|++|.+.
T Consensus        82 ~~~lg~~~~~----~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           82 WSRLGLARFD----MADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----ccCHHHHHHHHHHHHHh
Confidence            9999999976    67889999999998864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.38  E-value=1.2e-05  Score=72.30  Aligned_cols=115  Identities=12%  Similarity=0.012  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHc---CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          117 NWSESAHRFLKLCADA---GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~---G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ...++|+.+|+++.+.   .+..+.+++|.+|. ..+++++|+.+|++|.+..  ++.+++.||.+|.. .|      ++
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~------~~   92 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MK------NN   92 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TT------CH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cc------cH
Confidence            4468899999988875   57899999999998 6899999999999999874  78999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--CCH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393          192 RAGVALCARAAFL--GHI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA  243 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~  243 (408)
                      .+|+.+|+++.+.  .++       .+.+.+|.+|..    ..+.++|+.+|++|.+....
T Consensus        93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCC
Confidence            9999999999885  456       668999999976    68999999999999987655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.38  E-value=6.1e-06  Score=68.52  Aligned_cols=94  Identities=10%  Similarity=-0.041  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+.+|++|.+.  .++.+++++|.+|.. .|      ++
T Consensus        26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~   97 (126)
T 4gco_A           26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MR------EW   97 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CC------CH
Confidence            34568999999998765  68999999999998 689999999999999876  589999999999975 45      89


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      ++|+++|++|.+.  ++.++...|+.++
T Consensus        98 ~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           98 SKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999986  7899999999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.37  E-value=5.8e-06  Score=67.40  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +++.+.+|..|+ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++.+|+.+|++|.+.  .++.+.
T Consensus         4 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~   75 (126)
T 3upv_A            4 AEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LM------SFPEAIADCNKAIEKDPNFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCcHHHH
Confidence            567888998888 689999999999999876  478999999999975 34      889999999999875  678999


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +.+|.+|..    ..+.++|+.+|++|.+..
T Consensus        76 ~~lg~~~~~----~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           76 IRKATAQIA----VKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HhCHHHHHHHHHHHHHhC
Confidence            999999976    678999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.35  E-value=1.7e-05  Score=68.64  Aligned_cols=113  Identities=20%  Similarity=0.146  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++++.+.||.+|. ..+++++|+.+++++...  .++.+.+.+|.++... +      ++.
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~   90 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI-D------EKQ   90 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-T------CHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc-C------CHH
Confidence            3468999999998775  69999999999998 689999999999999766  4789999999999753 3      789


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++..++.++...  .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        91 ~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~  137 (184)
T 3vtx_A           91 AAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIK  137 (184)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhc
Confidence            999999999875  689999999999976    679999999999999853

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.33  E-value=2.4e-06  Score=73.91  Aligned_cols=112  Identities=18%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH-HHcCCCCCCCccCH--
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI-QFNGSGGSKNDKDL--  191 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~-y~~G~Gv~~~~~d~--  191 (408)
                      .++|+.+|+++.+.  .++.+.+.||.+|+ ..+++++|+.+|+++...  .++.+++.+|.+ |.. .|      ++  
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~------~~~~   97 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-AS------QHMT   97 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TT------TCCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cC------Ccch
Confidence            45677888877664  58999999999998 689999999999999875  589999999999 633 33      44  


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      .+|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Confidence            7999999999875  679999999999976    6899999999999998643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.30  E-value=3.9e-05  Score=61.15  Aligned_cols=111  Identities=19%  Similarity=0.233  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++...  .++.+.+.+|.+|.. .|      ++++
T Consensus        16 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~   87 (136)
T 2fo7_A           16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QG------DYDE   87 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CHHH
T ss_pred             cHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hc------CHHH
Confidence            467889999988764  57899999999988 578999999999999876  468899999999964 34      8999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |+.+|+++...  .++.+.+.+|.+|..    ..+.++|..+|+++.+.
T Consensus        88 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           88 AIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHcc
Confidence            99999999875  478899999999975    67999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.29  E-value=1.1e-05  Score=65.99  Aligned_cols=97  Identities=19%  Similarity=0.121  Sum_probs=84.4

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHI  207 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~  207 (408)
                      ..++.+.+.+|..|+ ..+++++|+.+|+++...  .++.+++++|.+|.. .|      ++.+|+.+|+++...  +++
T Consensus         6 ~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            6 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCchhH
Confidence            457889999999998 689999999999999876  478999999999975 34      889999999999875  688


Q ss_pred             HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          208 DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       208 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus        78 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           78 KAHFFLGQCQLE----MESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence            999999999976    67899999999999874

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.28  E-value=8.1e-06  Score=74.58  Aligned_cols=109  Identities=10%  Similarity=-0.114  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+|+++.+.  .++.+++.||.+|. ..+++++|+.+|++|.+.  .++.+++.||.+|.. .|      ++++
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g------~~~~  129 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG------RDKL  129 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHH
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hc------cHHH
Confidence            345566666655543  25566666666655 455666666666666553  245566666666543 23      5556


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      |+.+|+++.+.  .+......++.++..     .+.++|+.+|.++..
T Consensus       130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A          130 AQDDLLAFYQDDPNDPFRSLWLYLAEQK-----LDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHh
Confidence            66666666543  334444444443322     355566666655554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.25  E-value=1.5e-05  Score=73.46  Aligned_cols=119  Identities=13%  Similarity=-0.004  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHc-CCCCC
Q 015393          117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SHAQALYSLAVIQFN-GSGGS  185 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~-G~Gv~  185 (408)
                      ...++|+.+|+++.+.  ++   +.+.+.||.+|+ ..+++++|+.+|+++...     ..+.++|.+|.+|.. +....
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            3468899999988875  46   899999999998 689999999999999987     347899999999975 11111


Q ss_pred             CCccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          186 KNDKDLRAGVALCARAAFL--GHIDAL-----------------RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ....++.+|+.+|+++.+.  +++.+.                 +.+|.+|..    ..++++|+.+|+++.+.
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~  177 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAAVTYEAVFDA  177 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence            1233899999999999875  343333                 899999976    78999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.24  E-value=4.2e-05  Score=64.78  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|..+|+++.+.  .++.+.+.+|.+|. ..+++++|+++|+++...  .++.+.+.+|.+|.. .|      ++
T Consensus        55 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~  126 (186)
T 3as5_A           55 TGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LG------RF  126 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cC------cH
Confidence            34568899999988775  57899999999998 678999999999999876  588999999999965 34      88


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|..+|+++.+.
T Consensus       127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence            9999999999875  578999999999976    67999999999998763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.22  E-value=9.5e-06  Score=72.87  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHH----------------hHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYT----------------LGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI  177 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~----------------LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~  177 (408)
                      ..++|+.+|+++.+.  .++++.+.                ||.+|. ..+++++|+.+|++|.+.  .++.++++||.+
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   97 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACAEM   97 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            456777777777664  36677777                787777 577888888888887765  477888888888


Q ss_pred             HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      |.. .|      ++++|+.+|+++.+.  .++.+.+.||.+|.
T Consensus        98 ~~~-~g------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           98 QVC-RG------QEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHH-HT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHH-cC------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            754 23      777888888888764  57778888887764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.21  E-value=1.5e-05  Score=64.21  Aligned_cols=95  Identities=11%  Similarity=0.012  Sum_probs=60.6

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ++.+++.+|.+|+ ..+++++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+
T Consensus        15 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           15 LALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LL------EFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             HHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHhCCCchHH
Confidence            4556666666666 466667777777776654  356667777776643 23      666777777776654  45666


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        87 ~~~la~~~~~----~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           87 YTRKAAALEA----MKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHh
Confidence            7777776654    45667777777766654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.20  E-value=1e-05  Score=62.98  Aligned_cols=97  Identities=14%  Similarity=0.089  Sum_probs=80.9

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C--C
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G--H  206 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G--~  206 (408)
                      +++.+.+.+|.+|+ ..+++++|+.+|+++.+.  .++.+++++|.+|.. .|      ++++|+.+|+++.+.  .  +
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~   75 (112)
T 2kck_A            4 QNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LE------RYEEAVDCYNYVINVIEDEYN   75 (112)
T ss_dssp             SSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTSCCTTC
T ss_pred             CcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCcccch
Confidence            45677888999988 688999999999998876  478899999999965 33      788999999999886  4  7


Q ss_pred             HHHHHHHHHHHHcCCCcc-ccHHHHHHHHHHHHHcC
Q 015393          207 IDALRELGHCLQDGYGVR-QNIAEGRRFLVQANARE  241 (408)
Q Consensus       207 ~~A~~~Lg~~y~~G~Gv~-~d~~~A~~w~~kAA~~G  241 (408)
                      +.+.+.||.+|..    . .+.++|+.+|+++....
T Consensus        76 ~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           76 KDVWAAKADALRY----IEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence            8899999999965    5 78899999999887643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.19  E-value=1.2e-05  Score=66.21  Aligned_cols=91  Identities=15%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             HHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 015393          138 CYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALREL  213 (408)
Q Consensus       138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~L  213 (408)
                      .+.+|..++ ..+++++|+..|++|...  .++.+++.||.+|.. .|      ++.+|+..|++|.+.  .++.+.+.|
T Consensus        20 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~P~~~~~~~~l   91 (121)
T 1hxi_A           20 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NE------KDGLAIIALNHARMLDPKDIAVHAAL   91 (121)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            466777776 577888888888888765  488888888888864 34      778888888888875  578888888


Q ss_pred             HHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          214 GHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       214 g~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |.+|..    ..+.++|+.+|+++.+.
T Consensus        92 a~~~~~----~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           92 AVSHTN----EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHh
Confidence            888865    67788888888888764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.18  E-value=8.7e-05  Score=65.13  Aligned_cols=113  Identities=12%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      ....++|+.+|+++.+.  .++.+.+.+|.+|. .. +++++|+.+|+++.+.    .++.+++.+|.+|.. .|     
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----  127 (225)
T 2vq2_A           55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QG-----  127 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TT-----
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cC-----
Confidence            34467788888877664  47788888888887 56 7888888888888772    236788888888864 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       128 -~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          128 -QFGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             -CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence             778888888888764  567888888888865    66788888888888764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.17  E-value=6.2e-05  Score=66.09  Aligned_cols=111  Identities=13%  Similarity=0.001  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+++|+++.+..  ++.+++.+|.+|..-.|      ++.+|
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------~~~~A   96 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN------RPAES   96 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------CHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC------cHHHH
Confidence            45666666666553  45667777777766 4566777777777766543  56667777777654213      66677


Q ss_pred             HHHHHHHHhC----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|+++.+.    .+..+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A           97 MAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            7777777662    235666777777654    45667777777776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.16  E-value=1.1e-05  Score=82.32  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=99.1

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHc-CCCCCCC-ccC
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFN-GSGGSKN-DKD  190 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~-G~Gv~~~-~~d  190 (408)
                      +++.++|+.+|+++.+.  .++++++.||.+|+ ..+++++|+.+|++|.+.. ++.++++||.+|.. +.|.... ..+
T Consensus       116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~  194 (474)
T 4abn_A          116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH  194 (474)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence            33438999999988765  58999999999998 6899999999999998774 57899999999976 2221100 038


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-----CCCccccHHHHHHHHHHHHHc
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQD-----GYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~-----G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +++|+.+|++|.+.  .++.+++.||.+|..     |. -..++++|+.+|++|.+.
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHh
Confidence            89999999999875  689999999999964     11 227899999999999985

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.16  E-value=2.2e-05  Score=75.45  Aligned_cols=110  Identities=15%  Similarity=0.067  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          119 SESAHRFLKLCADAG----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .++|+.+|+++.+..    ++.++++||.+|. ..+++++|+.+|+++.+.  .++.++++||.+|.. .|      +++
T Consensus       193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~  264 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GD------RSE  264 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence            678999999988764    7899999999998 689999999999999876  589999999999976 44      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus       265 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          265 EAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            999999999875  679999999999976    67899999999999874

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.16  E-value=4.8e-05  Score=68.78  Aligned_cols=114  Identities=8%  Similarity=0.059  Sum_probs=93.4

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHcCCCCCCCcc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAI----SSHAQALYSLAVIQFNGSGGSKNDK  189 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~----~G~~~A~~~Lg~~y~~G~Gv~~~~~  189 (408)
                      ....++|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+++|+++..    ..++.+.+.+|.+|.. .|      
T Consensus        84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g------  155 (252)
T 2ho1_A           84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK------  155 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT------
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC------
Confidence            34568889999888765  57889999999988 67899999999999977    3467889999998865 34      


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus       156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPARQYYDLFAQGG  205 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            788999999998875  578899999999976    678999999999987643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.15  E-value=1.8e-05  Score=67.51  Aligned_cols=95  Identities=15%  Similarity=0.045  Sum_probs=78.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------------------CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------------------SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------------------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      +.+...+|..|+ ..+++.+|+.+|++|...                    .++.+++++|.+|.. .|      ++.+|
T Consensus        11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~------~~~~A   82 (162)
T 3rkv_A           11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IG------DLHEA   82 (162)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HT------CHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cC------cHHHH
Confidence            456778888887 688999999999998875                    356789999999864 34      88899


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +.+|.+|.+.  .++.+++.+|.+|..    ..++++|+.+|++|....
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcC
Confidence            9999999875  688999999999976    678999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.15  E-value=2.4e-05  Score=70.29  Aligned_cols=100  Identities=12%  Similarity=-0.025  Sum_probs=87.2

Q ss_pred             HHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--
Q 015393          130 ADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--  204 (408)
Q Consensus       130 Ae~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--  204 (408)
                      +...++++.+++|.+|+ ..+++++|+.+|+++.+.   .+..+.+++|.+|.. .|      ++++|+.+|++|.+.  
T Consensus         2 a~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            2 AQTTDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IK------KYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             --CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTTC
T ss_pred             ccccCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hh------cHHHHHHHHHHHHHhCc
Confidence            34568899999999998 689999999999999986   478899999999975 34      899999999999987  


Q ss_pred             CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          205 GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       205 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .++.+++.||.+|..    ..+.++|+.+|++|.+..
T Consensus        74 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           74 NLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             SHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHC
Confidence            478899999999976    689999999999999853

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=3.6e-05  Score=63.28  Aligned_cols=96  Identities=16%  Similarity=0.070  Sum_probs=77.6

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--C
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH-----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--G  205 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~-----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G  205 (408)
                      .+..+++.+|..|+ ..+++++|+.+|+++.+...     ..+++++|.+|.. .|      ++++|+.+|+++.+.  .
T Consensus        26 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           26 SSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LE------DYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-Hc------cHHHHHHHHHHHHhhCcc
Confidence            46777888888887 67889999999999887642     7888888988865 33      788999999988765  5


Q ss_pred             CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          206 HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       206 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        98 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           98 DVKALYRRSQALEK----LGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence            78888999998866    67888999999988775

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.12  E-value=3.8e-05  Score=60.14  Aligned_cols=94  Identities=11%  Similarity=0.021  Sum_probs=64.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+++.+|..++ ..+++++|+.+|+++...  .++.+.+.+|.+|.. .|      ++.+|+.+|+++.+.  .++.+.
T Consensus         4 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~   75 (118)
T 1elw_A            4 VNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KG------DYQKAYEDGCKTVDLKPDWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHhCcccHHHH
Confidence            456677777766 567777777777777654  367777777777754 23      677777777777664  456777


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        76 ~~~a~~~~~----~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           76 SRKAAALEF----LNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH----HhhHHHHHHHHHHHHHc
Confidence            777777754    45777777777777765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.11  E-value=2e-05  Score=63.72  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcH---HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC--
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHA---QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH--  206 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~---~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~--  206 (408)
                      ++.|.+|..++ ..+++++|+.+|+++...  +++   .+.+.+|.+|.. .|      ++.+|+.+|+++...  .+  
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~~~~~~p~~~~   74 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TR------NFQLAEAQFRDLVSRYPTHDK   74 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHHCCCCcc
Confidence            46788888887 678999999999998874  355   789999998865 34      888999999998875  45  


Q ss_pred             -HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 -IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 -~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       +.+++.||.+|..    ..+.++|+.+|+++.+.
T Consensus        75 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           75 AAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence             7889999999975    67899999999998875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.11  E-value=2.2e-05  Score=62.77  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC--C----
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG--H----  206 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~----  206 (408)
                      +.+++.+|.+|+ ..+++++|+.+|+++...  .++.+++++|.+|.. .|      ++.+|+.+|+++.+..  +    
T Consensus         4 ~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KG------DYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHhhccccchhH
Confidence            467889999988 689999999999999876  478999999999964 33      8999999999998752  3    


Q ss_pred             ---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          207 ---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       207 ---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                         +.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        76 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           76 RQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence               8899999999976    679999999999999864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=6.3e-05  Score=67.55  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=84.2

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ++.+.+.+|.+|+ ..+++++|+.+|+++.+.  .++.+.++||.+|.. .|      ++.+|+.+|+++.+.  .++.+
T Consensus       138 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~  209 (258)
T 3uq3_A          138 KAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LM------SFPEAIADCNKAIEKDPNFVRA  209 (258)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCHHHHHH
Confidence            5678899999998 679999999999999876  478999999999975 34      899999999999875  67899


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++.+|.+|..    ..+.++|+.+|++|.+..
T Consensus       210 ~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          210 YIRKATAQIA----VKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHhC
Confidence            9999999976    689999999999998754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.10  E-value=4.8e-05  Score=68.76  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+++|+++.+.  .++.+++.+|.+|.. .|      ++++|
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g------~~~~A  124 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QK------RYEEA  124 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-Hh------HHHHH
Confidence            46788888887764  58999999999998 689999999999999876  478999999999975 34      89999


Q ss_pred             HHHHHHHHh--C--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          195 VALCARAAF--L--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       195 ~~~~~kAA~--~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +++|+++..  .  .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          125 YQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            999999987  3  467899999999976    678999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.09  E-value=2.7e-05  Score=73.64  Aligned_cols=111  Identities=13%  Similarity=-0.049  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCC
Q 015393          119 SESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGS  182 (408)
Q Consensus       119 ~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~  182 (408)
                      .++|+..|.+|.+.    |+    +.++.++|.+|. ..+++++|+.+|++|.+.    |+    +.++.+||.+|..-.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l  131 (292)
T 1qqe_A           53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (292)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence            47788888888775    55    468899999998 678999999999999865    44    568999999997633


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |      ++++|+.+|++|.+.    ++    ..++.+||.+|..    ..++++|+.+|++|.+.
T Consensus       132 g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          132 H------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             c------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            5      899999999999874    33    4578899999976    67999999999999984

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.09  E-value=1.5e-05  Score=79.47  Aligned_cols=115  Identities=3%  Similarity=-0.068  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+|+++.+.  .++.+++++|.+|. ..+++++|+..|++|.+.  .++.+++++|.+|.. .|      ++++|
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g------~~~eA  219 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FK------LWDNE  219 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CCTTH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cC------ChHHH
Confidence            55666666665543  35666666666665 345566666666666554  356666666666643 22      34456


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHc-CCCcccc-HHHHHHHHHHHHHcC
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQD-GYGVRQN-IAEGRRFLVQANARE  241 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~Gv~~d-~~~A~~w~~kAA~~G  241 (408)
                      +.+|++|.+.  .+..+.+++|.+|.. +.-...- +..++.+|++|....
T Consensus       220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~  270 (382)
T 2h6f_A          220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  270 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence            6666666554  456666666666655 2111111 122346666666653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.08  E-value=5.4e-05  Score=68.71  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------C--cHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------S--HAQALYSLA  175 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G--~~~A~~~Lg  175 (408)
                      ....++|+.+|+++.+.          ....++++||.+|. ..+++++|+.+|+++.+.        .  ...++++||
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  176 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA  176 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            44578899999988775          34678999999998 689999999999999876        2  366899999


Q ss_pred             HHHHcCCCCCCCccCHHHHHHHHHHHHhC------------------------------------------------C--
Q 015393          176 VIQFNGSGGSKNDKDLRAGVALCARAAFL------------------------------------------------G--  205 (408)
Q Consensus       176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~------------------------------------------------G--  205 (408)
                      .+|.. .|      ++++|+.+|+++.+.                                                .  
T Consensus       177 ~~~~~-~g------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T 3edt_B          177 SCYLK-QG------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP  249 (283)
T ss_dssp             HHHHH-HT------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred             HHHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence            99964 34      889999999999863                                                2  


Q ss_pred             -CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          206 -HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       206 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .+.+.+.||.+|..    ..+.++|..+|++|.+.
T Consensus       250 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRR----QGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence             24478889999966    67899999999998763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.08  E-value=1.9e-05  Score=80.50  Aligned_cols=118  Identities=17%  Similarity=0.049  Sum_probs=98.6

Q ss_pred             cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhcc---------CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC--
Q 015393          116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCL---------QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG--  181 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~---------~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--  181 (408)
                      ....++|+.+|+++.+.. +..++++||.+|. ..         +++++|+.+|++|.+.  .++.++++||.+|..-  
T Consensus       150 ~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             HTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            345789999999998754 5799999999998 45         8899999999999876  5899999999999642  


Q ss_pred             -CCCCCCccCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          182 -SGGSKNDKDLRAGVALCARAAFL-----GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       182 -~Gv~~~~~d~~kA~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .|.  ...++++|+.+|++|.+.     .++.++++||.+|..    ..++++|+.+|++|.+.
T Consensus       229 ~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          229 NTGQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HTTC--CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             hhcc--ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence             110  123899999999999874     689999999999976    67999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.08  E-value=4.2e-06  Score=71.45  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             HhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393          140 TLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGH  215 (408)
Q Consensus       140 ~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~  215 (408)
                      .||.+|. ..++.++|+..|++|....  ++.+.|.||.+|.. .|      ++++|+++|++|.+.  .++.+.+.||.
T Consensus         2 ~LG~~~~-~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~------~~~~A~~~~~~al~~~p~~~~a~~~lg~   73 (150)
T 4ga2_A            2 PLGSMRR-SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AK------EYDLAKKYICTYINVQERDPKAHRFLGL   73 (150)
T ss_dssp             -----CC-CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhHHHHH-HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4788887 6789999999999998763  56688999999975 34      899999999999876  68999999999


Q ss_pred             HHHcCCCccccHHHHHHHHHHHHHcC--CHHHHhh
Q 015393          216 CLQDGYGVRQNIAEGRRFLVQANARE--LAAVLSS  248 (408)
Q Consensus       216 ~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~~  248 (408)
                      +|..    ..+.++|+.+|++|.+..  ++.+...
T Consensus        74 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~  104 (150)
T 4ga2_A           74 LYEL----EENTDKAVECYRRSVELNPTQKDLVLK  104 (150)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHH----cCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9976    689999999999999854  4555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.08  E-value=2.3e-05  Score=81.16  Aligned_cols=118  Identities=18%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.++++||.+|. ..+++++|+++|++|.+.  .++.++++||.+|.. .|      ++
T Consensus        36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~  107 (568)
T 2vsy_A           36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AG------QA  107 (568)
T ss_dssp             HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC------CH
Confidence            34568999999998875  58999999999998 689999999999999876  589999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ++|+++|+++.+.  .++.+.++||.+|.. .+--.+.++|..+|+++.+.+.
T Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhcCC
Confidence            9999999999875  689999999999976 1112799999999999998754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.08  E-value=5.3e-05  Score=78.35  Aligned_cols=92  Identities=15%  Similarity=0.013  Sum_probs=68.6

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcC--CCCCCCcc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNG--SGGSKNDK  189 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~Gv~~~~~  189 (408)
                      ....++|+.+|+++.+.  .++.+.++||.+|. ..+++++|+++|++|.+.  .++.+.++||.+|..-  +|      
T Consensus        70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g------  142 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR------  142 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT------
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc------
Confidence            34467888888877664  57888888888887 578888888888888765  4778888888888653  14      


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393          190 DLRAGVALCARAAFL--GHIDALRELG  214 (408)
Q Consensus       190 d~~kA~~~~~kAA~~--G~~~A~~~Lg  214 (408)
                      +.++|.++|+++.+.  .+..+.+.|+
T Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            788888888888775  3555666665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.07  E-value=5.4e-05  Score=67.63  Aligned_cols=113  Identities=19%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             cCCHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+..  ++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~  175 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EG------ML  175 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CC
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cC------CH
Confidence            345678888888877654  7888888998887 678899999999988776  478888889988864 33      67


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHcc
Confidence            7899999988765  578888889998865    67888999999988775

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.07  E-value=0.00013  Score=61.21  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+.+|+++...  .++.+++++|.+|.. .|      ++.
T Consensus        27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~------~~~   98 (166)
T 1a17_A           27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFR   98 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hc------cHH
Confidence            3467899999988765  58999999999998 689999999999999876  578999999999975 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHH--HHcCCCccccHHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHC--LQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|+.+|+++.+.  .+..+...++.+  +..    ..+.++|+.+|.++..
T Consensus        99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           99 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchHH
Confidence            999999999875  577777555554  543    5788999999988754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.06  E-value=6.3e-05  Score=68.67  Aligned_cols=113  Identities=9%  Similarity=0.020  Sum_probs=93.6

Q ss_pred             cCCHHHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc
Q 015393          116 NNWSESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      ....++|+.+|+++.+..     ...+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+++.||.+|.. .|     
T Consensus        50 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~-----  122 (272)
T 3u4t_A           50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KG-----  122 (272)
T ss_dssp             TTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT-----
T ss_pred             HhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cc-----
Confidence            344688999999888743     2456889999988 678999999999999876  578899999999975 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHH-HHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          189 KDLRAGVALCARAAFL--GHIDALRELG-HCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg-~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                       ++++|+.+|+++.+.  .++.+.+.|| .+|..+     ++++|+.+|+++.+..
T Consensus       123 -~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A          123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-----EYVKADSSFVKVLELK  172 (272)
T ss_dssp             -CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHS
T ss_pred             -CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhC
Confidence             889999999999875  6789999999 888775     9999999999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.06  E-value=9.6e-05  Score=65.95  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+..  ++.+.+.+|.+|.. .|      ++
T Consensus        70 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~  141 (243)
T 2q7f_A           70 VNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LE------QP  141 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TS------CH
T ss_pred             cCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hc------cH
Confidence            34568899999988775  48899999999998 6899999999999998764  88999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++....
T Consensus       142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          142 KLALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            9999999999875  679999999999976    678899999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.06  E-value=5.7e-05  Score=73.60  Aligned_cols=113  Identities=10%  Similarity=0.045  Sum_probs=93.2

Q ss_pred             cCCHHHHHHHHHHHHHc---------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA---------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQ  178 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~---------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y  178 (408)
                      ....++|+.++++|.+.         +...+.++||.+|. ..+++++|+.+|++|.+.    +    ...+.++||.+|
T Consensus       156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK  234 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            34568899999888753         33568999999998 689999999999999855    3    235899999999


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAF--------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~--------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .. .|      ++++|+.+|++|.+        .+.+.+.+.||.+|..    ..+.++|..+|++|.+.
T Consensus       235 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          235 NS-QS------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HH-CC------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            75 34      89999999999988        3457799999999976    67999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.06  E-value=7.6e-05  Score=58.88  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=61.2

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+++.+|.+|. ..+++++|+.+|+++...  .++.+++.+|.+|.. .|      ++++|+.+|+++.+.  .++.+.
T Consensus         9 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCCccHHHH
Confidence            456666776666 466777777777776654  356667777777654 23      666777777777654  456667


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.||.+|..    ..+.++|+.+|+++.+.
T Consensus        81 ~~la~~~~~----~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           81 YNLGNAYYK----QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence            777777654    45677777777776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.06  E-value=1.3e-05  Score=85.69  Aligned_cols=114  Identities=12%  Similarity=0.003  Sum_probs=97.7

Q ss_pred             cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+  ..++.+++++|.+|. ..+++++|+..|++|.+.  +++.++++||.+|.. .|      ++
T Consensus       446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g------~~  517 (681)
T 2pzi_A          446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AG------NT  517 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HT------CC
T ss_pred             cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cC------Ch
Confidence            3456889999998875  579999999999998 689999999999999876  689999999999965 23      55


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ++ +.+|++|.+.  .++.++++||.+|..    ..+.++|+.+|++|.+...
T Consensus       518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          518 DE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             CT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTST
T ss_pred             HH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCc
Confidence            57 8899999875  689999999999976    7799999999999987643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.05  E-value=0.0001  Score=68.76  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHcCCCCC
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAI-----------SSHAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~-----------~G~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++..           ..++.++++||.+|.. .|  
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g--  250 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-LK--  250 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-TT--
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-hc--
Confidence            45566666655543  35556666666655 45566666666666655           2334566666666643 22  


Q ss_pred             CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          186 KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                          ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus       251 ----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          251 ----KYAEALDYHRQALVLIPQNASTYSAIGYIHSL----MGNFENAVDYFHTALGL  299 (330)
T ss_dssp             ----CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTT
T ss_pred             ----CHHHHHHHHHHHHhhCccchHHHHHHHHHHHH----hccHHHHHHHHHHHHcc
Confidence                555666666666543  355566666666644    45566666666666543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.03  E-value=6.7e-05  Score=62.92  Aligned_cols=96  Identities=11%  Similarity=-0.051  Sum_probs=83.6

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      .+.+.+.+|..|+ ..+++++|+.+|+++.+.  .++.+++++|.+|.. .|      ++.+|+.+|+++.+.  .++.+
T Consensus        12 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           12 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TE------CYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcccHHH
Confidence            3567888999988 689999999999999876  479999999999975 34      899999999999875  68999


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        84 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           84 YYRRAASNMA----LGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            9999999976    679999999999999863

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.00014  Score=65.19  Aligned_cols=114  Identities=12%  Similarity=0.019  Sum_probs=95.0

Q ss_pred             cCCHHHHHHHHHHHHHcC--C-------HHHHHHhHHHHhhccCCHHHHHHHHHHHHh----------------------
Q 015393          116 NNWSESAHRFLKLCADAG--N-------VEACYTLGMIRFYCLQNRGSGASLMAKAAI----------------------  164 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G--~-------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~----------------------  164 (408)
                      ....++|+.+|+++.+..  +       +.+++.||.+|. ..+++++|+.+|+++..                      
T Consensus        51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  129 (258)
T 3uq3_A           51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE  129 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence            345688999999887753  2       789999999998 68899999999999988                      


Q ss_pred             ----c--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHH
Q 015393          165 ----S--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQ  236 (408)
Q Consensus       165 ----~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~k  236 (408)
                          .  .++.+++.+|.+|.. .|      ++.+|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~  198 (258)
T 3uq3_A          130 AEAYVNPEKAEEARLEGKEYFT-KS------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             HHHHcCcchHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence                3  356788999999975 34      899999999999875  578999999999976    6799999999999


Q ss_pred             HHHcC
Q 015393          237 ANARE  241 (408)
Q Consensus       237 AA~~G  241 (408)
                      +.+..
T Consensus       199 al~~~  203 (258)
T 3uq3_A          199 AIEKD  203 (258)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.03  E-value=7.1e-05  Score=59.55  Aligned_cols=94  Identities=19%  Similarity=0.165  Sum_probs=51.9

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+.+.+|.+|+ ..+++++|+.+|+++...  .++.+.+.+|.+|.. .|      ++.+|+.+|+++...  .++.+.
T Consensus        12 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           12 AERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LG------NYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hh------chHHHHHHHHHHHhcCccCHHHH
Confidence            445555555555 455666666666665543  345556666666543 22      555666666666543  345566


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|.+|..    ..+.++|+.+|+++...
T Consensus        84 ~~~~~~~~~----~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           84 GRMGLALSS----LNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence            666666544    34566666666665553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.03  E-value=8.5e-05  Score=70.84  Aligned_cols=110  Identities=15%  Similarity=0.059  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          119 SESAHRFLKLCADAG----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .++|+.+|+++.+..    ++.+.+.||.+|. ..+++++|+.+|+++...  .++.++++||.+|.. .|      ++.
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g------~~~  268 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN------QSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC------CHH
Confidence            578999999887754    6789999999998 689999999999999875  478999999999975 44      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus       269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          269 EAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            999999999875  689999999999976    78999999999999873

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.03  E-value=1.7e-05  Score=75.56  Aligned_cols=109  Identities=22%  Similarity=0.156  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393          118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG  181 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G  181 (408)
                      ..++|+..|.++++.    |+    ..++.++|.+|. ..+++++|+.+|++|.+.    |+    ..++.+||.+|.. 
T Consensus        51 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-  128 (307)
T 2ifu_A           51 QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-  128 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence            456777777777664    33    457889999988 578999999999999765    33    5688999999976 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       |      ++++|+.+|++|.+.    |+    ..++.+||.+|..    ..++++|+.+|++|.+
T Consensus       129 -g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          129 -L------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKS  183 (307)
T ss_dssp             -T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             -C------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence             6      899999999999874    43    5688899999976    6799999999999987

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.02  E-value=5.1e-05  Score=68.88  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLAV  176 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg~  176 (408)
                      ...++|+.+|+++.+.          ..+.++++||.+|. ..+++++|+.+|++|.+.          ....++++||.
T Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3467888888888765          24568999999998 789999999999999876          35778999999


Q ss_pred             HHHcCCCCCCCccCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          177 IQFNGSGGSKNDKDLRAGVALCARAAFL--------G--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--------G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.. .|      ++++|+.+|+++.+.        .  ...+++.||.+|..    ..+.++|+.+|+++.+.
T Consensus       136 ~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          136 LCQN-QG------KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHT-TT------CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            9974 34      899999999999875        1  35688999999976    67999999999999874

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.02  E-value=2e-06  Score=87.47  Aligned_cols=48  Identities=27%  Similarity=0.657  Sum_probs=40.2

Q ss_pred             CCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393          327 LRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW  380 (408)
Q Consensus       327 ~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~  380 (408)
                      ...|.  .|++..   ..+.+|++|+.+.|||++||+.||+ .||..|..+..+
T Consensus        49 ~~~C~--~C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~~   96 (433)
T 3qww_A           49 GHHCE--CCFARK---EGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVVL   96 (433)
T ss_dssp             TTBCT--TTCCBC---SSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHHS
T ss_pred             CCcCC--cccccC---CCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHHh
Confidence            46888  565542   3578999999999999999999999 699999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.01  E-value=6.4e-05  Score=63.63  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~   94 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQ------KYDL   94 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc------CHHH
Confidence            457888888877654  68999999999998 689999999999999876  578999999999965 23      8899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |.++|+++...  .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A           95 AVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcC
Confidence            99999999875  688999999999976    679999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.01  E-value=6.6e-05  Score=64.72  Aligned_cols=84  Identities=14%  Similarity=0.018  Sum_probs=73.2

Q ss_pred             hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .....++|+.+|+++.+.  .++.++++||.+|. ..+++++|+.+|++|...  +++.++++||.+|.. .|      +
T Consensus        48 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg------~  119 (151)
T 3gyz_A           48 NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LK------A  119 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TT------C
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------C
Confidence            344578999999988765  69999999999998 789999999999999876  589999999999975 45      8


Q ss_pred             HHHHHHHHHHHHhCCC
Q 015393          191 LRAGVALCARAAFLGH  206 (408)
Q Consensus       191 ~~kA~~~~~kAA~~G~  206 (408)
                      +++|+.+|++|.+...
T Consensus       120 ~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          120 PLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            9999999999998643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.99  E-value=2.2e-06  Score=86.92  Aligned_cols=50  Identities=30%  Similarity=0.676  Sum_probs=40.9

Q ss_pred             CCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhhc
Q 015393          326 GLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERWL  381 (408)
Q Consensus       326 ~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~~  381 (408)
                      ....|.  .|++..   ..+.+|++|+.+.|||++||+.||+ .||.+|..+..+.
T Consensus        46 ~~~~C~--~C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~   95 (429)
T 3qwp_A           46 RGVVCD--RCLLGK---EKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKSCK   95 (429)
T ss_dssp             BTTBCT--TTCCBC---SSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHHTT
T ss_pred             CCCcCc--CCCCcC---CCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHhcC
Confidence            346788  555432   2568999999999999999999999 6999999888763

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.98  E-value=6.9e-05  Score=68.37  Aligned_cols=113  Identities=9%  Similarity=0.040  Sum_probs=97.1

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      ....++|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+.+|+++.+..     ...+++.+|.+|.. .|     
T Consensus        16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~-~~-----   88 (272)
T 3u4t_A           16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK-KG-----   88 (272)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH-TT-----
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-cc-----
Confidence            34568899999988775  47889999999988 6899999999999999843     25568999999975 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          189 KDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       ++.+|+.+|+++.+.  .++.+++.||.+|..    ..++++|+.+|++|.+.
T Consensus        89 -~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           89 -QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             -CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCS
T ss_pred             -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhc
Confidence             899999999999885  688999999999976    77999999999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.97  E-value=0.00011  Score=67.98  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=90.6

Q ss_pred             cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc------C----cHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS------S----HAQALYSLA  175 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~------G----~~~A~~~Lg  175 (408)
                      ....++|+.+|+++.+.          ....+.++||.+|. ..+++++|+++|+++.+.      +    .+.+.+.||
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  202 (311)
T 3nf1_A          124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA  202 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34578899999988774          24567889999988 689999999999999876      2    356788999


Q ss_pred             HHHHcCCCCCCCccCHHHHHHHHHHHHhC---------------------------------------------------
Q 015393          176 VIQFNGSGGSKNDKDLRAGVALCARAAFL---------------------------------------------------  204 (408)
Q Consensus       176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---------------------------------------------------  204 (408)
                      .+|.. .|      ++++|+.+|+++.+.                                                   
T Consensus       203 ~~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  275 (311)
T 3nf1_A          203 SCYLK-QG------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP  275 (311)
T ss_dssp             HHHHH-HT------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred             HHHHH-cC------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence            99864 34      889999999999862                                                   


Q ss_pred             CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          205 GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       205 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ..+.+++.||.+|..    ..+.++|+.+|++|.+.
T Consensus       276 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          276 TVTTTLKNLGALYRR----QGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            245678889999976    68999999999998763

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.97  E-value=8.1e-05  Score=70.24  Aligned_cols=96  Identities=19%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      .++.+.+.+|..|+ ..+++++|+.+|++|...  .++.+++++|.+|.. .|      ++.+|+.+|++|.+.  +++.
T Consensus         2 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~------~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            2 PSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSCTTCHH
T ss_pred             hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCCHH
Confidence            35678888888887 678888888888888765  478888888888864 34      788888888888875  6788


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus        74 ~~~~lg~~~~~----~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           74 AHFFLGQCQLE----MESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            88888888875    56888888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.96  E-value=4.8e-05  Score=74.12  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=94.0

Q ss_pred             cCCHHHHHHHHHHHHHc----C----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----G----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQ  178 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y  178 (408)
                      ....++|+.+|++|.+.    +    .+.+.++||.+|. ..+++.+|+.+|++|.+.         +.+.++++||.+|
T Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            44578999999999875    3    4578999999998 689999999999999854         3467899999999


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAFL----GHI----DALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .. .|      ++++|+.+|++|.+.    ++.    .+.++||.+|..    ..+.++|+.+|++|.+
T Consensus       195 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          195 LD-LK------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HH-hc------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            75 34      899999999999864    433    489999999976    6799999999999998

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.96  E-value=7.7e-05  Score=66.82  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=87.1

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHH----------------HHHHHHcCCCCCCCccCHHHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYS----------------LAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~----------------Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      +++..+..|..++ ..+++++|+.+|+++.+..  ++.+.+.                ||.+|.. .|      ++++|+
T Consensus         3 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g------~~~~A~   74 (208)
T 3urz_A            3 SVDEMLQKVSAAI-EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-NR------NYDKAY   74 (208)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-CC------CHHHHH
Confidence            5677888898888 6899999999999998874  7888999                9999975 44      899999


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHHHh
Q 015393          196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAVLS  247 (408)
Q Consensus       196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~  247 (408)
                      .+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+..  ++.+..
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~  126 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANI  126 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            999999986  689999999999976    789999999999999853  444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.95  E-value=8.2e-05  Score=65.59  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=61.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcH----------------HHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHA----------------QALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~----------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      +.+.+.+|..|+ ..+++++|+.+|++|...  .++                .+++++|.+|.. .|      ++.+|+.
T Consensus        38 ~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~  109 (198)
T 2fbn_A           38 AFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NK------DYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hc------CHHHHHH
Confidence            345566666666 566777777777777653  222                667777777754 23      6677777


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|++|.+.
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence            77777654  466777777777754    56677777777777654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=0.00019  Score=69.58  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          120 ESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      ++|+.+|+++.+.  .++.++++||.+|. ..+++++|+.+|+++.+.  .++.+.++||.+|.. .|      ++++|+
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~  325 (388)
T 1w3b_A          254 DLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QG------NIEEAV  325 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cC------CHHHHH
Confidence            4444444444432  23444444444444 334444444444444433  244444444444432 22      444455


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+
T Consensus       326 ~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          326 RLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            555544443  334444445544433    3344445555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.95  E-value=0.0002  Score=68.62  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHH----------HHHHHHHcCCC
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALY----------SLAVIQFNGSG  183 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~----------~Lg~~y~~G~G  183 (408)
                      ..++|+.+|+++.+.  .++.+++.||.+|. ..+++++|+.+|+++.+..  +..+.+          .||.+|.. .|
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~-~g  191 (365)
T 4eqf_A          114 NEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD-SS  191 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C-CH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh-hh
Confidence            345566666655543  35566666666655 4556666666666665543  111222          22444421 22


Q ss_pred             CCCCccCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          184 GSKNDKDLRAGVALCARAAFLG----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       184 v~~~~~d~~kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                            ++++|+.+|+++.+..    ++.+++.||.+|..    ..++++|+.+|+++.+..
T Consensus       192 ------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~  243 (365)
T 4eqf_A          192 ------VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----SGEFNRAIDAFNAALTVR  243 (365)
T ss_dssp             ------HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             ------hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence                  6777777777777642    78899999999965    678999999999998753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.95  E-value=0.00012  Score=68.81  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHc
Q 015393          118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQFN  180 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~  180 (408)
                      ..++|+.+|+++.+.    ++    ..+.++||.+|. ..+++++|+.+|++|.+.         ..+.++++||.+|..
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            468999999999873    33    447899999998 688999999999999841         234588999999975


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          181 GSGGSKNDKDLRAGVALCARAAFL----G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~~----G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       .|      ++++|+.+|++|.+.    +    .+.+++++|.+|..   ..++.++|..+|++|..
T Consensus       209 -~~------~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          209 -DS------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK---LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred             -Hh------HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHH
Confidence             34      899999999999763    2    27899999999975   22357999999999985

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.94  E-value=0.00011  Score=59.05  Aligned_cols=92  Identities=9%  Similarity=-0.031  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+.+++|.+|.. .|      ++++|
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~------~~~~A  103 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MK------DYTKA  103 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-Hh------hHHHH
Confidence            47888999988765  48999999999998 689999999999999876  478999999999975 34      89999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      +.+|+++.+.  .+..+.+.|+.+|.
T Consensus       104 ~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A          104 MDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999875  56789999998885

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.94  E-value=0.00019  Score=66.86  Aligned_cols=110  Identities=16%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+|+++.+.  .+..+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+++.+|.+|.. .|      ++++|
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~------~~~~A  212 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NG------EWKTA  212 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cc------cHHHH
Confidence            45666666666553  34566666666666 456777777777777655  356677777777754 23      67777


Q ss_pred             HHHHHHHHh-----------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAF-----------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~-----------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|+++.+           ..++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhh
Confidence            777777766           3445677777777754    56777888888887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.94  E-value=0.00019  Score=66.80  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|+.+++++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A  225 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GN------RPQEA  225 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHH
Confidence            57899999988765  47899999999998 689999999999999876  478999999999976 44      89999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSN----MSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Confidence            9999999875  578999999999976    67999999999999874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.93  E-value=5.4e-05  Score=66.82  Aligned_cols=93  Identities=8%  Similarity=0.015  Sum_probs=81.6

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      ....|++|..|+ ..+++++|+.+|+++.+ .++.+++++|.+|.. .|      ++.+|+.+|++|...  .++.+++.
T Consensus         6 ~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~   76 (213)
T 1hh8_A            6 AISLWNEGVLAA-DKKDWKGALDAFSAVQD-PHSRICFNIGCMYTI-LK------NMTEAEKAFTRSINRDKHLAVAYFQ   76 (213)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCccchHHHHH
Confidence            346788999988 68999999999999974 489999999999975 34      899999999999875  68999999


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.+|..    ..+.++|+.+|++|.+.
T Consensus        77 lg~~~~~----~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           77 RGMLYYQ----TEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHH----cccHHHHHHHHHHHHHh
Confidence            9999976    67999999999999884

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.92  E-value=0.00016  Score=70.17  Aligned_cols=111  Identities=14%  Similarity=0.063  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHHHcC--C---------------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADAG--N---------------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI  177 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~---------------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~  177 (408)
                      ...++|+.+|+++.+..  +               ..++++||.+|+ ..+++++|+.+|++|.+.  .++.+++++|.+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34688999999888754  4               589999999998 689999999999999886  489999999999


Q ss_pred             HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHH-HHHHHHHHH
Q 015393          178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEG-RRFLVQANA  239 (408)
Q Consensus       178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~kAA~  239 (408)
                      |.. .|      ++++|+.+|++|.+.  .+..+.+.||.+|..    ..+..+| ...|++...
T Consensus       240 ~~~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          240 HLA-VN------DFELARADFQKVLQLYPNNKAAKTQLAVCQQR----IRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHH-TT------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHH-CC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            975 44      899999999999876  689999999999965    4566666 445555543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.92  E-value=7.5e-05  Score=56.32  Aligned_cols=77  Identities=25%  Similarity=0.344  Sum_probs=67.1

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ++.+++.+|.+|+ ..+++++|+.+|++|.+.  .++.++++||.+|.. .|      ++++|+.+|+++.+.  +++.+
T Consensus         8 ~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A            8 SAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCHHH
Confidence            4678899999988 688999999999999876  588999999999975 34      889999999999876  68999


Q ss_pred             HHHHHHHHH
Q 015393          210 LRELGHCLQ  218 (408)
Q Consensus       210 ~~~Lg~~y~  218 (408)
                      .+.||.+|.
T Consensus        80 ~~~l~~~~~   88 (91)
T 1na3_A           80 KQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999885

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.91  E-value=0.00017  Score=62.62  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHH--------cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C-----cHHHHHHHHHHHHc
Q 015393          118 WSESAHRFLKLCAD--------AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S-----HAQALYSLAVIQFN  180 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--------~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G-----~~~A~~~Lg~~y~~  180 (408)
                      ..++|+.+++++.+        .....+.++||.+|. ..+++++|+.+|++|.+.    |     ...++++||.+|..
T Consensus        41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  119 (203)
T 3gw4_A           41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH  119 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            45778888887766        234578899999998 689999999999999876    3     25678999999975


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHh----CCCHH----HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          181 GSGGSKNDKDLRAGVALCARAAF----LGHID----ALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~----~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       .|      ++++|..+|++|.+    .++..    +...||.+|..    ..+.++|+.+|++|.+
T Consensus       120 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          120 -FG------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             -HT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             -hC------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence             44      89999999999974    35544    46889999976    6799999999999986

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.91  E-value=5.6e-05  Score=75.28  Aligned_cols=111  Identities=12%  Similarity=-0.007  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccC-CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQ-NRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~-d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ..++|+.+|+++.+.  .++.+++++|.+|.. .+ ++++|+.+|++|...  .++.+++++|.+|.. .|      ++.
T Consensus       112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g------~~~  183 (382)
T 2h6f_A          112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LR------DPS  183 (382)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CCT
T ss_pred             ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cc------CHH
Confidence            457888888888765  688999999999884 45 599999999999876  488999999999864 34      667


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+..|++|.+.  .+..+++++|.+|..    ..++++|+.+|++|.+.
T Consensus       184 eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          184 QELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Confidence            899999999875  689999999999976    45778899999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.90  E-value=0.00012  Score=62.36  Aligned_cols=93  Identities=10%  Similarity=-0.035  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.++++||.+|+ ..+++++|+.+|++|.+.  .++.++++||.+|.. .|      +++
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~   96 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MA------DYK   96 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------CHH
Confidence            3468899999988875  58999999999998 689999999999999876  589999999999975 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      +|+.+|+++.+.  .+..+.+.++...
T Consensus        97 ~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           97 GAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            999999999875  5566666665544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00018  Score=58.20  Aligned_cols=93  Identities=9%  Similarity=-0.109  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+++|.+|+ ..+++++|+.+|++|.+.  .++.+++++|.+|.. .|      +++
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~------~~~   89 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VK------EYA   89 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-Hh------CHH
Confidence            3468899999988775  58999999999998 689999999999999876  479999999999975 44      899


Q ss_pred             HHHHHHHHHHhCC--------CHHHHHHHHHHH
Q 015393          193 AGVALCARAAFLG--------HIDALRELGHCL  217 (408)
Q Consensus       193 kA~~~~~kAA~~G--------~~~A~~~Lg~~y  217 (408)
                      +|+.+|+++.+..        +..+...|+.+.
T Consensus        90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           90 SALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            9999999998754        455566665554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.89  E-value=0.00054  Score=62.17  Aligned_cols=111  Identities=13%  Similarity=0.023  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHc------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          119 SESAHRFLKLCADA------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       119 ~~~A~~~l~~aAe~------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .++|+.+|+++.+.      .++.+.+.+|.+|. ..+++++|+.+|++|.+..  ++.+++.||.+|.. .|      +
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~------~   92 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG------N   92 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------C
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cc------C
Confidence            57888888888875      46788899999888 6789999999999988764  78899999999865 34      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +.+|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+.+|+++.+..
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  141 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDD  141 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            88999999999874  578899999999976    678899999999998753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.89  E-value=4.6e-06  Score=86.01  Aligned_cols=48  Identities=31%  Similarity=0.861  Sum_probs=39.9

Q ss_pred             CCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhhhh
Q 015393          327 LRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAERW  380 (408)
Q Consensus       327 ~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~~~  380 (408)
                      ...|.  .|.+.   ...+.+|++|+.+.|||++||+.||+ .||..|..+..+
T Consensus        49 ~~~C~--~C~~~---~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~   96 (490)
T 3n71_A           49 NFVCH--TCFKR---QEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKY   96 (490)
T ss_dssp             TTBCT--TTCCB---CSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CCcCC--CCCCC---CCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHhc
Confidence            46888  55543   23568999999999999999999999 699999988765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.89  E-value=0.00014  Score=59.75  Aligned_cols=110  Identities=16%  Similarity=0.054  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHHHHHc----CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393          118 WSESAHRFLKLCADA----GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG  181 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~----G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G  181 (408)
                      ..++|+.+++++.+.    ++.    .+.+.+|.+|. ..+++++|+.+|++|.+.    ++    ..+.+++|.+|.. 
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-  101 (164)
T 3ro3_A           24 NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-  101 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-
Confidence            356777777776654    443    48889999998 689999999999998764    22    5688999999965 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .|      ++++|+.+|+++.+.    ++    ..+.+.||.+|..    ..+.++|+.+|++|.+
T Consensus       102 ~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          102 LQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             Hh------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence            34      899999999999753    33    4578899999965    6799999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.89  E-value=8e-05  Score=72.31  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=90.4

Q ss_pred             HHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---------------HHHHHHHHHHHHcCC
Q 015393          122 AHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---------------AQALYSLAVIQFNGS  182 (408)
Q Consensus       122 A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---------------~~A~~~Lg~~y~~G~  182 (408)
                      |+.+|+++.  ...++.+++++|.+|+ ..+++++|+.+|++|.+..  +               +.++++||.+|.. .
T Consensus       132 A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~  209 (336)
T 1p5q_A          132 AKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-L  209 (336)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             ccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence            444444333  3457789999999998 6899999999999998764  4               6899999999975 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          183 GGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |      ++.+|+.+|++|.+.  .++.+++++|.+|..    ..++++|+.+|++|.+..
T Consensus       210 g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          210 Q------AFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLY  260 (336)
T ss_dssp             T------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             C------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Confidence            4      899999999999886  689999999999976    679999999999998753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.88  E-value=0.00036  Score=54.79  Aligned_cols=94  Identities=22%  Similarity=0.301  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++...  .++.+.+.||.+|.. .|      +++
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~   94 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYD   94 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHH
Confidence            3467899999988765  57899999999998 678999999999999876  578899999999975 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      +|..+|+++.+.  .++.+...||.++.
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           95 EAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999875  68899999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.87  E-value=0.00028  Score=65.10  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=92.4

Q ss_pred             cCCHHHHHHHHHHHHHc----------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----------CcHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----------SHAQALYSLA  175 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg  175 (408)
                      ....++|+.+|+++.+.          ....++++||.+|. ..+++++|+.+|+++.+.          ....++++||
T Consensus        82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  160 (311)
T 3nf1_A           82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA  160 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            34568889999888765          24568899999998 689999999999999875          2466889999


Q ss_pred             HHHHcCCCCCCCccCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          176 VIQFNGSGGSKNDKDLRAGVALCARAAFL------G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~------G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+|.. .|      ++.+|+++|+++.+.      +    .+.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       161 ~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          161 LLCQN-QG------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHT-TT------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-cC------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            99964 34      899999999999875      2    24578899999976    68999999999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.87  E-value=0.00048  Score=53.63  Aligned_cols=94  Identities=5%  Similarity=-0.191  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+..  ++.+.+++|.+|.. .|      ++.
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~   89 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LN------RFE   89 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-Hh------hHH
Confidence            3468899999988765  58999999999998 6899999999999998764  78999999999975 34      889


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      +|..+|+++.+.  +++.+...++.+..
T Consensus        90 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           90 EAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999987  57888888887763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.86  E-value=0.00014  Score=68.40  Aligned_cols=111  Identities=12%  Similarity=0.001  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----Cc----HHHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS-----SH----AQALYSLAVIQF  179 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G~----~~A~~~Lg~~y~  179 (408)
                      ...++|+.+|+++.+.    .+    ..+.+++|.+|. ..+++++|+.+|++|.+.     ++    +.+.+++|.+|.
T Consensus       129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            3578999999998753    22    568999999998 689999999999999832     22    269999999997


Q ss_pred             cCCCCCCCccCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHcCCCccccHHHH-HHHHHHHHH
Q 015393          180 NGSGGSKNDKDLRAGVALCARAAFLG--------HIDALRELGHCLQDGYGVRQNIAEG-RRFLVQANA  239 (408)
Q Consensus       180 ~G~Gv~~~~~d~~kA~~~~~kAA~~G--------~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~kAA~  239 (408)
                      . .|      ++++|+.+|++|.+..        ...+++++|.+|..    ..+.++| ..+|++|..
T Consensus       208 ~-~~------~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          208 L-DS------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             H-TT------CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred             H-Hh------hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence            5 34      8999999999997631        26789999999976    5678899 888998875

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.85  E-value=0.00054  Score=65.17  Aligned_cols=117  Identities=17%  Similarity=0.031  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC--------
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGS--------  185 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~--------  185 (408)
                      ..++|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+.+|+++.+..  ++.+++.||.+|.. .|-.        
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~  156 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQRQACEILR  156 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            356666666666654  46666777776666 4566677777777666553  56666677766643 2200        


Q ss_pred             -----------------------------------CCccCHHHHHHHHHHHHhC--C--CHHHHHHHHHHHHcCCCcccc
Q 015393          186 -----------------------------------KNDKDLRAGVALCARAAFL--G--HIDALRELGHCLQDGYGVRQN  226 (408)
Q Consensus       186 -----------------------------------~~~~d~~kA~~~~~kAA~~--G--~~~A~~~Lg~~y~~G~Gv~~d  226 (408)
                                                         -...++.+|+.+|+++.+.  .  ++.+.+.||.+|..    ..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----~g~  232 (368)
T 1fch_A          157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----SGE  232 (368)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH----TTC
T ss_pred             HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH----cCC
Confidence                                               0001344555555555443  2  57888899999976    678


Q ss_pred             HHHHHHHHHHHHHc
Q 015393          227 IAEGRRFLVQANAR  240 (408)
Q Consensus       227 ~~~A~~w~~kAA~~  240 (408)
                      +++|+.+|+++.+.
T Consensus       233 ~~~A~~~~~~al~~  246 (368)
T 1fch_A          233 YDKAVDCFTAALSV  246 (368)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.85  E-value=0.00034  Score=67.69  Aligned_cols=93  Identities=20%  Similarity=0.198  Sum_probs=42.7

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+.++||.+|. ..+++++|+.+|+++...  .++.++++||.+|.. .|      ++++|+.+|+++.+.  .++.++
T Consensus       203 ~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~~  274 (388)
T 1w3b_A          203 LDAYINLGNVLK-EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QG------LIDLAIDTYRRAIELQPHFPDAY  274 (388)
T ss_dssp             HHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCCHHHH
Confidence            334444444433 233444444444444332  234444444444432 12      455555555555543  345555


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +.||.+|..    ..++++|+.+|+++.+
T Consensus       275 ~~l~~~~~~----~g~~~~A~~~~~~al~  299 (388)
T 1w3b_A          275 CNLANALKE----KGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHH----HSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            555555543    3455555555555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.83  E-value=0.00047  Score=54.60  Aligned_cols=95  Identities=14%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++...  .++.+++.+|.+|.. .|      ++.
T Consensus        26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~   97 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LN------KHV   97 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hC------CHH
Confidence            3467899999988764  58899999999998 689999999999999876  478999999999975 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +|+.+|+++.+.  .++.+.+.+|.++..
T Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           98 EAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            999999999875  578999999998853

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.82  E-value=0.00056  Score=64.85  Aligned_cols=120  Identities=15%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHH---HcCCCCCCCccCH
Q 015393          115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQ---FNGSGGSKNDKDL  191 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y---~~G~Gv~~~~~d~  191 (408)
                      .....++|+.+|++   .+++++.+.+|.+|. ..+++++|+.+|+++.+.......++|+..+   ..+.|      ++
T Consensus       113 ~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~------~~  182 (291)
T 3mkr_A          113 YDQNPDAALRTLHQ---GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE------KL  182 (291)
T ss_dssp             HTTCHHHHHHHHTT---CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT------HH
T ss_pred             HCCCHHHHHHHHhC---CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch------HH
Confidence            34556888888887   688999999999988 6788999999999988775333334443221   12334      78


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHhh
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLSS  248 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~~  248 (408)
                      ++|+..|+++.+.  .++.+.+.+|.+|..    ..++++|...|++|.+.  .++.++.+
T Consensus       183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          183 QDAYYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            8999999999875  678889999999876    67899999999998875  45555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.81  E-value=0.00013  Score=71.13  Aligned_cols=112  Identities=9%  Similarity=0.020  Sum_probs=91.3

Q ss_pred             cCCHHHHHHHHHHHHHc--------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA--------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQ  178 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y  178 (408)
                      ....++|+.+|++|.+.        +.+.+.++||.+|. ..+++.+|+.+|++|.+.         +.+.+.++||.+|
T Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            34568899999988754        34678999999998 688999999999999753         2366888999999


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .. .|      ++++|.++|++|.+.    |+    ..+.++||.+|..    ..+.++|+.+|++|.+
T Consensus       193 ~~-~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          193 DD-FK------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             HH-hC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            75 34      889999999999873    43    4578899999976    6799999999999987

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.80  E-value=0.00015  Score=70.64  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=92.9

Q ss_pred             cCCHHHHHHHHHHHHHc---------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA---------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQ  178 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~---------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y  178 (408)
                      ....+.|+.++++|.+.         +.+.+.++||.+|. ..+++++|+++|++|.+.    |    ...+.++||.+|
T Consensus       154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  232 (378)
T 3q15_A          154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY  232 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34467888888888753         23568889999998 689999999999999874    3    356899999999


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHh-----C--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAF-----L--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~-----~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .. .|      ++++|+.+|++|.+     .  ..+.+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus       233 ~~-~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          233 DR-SG------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HH-HT------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HH-CC------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            65 34      89999999999987     3  237899999999976    67999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.80  E-value=0.00027  Score=56.05  Aligned_cols=94  Identities=21%  Similarity=0.278  Sum_probs=80.3

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALR  211 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~  211 (408)
                      ++++.+|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|+.+|+++...  .++.+.+
T Consensus         2 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~~   73 (136)
T 2fo7_A            2 EAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPRSAEAWY   73 (136)
T ss_dssp             HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHH-HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hc------CHHHHHHHHHHHHHHCCCchHHHH
Confidence            57888999988 578999999999999875  478899999999865 23      889999999999875  5788999


Q ss_pred             HHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          212 ELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       212 ~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+|.+|..    ..+.++|+.+|+++....
T Consensus        74 ~l~~~~~~----~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           74 NLGNAYYK----QGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHT----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            99999965    679999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.79  E-value=0.00015  Score=71.58  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHh----------------c--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAI----------------S--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~----------------~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      +.+++.+|..|+ ..+++++|+.+|++|.+                .  .++.++++||.+|.. .|      ++++|+.
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g------~~~~A~~  294 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MS------DWQGAVD  294 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-cc------CHHHHHH
Confidence            456888999988 68999999999999987                2  467899999999974 34      8999999


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          197 LCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|++|.+.  .++.+++.+|.+|..    ..++++|+.+|++|.+..
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            99999986  689999999999976    679999999999998763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.79  E-value=0.00027  Score=66.67  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=90.7

Q ss_pred             cCCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCL-QNRGSGASLMAKAAIS----SH----AQALYSLAVIQ  178 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y  178 (408)
                      ....++|+.+|++|.+.    |+    ..++.+||.+|. .. +++++|+.+|++|.+.    ++    ..++.+||.+|
T Consensus        90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A           90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            34568899999988764    55    458899999998 54 9999999999999875    22    46788999999


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHhCC--CH-------HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAFLG--HI-------DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~G--~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .. .|      ++.+|+.+|+++.+..  +.       .+++.+|.+|..    ..|+.+|+.+|++|.+.
T Consensus       169 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          169 AL-DG------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC
T ss_pred             HH-hC------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            65 44      8999999999999842  22       267889999975    67999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.78  E-value=0.00016  Score=56.90  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh----C
Q 015393          131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF----L  204 (408)
Q Consensus       131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~----~  204 (408)
                      +..++.+.+.||.+|+ ..+++++|+.+|++|.+.  .++.++++||.+|.. .|      ++++|+.+|++|.+    .
T Consensus         3 ~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LD------RTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhhhcC
Confidence            4578999999999998 689999999999999887  478999999999975 44      88999999999985    4


Q ss_pred             CCHHHHHHHHHHHHc
Q 015393          205 GHIDALRELGHCLQD  219 (408)
Q Consensus       205 G~~~A~~~Lg~~y~~  219 (408)
                      ++..+...|..++..
T Consensus        75 ~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           75 GTQKDLSELQDAKLK   89 (100)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHH
Confidence            778888888777753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.78  E-value=8.8e-05  Score=64.30  Aligned_cols=114  Identities=7%  Similarity=-0.045  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHH--HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          117 NWSESAHRFLKLCA--DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       117 ~~~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ...++|+.+|+++.  +.+++.+.+.||.+|. ..+++++|+.+|+++.... ++.....++.+...+.+      +...
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~------~~~~   92 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA------AESP   92 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH------TSCH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc------ccch
Confidence            34578888888654  5689999999999998 6889999999999987664 45555555555432222      1124


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |+..|+++.+.  +++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhC
Confidence            78889998875  689999999999976    678999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.77  E-value=0.00013  Score=63.79  Aligned_cols=95  Identities=11%  Similarity=-0.062  Sum_probs=78.8

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---------H-----HHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH---------A-----QALYSLAVIQFNGSGGSKNDKDLRAGVALCA  199 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---------~-----~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~  199 (408)
                      .....+++|..++ ..+++++|+.+|.+|.+...         .     .+++++|.++.. .|      ++++|+..|.
T Consensus        10 ~a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lg------r~~eAl~~~~   81 (159)
T 2hr2_A           10 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LR------SFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CC------CHHHHHHHHH
Confidence            4556778888887 67999999999999987642         2     299999999865 45      8889999999


Q ss_pred             HHHhC---------CCHHHH----HHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          200 RAAFL---------GHIDAL----RELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       200 kAA~~---------G~~~A~----~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.+.         .++.++    |++|..|..    -.++++|+..|++|.+.
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            99876         677888    999999965    68999999999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.77  E-value=0.00013  Score=67.09  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=86.4

Q ss_pred             HcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC-
Q 015393          131 DAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL-  204 (408)
Q Consensus       131 e~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~-  204 (408)
                      +..++++.|.+|..++ ..+++++|+.+|+++.+.  ++   +.+++.||.+|.. .|      ++.+|+.+|+++.+. 
T Consensus        11 ~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NK------EYLLAASEYERFIQIY   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hC------cHHHHHHHHHHHHHHC
Confidence            4578899999999998 689999999999999887  46   8999999999975 34      899999999999986 


Q ss_pred             ----CCHHHHHHHHHHHHcCC----CccccHHHHHHHHHHHHHc
Q 015393          205 ----GHIDALRELGHCLQDGY----GVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       205 ----G~~~A~~~Lg~~y~~G~----Gv~~d~~~A~~w~~kAA~~  240 (408)
                          ..+.+++.+|.+|..-.    --..+..+|+.+|+++.+.
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence                33789999999996410    1157899999999999975

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.77  E-value=0.00027  Score=59.97  Aligned_cols=81  Identities=15%  Similarity=0.078  Sum_probs=70.5

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.+.++||.+|. ..+++++|+.+|++|...  .++.++++||.+|.. .|      ++
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~  105 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XG------EL  105 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cC------CH
Confidence            34568899999988654  69999999999998 689999999999999876  589999999999975 45      89


Q ss_pred             HHHHHHHHHHHhC
Q 015393          192 RAGVALCARAAFL  204 (408)
Q Consensus       192 ~kA~~~~~kAA~~  204 (408)
                      ++|+.+|+++.+.
T Consensus       106 ~~A~~~~~~al~~  118 (148)
T 2vgx_A          106 AEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.76  E-value=0.00021  Score=67.98  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393          118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG  181 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G  181 (408)
                      ..++|+.+|++|.+.    |+    ..++.+||.+|. . +++++|+.+|++|.+.    |+    ..++++||.+|.. 
T Consensus        91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-  167 (307)
T 2ifu_A           91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-  167 (307)
T ss_dssp             CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-
Confidence            457788888887654    44    457889999998 4 9999999999999865    22    5788999999965 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      .|      ++.+|+.+|++|.+.    +.    ..+.+.+|.+|..    ..|..+|+.+|+++.
T Consensus       168 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          168 QQ------KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY  222 (307)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT
T ss_pred             cC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Confidence            45      899999999999873    43    3477788888864    468999999999987

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.75  E-value=0.00033  Score=58.44  Aligned_cols=80  Identities=15%  Similarity=0.083  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+++.||.+|. ..+++++|+.+|++|...  .++.++++||.+|.. .|      +++
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~  103 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LG------DLD  103 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHH
Confidence            4468899999988765  58999999999998 689999999999999876  589999999999975 45      899


Q ss_pred             HHHHHHHHHHhC
Q 015393          193 AGVALCARAAFL  204 (408)
Q Consensus       193 kA~~~~~kAA~~  204 (408)
                      +|+.+|+++.+.
T Consensus       104 ~A~~~~~~al~~  115 (142)
T 2xcb_A          104 GAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.74  E-value=5.5e-05  Score=61.09  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcC-----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          120 ESAHRFLKLCADAG-----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       120 ~~A~~~l~~aAe~G-----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ++|+.+|+++.+.+     ++.+.++||.+|. ..+++++|+.+|++|.+.  .++.+.++||.+|.. .|      +++
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~   78 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LG------RYE   78 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cC------CHH
Confidence            34555555555442     3345556665555 455566666666665554  355566666655543 22      555


Q ss_pred             HHHHHHHHHHh
Q 015393          193 AGVALCARAAF  203 (408)
Q Consensus       193 kA~~~~~kAA~  203 (408)
                      +|+.+|+++..
T Consensus        79 ~A~~~~~~al~   89 (117)
T 3k9i_A           79 QGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56666665554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.73  E-value=0.00054  Score=56.03  Aligned_cols=94  Identities=14%  Similarity=-0.012  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHcCC-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          118 WSESAHRFLKLCADAGN-----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ..++|+.+|+++.+...     ..+++++|.+|. ..+++++|+.+|+++...  .++.+++++|.+|.. .|      +
T Consensus        43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~  114 (148)
T 2dba_A           43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LG------R  114 (148)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HT------C
T ss_pred             CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cC------C
Confidence            45789999998887653     789999999998 689999999999999876  489999999999975 34      8


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +++|+.+|+++.+.  .+..+...++.+...
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999875  578888888887754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.71  E-value=0.00057  Score=54.24  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHcCCCCC
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H-------AQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~-------~~A~~~Lg~~y~~G~Gv~  185 (408)
                      ...++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+.+|+++....  +       +.+.+++|.+|.. .|  
T Consensus        18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~--   93 (131)
T 1elr_A           18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EE--   93 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TT--
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hc--
Confidence            3468899999988875  58899999999998 6899999999999998774  3       8899999999975 34  


Q ss_pred             CCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 015393          186 KNDKDLRAGVALCARAAFL-GHIDALRELGHCLQ  218 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~-G~~~A~~~Lg~~y~  218 (408)
                          ++.+|+.+|+++.+. .++.....|+.++.
T Consensus        94 ----~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  123 (131)
T 1elr_A           94 ----KYKDAIHFYNKSLAEHRTPDVLKKCQQAEK  123 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                899999999999886 46778888887764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.71  E-value=4.9e-05  Score=75.59  Aligned_cols=114  Identities=10%  Similarity=0.001  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--H---HHHHHHHHHHHcCCCCCCCccCH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--A---QALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--~---~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      .+.|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+.+|++|.+...  .   ...+.+|.++..-.|      +.
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~------~~  388 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHA-LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK------CE  388 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHH-HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS------CH
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHH-HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC------CH
Confidence            45788888888765  47788999999998 68999999999999987642  2   235677777655445      88


Q ss_pred             HHHHHHHHHHHhC--------------------------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393          192 RAGVALCARAAFL--------------------------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA  243 (408)
Q Consensus       192 ~kA~~~~~kAA~~--------------------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~  243 (408)
                      .+|+.+|++|...                          .++.+++.||.+|..    ..++++|+.+|++|.+.|..
T Consensus       389 ~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~----~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL----NEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH----HHHCC---------------
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Confidence            8999999998753                          457789999999975    67889999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.71  E-value=0.00051  Score=56.55  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHcCCCCC
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---------HAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---------~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      ...++|+.+|++|.+.  .++.+++++|.+|+ ..+++++|+++|++|.+..         ...++++||.+|.. .|  
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~--   97 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QN--   97 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT--
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cC--
Confidence            3568999999999874  68999999999999 6899999999999998753         14588999999864 34  


Q ss_pred             CCccCHHHHHHHHHHHHhC-CCHHHHHHH
Q 015393          186 KNDKDLRAGVALCARAAFL-GHIDALREL  213 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~-G~~~A~~~L  213 (408)
                          ++.+|+++|++|... -+++....|
T Consensus        98 ----~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           98 ----DLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHhhCcCHHHHHHH
Confidence                899999999999764 455544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.71  E-value=0.00089  Score=67.19  Aligned_cols=111  Identities=16%  Similarity=0.178  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++...  .++.+++.||.+|.. .|      ++++
T Consensus       291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g------~~~~  362 (537)
T 3fp2_A          291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QG------KFTE  362 (537)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence            357888888887764  57889999999888 678899999999998876  467889999999864 34      7889


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|++|.+.
T Consensus       363 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          363 SEAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHc
Confidence            99999998875  678889999999865    57899999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00032  Score=54.72  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=65.3

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC---
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH---  206 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~---  206 (408)
                      ++++.+.+|..|+ ..+++++|+.+|++|.+.  .++.+++++|.+|.. .|      ++++|+.+|+++.+.  .+   
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LG------EYTQAIQMCQQGLRYTSTAEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTSCSSTTSH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCccHH
Confidence            4678899999998 789999999999999876  489999999999975 34      899999999999986  35   


Q ss_pred             ---HHHHHHHHHHHH
Q 015393          207 ---IDALRELGHCLQ  218 (408)
Q Consensus       207 ---~~A~~~Lg~~y~  218 (408)
                         ..+.+.+|.++.
T Consensus        75 ~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           75 AIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence               667788887774

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.70  E-value=0.00049  Score=62.07  Aligned_cols=120  Identities=7%  Similarity=-0.059  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHHHHc--CC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH---HHHHHHHHHHHcC-----
Q 015393          117 NWSESAHRFLKLCADA--GN---VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA---QALYSLAVIQFNG-----  181 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~---~A~~~Lg~~y~~G-----  181 (408)
                      ...++|+..|+++.+.  .+   +.+.+.||.+|+ ..+++++|+..|+++.+..  ++   .|+|.+|.+|...     
T Consensus        18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            3468899999988874  23   479999999998 6899999999999998763  33   5899999998641     


Q ss_pred             -----CC-CCCCccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHHcCCCccccHHHHHHHHHH
Q 015393          182 -----SG-GSKNDKDLRAGVALCARAAFL--GHIDAL-----------------RELGHCLQDGYGVRQNIAEGRRFLVQ  236 (408)
Q Consensus       182 -----~G-v~~~~~d~~kA~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~k  236 (408)
                           .+ ......+.++|+..|+++.+.  .++.+.                 +.+|.+|..    .++..+|+..|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~  172 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVNRVEG  172 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHH
Confidence                 01 011123789999999999885  333222                 567877766    7899999999999


Q ss_pred             HHHcC
Q 015393          237 ANARE  241 (408)
Q Consensus       237 AA~~G  241 (408)
                      +.+.-
T Consensus       173 ~l~~~  177 (225)
T 2yhc_A          173 MLRDY  177 (225)
T ss_dssp             HHHHS
T ss_pred             HHHHC
Confidence            99863

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.70  E-value=0.00025  Score=68.85  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             cCCHHHHHHHHHHHHHcC--CH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcC
Q 015393          116 NNWSESAHRFLKLCADAG--NV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNG  181 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G--~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G  181 (408)
                      ....++|+.+|+++.+..  ++    .+++.||.+|+ ..+++++|+.+|++|.+.        ..+.+++.||.+|.. 
T Consensus        61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-  138 (411)
T 4a1s_A           61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV-  138 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-
Confidence            345688999999888764  44    58899999998 689999999999999764        356789999999975 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCcccc-----------------HHHHHHHHHH
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL--------GHIDALRELGHCLQDGYGVRQN-----------------IAEGRRFLVQ  236 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~d-----------------~~~A~~w~~k  236 (408)
                      .|      ++.+|+.+|+++.+.        ....+.+.||.+|..    ..+                 +++|+.+|++
T Consensus       139 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          139 MG------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CC------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            34      889999999999764        235588999999965    556                 8999999999


Q ss_pred             HHH
Q 015393          237 ANA  239 (408)
Q Consensus       237 AA~  239 (408)
                      |.+
T Consensus       209 al~  211 (411)
T 4a1s_A          209 NLK  211 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.69  E-value=0.00016  Score=69.24  Aligned_cols=114  Identities=11%  Similarity=-0.058  Sum_probs=93.6

Q ss_pred             hcCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHcCCCCCCCc
Q 015393          115 ANNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA----QALYSLAVIQFNGSGGSKND  188 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~~~  188 (408)
                      .....++|...|......  +++ ++|.+|.+|+ ..++++.++.+|+++....++    .+.|+||.++.. .|     
T Consensus       114 ~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG-----  185 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LA-----  185 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TT-----
T ss_pred             HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CC-----
Confidence            344568888888866443  455 9999999988 789999999999988766533    589999999964 56     


Q ss_pred             cCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          189 KDLRAGVALCARAAFLG-----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                       ++++|+.||+++....     .+++++++|.++..    ..+.++|+.+|+++.+..
T Consensus       186 -~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          186 -LFTEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             -CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             -CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence             8999999999998665     45799999999976    679999999999998864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.69  E-value=8.8e-05  Score=79.15  Aligned_cols=117  Identities=12%  Similarity=0.040  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHH--------H--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC
Q 015393          117 NWSESAHRFLKLCA--------D--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG  184 (408)
Q Consensus       117 ~~~~~A~~~l~~aA--------e--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv  184 (408)
                      ...++|+..|+++.        +  ..++++.+.+|.+|+ ..+++++|+.+|++|.+.  .++.+++++|.+|.. .| 
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g-  481 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TG-  481 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HT-
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cC-
Confidence            34688999999887        3  568899999999998 689999999999999875  699999999999975 34 


Q ss_pred             CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHH
Q 015393          185 SKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVL  246 (408)
Q Consensus       185 ~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~  246 (408)
                           ++++|+..|++|.+.  +++.++++||.+|..    ..++++ +.+|++|.+.  .++.+.
T Consensus       482 -----~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~  537 (681)
T 2pzi_A          482 -----DYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAA  537 (681)
T ss_dssp             -----CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred             -----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHH
Confidence                 899999999999876  789999999999976    556667 8888888864  344443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.69  E-value=0.0016  Score=66.38  Aligned_cols=111  Identities=11%  Similarity=0.028  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C---c--HHHHHHHHHHHHcCCCCCC
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S---H--AQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G---~--~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ..++|..+|+++.+.  .++.+++.||.+|. ..+++++|+++|+++.+.    +   .  +.+++.||.+|.. .|   
T Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g---  530 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LK---  530 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TT---
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hc---
Confidence            456777777766553  46777777777776 567777777777777664    1   1  5677777777754 34   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          187 NDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                         ++++|+++|+++.+.  .++.+++.||.+|..    ..+.++|+.+|+++.+.
T Consensus       531 ---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          531 ---MYDAAIDALNQGLLLSTNDANVHTAIALVYLH----KKIPGLAITHLHESLAI  579 (597)
T ss_dssp             ---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence               677777777777664  367777777777755    56777777777777764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.0003  Score=70.01  Aligned_cols=112  Identities=11%  Similarity=0.008  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c------HHHHHHHHHHHHcC--CCCCC
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H------AQALYSLAVIQFNG--SGGSK  186 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~------~~A~~~Lg~~y~~G--~Gv~~  186 (408)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++....  +      ..+++.+|.+|..-  .|   
T Consensus       354 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---  429 (514)
T 2gw1_A          354 FDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE---  429 (514)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT---
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC---
Confidence            45555555555443  34555566666555 4556666666666655432  2      22666666666541  33   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          187 NDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                         ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+..
T Consensus       430 ---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          430 ---NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ----QEDIDEAITLFEESADLA  479 (514)
T ss_dssp             ---HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhc
Confidence               566666666666553  456666666666654    456666666666666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.68  E-value=0.00024  Score=72.07  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=69.7

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---------------HHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---------------AQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---------------~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      .++.+++++|..|+ ..+++.+|+.+|++|.+.  .+               ..++++||.+|.. .|      ++.+|+
T Consensus       266 ~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g------~~~~A~  337 (457)
T 1kt0_A          266 EQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LR------EYTKAV  337 (457)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hc------CHHHHH
Confidence            35567777777777 567788888888877764  23               5777788887764 33      677888


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          196 ALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       196 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+|.+|.+.  .++.+++++|.+|..    ..++++|+.+|++|.+..
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            888887764  577788888888765    567778888888877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.67  E-value=0.0014  Score=62.06  Aligned_cols=114  Identities=9%  Similarity=0.006  Sum_probs=88.6

Q ss_pred             cCCHHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+..|++....    .++.+.+.+|.+|. ..+++++|+.+|++   .+++++.+.+|.+|.. .|      ++
T Consensus        78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~-~g------~~  146 (291)
T 3mkr_A           78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ---GDSLECMAMTVQILLK-LD------RL  146 (291)
T ss_dssp             STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH-TT------CH
T ss_pred             CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH-CC------CH
Confidence            34578999999987654    58999999999998 78999999999999   6899999999999975 44      78


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|..+|+++.+.........|+..+..-.--..++++|+..|+++.+.
T Consensus       147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~  195 (291)
T 3mkr_A          147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK  195 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence            9999999999876433333444432211000136899999999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.67  E-value=0.00055  Score=60.16  Aligned_cols=95  Identities=19%  Similarity=0.110  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHc--CCH----------------HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA--GNV----------------EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV  176 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~----------------~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~  176 (408)
                      ...++|+.+|+++.+.  .++                .+++++|.+|+ ..+++++|+.+|++|...  .++.+++++|.
T Consensus        52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3467899999988874  344                89999999998 689999999999999876  48999999999


Q ss_pred             HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +|.. .|      ++++|+.+|+++.+.  .+..+...|+.++..
T Consensus       131 ~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A          131 ANMY-FG------FLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHH-HT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHH-cc------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            9964 34      899999999999875  689999999999854

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.67  E-value=0.002  Score=60.34  Aligned_cols=112  Identities=10%  Similarity=-0.049  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHHHcCC--------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHc
Q 015393          117 NWSESAHRFLKLCADAGN--------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQFN  180 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G~--------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y~~  180 (408)
                      ...++|+.+++++.+...        ....+.+|.+|. ..+++++|+.+|++|.+.    .    ...+.++||.+|..
T Consensus        89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            346788888887776432        234667777776 577999999999999853    1    25689999999976


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHh---C--CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          181 GSGGSKNDKDLRAGVALCARAAF---L--GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~---~--G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .|      ++++|+.+|++|.+   .  ++    +.+.+++|.+|..    ..++++|+.+|++|.+.
T Consensus       168 -~~------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          168 -NG------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             -cC------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence             44      89999999999983   1  22    2689999999976    78999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0013  Score=65.45  Aligned_cols=115  Identities=6%  Similarity=-0.119  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---------------------------
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH---------------------------  167 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---------------------------  167 (408)
                      ...++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+..|+++...+.                           
T Consensus        53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  131 (514)
T 2gw1_A           53 GDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG  131 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred             hhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468899999988765  58899999999998 67899999999999876653                           


Q ss_pred             ------------------------------------------------------HHHHHHHHHHHHc--CCCCCCCccCH
Q 015393          168 ------------------------------------------------------AQALYSLAVIQFN--GSGGSKNDKDL  191 (408)
Q Consensus       168 ------------------------------------------------------~~A~~~Lg~~y~~--G~Gv~~~~~d~  191 (408)
                                                                            +.+.+.+|.++..  ..|      ++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  205 (514)
T 2gw1_A          132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE------SY  205 (514)
T ss_dssp             -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT------HH
T ss_pred             HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc------cH
Confidence                                                                  6777788887764  234      88


Q ss_pred             HHHHHHHHHHHh----------------CCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          192 RAGVALCARAAF----------------LGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       192 ~kA~~~~~kAA~----------------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      ++|+.+|+++.+                ..++.+.+.+|.+|..    ..+.++|+.+|+++.+...
T Consensus       206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~  268 (514)
T 2gw1_A          206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFP  268 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCc
Confidence            999999999988                3457789999999976    6789999999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.65  E-value=0.0012  Score=64.83  Aligned_cols=112  Identities=12%  Similarity=0.035  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.+  ++.+++.||.+|.. .|      ++++
T Consensus        41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~  112 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QG------KLDE  112 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC------CHHH
Confidence            467899999988764  68999999999998 6889999999999998864  78999999999975 34      8899


Q ss_pred             HHHHHHHHHhCC--CH---HHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          194 GVALCARAAFLG--HI---DALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       194 A~~~~~kAA~~G--~~---~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |+.+|+++.+..  +.   .+...|            |.+|..    ..+.++|+.+|+++.+..
T Consensus       113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A          113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            999999998864  33   454444            555654    678899999999988753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.64  E-value=0.00051  Score=54.73  Aligned_cols=89  Identities=16%  Similarity=0.053  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          121 SAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      +++.+|+++.+  ..++.+.++||.+|+ ..+++++|+.+|++|...  .++.++++||.+|.. .|      ++.+|+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QG------DRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cC------CHHHHHH
Confidence            45677777765  468999999999998 689999999999999876  478999999999975 34      8899999


Q ss_pred             HHHHHHhC----CCHHHHHHHHHHH
Q 015393          197 LCARAAFL----GHIDALRELGHCL  217 (408)
Q Consensus       197 ~~~kAA~~----G~~~A~~~Lg~~y  217 (408)
                      +|+++.+.    ++..+...+...+
T Consensus        75 ~~~~al~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           75 AWESGLAAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHH
Confidence            99999763    5666655555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.64  E-value=0.0006  Score=57.88  Aligned_cols=93  Identities=9%  Similarity=-0.037  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHHc--------------------CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA--------------------GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSL  174 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--------------------G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~L  174 (408)
                      ...++|+.+|.++.+.                    .++.+++++|.+|+ ..+++++|+.++++|.+.  .++.+++.+
T Consensus        25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3457788888877765                    45689999999998 688999999999999876  589999999


Q ss_pred             HHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCH-HHHHHHHHHH
Q 015393          175 AVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHI-DALRELGHCL  217 (408)
Q Consensus       175 g~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~-~A~~~Lg~~y  217 (408)
                      |.+|.. .|      ++.+|+.+|++|.+.  +++ .....|+.+.
T Consensus       104 g~~~~~-~g------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          104 AKARIA-AW------KLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHH-TT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHH-Hh------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999965 45      899999999999886  345 3455566555

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.63  E-value=0.00063  Score=66.00  Aligned_cols=118  Identities=15%  Similarity=0.069  Sum_probs=92.5

Q ss_pred             cCCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc--------HHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAISSH--------AQALYSLAVIQF  179 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~--------~~A~~~Lg~~y~  179 (408)
                      ....++|+.+|+++.+.    ++    ..+.++||.+|. ..+++++|+.+|++|.+...        ..+++.||.+|.
T Consensus       236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  314 (411)
T 4a1s_A          236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT  314 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34467888888877654    33    238889999988 68899999999999876532        678899999996


Q ss_pred             cCCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHH
Q 015393          180 NGSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAV  245 (408)
Q Consensus       180 ~G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A  245 (408)
                      . .|      ++++|+.+|+++.+.    ++    ..+++.||.+|..    ..|.++|+.+|++|.+.-....
T Consensus       315 ~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          315 L-LH------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----IGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             H-TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCHHH
T ss_pred             H-cC------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcc
Confidence            4 34      889999999999764    33    5588899999976    6799999999999998655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.62  E-value=0.00027  Score=61.35  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=79.4

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      ..+.+.+.||.+|. ..+++++|+.+|++|.+.        ..+.++++||.+|.. .|      ++++|..+|++|.+.
T Consensus        24 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           24 TASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG------NWDAARRCFLEEREL   95 (203)
T ss_dssp             THHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHH
Confidence            45789999999998 689999999999999872        356789999999975 44      899999999999874


Q ss_pred             ----C-C----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          205 ----G-H----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       205 ----G-~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                          | +    ..+.++||.+|..    ..++++|+.+|++|.+
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence                4 3    4578899999976    6799999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.61  E-value=0.00033  Score=57.26  Aligned_cols=80  Identities=16%  Similarity=0.070  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+..|+++.+.  .++.+.+.||.+|. ..+++++|+..|++|.+.  .++.++++||.+|.. .|      +++
T Consensus        31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g------~~~  102 (121)
T 1hxi_A           31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EH------NAN  102 (121)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH------HHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence            3568899999988764  69999999999998 689999999999999887  489999999999964 34      889


Q ss_pred             HHHHHHHHHHhC
Q 015393          193 AGVALCARAAFL  204 (408)
Q Consensus       193 kA~~~~~kAA~~  204 (408)
                      +|+.+|+++.+.
T Consensus       103 ~A~~~~~~al~~  114 (121)
T 1hxi_A          103 AALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.61  E-value=0.00089  Score=62.80  Aligned_cols=111  Identities=12%  Similarity=-0.035  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHcC--CHH------HHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHc
Q 015393          117 NWSESAHRFLKLCADAG--NVE------ACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFN  180 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~~~------A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~  180 (408)
                      ...++|..+++++.+.-  ++.      ..+.+|.+|. ..+++++|+.+|++|.+.    ++    ..+..+||.+|..
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            44688999998876632  233      2334777776 678999999999999873    22    4579999999975


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          181 GSGGSKNDKDLRAGVALCARAAF----L-G----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~----~-G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       .|      ++++|+.+|++|.+    . +    .+.+.++||.+|..    ..++++|+.+|.+|.+
T Consensus       168 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          168 -NG------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE  224 (293)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             -cC------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence             44      89999999999984    1 2    34588999999976    7899999999999986

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.60  E-value=0.00099  Score=62.44  Aligned_cols=113  Identities=12%  Similarity=0.050  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+++.+|.+|.. .|      +++
T Consensus        17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~   88 (359)
T 3ieg_A           17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QG------KLD   88 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cC------ChH
Confidence            3468899999988765  58999999999998 689999999999999875  578999999999965 34      899


Q ss_pred             HHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFLG-----HIDALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~G-----~~~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+.+|+++.+..     ++.+.+.+            |.+|..    ..+.++|+.+|+++.+..
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  150 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD----GADYTAAITFLDKILEVC  150 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            9999999999874     45566666            566654    678999999999998753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.60  E-value=0.0021  Score=60.16  Aligned_cols=112  Identities=13%  Similarity=-0.009  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHc-----CCHHHHHHhH------------HHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA-----GNVEACYTLG------------MIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI  177 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~-----G~~~A~~~LG------------~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~  177 (408)
                      ...++|+.+|+++.+.     .++.+.+.++            .+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+
T Consensus        85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  163 (359)
T 3ieg_A           85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVWDAELRELRAEC  163 (359)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            4467888888888775     4456666664            4444 578899999999998765  478889999998


Q ss_pred             HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |.. .|      ++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus       164 ~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          164 FIK-EG------EPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKL  217 (359)
T ss_dssp             HHH-TT------CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHH-CC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            865 34      788999999999876  578899999999976    67899999999998875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.60  E-value=0.00014  Score=58.60  Aligned_cols=81  Identities=20%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             cCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCC
Q 015393          149 LQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGY  221 (408)
Q Consensus       149 ~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~  221 (408)
                      .+++++|+.+|++|.+.+     ++.+.++||.+|.. .|      ++++|+.+|++|.+.  .++.+.+.||.+|..- 
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-   74 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LG------EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-   74 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-
Confidence            467889999999999874     56799999999975 34      899999999999886  6899999999999763 


Q ss_pred             CccccHHHHHHHHHHHHHc
Q 015393          222 GVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       222 Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |   +.++|+.+|++|.+.
T Consensus        75 g---~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           75 G---RYEQGVELLLKIIAE   90 (117)
T ss_dssp             T---CHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHh
Confidence            3   688999999999876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.55  E-value=0.0016  Score=52.18  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHHHHc--CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--Cc---HHHHHHHHHHHHcCCCCCC
Q 015393          117 NWSESAHRFLKLCADA--GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SH---AQALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~---~~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ...++|+.+|+++.+.  +++   .+.+.+|.+|+ ..+++++|+.+|+++...  .+   +.+++.+|.+|.. .|   
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g---   90 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EG---   90 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT---
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cC---
Confidence            3468899999988773  466   79999999998 689999999999999876  45   8999999999975 45   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 015393          187 NDKDLRAGVALCARAAFL--GHIDALRELGH  215 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~  215 (408)
                         ++++|+.+|+++...  +++.+...+..
T Consensus        91 ---~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           91 ---KNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             ---CHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence               899999999999875  44554444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.55  E-value=0.0024  Score=65.10  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .++|..+++++.+.  .++.+.+.||.+|. ..+++++|+++|+++.+.  .++.+++.|+.+|.. .|      ++++|
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A  426 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYL-CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-EG------EHDQA  426 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            45556666555432  45677777777776 567777777777777654  366777777777754 23      67777


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +++|+++.+.  .++.+.+.||.+|..    ..++++|+.+|+++.+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          427 ISAYTTAARLFQGTHLPYLFLGMQHMQ----LGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHTTTTCSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            7777777665  356677777777754    55777777777777653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.54  E-value=0.00036  Score=67.73  Aligned_cols=95  Identities=11%  Similarity=0.010  Sum_probs=79.5

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcH-------------------HHHHHHHHHHHcCCCCCCCccCHHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHA-------------------QALYSLAVIQFNGSGGSKNDKDLRAG  194 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~-------------------~A~~~Lg~~y~~G~Gv~~~~~d~~kA  194 (408)
                      .+.+++.+|..|+ ..+++.+|+.+|++|......                   .++++||.+|.. .|      ++.+|
T Consensus       178 ~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g------~~~~A  249 (338)
T 2if4_A          178 AADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LK------RYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TT------CCHHH
T ss_pred             HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cC------CHHHH
Confidence            3467889999988 789999999999999876432                   378999999974 34      78899


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          195 VALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       195 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.+|++|.+.  .++.+++++|.+|..    ..++++|+.+|++|.+.
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            9999999875  689999999999976    67999999999999764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.54  E-value=0.0002  Score=73.12  Aligned_cols=107  Identities=13%  Similarity=0.063  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|++|.+.  .++.++++||.+|. ..+++++|+.+|++|.+.  .++.++++||.+|.. .|      +++
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~~   91 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFR   91 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HT------CHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence            3468899999988775  57899999999998 689999999999999987  488999999999975 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHH--HHcCCCccccHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHC--LQDGYGVRQNIAEGRRFLV  235 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~  235 (408)
                      +|+++|++|.+.  .+..+...|+.+  |..    .++.++|+..|+
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence            999999999875  577889999888  543    466777777777

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.54  E-value=0.00026  Score=68.80  Aligned_cols=111  Identities=9%  Similarity=0.015  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHcCCH-------------------HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHH
Q 015393          119 SESAHRFLKLCADAGNV-------------------EACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVI  177 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G~~-------------------~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~  177 (408)
                      .++|+.+|+++.+....                   .++++||.+|+ ..+++++|+.+|++|.+.  .++.++|++|.+
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46788888888876533                   37899999998 688999999999999876  589999999999


Q ss_pred             HHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          178 QFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       178 y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |.. .|      ++++|+.+|++|.+.  ++..+...|+.+...   .....+++..+|.++...
T Consensus       274 ~~~-~g------~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~---~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          274 KAE-LG------QMDSARDDFRKAQKYAPDDKAIRRELRALAEQ---EKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHT-TT------CHHHHHHHHHHTTC---------------------------------------
T ss_pred             HHH-cC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCC
Confidence            975 45      899999999999775  688899999988643   345566777777776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.54  E-value=0.0007  Score=62.84  Aligned_cols=112  Identities=14%  Similarity=0.051  Sum_probs=94.0

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+++.||.+|.. .|      ++
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g------~~  256 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MS------QY  256 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hc------cH
Confidence            34578999999988765  57899999999998 689999999999999876  478999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--C------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          192 RAGVALCARAAFL--G------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      ++|+.+|+++.+.  .            ++.+.+.||.+|..    ..+.++|...|+++.+
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV----MNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH----TTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence            9999999999774  3            57899999999976    6788899888876544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.51  E-value=0.00077  Score=66.49  Aligned_cols=95  Identities=15%  Similarity=0.033  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHH------------------cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCAD------------------AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV  176 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe------------------~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~  176 (408)
                      ...++|+..|+++.+                  ..++.++++||.+|+ ..+++++|+.+|++|.+.  .++.+++++|.
T Consensus       237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            346788888888876                  356789999999998 689999999999999986  58999999999


Q ss_pred             HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +|.. .|      ++++|+.+|++|.+.  .+..+...|+.++..
T Consensus       316 ~~~~-~g------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          316 GWQG-LK------EYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHH-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9975 34      899999999999876  688999999998853

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.49  E-value=0.0012  Score=66.78  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=80.7

Q ss_pred             cCCHHHHHHHHHHHHHc--CC---------------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA--GN---------------VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAV  176 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~---------------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~  176 (408)
                      ....++|+.+|++|.+.  .+               ..++++||.+|+ ..+++++|+.+|++|.+.  .++.|+|++|.
T Consensus       281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  359 (457)
T 1kt0_A          281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGE  359 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            34568899999988764  45               689999999998 689999999999999886  58999999999


Q ss_pred             HHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          177 IQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       177 ~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +|.. .|      ++++|+.+|++|.+.  .+..++..|+.++..
T Consensus       360 a~~~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          360 AQLL-MN------EFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHH-TT------CHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHH-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9975 34      899999999999987  578899999999964

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.49  E-value=0.0002  Score=73.10  Aligned_cols=95  Identities=12%  Similarity=-0.052  Sum_probs=82.4

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+++.+|..|+ ..+++++|+++|++|.+.  .++.++++||.+|.. .|      ++++|+.+|++|.+.  .++.++
T Consensus         6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~l~p~~~~~~   77 (477)
T 1wao_1            6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TE------CYGYALGDATRAIELDKKYIKGY   77 (477)
T ss_dssp             HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCCHHHH
Confidence            345667788877 689999999999999876  478999999999975 34      899999999999986  689999


Q ss_pred             HHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          211 RELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       211 ~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++||.+|..    ..+.++|+.+|++|.+..
T Consensus        78 ~~lg~~~~~----~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           78 YRRAASNMA----LGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            999999976    689999999999999853

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.48  E-value=0.0015  Score=53.35  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--  204 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--  204 (408)
                      ..+++.||.+|. ..+++++|+.+|++|.+.    ++    ..++++||.+|.. .|      ++.+|+.+|+++.+.  
T Consensus         9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LG------EFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHHH
Confidence            457788999988 678999999999999865    33    2488999999975 34      899999999999763  


Q ss_pred             --CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          205 --GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       205 --G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        ++    ..+.+.+|.+|..    ..+.++|+.+|++|.+.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence              33    5678899999976    67999999999999863

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.47  E-value=0.001  Score=63.79  Aligned_cols=111  Identities=15%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHcC--C----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393          117 NWSESAHRFLKLCADAG--N----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS  182 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~  182 (408)
                      ...++|+.+|+++.+..  +    ..+++.||.+|+ ..+++++|+.+|++|.+.        ..+.+++.+|.+|.. .
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L  100 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-c
Confidence            35688999999988764  4    368889999998 689999999999998655        346789999999965 4


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccc--------------------HHHHHHHH
Q 015393          183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQN--------------------IAEGRRFL  234 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d--------------------~~~A~~w~  234 (408)
                      |      ++.+|+.+|++|.+.    ++    +.+.+.||.+|..    ..+                    +++|+.+|
T Consensus       101 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A          101 G------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            4      899999999999874    44    5589999999965    455                    89999999


Q ss_pred             HHHHH
Q 015393          235 VQANA  239 (408)
Q Consensus       235 ~kAA~  239 (408)
                      .+|.+
T Consensus       171 ~~al~  175 (406)
T 3sf4_A          171 EENLS  175 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.47  E-value=0.0034  Score=60.06  Aligned_cols=112  Identities=16%  Similarity=0.059  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHc
Q 015393          117 NWSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFN  180 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~  180 (408)
                      ...++|+.+|+++.+.    ++    ..+.++||.+|. ..+++++|+.+|++|.+.    ++    ..++++||.+|..
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            3467888888887654    43    348899999998 689999999999998754    22    6688999999975


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          181 GSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .|      ++++|+.+|++|.+.    ++    ..+...||.+|..    ..+.++|+.+|++|.+.
T Consensus       280 -~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          280 -LQ------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             -hC------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence             34      899999999999763    44    6688999999976    67999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.47  E-value=0.00077  Score=53.82  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=62.6

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      +++-||.||..++ ..+++..|+.||++|...         ..++..++||.+|.. .|      ++++|+.++++|...
T Consensus         4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g------~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QG------DLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHhc
Confidence            5678999999998 789999999999999874         357789999999974 45      899999999999875


Q ss_pred             --CCHHHHHHHH
Q 015393          205 --GHIDALRELG  214 (408)
Q Consensus       205 --G~~~A~~~Lg  214 (408)
                        .+..+..+++
T Consensus        76 ~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 DPEHQRANGNLK   87 (104)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCHHHHhhHH
Confidence              6888888887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.45  E-value=0.0022  Score=59.12  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHHHc--CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393          117 NWSESAHRFLKLCADA--GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS  182 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~  182 (408)
                      ...++|+.+|+++.+.  ++    ..+++.||.+|. ..+++++|+.+|++|.+.        ..+.+++.||.+|.. .
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~   96 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L   96 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-c
Confidence            3468899999988875  34    467889999998 688999999999998755        346789999999965 4


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccc--------------------HHHHHHHH
Q 015393          183 GGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQN--------------------IAEGRRFL  234 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d--------------------~~~A~~w~  234 (408)
                      |      ++.+|+.+|+++.+.    ++    ..+++.||.+|..    ..+                    +++|+.+|
T Consensus        97 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           97 G------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             c------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            4      899999999998763    44    4488999999965    445                    88999999


Q ss_pred             HHHHH
Q 015393          235 VQANA  239 (408)
Q Consensus       235 ~kAA~  239 (408)
                      ++|.+
T Consensus       167 ~~a~~  171 (338)
T 3ro2_A          167 EENLS  171 (338)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.45  E-value=0.0012  Score=65.42  Aligned_cols=114  Identities=15%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHhHHHHh--hccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          120 ESAHRFLKLCADA--GNVEACYTLGMIRF--YCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~--~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ++|+.+|+++.+.  .++++.+.+|.+++  +..++.++|++.|++|.+.  .++.+.++||..+..-..   ...++.+
T Consensus       155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~~~  231 (472)
T 4g1t_A          155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE---EGEEEGE  231 (472)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------CH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh---hhhHHHH
Confidence            4455555544432  34445554444433  1223344455555554433  244445555544432111   1114556


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |..+|++|...  .++.+.+.||.+|..    ..+..+|+.+|.+|.+.
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHh
Confidence            66666666553  466667777777754    56677777777777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.44  E-value=0.0018  Score=52.51  Aligned_cols=80  Identities=13%  Similarity=-0.033  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+.+|+++...  .++.++++||.+|.. .|      ++.
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~------~~~   94 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYD   94 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-Hh------hHH
Confidence            3467899999988764  58899999999998 689999999999999876  589999999999975 34      899


Q ss_pred             HHHHHHHHHHhC
Q 015393          193 AGVALCARAAFL  204 (408)
Q Consensus       193 kA~~~~~kAA~~  204 (408)
                      +|+.+|+++.+.
T Consensus        95 ~A~~~~~~a~~~  106 (137)
T 3q49_B           95 EAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.43  E-value=0.0016  Score=63.73  Aligned_cols=114  Identities=12%  Similarity=0.064  Sum_probs=94.5

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++.+.+.||.+|. ..+++++|+.+|+++.+.  .++.+++.||.+|.. .|      ++
T Consensus       156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~  227 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ-LG------DH  227 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CH
Confidence            34568899999988765  58999999999998 678999999999999865  689999999999975 34      89


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHH------------HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFL--GHIDALREL------------GHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++|+.+|+++...  .+......+            |.+|..    ..++++|+.+|+++.+..
T Consensus       228 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~  287 (450)
T 2y4t_A          228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTE  287 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            9999999999875  566666555            777765    678999999999998753

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.43  E-value=0.0019  Score=49.61  Aligned_cols=82  Identities=9%  Similarity=-0.073  Sum_probs=69.7

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCC-CCCCCc
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGS-GGSKND  188 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~-Gv~~~~  188 (408)
                      ....++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+.+|+++.+..    ++.++++||.+|.. . |     
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~-----   91 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEG-----   91 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSS-----
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhC-----
Confidence            34568899999988775  58899999999998 6889999999999999864    78999999999964 3 4     


Q ss_pred             cCHHHHHHHHHHHHhCC
Q 015393          189 KDLRAGVALCARAAFLG  205 (408)
Q Consensus       189 ~d~~kA~~~~~kAA~~G  205 (408)
                       ++++|+++|+++....
T Consensus        92 -~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           92 -KEVEAEIAEARAKLEH  107 (112)
T ss_dssp             -CSHHHHHHHHHHGGGC
T ss_pred             -CHHHHHHHHHHHhhcc
Confidence             7889999999998753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.42  E-value=0.0019  Score=64.72  Aligned_cols=114  Identities=14%  Similarity=0.082  Sum_probs=97.8

Q ss_pred             cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.+|+++.+.. ++.+.+.||.+|. ..+++++|+.+|+++.+.  .++.+++.+|.+|.. .|      ++.
T Consensus       256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~  327 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQ------DYK  327 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             cccHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cC------CHH
Confidence            345688999999887653 4789999999988 688999999999999876  578999999999974 34      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            999999999875  578999999999976    689999999999998763

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.41  E-value=0.0005  Score=59.39  Aligned_cols=113  Identities=8%  Similarity=-0.082  Sum_probs=85.8

Q ss_pred             cCCHHHHHHHHHHHHHcC-CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAG-NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G-~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.+|+++.+.. ++.....++.+......+...|+.+|++|.+.  +++.+.++||.+|.. .|      +++
T Consensus        53 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g------~~~  125 (176)
T 2r5s_A           53 TKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VG------RDE  125 (176)
T ss_dssp             TTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------cHH
Confidence            345688999999876554 56666666655442222233579999999876  589999999999965 45      899


Q ss_pred             HHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFLG----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       193 kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|+.+|+++.+..    ++.+.+.||.+|..    ..+.++|+..|+++..
T Consensus       126 ~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          126 EALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHHH
Confidence            9999999999874    36699999999965    5577789999998864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.40  E-value=0.00064  Score=64.11  Aligned_cols=114  Identities=9%  Similarity=-0.013  Sum_probs=85.8

Q ss_pred             cCCHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+..|+++.+  .+++++.+.||.+|. ..+++++|+.+|+++...  .+......++..+.. .+      +.
T Consensus       130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~-~~------~~  201 (287)
T 3qou_A          130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX-QA------AD  201 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH-HH------TS
T ss_pred             CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh-hc------cc
Confidence            3456888999987754  579999999999998 688999999999988654  233344444444432 22      23


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ..|+..|+++...  +++++.+.||.+|..    ..+.++|+..|+++....
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXD  249 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcc
Confidence            3678888888765  789999999999976    678999999999998853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.39  E-value=0.0011  Score=52.72  Aligned_cols=76  Identities=14%  Similarity=0.048  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHH
Q 015393          154 SGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAE  229 (408)
Q Consensus       154 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~  229 (408)
                      +++.+|+++.+.  .++.++++||.+|.. .|      ++.+|+.+|+++...  .++.+.+.||.+|..    ..+.++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HE------QFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHH
Confidence            578899998876  589999999999965 34      899999999999875  678999999999976    689999


Q ss_pred             HHHHHHHHHHc
Q 015393          230 GRRFLVQANAR  240 (408)
Q Consensus       230 A~~w~~kAA~~  240 (408)
                      |+.+|++|.+.
T Consensus        72 A~~~~~~al~~   82 (115)
T 2kat_A           72 ARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.39  E-value=0.0015  Score=60.18  Aligned_cols=111  Identities=16%  Similarity=0.054  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHHHc----CC----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcC
Q 015393          118 WSESAHRFLKLCADA----GN----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNG  181 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~----G~----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G  181 (408)
                      ..++|+.+++++.+.    ++    ..+.+++|.+|. ..+++++|+.+|+++.+.    ++    ..+++.+|.+|.. 
T Consensus       198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-  275 (338)
T 3ro2_A          198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-  275 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH-
Confidence            456777777766543    33    237777888777 567888888888887643    22    5677788888754 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .|      ++++|..+|++|.+.    ++    ..+.+.||.+|..    ..+.++|..+|++|.+.
T Consensus       276 ~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          276 LQ------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHC
T ss_pred             hc------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence            34      778888888887653    33    4477778888865    56888888888888764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.32  E-value=0.00051  Score=60.00  Aligned_cols=109  Identities=6%  Similarity=-0.025  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhc-c--------CCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc-CCCC
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYC-L--------QNRGSGASLMAKAAISS--HAQALYSLAVIQFN-GSGG  184 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~-~--------~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~-G~Gv  184 (408)
                      .++|+..++++.+.  .++++++++|.++... .        +.+++|+..|++|.+..  +++|+|+||..|.. |.-+
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            56788888888765  6999999999998821 1        23679999999999885  89999999999964 2100


Q ss_pred             CCC---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCH
Q 015393          185 SKN---DKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELA  243 (408)
Q Consensus       185 ~~~---~~d~~kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~  243 (408)
                      +..   ..++++|+++|++|.+..--.                .++.++++...+|.+.+..
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~----------------~~y~~al~~~~ka~el~~~  143 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDN----------------THYLKSLEMTAKAPQLHAE  143 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTC----------------HHHHHHHHHHHTHHHHHHH
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHhCHhccCc
Confidence            000   017899999999998863211                1334556666666665443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.31  E-value=0.00036  Score=60.95  Aligned_cols=92  Identities=12%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCC---CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CC
Q 015393          150 QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGS---KNDKDLRAGVALCARAAFL--GHIDALRELGHCLQD-GY  221 (408)
Q Consensus       150 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~---~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~  221 (408)
                      +.+++|+..|++|.+.  +++++++++|.++..-....   .....+++|+..|++|.+.  .+.+|+++||.+|.. |.
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            3467899999999877  59999999999986421100   0011467999999999987  589999999999964 32


Q ss_pred             Cccc------cHHHHHHHHHHHHHcC
Q 015393          222 GVRQ------NIAEGRRFLVQANARE  241 (408)
Q Consensus       222 Gv~~------d~~~A~~w~~kAA~~G  241 (408)
                      -++.      ++++|+.+|++|.+..
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhC
Confidence            2333      8999999999999864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.29  E-value=0.0033  Score=59.36  Aligned_cols=109  Identities=5%  Similarity=-0.039  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHc---CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHH-HHHHHHHHHHcCCCCCCCccCHHH
Q 015393          120 ESAHRFLKLCADA---GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQ-ALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       120 ~~A~~~l~~aAe~---G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~-A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ++|...|++|.+.   +++.+.+.+|.++. ..+++++|...|++|.+..  ++. +++++|.++.. .|      ++++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~------~~~~  152 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AE------GIKS  152 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HH------CHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hc------CHHH
Confidence            5666666666652   45566666666665 4566666666666666643  343 66666666543 22      5666


Q ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFLG--HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      |...|++|.+..  +......++.+...   ..++.++|+..|++|.+
T Consensus       153 A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~~~A~~~~~~al~  197 (308)
T 2ond_A          153 GRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLK  197 (308)
T ss_dssp             HHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Confidence            666666666643  23333333333211   12466667777776665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.18  E-value=0.0014  Score=51.40  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             cCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          165 SSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       165 ~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      -.++.+.++||.+|.. .|      ++++|+.+|+++.+.  .++.+++.||.+|..    ..+.++|+.+|++|.+.
T Consensus         4 p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLK-HD------NASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            3578999999999975 34      899999999999886  689999999999976    78999999999999853

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.17  E-value=0.0021  Score=57.75  Aligned_cols=99  Identities=12%  Similarity=-0.040  Sum_probs=80.2

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH  206 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~  206 (408)
                      ++++.|.+|..++ ..+++++|+.+|+++....  +   ..+++.||.+|.. .|      ++.+|+..|+++.+.  ++
T Consensus         3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NA------DLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHHCcCC
Confidence            5678999999988 6899999999999998752  2   5799999999975 34      899999999999875  33


Q ss_pred             H---HHHHHHHHHHHcC--------------CCccccHHHHHHHHHHHHHc
Q 015393          207 I---DALRELGHCLQDG--------------YGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 ~---~A~~~Lg~~y~~G--------------~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +   .|++.+|.+|..-              .--..+.++|+..|+++.+.
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence            3   4899999998641              01145899999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.12  E-value=0.0053  Score=57.92  Aligned_cols=113  Identities=10%  Similarity=0.004  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHcC--CHH-HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          117 NWSESAHRFLKLCADAG--NVE-ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~~~-A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ...++|...|+++.+..  ++. +.+++|.++. ..+++++|...|++|.+..  +......++.+.....|      ++
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~------~~  185 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DK  185 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC------CH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC------CH
Confidence            34688999999998754  565 8999999887 5788999999999999864  44555555555433334      88


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++|...|++|.+.  .++.+...++.++..    ..++++|+.+|++|...
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            9999999999874  688999999998865    46899999999999985

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.03  E-value=0.0036  Score=54.65  Aligned_cols=80  Identities=13%  Similarity=-0.017  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHcC---------CH-----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc---------CcHHHH--
Q 015393          117 NWSESAHRFLKLCADAG---------NV-----EACYTLGMIRFYCLQNRGSGASLMAKAAIS---------SHAQAL--  171 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G---------~~-----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~---------G~~~A~--  171 (408)
                      ...++|+..|++|.+..         +.     .+++++|.++. ..+++++|+.+|.+|.+.         .++.|+  
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~  103 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  103 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence            34688999999887654         22     39999999988 678999999999999977         688899  


Q ss_pred             --HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          172 --YSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       172 --~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                        |++|..|. +.|      ++++|+..|++|.+.
T Consensus       104 ~~~~rG~aL~-~lg------r~eEAl~~y~kAlel  131 (159)
T 2hr2_A          104 AVYSRALALD-GLG------RGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHH-HTT------CHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHH-HCC------CHHHHHHHHHHHHhc
Confidence              99999995 456      899999999999764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.99  E-value=0.0055  Score=45.63  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQF  179 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  179 (408)
                      ...++|+.+|+++.+.  .++.+.++||.+|. ..+++++|+.+|+++.+.  +++.++++||.+|.
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3467899999988775  58999999999998 689999999999999876  68999999999985

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.94  E-value=0.0093  Score=57.16  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHH----cCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC----------cHHHHHHHHHHH
Q 015393          117 NWSESAHRFLKLCAD----AGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAISS----------HAQALYSLAVIQ  178 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe----~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G----------~~~A~~~Lg~~y  178 (408)
                      ...++|..+++++.+    .|++    .+.++||.+|. ..+++.+|+.+|+++.+..          ...++++||.+|
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            346788888887764    4555    34788999988 6899999999999987642          345778899988


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAFL----G---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~----G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .. .|      ++++|..+|+++.+.    |   ...+++.||.++..    ..|.++|..+|+++...
T Consensus       146 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          146 WA-WA------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HH-hc------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            64 35      899999999999763    2   24678889999865    78999999999999753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.89  E-value=0.011  Score=56.77  Aligned_cols=112  Identities=20%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHc---CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcH----HHHHHHHHHHHcC
Q 015393          117 NWSESAHRFLKLCADA---GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHA----QALYSLAVIQFNG  181 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~---G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~----~A~~~Lg~~y~~G  181 (408)
                      ...++|..+++++.+.   +++    .+.+.+|.+|. ..+++++|..+|++|...    |++    .+.++||.+|.. 
T Consensus        28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-  105 (373)
T 1hz4_A           28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  105 (373)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            3467888888887764   333    26788898887 679999999999998753    443    457889999865 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----G------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----G------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .|      ++.+|..+|+++...    |      ...++..||.+|..    ..++++|..+|++|.+.
T Consensus       106 ~G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A          106 QG------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV  164 (373)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CC------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence            45      899999999999763    2      24567789999865    57999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.87  E-value=0.0074  Score=56.57  Aligned_cols=80  Identities=13%  Similarity=-0.033  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.+++++|.+|. ..+++++|+.+|++|.+.  +++.++++||.+|.. .|      +++
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~   89 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYD   89 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence            3468899999988764  58999999999998 689999999999999886  589999999999975 44      899


Q ss_pred             HHHHHHHHHHhC
Q 015393          193 AGVALCARAAFL  204 (408)
Q Consensus       193 kA~~~~~kAA~~  204 (408)
                      +|+.+|++|.+.
T Consensus        90 ~A~~~~~~al~l  101 (281)
T 2c2l_A           90 EAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.76  E-value=0.01  Score=50.48  Aligned_cols=80  Identities=15%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHhHHH-HhhccCCH--HHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          118 WSESAHRFLKLCAD--AGNVEACYTLGMI-RFYCLQNR--GSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~-y~~~~~d~--~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      ..++|+.+|+++.+  ..++.+.+.+|.+ |+ ..+++  ++|+.+|+++.+.  .++.++++||.+|.. .|      +
T Consensus        59 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~  130 (177)
T 2e2e_A           59 DYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QA------N  130 (177)
T ss_dssp             CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------C
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------c
Confidence            46789999998865  4689999999999 65 56777  9999999999876  578999999999976 34      8


Q ss_pred             HHHHHHHHHHHHhCC
Q 015393          191 LRAGVALCARAAFLG  205 (408)
Q Consensus       191 ~~kA~~~~~kAA~~G  205 (408)
                      +++|+.+|+++.+..
T Consensus       131 ~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          131 YAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999998863

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.71  E-value=0.0033  Score=48.23  Aligned_cols=64  Identities=9%  Similarity=-0.055  Sum_probs=48.4

Q ss_pred             HHhHHHHhhccCCHHHHHHHHHHHHhc--CcHH-HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 015393          139 YTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQ-ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDAL  210 (408)
Q Consensus       139 ~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~-A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~  210 (408)
                      +.+|..|+ ..+++++|+.+|+++.+.  .++. +++++|.+|.. .|      ++++|+.+|+++.+.  .++.+.
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LG------DWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCcHHHH
Confidence            56677776 578888999999888776  4677 88889988864 33      788899999988875  345554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.50  E-value=0.058  Score=61.68  Aligned_cols=101  Identities=12%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393          120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA  199 (408)
Q Consensus       120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~  199 (408)
                      ++|..++++.   .++.+++.||..++ ..+++++|++.|.+|   +++.+++.++.++.. .|      +++.|++||.
T Consensus      1093 drAiE~Aerv---n~p~vWsqLAKAql-~~G~~kEAIdsYiKA---dD~say~eVa~~~~~-lG------kyEEAIeyL~ 1158 (1630)
T 1xi4_A         1093 DRAYEFAERC---NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA---DDPSSYMEVVQAANT-SG------NWEELVKYLQ 1158 (1630)
T ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHH-hCCCHHHHHHHHHhc---CChHHHHHHHHHHHH-cC------CHHHHHHHHH
Confidence            3444444433   67889999999988 688999999999997   899999999999965 44      7889999997


Q ss_pred             HHHhC-----------------------------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          200 RAAFL-----------------------------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       200 kAA~~-----------------------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      +|-..                             .+....+.+|..|+.    ..++++|..+|.+|-
T Consensus      1159 mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A         1159 MARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNVS 1222 (1630)
T ss_pred             HHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhh
Confidence            76532                             223345566666655    778889999998874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.47  E-value=0.006  Score=57.33  Aligned_cols=112  Identities=10%  Similarity=-0.076  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .+......++..+. ..++...|+..|++|.+.  +++.+.++||.+|.. .|      ++
T Consensus       164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~-~g------~~  235 (287)
T 3qou_A          164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ-VG------RN  235 (287)
T ss_dssp             TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH-cc------cH
Confidence            44578899999877543  23334444444444 445566789999998876  589999999999975 34      88


Q ss_pred             HHHHHHHHHHHhC--CC--HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          192 RAGVALCARAAFL--GH--IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~--~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      ++|+..|+++...  ++  ..+...|+.+|..    ..+..+|..+|+++..
T Consensus       236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          236 EEALELLFGHLRXDLTAADGQTRXTFQEILAA----LGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence            9999999999885  45  8899999999965    4566789999998865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.012  Score=45.32  Aligned_cols=64  Identities=9%  Similarity=-0.031  Sum_probs=55.7

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ++.+++.+|.+|.. .|      ++.+|+.+|++|.+.  .++.+.+++|.+|..    ..+.++|+.+|++|.+..
T Consensus         3 ~~~~~~~~g~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK-QG------LYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            46788999999975 34      899999999999875  689999999999976    679999999999999864

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=96.37  E-value=0.0018  Score=45.35  Aligned_cols=44  Identities=30%  Similarity=0.479  Sum_probs=36.2

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHH
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVL  103 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~  103 (408)
                      ...|..||+|++..||+.+.     +.|+..+..+||.|+.+..++.++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~-----~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLC-----LPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSC-----GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCCHHHCCHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhCChHHH
Confidence            45689999999999999884     679999999999999998776543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.15  E-value=0.023  Score=44.97  Aligned_cols=70  Identities=9%  Similarity=0.077  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      .+.-+|.||..++.- |      ++..|+.||++|.+.         ..+.....||.+|..    ..|+++|+.++++|
T Consensus         4 sa~dc~~lG~~~~~~-~------~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            4 TAEDCFELGKVAYTE-A------DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKL   72 (104)
T ss_dssp             CHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc-c------chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence            467899999999762 3      899999999999873         346788999999986    67899999999999


Q ss_pred             HHcC--CHHHHh
Q 015393          238 NARE--LAAVLS  247 (408)
Q Consensus       238 A~~G--~~~A~~  247 (408)
                      ....  +..+..
T Consensus        73 l~l~P~~~~~~~   84 (104)
T 2v5f_A           73 LELDPEHQRANG   84 (104)
T ss_dssp             HHHCTTCHHHHH
T ss_pred             HhcCCCCHHHHh
Confidence            8653  444433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.90  E-value=0.12  Score=59.18  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      .+..++|+.+|+++-  -+..|.   ..++. ..+++++|++++++.   ..+..+++||..++.. |      .+++|+
T Consensus      1062 lglyEEAf~IYkKa~--~~~~A~---~VLie-~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~-G------~~kEAI 1125 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFD--VNTSAV---QVLIE-HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQK-G------MVKEAI 1125 (1630)
T ss_pred             CCCHHHHHHHHHHcC--CHHHHH---HHHHH-HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC-C------CHHHHH
Confidence            344789999999873  222222   22232 467899999999977   6799999999999864 4      789999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          196 ALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       196 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ..|.+|   +++.+++++|.++..    ..++++|++||.+|-+..
T Consensus      1126 dsYiKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1126 DSYIKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             HHHHhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Confidence            999997   999999999999977    779999999999988654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.86  E-value=0.07  Score=54.10  Aligned_cols=47  Identities=6%  Similarity=-0.063  Sum_probs=23.8

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          190 DLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       190 d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +.++|...|++|.+.  .++.....++.++..    ..+.++|+.+|++|...
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHS
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhc
Confidence            445555555555443  345555555555432    34555555555555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.72  E-value=0.033  Score=53.04  Aligned_cols=83  Identities=18%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             hhhcCCHHHHHHHHHHHHHcCCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHcCCC
Q 015393          113 IKANNWSESAHRFLKLCADAGNV----EACYTLGMIRFYCLQNRGSGASLMAKAAISS-----HAQALYSLAVIQFNGSG  183 (408)
Q Consensus       113 ~~~~~~~~~A~~~l~~aAe~G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~G  183 (408)
                      +..+.| ++|+.+|+.+....++    .+.|+||.++. ..+++++|+.||+++....     .+++++++|.++.. .|
T Consensus       146 ~~~~r~-~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lG  222 (282)
T 4f3v_A          146 GAAERW-TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QG  222 (282)
T ss_dssp             HHTTCH-HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HT
T ss_pred             HHcCCH-HHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cC
Confidence            334444 7788888866655544    48999999998 6899999999999998665     45799999999964 45


Q ss_pred             CCCCccCHHHHHHHHHHHHhC
Q 015393          184 GSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       184 v~~~~~d~~kA~~~~~kAA~~  204 (408)
                            +.++|...|+++...
T Consensus       223 ------r~deA~~~l~~a~a~  237 (282)
T 4f3v_A          223 ------NESAAVALLEWLQTT  237 (282)
T ss_dssp             ------CHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHhc
Confidence                  788999999999775

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.66  E-value=0.1  Score=45.02  Aligned_cols=87  Identities=7%  Similarity=-0.011  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHH--cCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          121 SAHRFLKLCAD--AGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .+..-|....+  .-+.++.|++|..+..  ...+..+|+.+|+...+..    +.++.|+||+.|.. .|      |+.
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~------~Y~   88 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------EYE   88 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TS------CHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-cc------CHH
Confidence            34445555555  3478999999999883  2346779999999999887    47899999999954 44      999


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELG  214 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg  214 (408)
                      +|.+|++++.+.  +|..|+.-.-
T Consensus        89 ~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH
Confidence            999999999875  5666665443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.62  E-value=0.16  Score=52.04  Aligned_cols=111  Identities=8%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHc-------CCH---HHHHHhHHHHhhccCCHHHHHHHHHHHHhc-----C--c---HHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA-------GNV---EACYTLGMIRFYCLQNRGSGASLMAKAAIS-----S--H---AQALYSLA  175 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~-------G~~---~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg  175 (408)
                      ....++|+.+++++.+.       .|+   ..+.+||.+|. ..+++++|..+|++|.+-     |  |   +.++++||
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34468888888888764       344   58899999998 689999999999998754     2  4   44889999


Q ss_pred             HHHHcCCCCCCCccCHHHHHHHHHHHHh-------CCCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHHH
Q 015393          176 VIQFNGSGGSKNDKDLRAGVALCARAAF-------LGHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       176 ~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-------~G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA  238 (408)
                      .+|.. .|      ++++|..+|++|.+       ..|+.   .+..|+.++..    .+-+.+|...|.+|-
T Consensus       401 ~~~~~-~G------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          401 LTNWH-AG------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHH-TT------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHH-CC------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            99976 35      88999999999976       24554   44566666643    344677888887773

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.53  E-value=0.063  Score=41.94  Aligned_cols=67  Identities=15%  Similarity=-0.083  Sum_probs=38.1

Q ss_pred             cHHHHHHHHHHHHc-CCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          167 HAQALYSLAVIQFN-GSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~-G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +++.++.+|.++.. +.|.     ...+|..+|++|...  .++.|.+.||..++.    ..|+.+|+.+|++..++..
T Consensus         5 ~~~~~~~~a~al~~~~~~~-----~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQA-----MTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTC-----CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence            45555566655532 2221     334666666666554  566666666666655    5666666666666665443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.28  E-value=0.19  Score=50.88  Aligned_cols=109  Identities=9%  Similarity=0.026  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHH--cCCHHHHHHhHHHHhh------ccCCHH-------HHHHHHHHHHh---cCcHHHHHHHHHHHHcCC
Q 015393          121 SAHRFLKLCAD--AGNVEACYTLGMIRFY------CLQNRG-------SGASLMAKAAI---SSHAQALYSLAVIQFNGS  182 (408)
Q Consensus       121 ~A~~~l~~aAe--~G~~~A~~~LG~~y~~------~~~d~~-------~A~~~~~kAA~---~G~~~A~~~Lg~~y~~G~  182 (408)
                      .++..|++|..  ..++++++.+|.++..      ..++.+       +|+..|++|..   -.++...+.++.++.. .
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-R  334 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-c
Confidence            56667777765  4688888888888773      146655       88888888875   2578888888888764 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHhCC--CH-HHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          183 GGSKNDKDLRAGVALCARAAFLG--HI-DALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~G--~~-~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |      ++++|...|+++.+..  ++ .+...++.++..    ..++++|+..|.+|.+.
T Consensus       335 g------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          335 M------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKARED  385 (530)
T ss_dssp             T------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTC
T ss_pred             C------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhc
Confidence            4      7788888888888764  33 467777777643    35677788888887764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.25  E-value=0.1  Score=49.92  Aligned_cols=100  Identities=13%  Similarity=-0.027  Sum_probs=79.7

Q ss_pred             cCCHHHHHHhHHHHhh---c-c------CCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcC----CCCCCCccCHHH
Q 015393          132 AGNVEACYTLGMIRFY---C-L------QNRGSGASLMAKAAISS----HAQALYSLAVIQFNG----SGGSKNDKDLRA  193 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~---~-~------~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G----~Gv~~~~~d~~k  193 (408)
                      ..++++.|.+|.....   . .      .....+...+++|.+..    +..|+..||.+|..=    .|      |.++
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG------d~ek  222 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG------GMEK  222 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC------CHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC------CHHH
Confidence            3468899999988762   1 1      34568999999999885    466999999999772    34      8899


Q ss_pred             HHHHHHHHHhC---CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL---GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |.++|++|.+.   |++++.+.+|..|..   ..+|.+++.+++++|...
T Consensus       223 A~~~ferAL~LnP~~~id~~v~YA~~l~~---~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          223 AHTAFEHLTRYCSAHDPDHHITYADALCI---PLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHCCTTCSHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHH---hcCCHHHHHHHHHHHHcC
Confidence            99999999885   359999999999843   137999999999999873

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.14  E-value=0.1  Score=40.69  Aligned_cols=68  Identities=13%  Similarity=-0.019  Sum_probs=52.3

Q ss_pred             cCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393          132 AGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH  206 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~  206 (408)
                      ..+++..+.+|.++++  ......+|..+|++|...  .++.|.+.||.+++. .|      ++.+|+.+|++..++..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g------~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SF------RFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCC
Confidence            3577888888888763  234468899999988766  588899999998876 34      88899999998887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.13  E-value=0.096  Score=52.76  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=66.0

Q ss_pred             cCCHHHHHHHHHHHHhc-----C--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-----CC--CHH---
Q 015393          149 LQNRGSGASLMAKAAIS-----S--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-----LG--HID---  208 (408)
Q Consensus       149 ~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-----~G--~~~---  208 (408)
                      .+++++|+.+|+++.+.     |  |   ...+.+||.+|.. .|      ++++|..+|++|.+     .|  |++   
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g------~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQ------DWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hc------CHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            46889999999999764     2  3   4578899999975 45      89999999999986     34  544   


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .+++||.+|..    ..++++|..+|++|.+
T Consensus       384 ~l~nLa~~~~~----qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          384 MWLKLGRLYMG----LENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence            78999999976    6689999999999987

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.82  E-value=0.17  Score=43.56  Aligned_cols=89  Identities=10%  Similarity=0.029  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcc
Q 015393          151 NRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG----HIDALRELGHCLQDGYGVR  224 (408)
Q Consensus       151 d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~  224 (408)
                      +...+.+-|.++...|  +.+++|++|..+..- .   ...|+.+++.+|+...+..    +.++.|+||..|..    .
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S-~---~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l   84 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRS-K---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L   84 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-S---SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----c
Confidence            3456677788777754  689999999999762 2   3448899999999999887    36799999999976    7


Q ss_pred             ccHHHHHHHHHHHHHcC--CHHHHh
Q 015393          225 QNIAEGRRFLVQANARE--LAAVLS  247 (408)
Q Consensus       225 ~d~~~A~~w~~kAA~~G--~~~A~~  247 (408)
                      +|+.+|++|+.++.+..  +..|..
T Consensus        85 ~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            89999999999998754  455544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.50  E-value=0.083  Score=40.02  Aligned_cols=60  Identities=12%  Similarity=0.011  Sum_probs=49.7

Q ss_pred             HHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          171 LYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID-ALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       171 ~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~-A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+++|..|.. .|      ++.+|+.+|+++.+.  .++. +.+.+|.+|..    ..+.++|+.+|++|.+..
T Consensus         3 ~~~~a~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            3 QLKTIKELIN-QG------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             THHHHHHHHH-HT------CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            3567777753 23      899999999999875  5788 99999999976    679999999999999754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.86  E-value=0.29  Score=49.02  Aligned_cols=81  Identities=12%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             ccCCHHHHHHHHHHHHhc-----C--c---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh-----C--CCHH--
Q 015393          148 CLQNRGSGASLMAKAAIS-----S--H---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF-----L--GHID--  208 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~-----G--~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~-----~--G~~~--  208 (408)
                      .++++++|+.+|+++.+.     |  |   ...+.+||.+|.. .|      ++++|..+|+++.+     .  .|+.  
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g------~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LG------LLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            467999999999999865     2  3   4588899999965 35      89999999999976     2  3444  


Q ss_pred             -HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          209 -ALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       209 -A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       .+++||.+|..    ..++++|..+|++|.+
T Consensus       372 ~~l~nLa~~~~~----~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLH----QGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence             78999999977    6689999999999987

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.56  E-value=0.22  Score=47.95  Aligned_cols=110  Identities=5%  Similarity=-0.031  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHcCCCCCCCccCHHHHH
Q 015393          122 AHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SHAQALYSLAVIQFNGSGGSKNDKDLRAGV  195 (408)
Q Consensus       122 A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~  195 (408)
                      ++..|++.++.  .+..+.+.||.+|. ..+|+++|++|+.+....    ++.+++..++.+|.. .|      +..+|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~------r~d~A~  156 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NN------NVSTAS  156 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CC------CHHHHH
Confidence            55666655553  46677788888888 578999999999988765    478888888888876 33      677888


Q ss_pred             HHHHHHHhCCC------HHHHHHHHHH--HH-cCCCccccHHHHHHHHHHHHHcCC
Q 015393          196 ALCARAAFLGH------IDALRELGHC--LQ-DGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       196 ~~~~kAA~~G~------~~A~~~Lg~~--y~-~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      +.+++..+...      -.....|+..  .. .|.   .+..+|+..|++.++...
T Consensus       157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCC
Confidence            88887765543      3445555533  21 121   357788888888877643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.04  E-value=0.83  Score=44.01  Aligned_cols=110  Identities=10%  Similarity=0.063  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHc----CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHcCC
Q 015393          119 SESAHRFLKLCADA----GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFNGS  182 (408)
Q Consensus       119 ~~~A~~~l~~aAe~----G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~  182 (408)
                      .++|..+++++...    ++.    .....+|.++. ..+++++++.+++++...        +......+||.+|.. .
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~  148 (434)
T 4b4t_Q           71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-K  148 (434)
T ss_dssp             HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-c
Confidence            46677777655431    221    23344565554 567888888888888754        235677788888863 4


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          183 GGSKNDKDLRAGVALCARAAFL--------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      |      ++.+|..++.++...        ..++++..+|.+|..    .+|+.+|..+|++|...
T Consensus       149 g------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          149 K------QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTA  204 (434)
T ss_dssp             T------CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             c------ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHH
Confidence            4      788888888888772        235677788888865    88888888888888765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=92.99  E-value=0.74  Score=43.97  Aligned_cols=110  Identities=12%  Similarity=0.038  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHc--CCHHHHHHhHHHHhhccC-----CHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          121 SAHRFLKLCADA--GNVEACYTLGMIRFYCLQ-----NRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       121 ~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~-----d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      +++.++.++.+.  .|..|.+..+.+......     -++++++++.++...  ++..|.+.++.++.....      ..
T Consensus       164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~------~~  237 (306)
T 3dra_A          164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR------SI  237 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC------CG
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC------Ch
Confidence            667777766654  477788777777663211     167888888888765  578888888888765432      33


Q ss_pred             HHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          192 RAGVALCARAAFLG-----HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       192 ~kA~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .....++.+..+.+     ++.|...|+.+|..    ..+.++|++.|.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~----~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ----QKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Confidence            45556777666654     77888888888864    46888899999988864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=92.98  E-value=0.034  Score=53.22  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=42.8

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhcch
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASK  108 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~  108 (408)
                      +++|+.||+|++..||+.|     +|.|+..+..+|+.|+.++.++.++.....
T Consensus         2 ~~~l~~LP~ei~l~IlsfL-----~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFL-----SPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTS-----CHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            4579999999999999988     688999999999999999999987765443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=92.70  E-value=1.5  Score=45.32  Aligned_cols=116  Identities=8%  Similarity=-0.068  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhh-ccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFY-CLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~-~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      .++++.++.++.+.  .+..|++.-+.++.. ...+++++++++.++.+..  +..|+++-+.++..- |.     ..++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~~-----~~~~  162 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AV-----APAE  162 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CC-----CHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC-----ChHH
Confidence            57889999988875  489999999998873 2237899999999999875  788999999888653 21     5789


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcC--C--------CccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDG--Y--------GVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~--------Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +++++.++.+.  .+..|.+..+.++..=  .        .....++++++++.+|...
T Consensus       163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            99999999987  6899999999998751  1        1125679999999999974

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=92.54  E-value=2.6  Score=41.47  Aligned_cols=113  Identities=10%  Similarity=-0.046  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhh----ccCCHH--HHHHHHHHHH-----hcCcHHHHHHHHHHHHcCCCCC
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFY----CLQNRG--SGASLMAKAA-----ISSHAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~----~~~d~~--~A~~~~~kAA-----~~G~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      ..+|+.+|++|.+  .+++.|+-.|++.|..    ...+..  .++.--.+++     ...++.++..++.++.. .|  
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~g--  291 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KG--  291 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HT--
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CC--
Confidence            4689999998865  5788999988888861    111212  2222111122     12467777777776642 24  


Q ss_pred             CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          186 KNDKDLRAGVALCARAAFLG-HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       186 ~~~~d~~kA~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                          ++++|+.++++|...+ +..++..+|.++..    ..+.++|+.+|.+|....-
T Consensus       292 ----d~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          292 ----KTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSC
T ss_pred             ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC
Confidence                8999999999999875 44456678888854    7899999999999998654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.43  E-value=1.9  Score=41.27  Aligned_cols=120  Identities=10%  Similarity=-0.015  Sum_probs=86.3

Q ss_pred             cCCHHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc------HHHHHHHHHH--H-HcCC
Q 015393          116 NNWSESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH------AQALYSLAVI--Q-FNGS  182 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~------~~A~~~Lg~~--y-~~G~  182 (408)
                      ....++|+.|+.+..+.    ++.++...+..+|+ -.++.++|.+.+++..+...      -....+|+..  . ..|.
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            45689999999998776    58899999999998 68899999999998766643      3555666543  2 2343


Q ss_pred             CCCCCccCHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHH------------HcCCHHHH
Q 015393          183 GGSKNDKDLRAGVALCARAAFLG-H---IDALRELGHCLQDGYGVRQNIAEGRRFLVQAN------------ARELAAVL  246 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~G-~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA------------~~G~~~A~  246 (408)
                      +      ++..|+..|+..++.. +   +...++   ++..    ..++++|...+++..            +..++.++
T Consensus       192 ~------~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          192 E------TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             S------TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             c------cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            3      5669999999998774 3   334444   4433    478999999987543            25677777


Q ss_pred             hhh
Q 015393          247 SSA  249 (408)
Q Consensus       247 ~~~  249 (408)
                      .+.
T Consensus       259 aN~  261 (310)
T 3mv2_B          259 ANQ  261 (310)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.25  E-value=0.61  Score=44.48  Aligned_cols=81  Identities=9%  Similarity=-0.114  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHhHHHHhhc----cCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCC
Q 015393          119 SESAHRFLKLCADAG----NVEACYTLGMIRFYC----LQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKN  187 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G----~~~A~~~LG~~y~~~----~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~  187 (408)
                      ...|...++++.+..    +..|+..||.+|..+    -+|.++|.++|++|.+.+   +..+.|.+|..|..-.|    
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g----  254 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN----  254 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT----
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC----
Confidence            457888888888764    456999999999854    489999999999998863   49999999999976555    


Q ss_pred             ccCHHHHHHHHHHHHhCC
Q 015393          188 DKDLRAGVALCARAAFLG  205 (408)
Q Consensus       188 ~~d~~kA~~~~~kAA~~G  205 (408)
                        |.+.+.+++++|....
T Consensus       255 --d~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          255 --NRAGFDEALDRALAID  270 (301)
T ss_dssp             --CHHHHHHHHHHHHHCC
T ss_pred             --CHHHHHHHHHHHHcCC
Confidence              8999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.87  E-value=1.1  Score=43.11  Aligned_cols=111  Identities=6%  Similarity=-0.062  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHc----C----CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHc
Q 015393          117 NWSESAHRFLKLCADA----G----NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--------SHAQALYSLAVIQFN  180 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~----G----~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~  180 (408)
                      +..++++.+++++.+.    +    -.....+||.+|. ..+++.+|+.+++++...        ...++...+|.+|..
T Consensus       109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            4467888888776542    2    3568899999998 689999999999988643        346788999999964


Q ss_pred             CCCCCCCccCHHHHHHHHHHHHhC----CCH-----HHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          181 GSGGSKNDKDLRAGVALCARAAFL----GHI-----DALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       181 G~Gv~~~~~d~~kA~~~~~kAA~~----G~~-----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       .|      |+.+|..+|++|-..    +++     .....+|.+|.    ..+|+.+|..+|.++-+
T Consensus       188 -~~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          188 -LR------NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC----EDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHH
T ss_pred             -hC------cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHH
Confidence             34      999999999998642    332     23344555553    37899999999999875

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=90.91  E-value=0.11  Score=49.82  Aligned_cols=44  Identities=20%  Similarity=0.465  Sum_probs=37.6

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHH-HHHHHHHHHHHhhcCchHH
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFV-NVLITCKRMNGLALNSLVL  103 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~-~a~l~ck~~~~~~~~~~~~  103 (408)
                      ...+..||+||+.+||+.|.     +.+++ ...++||+|+.+..++.++
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp-----~~~L~~r~~~VCk~Wr~l~~~~~~w   92 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELP-----ATELVQACRLVCLRWKELVDGAPLW   92 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSC-----HHHHHHTGGGTCHHHHHHHTSHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCC-----HHHHHHHHHHHhHHHHHHhcChHHH
Confidence            44789999999999999984     56898 9999999999998776553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=90.01  E-value=3.7  Score=42.44  Aligned_cols=124  Identities=9%  Similarity=-0.064  Sum_probs=96.9

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCC---------HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCC
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQN---------RGSGASLMAKAAISS--HAQALYSLAVIQFNGS  182 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d---------~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~  182 (408)
                      +++.++|+.++.++.+.  .+..|++.-|.++.....+         ++++++++.++.+..  +..|++.-+.++..- 
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l-  120 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-  120 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence            45778999999988875  4889999999888743332         899999999999874  888999999888653 


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHHHh
Q 015393          183 GGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAVLS  247 (408)
Q Consensus       183 Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~~  247 (408)
                      |    ..+++++++++.++.+.  -+..|.+.-+.++..-   ....++++.++.++.+..  +..|..
T Consensus       121 ~----~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l---~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          121 P----EPNWARELELCARFLEADERNFHCWDYRRFVAAQA---AVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             S----SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---CCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             c----cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCCccHHH
Confidence            2    11678999999999986  5888999998888651   236789999999998753  444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=87.38  E-value=9.6  Score=36.64  Aligned_cols=123  Identities=10%  Similarity=-0.059  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCC-------CCC
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGG-------SKN  187 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv-------~~~  187 (408)
                      .++++.++.++.+.  .|..|.+.-+.+........+++++++.++.+.  .+..|.++.+.++..-...       ...
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~  205 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP  205 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence            46788888877764  588898888888763333368999999999877  5888999998887542110       001


Q ss_pred             ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcc-------ccHHHHHHHHHHHHHcC
Q 015393          188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVR-------QNIAEGRRFLVQANARE  241 (408)
Q Consensus       188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~-------~d~~~A~~w~~kAA~~G  241 (408)
                      ...+.++++++.+|...  +|..|.+.+..++..+.|..       .-+++++.++.+..+..
T Consensus       206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~  268 (331)
T 3dss_A          206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE  268 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence            12478899999999865  78899988888888876643       33678888888877643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=86.50  E-value=0.97  Score=45.63  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393          120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA  199 (408)
Q Consensus       120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~  199 (408)
                      +++..+++    ..+..+.+.+|..++ ..+.+++|..+|.++      .....||.+|.. .|      ++..|++.|+
T Consensus       111 ~e~e~f~~----~pn~~a~~~IGd~~~-~~g~yeeA~~~Y~~a------~n~~~LA~~L~~-Lg------~yq~AVea~~  172 (449)
T 1b89_A          111 AELEEFIN----GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNV------SNFGRLASTLVH-LG------EYQAAVDGAR  172 (449)
T ss_dssp             HHHTTTTT----CC-----------------CTTTHHHHHHHT------TCHHHHHHHHHT-TT------CHHHHHHHHH
T ss_pred             HHHHHHHc----CCcHHHHHHHHHHHH-HcCCHHHHHHHHHHh------hhHHHHHHHHHH-hc------cHHHHHHHHH
Confidence            33555553    245568888888777 678888888888877      466678888754 34      7888999999


Q ss_pred             HHHhCCCHHH
Q 015393          200 RAAFLGHIDA  209 (408)
Q Consensus       200 kAA~~G~~~A  209 (408)
                      +|   +++..
T Consensus       173 KA---~~~~~  179 (449)
T 1b89_A          173 KA---NSTRT  179 (449)
T ss_dssp             HH---TCHHH
T ss_pred             Hc---CCchh
Confidence            88   56743

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=84.41  E-value=14  Score=35.01  Aligned_cols=118  Identities=11%  Similarity=-0.035  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhcC--cHHHHHHHHHHH----HcCCCCCCC
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAISS--HAQALYSLAVIQ----FNGSGGSKN  187 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y----~~G~Gv~~~  187 (408)
                      .++++|+..+.++.+.  .+..|.+.-|.++.... .++++++.++.++....  +..+.+.-+.++    ... +..  
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l-~~~--  123 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN-NND--  123 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT-TTC--
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc-ccc--
Confidence            4556666666666554  46677777777666333 47777777777776653  566666666666    322 101  


Q ss_pred             ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          188 DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       188 ~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                       .++.+++.++.++.+.  .+..|.+.-+.++.. .|. -+.++++.++.++.+.
T Consensus       124 -~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~-~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A          124 -FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-FDL-HNDAKELSFVDKVIDT  175 (306)
T ss_dssp             -CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC-TTCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcc-cChHHHHHHHHHHHHh
Confidence             1566777777777764  466677666666654 111 1123666777777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.25  E-value=10  Score=31.28  Aligned_cols=61  Identities=8%  Similarity=0.072  Sum_probs=26.8

Q ss_pred             HHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcCcH----HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHH
Q 015393          135 VEACYTLGMIRFY--CLQNRGSGASLMAKAAISSHA----QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA  202 (408)
Q Consensus       135 ~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA  202 (408)
                      .++.|+++..+..  ...+..+++.+++.-...+++    +..|.||+-|.. .|      |+.+|.+++....
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg------~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------EYEKALKYVRGLL  101 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHH
Confidence            4455555444442  122333455555554444433    244444444432 22      4555555544443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=82.76  E-value=0.63  Score=45.43  Aligned_cols=45  Identities=29%  Similarity=0.487  Sum_probs=39.2

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHh
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLS  104 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~  104 (408)
                      .++|+.||++++..||+.|     ++.|+..+..+|+.|+.+..++.++.
T Consensus        16 ~d~~~~lp~e~~~~i~~~l-----~~~~l~~~~~v~~~~~~~~~~~~~w~   60 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFL-----EPKDLLQAAQTCRYWRILAEDNLLWR   60 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTS-----CHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             CChhHHCCHHHHHHHHHhC-----CHHHHHHHHHHhHHHHhhcCchhHhh
Confidence            6789999999999999987     57899999999999999987765544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=82.51  E-value=4.3  Score=39.85  Aligned_cols=67  Identities=7%  Similarity=-0.139  Sum_probs=53.6

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS-HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH  206 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~  206 (408)
                      ..++.++..++.+++ ..+++++|+.++++|...+ +..++..+|.+|.. .|      +.++|+++|.+|....-
T Consensus       274 ~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~-~G------~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          274 NNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM-KG------MNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHhcCC
Confidence            457777777888776 5799999999999999886 44455677888854 45      88999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=82.31  E-value=5.1  Score=40.37  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHH-------HHHHH----------------
Q 015393          119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQA-------LYSLA----------------  175 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A-------~~~Lg----------------  175 (408)
                      .++|..+|.++      ..+..|+..+. -.+++++|++.|++|   +++..       +..++                
T Consensus       138 yeeA~~~Y~~a------~n~~~LA~~L~-~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~a  207 (449)
T 1b89_A          138 YDAAKLLYNNV------SNFGRLASTLV-HLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA  207 (449)
T ss_dssp             TTTHHHHHHHT------TCHHHHHHHHH-TTTCHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCH
T ss_pred             HHHHHHHHHHh------hhHHHHHHHHH-HhccHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCH
Confidence            36788888755      46677888877 578899999999998   56743       33332                


Q ss_pred             -------HHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHH
Q 015393          176 -------VIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLV  235 (408)
Q Consensus       176 -------~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~  235 (408)
                             .+|.. .|      ..++|+.+|+++...  -|......||.+|..-  -+..+.+.++.|.
T Consensus       208 d~l~~lv~~Yek-~G------~~eEai~lLe~aL~le~ah~~~ftel~il~~ky--~p~k~~ehl~~~~  267 (449)
T 1b89_A          208 DELEELINYYQD-RG------YFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHH-CC------CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence                   33422 23      677888888888765  5788889999999652  3455555555554

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.21  E-value=1.1  Score=31.70  Aligned_cols=41  Identities=34%  Similarity=0.804  Sum_probs=29.2

Q ss_pred             CCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhchhhh
Q 015393          325 PGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADCAPAE  378 (408)
Q Consensus       325 ~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C~~~~  378 (408)
                      .....|.  -|+....     -+|.+|. ++|||..|.    + .||..|....
T Consensus        10 ~~~~~C~--vC~~~~k-----Y~CPrC~-~~yCSl~C~----k-~Hk~~C~~~~   50 (56)
T 2yqq_A           10 CSTVVCV--ICLEKPK-----YRCPACR-VPYCSVVCF----R-KHKEQCNPET   50 (56)
T ss_dssp             CCCCCCT--TTCSCCS-----EECTTTC-CEESSHHHH----H-HHHHHCCCCC
T ss_pred             CCCCccC--cCcCCCe-----eeCCCCC-CCeeCHHHH----H-HHHhhCcCCc
Confidence            3445688  5766333     6899998 899999995    5 4777787644

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=81.63  E-value=47  Score=33.44  Aligned_cols=167  Identities=10%  Similarity=-0.050  Sum_probs=100.1

Q ss_pred             CCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhcch-hHHHhh-------hcCCHHHHHHHHHHHHH
Q 015393           60 ALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKASK-KTFAIK-------ANNWSESAHRFLKLCAD  131 (408)
Q Consensus        60 ~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a~~-~~~~~~-------~~~~~~~A~~~l~~aAe  131 (408)
                      ..|+-++..++...+..    .|+..+.-....+.+.+..+.+...... ..+...       .....++|..+|..-.+
T Consensus        23 ~spe~~l~~~id~c~k~----G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~   98 (501)
T 4g26_A           23 QSPEALLKQKLDMCSKK----GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV   98 (501)
T ss_dssp             -CHHHHHHHHHHHTTTS----CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence            34565665555555443    2566666666667666655533221111 111100       00114678899988888


Q ss_pred             cC---CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC
Q 015393          132 AG---NVEACYTLGMIRFYCLQNRGSGASLMAKAAISSH---AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG  205 (408)
Q Consensus       132 ~G---~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G  205 (408)
                      .|   |...+..|-..|. ..++.++|+++|+.--+.|.   ...+..|=..|.. .|      ++++|.++|..-.+.|
T Consensus        99 ~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g------~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A           99 DKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KG------DADKAYEVDAHMVESE  170 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHTT
T ss_pred             hCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CC------CHHHHHHHHHHHHhcC
Confidence            87   5556555555554 56899999999999888873   3333333333322 34      8889999999988887


Q ss_pred             C---HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCC
Q 015393          206 H---IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAREL  242 (408)
Q Consensus       206 ~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~  242 (408)
                      .   ...+..|=..|    .-..+.++|.++|++--+.|.
T Consensus       171 ~~Pd~~ty~~Li~~~----~~~g~~d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          171 VVPEEPELAALLKVS----MDTKNADKVYKTLQRLRDLVR  206 (501)
T ss_dssp             CCCCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHH----hhCCCHHHHHHHHHHHHHhCC
Confidence            4   33444443333    335678888888888776654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=80.58  E-value=15  Score=30.23  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCCcccc
Q 015393          153 GSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHI----DALRELGHCLQDGYGVRQN  226 (408)
Q Consensus       153 ~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~~d  226 (408)
                      ....+-|.++...|  ..+++|++|..+.. ..   ...|..+++.+++.-...+++    +..|.||.-+..-.    |
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~---~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg----~   89 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TR---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK----E   89 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT----C
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh----h
Confidence            34445555555533  46677777776654 22   234666677777776666543    46666666665432    5


Q ss_pred             HHHHHHHHHHHHHc
Q 015393          227 IAEGRRFLVQANAR  240 (408)
Q Consensus       227 ~~~A~~w~~kAA~~  240 (408)
                      +.+|+++.....+.
T Consensus        90 Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           90 YEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666655543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=80.38  E-value=38  Score=32.39  Aligned_cols=121  Identities=7%  Similarity=-0.059  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhhcc-CCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFYCL-QNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~-~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      .++++.++..+...  .+..+.+.-+.++.... .++++++.++.++.+..  +..|.+.-+.++..- |.     ..++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-~~-----~~~e  163 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AV-----APAE  163 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC-----CHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-Cc-----CHHH
Confidence            35788888877764  59999999998887432 36899999999998874  788999888888653 31     3579


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCC----------ccccHHHHHHHHHHHHHc--CCHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDGYG----------VRQNIAEGRRFLVQANAR--ELAAV  245 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~G----------v~~d~~~A~~w~~kAA~~--G~~~A  245 (408)
                      +++++.++.+.  .+..|.+..+.++..-..          ...-+.+++.++.+|...  ++..|
T Consensus       164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999886  789999999998864211          114478899999999864  44444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	2e-07
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	2e-07
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	6e-07
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	4e-04

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
           V CGR          C+ C  VNYCS  CQ  DWK  H+  C
Sbjct: 3   VNCGREAMSE-----CTGCHKVNYCSTFCQRKDWK-DHQHIC 38

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 335 CGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
           CGR  +       CS C    YC   CQ  DW+ +H   C
Sbjct: 14  CGRKASET-----CSGCNTARYCGSFCQHKDWE-KHHHIC 47

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 6e-07
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 333 VGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC 374
             C    ++R     CS C    YC R CQ   W+ +H   C
Sbjct: 12  AYCSAEASKR-----CSRCQNEWYCCRECQVKHWE-KHGKTC 47

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 29/244 (11%), Positives = 54/244 (22%), Gaps = 23/244 (9%)

Query: 168 AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNI 227
            + L  L    +        +KD         +A  L        LG     G GV +N+
Sbjct: 2   PKELVGLGAKSYK-------EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNL 54

Query: 228 AEGRRFLVQANARELAAVLSSAACQGISTRSWLTWNPLSQPHPAPHPRNQN--------- 278
            +   F  +A     +           S +        +  + +     +          
Sbjct: 55  KKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGG 114

Query: 279 PNHNGHVTGIGCPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRP 338
             H+G V         ++               L   + A  GTP    +  +       
Sbjct: 115 IYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD 174

Query: 339 ETRRHEFR---RCSVCGAVNYCSRACQALDWKLRHKADCAPAERWLD---EEGNGDVDVD 392
                           G     +       +    + +       L      G G V  +
Sbjct: 175 LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG-VTRN 233

Query: 393 LNDA 396
              A
Sbjct: 234 EKQA 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.75
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.14
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.08
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.29
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.23
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.09
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.09
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.02
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.99
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.97
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.79
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.74
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.67
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.57
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.41
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.28
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.18
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.98
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.11
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.08
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.12
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.76
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.3
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	93.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.13
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.03
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	90.65
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.83
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.66
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	89.03
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	84.09

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.93  E-value=1.5e-25  Score=190.07  Aligned_cols=125  Identities=18%  Similarity=0.098  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHH
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVAL  197 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~  197 (408)
                      +.++|+.||+++++.|++.|++.||..   .+.|.++|++||++|++.|++.|++.||.+|.+|.++++   |..+|++|
T Consensus         8 d~~~A~~~~~kaa~~g~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~---d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFGCLSLVSN---SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK---DLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHTC---TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC---CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhhhhhhccc---cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccch---hhHHHHHH
Confidence            467999999999999999999999864   468999999999999999999999999999999999887   99999999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhh
Q 015393          198 CARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSS  248 (408)
Q Consensus       198 ~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~  248 (408)
                      |++|++.|++.|++.||.+|.+|.||++|.++|++||++|+++|+..|+..
T Consensus        82 ~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~  132 (133)
T d1klxa_          82 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHh
Confidence            999999999999999999999999999999999999999999999999753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.83  E-value=7.2e-20  Score=169.89  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=123.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ......+..++.+..+.++..+++.||.+|..   ...+...++.|+++|++.|++.|+++||.+|..|.|+++   |+.
T Consensus       123 ~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~---d~~  199 (265)
T d1ouva_         123 TRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK---NFK  199 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC---CHH
T ss_pred             cchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc---chh
Confidence            34477899999999999999999999999984   568999999999999999999999999999999999888   999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          193 AGVALCARAAFLGHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      +|+.||++|+++|++.|+++||.+|..|.||++|.++|++||++|+++|+..|....
T Consensus       200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l  256 (265)
T d1ouva_         200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL  256 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998775

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.78  E-value=2.3e-18  Score=145.06  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          116 NNWSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ....++|+.||+++++.|++.|++.||.+|+.   +++|..+|++||++|++.|++.|+++||.+|.+|.||++   |+.
T Consensus        36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~---d~~  112 (133)
T d1klxa_          36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK---NEK  112 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---CHH
T ss_pred             ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCC---CHH
Confidence            34578999999999999999999999999983   579999999999999999999999999999999999888   999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHH
Q 015393          193 AGVALCARAAFLGHIDALREL  213 (408)
Q Consensus       193 kA~~~~~kAA~~G~~~A~~~L  213 (408)
                      +|++||++|+++|+++|++.|
T Consensus       113 ~A~~~~~~Aa~~G~~~A~~~l  133 (133)
T d1klxa_         113 QAVKTFEKACRLGSEDACGIL  133 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHhC
Confidence            999999999999999999865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.75  E-value=2.9e-17  Score=152.04  Aligned_cols=132  Identities=21%  Similarity=0.249  Sum_probs=99.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhHHHHhh---ccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCcc-----
Q 015393          118 WSESAHRFLKLCADAGNVEACYTLGMIRFY---CLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDK-----  189 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~---~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~-----  189 (408)
                      +.++|+.||++|++.|+++|+++||.+|+.   +++|+.+++.||++++..+++.|+++||.++..|..++....     
T Consensus        17 d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~   96 (265)
T d1ouva_          17 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQY   96 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHH
Confidence            456666666666666777777777766663   356666666666666666666666666666655544433221     


Q ss_pred             ----------------------------------------------------------------CHHHHHHHHHHHHhCC
Q 015393          190 ----------------------------------------------------------------DLRAGVALCARAAFLG  205 (408)
Q Consensus       190 ----------------------------------------------------------------d~~kA~~~~~kAA~~G  205 (408)
                                                                                      +...+..|++++++.|
T Consensus        97 ~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g  176 (265)
T d1ouva_          97 YSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK  176 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhcccccc
Confidence                                                                            6678888899999999


Q ss_pred             CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcCCHHHHhhh
Q 015393          206 HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSSA  249 (408)
Q Consensus       206 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G~~~A~~~~  249 (408)
                      ++.|+++||.+|..|.|+++|+++|+.||++|+++|++.|+..+
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~L  220 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL  220 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHH
Confidence            99999999999999999999999999999999999999998764

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-11  Score=84.39  Aligned_cols=43  Identities=35%  Similarity=0.910  Sum_probs=36.1

Q ss_pred             CCCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhc
Q 015393          324 GPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC  374 (408)
Q Consensus       324 ~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C  374 (408)
                      .+....|.  .|++...     ++|++|+.++|||++||+.||+ .||..|
T Consensus         5 ~p~~~~C~--~Cg~~~~-----~~Cs~C~~~~YCs~~CQ~~dW~-~Hk~~C   47 (47)
T d2dana1           5 APERPRCA--YCSAEAS-----KRCSRCQNEWYCCRECQVKHWE-KHGKTC   47 (47)
T ss_dssp             CCCCCCCS--SSCCCCC-----EECTTTSCSEESSHHHHHHTHH-HHTTTC
T ss_pred             CCCCCcCc--CCCChhh-----ccCCCCCCEeeCCHHHHHHHHH-HHhhhC
Confidence            34456799  5776644     8999999999999999999999 599987

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.6e-11  Score=79.09  Aligned_cols=37  Identities=49%  Similarity=1.154  Sum_probs=31.5

Q ss_pred             CcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhc
Q 015393          330 CSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC  374 (408)
Q Consensus       330 C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C  374 (408)
                      |.  .|++.     .+++|++|+.++|||++||+.||+ .||..|
T Consensus         2 C~--~C~~~-----~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C   38 (38)
T d2jw6a1           2 CV--NCGRE-----AMSECTGCHKVNYCSTFCQRKDWK-DHQHIC   38 (38)
T ss_dssp             CS--SSSSS-----CSEECTTTCSSEESSHHHHHHHTT-TGGGTT
T ss_pred             cc--ccCcc-----ccccCCCCCCEeeCCHHHHHHHHH-HHhhhC
Confidence            56  45554     358999999999999999999999 599987

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.6e-11  Score=82.19  Aligned_cols=43  Identities=35%  Similarity=0.863  Sum_probs=36.0

Q ss_pred             CCCCCcCcCCCCCCCccccccccCCccCCccccCChhHHHhhchhhhhhhc
Q 015393          324 GPGLRLCSHVGCGRPETRRHEFRRCSVCGAVNYCSRACQALDWKLRHKADC  374 (408)
Q Consensus       324 ~~~~~~C~~~~C~~~~~~~~~~~~C~~C~~~~YCs~~cQ~~dW~~~Hk~~C  374 (408)
                      ......|.  .|++..     +++|++|+.++|||++||+.||+ .||..|
T Consensus         5 ~~~~~~C~--~C~~~~-----~~~C~~C~~~~YCs~~CQ~~dW~-~Hk~~C   47 (47)
T d2dj8a1           5 EDSSESCW--NCGRKA-----SETCSGCNTARYCGSFCQHKDWE-KHHHIC   47 (47)
T ss_dssp             CCCSCCCS--SSCSCC-----CEECTTTSCCEESSHHHHHHTHH-HHTTTS
T ss_pred             ccCCCcCC--CCCccc-----cccCCCCCCeeeCCHHHHHHHHH-HHhhhC
Confidence            34567888  577654     47899999999999999999999 599987

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=8.9e-07  Score=76.07  Aligned_cols=95  Identities=19%  Similarity=0.128  Sum_probs=80.6

Q ss_pred             CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 015393          133 GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHID  208 (408)
Q Consensus       133 G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~  208 (408)
                      ++++.....|..|+ ..+++++|+.+|++|.+.  .++.+++++|.+|.. .|      ++++|+.+|++|.+.  .++.
T Consensus         2 ~~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~------~~~~Ai~~~~~al~l~p~~~~   73 (201)
T d2c2la1           2 PSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSVK   73 (201)
T ss_dssp             CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSCTTCHH
T ss_pred             hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hh------hhhhhhHHHHHHHHhCCCcHH
Confidence            45677888898888 688999999999998877  588999999999964 44      888999999999875  6788


Q ss_pred             HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          209 ALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       209 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +.++||.+|..    -.++++|+.+|++|.+
T Consensus        74 a~~~lg~~~~~----l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          74 AHFFLGQCQLE----MESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            99999999976    6789999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.5e-06  Score=74.46  Aligned_cols=113  Identities=11%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             hcCCHHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          115 ANNWSESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .....++|+..|.+. ..-++.++|+||.+|+ ..+++++|+++|++|.+.  .++.|.+++|.+|.. .|      +++
T Consensus        17 ~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g------~~~   87 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV-QDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TE------KYD   87 (192)
T ss_dssp             HTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hc------cHH
Confidence            344567889988864 5568999999999998 789999999999999877  599999999999965 45      899


Q ss_pred             HHHHHHHHHHhC--C----------------CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--G----------------HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~--G----------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|+..|++|...  +                ..+..+++|.+|..    ..+.++|...|.+|...
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            999999999753  1                14778999999976    78999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.2e-06  Score=75.79  Aligned_cols=109  Identities=15%  Similarity=0.050  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHc----CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          119 SESAHRFLKLCADA----GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe~----G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ..++...|.++.+.    -++.+.+.+|.++. ..+++++|+.+|+++...  .++.+++.||.+|.. .|      +++
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~  223 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN------QSE  223 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhcccc-cc------cch
Confidence            45678888888764    36788999999998 689999999999999876  589999999999975 44      899


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      +|+++|++|.+.  +++.+.+.||.+|..    .+++++|+.+|++|.+
T Consensus       224 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         224 EAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            999999999874  799999999999987    6799999999999987

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=5.2e-06  Score=73.78  Aligned_cols=96  Identities=14%  Similarity=0.041  Sum_probs=66.5

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      .+.+.|++|.+|. ..+++++|+.+|++|...  .++.+.++||.+|.. .|      ++++|+..|++|.+.  .++.+
T Consensus        36 ~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~a  107 (259)
T d1xnfa_          36 RAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG------NFDAAYEAFDSVLELDPTYNYA  107 (259)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HH------HHHHhhhhhhHHHHHHhhhhhh
Confidence            3456677777777 567777777777777665  477777777777753 33      677777777777764  46777


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+.||.+|..    ..+..+|+.+|++|.+..
T Consensus       108 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         108 HLNRGIALYY----GGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHhhc
Confidence            7777777754    456777777777776643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.23  E-value=4.7e-06  Score=66.10  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=75.1

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      ..|.+|..++ ..+++.+|+.+|+++....  ++.+++.||.+|.. .|      ++.+|+.+|++|.+.  .++.+.+.
T Consensus        18 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~a~~~   89 (112)
T d1hxia_          18 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NE------KDGLAIIALNHARMLDPKDIAVHAA   89 (112)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hh------hHHHhhcccccccccccccccchHH
Confidence            3477888887 6889999999999988775  79999999999954 44      788999999999875  68899999


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHH
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      ||.+|..    ..|.++|++.|++.
T Consensus        90 la~~y~~----~g~~~~A~~~l~~~  110 (112)
T d1hxia_          90 LAVSHTN----EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHHHHHHHH
Confidence            9999976    67999999999876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-05  Score=73.39  Aligned_cols=121  Identities=18%  Similarity=0.124  Sum_probs=97.8

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|+++.+.  .++++.+.||.+|. ..+++.+|+++|+++...  .++...+.+|.+|.. .|      ++
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~  321 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QG------NI  321 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CC------CH
Confidence            34467889999888765  68889999999888 678899999999988776  477888899988864 34      88


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHhh
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLSS  248 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~~  248 (408)
                      ++|+.+|+++.+.  .++.+++.||.+|..    ..+.++|+.+|++|.+.  .++.+...
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999875  578999999999976    67899999999999875  34555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.4e-06  Score=65.06  Aligned_cols=76  Identities=20%  Similarity=0.194  Sum_probs=65.8

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS---------HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL  204 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---------~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~  204 (408)
                      .++.+|.||.+++ ..+|+.+|+.||++|.+..         .++++++||.+|.. .|      ++++|+.+|++|.+.
T Consensus         4 saddc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g------~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           4 TAEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QG------DLDKALLLTKKLLEL   75 (95)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cC------ChHHHHHHHHHHHHh
Confidence            4678999999998 7899999999999998652         26789999999965 45      899999999999987


Q ss_pred             --CCHHHHHHHHHHH
Q 015393          205 --GHIDALRELGHCL  217 (408)
Q Consensus       205 --G~~~A~~~Lg~~y  217 (408)
                        .++.|.++|+.+.
T Consensus        76 ~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          76 DPEHQRANGNLKYFE   90 (95)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHH
Confidence              7899999998765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-05  Score=66.66  Aligned_cols=93  Identities=15%  Similarity=0.089  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|+.+|+++.+.  .++.++++||.+|+ ..+++++|+..|++|.+.  .++.|++++|.+|.. .|      ++.
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g------~~~   95 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFR   95 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cC------CHH
Confidence            3457788888887664  58888888898888 568888899999888765  578888888888864 45      788


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      +|+.+|+++...  .++.++..++.+.
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            899999888875  5777877777665

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.4e-05  Score=69.25  Aligned_cols=78  Identities=9%  Similarity=-0.091  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+..|+++.+.  .++.+.++||.+|. ..+++++|+..|++|.+.  .++.+.++||.+|.. .|      ++.+
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g------~~~~  123 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG------RDKL  123 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-Hh------hHHH
Confidence            456777777777654  57788888888777 577788888888887765  367778888877754 33      5666


Q ss_pred             HHHHHHHHHh
Q 015393          194 GVALCARAAF  203 (408)
Q Consensus       194 A~~~~~kAA~  203 (408)
                      |+.+|+++.+
T Consensus       124 A~~~~~~al~  133 (259)
T d1xnfa_         124 AQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666666644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.2e-05  Score=65.17  Aligned_cols=93  Identities=6%  Similarity=-0.047  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCccC
Q 015393          119 SESAHRFLKLCAD--AGNVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS----HAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       119 ~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .++|...|+++..  ..+++++|++|.++..  ...|..+|+..|+++....    +++++|+||.+|.. .|      +
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g------~   87 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------E   87 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TT------C
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-Hh------h
Confidence            4678889998877  4689999999999873  3457788999999998764    24589999999975 45      8


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          191 LRAGVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       191 ~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      +++|+++|+++.+.  ++..|...++.+..
T Consensus        88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            99999999999886  68889988887764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-05  Score=69.05  Aligned_cols=90  Identities=8%  Similarity=0.029  Sum_probs=78.8

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELG  214 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg  214 (408)
                      ..|+.|..++ ..+|+++|++.|.+. ..-++.++|+||.+|.. .|      ++++|+.+|.+|.+.  .++.+.+++|
T Consensus         7 ~l~~~g~~~~-~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~-~g------~~~~A~~~~~kAl~ldp~~~~a~~~~g   77 (192)
T d1hh8a_           7 SLWNEGVLAA-DKKDWKGALDAFSAV-QDPHSRICFNIGCMYTI-LK------NMTEAEKAFTRSINRDKHLAVAYFQRG   77 (192)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cC------CchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            4567788887 789999999999985 44589999999999974 55      899999999999875  6899999999


Q ss_pred             HHHHcCCCccccHHHHHHHHHHHHH
Q 015393          215 HCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       215 ~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .+|..    -.++++|+..|++|..
T Consensus        78 ~~~~~----~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          78 MLYYQ----TEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHh----hccHHHHHHHHHHHHH
Confidence            99976    7799999999999975

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.1e-05  Score=60.23  Aligned_cols=92  Identities=5%  Similarity=-0.189  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCAD--AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe--~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.+|.++.+  ..++.+.+++|.+|+ ..+++++|+..|.+|.+.  +++.+++++|.+|.. .|      ++++
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~------~~~~   89 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LN------RFEE   89 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-cc------CHHH
Confidence            46789999998865  568999999999998 689999999999999876  589999999999965 34      8899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          194 GVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      |+..|++|.+.  .++.++..|+.+-
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999976  6788888887764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.4e-05  Score=61.29  Aligned_cols=92  Identities=11%  Similarity=0.019  Sum_probs=80.0

Q ss_pred             HHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 015393          138 CYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALREL  213 (408)
Q Consensus       138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~L  213 (408)
                      ....|..++ ..+++++|+.+|.+|.+.  .++.+.+++|.+|.. .|      ++.+|+..|.++.+.  +++.+++++
T Consensus         6 l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           6 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KG------DYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cc------cccccchhhhhHHHhccchhhHHHHH
Confidence            345677777 689999999999999776  589999999999976 34      899999999999975  789999999


Q ss_pred             HHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          214 GHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       214 g~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |.+|..    ..++++|+..|++|.+..
T Consensus        78 g~~~~~----~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          78 AAALEF----LNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            999976    789999999999999753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=65.43  Aligned_cols=92  Identities=10%  Similarity=0.020  Sum_probs=74.3

Q ss_pred             hHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCCC----HHHHHHHH
Q 015393          141 LGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH----IDALRELG  214 (408)
Q Consensus       141 LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G~----~~A~~~Lg  214 (408)
                      |...+. ...++++|.+.|++|...  .+++++|++|.++.. .+   ...|..+|+..|+++.....    ++++++||
T Consensus         5 l~n~~~-~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~---~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           5 VLNELV-SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TR---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hc---chHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            334444 467899999999999986  589999999999963 11   23388899999999998653    34899999


Q ss_pred             HHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          215 HCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       215 ~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+|..    .+|+++|+.+|++|.+..
T Consensus        80 ~~y~~----~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          80 VGNYR----LKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH----HhhhHHHHHHHHHHHHhC
Confidence            99986    689999999999998853

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.7e-05  Score=74.19  Aligned_cols=116  Identities=5%  Similarity=-0.040  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+.++.++.+.  .+..+.+++|.++. ..+++++|+++|.+|.+..  +..+++++|.+|..- |      ++++
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~-~------~~~~  164 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-K------LWDN  164 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T------CCTT
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH-H------hhHH
Confidence            456777777766553  47777777777776 4566677777777777653  677777777777532 2      4456


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcC--CCccccHHHHHHHHHHHHHcC
Q 015393          194 GVALCARAAFL--GHIDALRELGHCLQDG--YGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       194 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G--~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      |+++|.+|.+.  .+..|++++|.++...  ..-..+.++|+.+|.+|....
T Consensus       165 Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC
Confidence            77777777765  4677777777776543  223445667777777777663

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.8e-05  Score=62.89  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=75.3

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC-----
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH-----  206 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~-----  206 (408)
                      .+.-++|..|+ -.+++.+|+.+|++|.+..  ++.+.+++|.+|.. .|      ++.+|+.+|++|.+.  .+     
T Consensus         5 ~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~------~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           5 LKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KG------DYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cC------chHHHHHHHHHHHHhCcccHHHHH
Confidence            35567898888 6899999999999998875  78899999999964 34      899999999999873  22     


Q ss_pred             --HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          207 --IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       207 --~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                        ..+++.||.++..    .+++.+|+.+|.++...
T Consensus        77 ~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          77 QIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence              2466777777765    78999999999999764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00011  Score=60.96  Aligned_cols=93  Identities=12%  Similarity=-0.041  Sum_probs=80.0

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      .....|..|+ ..+++++|+.+|++|.+.  .++.++++||.+|..- |      ++.+|+..|++|.+.  .++.|.+.
T Consensus        12 ~l~~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~------~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_          12 ELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-E------CYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-c------ccchHHHHHHHHHHHcccchHHHHH
Confidence            3445677887 789999999999999877  5899999999999864 5      899999999999875  78999999


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|.+|.. .|   |+.+|+.+|++|....
T Consensus        84 ~g~~~~~-~g---~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          84 RAASNMA-LG---KFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHH-TT---CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHH-cC---CHHHHHHHHHHHHHcC
Confidence            9999974 45   7899999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=5.4e-05  Score=64.37  Aligned_cols=80  Identities=11%  Similarity=-0.048  Sum_probs=70.9

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+.+|++|.+.  .++.+++++|.+|+ ..+++++|+.+|++|.+.  .++.|+++||.+|.. .|      ++
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~------~~   88 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SY   88 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CC------CH
Confidence            34568999999999865  79999999999998 789999999999999875  589999999999965 45      89


Q ss_pred             HHHHHHHHHHHh
Q 015393          192 RAGVALCARAAF  203 (408)
Q Consensus       192 ~kA~~~~~kAA~  203 (408)
                      ++|+.+|++|.+
T Consensus        89 ~~A~~~~~~al~  100 (201)
T d2c2la1          89 DEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999976

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00026  Score=64.61  Aligned_cols=113  Identities=18%  Similarity=0.108  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          117 NWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ...++|..+++++.+.  .++++.+.+|.+|. ..+++++|+..|+++...  .++...+.||.+|.. .|      +++
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~  254 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK-EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QG------LID  254 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhh-ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH-CC------CHH
Confidence            3456777777766554  57777777777777 566777777777776654  366677777777764 23      677


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      +|+.+|++|.+.  .++.+.+.||.+|..    ..+..+|+.+|+++....
T Consensus       255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  301 (388)
T d1w3ba_         255 LAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccC
Confidence            777777777665  567777777777755    567777777777776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.74  E-value=5.5e-05  Score=62.62  Aligned_cols=112  Identities=8%  Similarity=0.015  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHH--HcCCHHHHHHhHHHHhh---------ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCC
Q 015393          119 SESAHRFLKLCA--DAGNVEACYTLGMIRFY---------CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGS  185 (408)
Q Consensus       119 ~~~A~~~l~~aA--e~G~~~A~~~LG~~y~~---------~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~  185 (408)
                      .++|+..|+++.  +..|+++.+++|.+|..         ..+.+++|+..|++|.+.  .++.|+++||.+|..-.-..
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            578999999885  46799999999999872         225567899999999877  58999999999996421000


Q ss_pred             CC----ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          186 KN----DKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       186 ~~----~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      ..    ..++.+|.++|++|.+.  .+..+...|+...           +|...|.++-.+|
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-----------ka~~~~~e~~k~~  143 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-----------KAPQLHAEAYKQG  143 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------THHHHHHHHHHSS
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHh
Confidence            00    12578899999999875  5888888888876           4556666655554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.67  E-value=0.00011  Score=57.66  Aligned_cols=80  Identities=16%  Similarity=0.056  Sum_probs=68.7

Q ss_pred             hcCCHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccC
Q 015393          115 ANNWSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKD  190 (408)
Q Consensus       115 ~~~~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d  190 (408)
                      .....++|+.+|+++.+..  ++.+++.||.+|. ..+++.+|+.+|++|.+.  .++++++.||.+|.. .|      +
T Consensus        28 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g------~   99 (112)
T d1hxia_          28 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EH------N   99 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HH------H
T ss_pred             HHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CC------C
Confidence            3445688999999887764  8999999999998 789999999999999877  489999999999964 34      8


Q ss_pred             HHHHHHHHHHHH
Q 015393          191 LRAGVALCARAA  202 (408)
Q Consensus       191 ~~kA~~~~~kAA  202 (408)
                      ..+|++.|++..
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999863

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=0.00032  Score=63.96  Aligned_cols=113  Identities=12%  Similarity=-0.035  Sum_probs=90.5

Q ss_pred             cCCHHHHHHHHHHHHHc----CCH----HHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHH
Q 015393          116 NNWSESAHRFLKLCADA----GNV----EACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQF  179 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~----G~~----~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~  179 (408)
                      ++| ++|+..|.+|++.    ++.    .++.++|.+|. ..+++++|+++|++|.+.    |.    ..++.+||.+|.
T Consensus        51 ~~~-~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          51 KEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             TCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            344 6788888888874    443    57889999998 678999999999999864    33    567889999997


Q ss_pred             cCCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          180 NGSGGSKNDKDLRAGVALCARAAFL----GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       180 ~G~Gv~~~~~d~~kA~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .-.|      ++++|+++|++|.+.    ++    ..++.++|.+|..    ..++.+|+.+|+++...
T Consensus       129 ~~~~------~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         129 NDLH------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HTTC------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             hHHH------HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHh
Confidence            6556      899999999999863    43    3457889999966    67999999999999874

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.5e-05  Score=77.73  Aligned_cols=105  Identities=11%  Similarity=0.011  Sum_probs=64.7

Q ss_pred             cCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          132 AGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       132 ~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      ..+..+.+++|..|. ..++..+|+.+|+++.......++++||.++..- |      ++++|+.||++|.+.  .++.+
T Consensus       117 ~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~-~------~~~~A~~~y~~A~~l~P~~~~~  188 (497)
T d1ya0a1         117 LPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYR-N------QTSQAESYYRHAAQLVPSNGQP  188 (497)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHHCTTBSHH
T ss_pred             hhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHc-c------cHHHHHHHHHHHHHHCCCchHH
Confidence            467778889998887 6788889999999998887788999999998763 3      788999999999886  67889


Q ss_pred             HHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHhh
Q 015393          210 LRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLSS  248 (408)
Q Consensus       210 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~~  248 (408)
                      +++||.+|..    ..|..+|+.+|.+|...  .++.|..+
T Consensus       189 ~~~Lg~~~~~----~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         189 YNQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            9999999965    67889999999999874  44555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.59  E-value=0.00099  Score=55.62  Aligned_cols=77  Identities=16%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDA  209 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A  209 (408)
                      +..++++||.+|. ..+++++|+.+|.+|.+.  .++.|++++|.+|.. .|      ++++|+..|++|.+.  ++..+
T Consensus        76 ~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~------~~~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          76 ALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LK------EYDQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-cc------CHHHHHHHHHHHHHhCCCCHHH
Confidence            5557788999988 679999999999999875  699999999999975 34      899999999999987  68888


Q ss_pred             HHHHHHHHH
Q 015393          210 LRELGHCLQ  218 (408)
Q Consensus       210 ~~~Lg~~y~  218 (408)
                      ...|+.++.
T Consensus       148 ~~~l~~~~~  156 (169)
T d1ihga1         148 QAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00013  Score=67.88  Aligned_cols=120  Identities=10%  Similarity=-0.012  Sum_probs=99.3

Q ss_pred             cCCHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCH
Q 015393          116 NNWSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       116 ~~~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ....++|+..+.+|.+.  .+..|+++.|.++....+|+++|+.+|+++.+.  .+..+++++|.+|.. .|      ++
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~------~~  128 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LR------DP  128 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CC
T ss_pred             CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hc------cH
Confidence            34468899999988875  589999999999886667899999999999776  589999999999965 34      66


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHcC--CHHHH
Q 015393          192 RAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANARE--LAAVL  246 (408)
Q Consensus       192 ~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~G--~~~A~  246 (408)
                      .+|+++|.+|.+.  .+..+.+++|.+|..    -.+.++|+.+|.+|.+..  +..|.
T Consensus       129 ~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         129 SQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHH
Confidence            7899999999986  589999999999976    567889999999999864  44443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0004  Score=58.57  Aligned_cols=93  Identities=17%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHHcCC-----------------HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Q 015393          118 WSESAHRFLKLCADAGN-----------------VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQ  178 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~-----------------~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y  178 (408)
                      ..++|+.+|++|.+.-.                 ..++.+||.+|+ -.+++.+|+.++++|....  ++.+++.+|.+|
T Consensus        28 ~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  106 (170)
T d1p5qa1          28 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEAH  106 (170)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHHH
Confidence            35667777777765421                 234556777766 4677777777777777764  677777777777


Q ss_pred             HcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 015393          179 FNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQ  218 (408)
Q Consensus       179 ~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~  218 (408)
                      .. .|      ++.+|+.+|++|.+.  +++.+...|+.++.
T Consensus       107 ~~-~g------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1         107 LA-VN------DFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HH-hh------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            64 33      677777777777765  47777777777764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.44  E-value=0.0007  Score=56.59  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=71.7

Q ss_pred             HhHHHHhhccCCHHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHH
Q 015393          140 TLGMIRFYCLQNRGSGASLMAKAAIS------------------SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARA  201 (408)
Q Consensus       140 ~LG~~y~~~~~d~~~A~~~~~kAA~~------------------G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kA  201 (408)
                      ..|..++ ..+++.+|+.+|.+|...                  -...++.+||.+|.. .|      ++.+|+..|.+|
T Consensus        32 ~~~~~~~-~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~------~~~~Ai~~~~~a  103 (169)
T d1ihga1          32 NIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MS------DWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-hc------ccchhhhhhhhh
Confidence            3444444 345666666666665421                  245577889999975 34      899999999999


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHHHHh
Q 015393          202 AFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAAVLS  247 (408)
Q Consensus       202 A~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~A~~  247 (408)
                      .+.  +++.+++.+|.+|..    -.++++|+..|++|.+.  ++..+..
T Consensus       104 l~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            885  799999999999976    57999999999999986  4454433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.001  Score=55.86  Aligned_cols=58  Identities=16%  Similarity=0.053  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Q 015393          120 ESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQ  178 (408)
Q Consensus       120 ~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y  178 (408)
                      ++|+.+++++.+.  .++.+++.+|.+|+ ..+++++|+.+|++|.+.  +++.+...|+.++
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4444444444332  24444444444444 344444444444444443  2444444444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00063  Score=61.72  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=73.5

Q ss_pred             HHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 015393          137 ACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRE  212 (408)
Q Consensus       137 A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~  212 (408)
                      ..|..|..|+ ..+++++|+.+|+++.+.  .++.+++.||.+|.. .|      ++.+|+.+|.+|.+.  .++.+.+.
T Consensus        21 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          21 QPFEEGLRRL-QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NE------QELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             SHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------ChHHHHHHHHhhhcccccccccccc
Confidence            3567788877 678889999999998877  478889999988865 34      788899999988875  57888888


Q ss_pred             HHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          213 LGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       213 Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|.+|..    ..+..+|+..|+++...
T Consensus        93 la~~~~~----~~~~~~A~~~~~~~~~~  116 (323)
T d1fcha_          93 LAVSFTN----ESLQRQACEILRDWLRY  116 (323)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             ccccccc----cccccccccchhhHHHh
Confidence            8888865    56788888888887654

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.6e-05  Score=49.11  Aligned_cols=39  Identities=36%  Similarity=0.667  Sum_probs=34.9

Q ss_pred             CCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCch
Q 015393           58 FDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSL  101 (408)
Q Consensus        58 f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~  101 (408)
                      |+.||+|++..||+.+     ++.|+.++..+||+|+++..++.
T Consensus         1 f~~LP~eil~~If~~L-----~~~dl~~~~~Vcr~w~~l~~~~~   39 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-----CLPELLKVSGVCKRWYRLASDES   39 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-----CGGGHHHHHTTCHHHHHHHTCGG
T ss_pred             CCcCCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCcc
Confidence            7899999999999988     46799999999999999987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.33  E-value=0.00054  Score=56.65  Aligned_cols=93  Identities=15%  Similarity=-0.000  Sum_probs=70.4

Q ss_pred             HHHHHh--HHHHhhccCCHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHH
Q 015393          136 EACYTL--GMIRFYCLQNRGSGASLMAKAAISS--------------HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCA  199 (408)
Q Consensus       136 ~A~~~L--G~~y~~~~~d~~~A~~~~~kAA~~G--------------~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~  199 (408)
                      .|...|  |..++ ..+++++|+..|++|.+..              .+.++.++|.+|.. .|      ++.+|+.+|.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg------~~~~A~~~~~   79 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LR------SFDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cC------ccchhhHhhh
Confidence            455555  44554 5689999999999998642              24678899999965 45      7888888888


Q ss_pred             HHHhC-------------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          200 RAAFL-------------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       200 kAA~~-------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      +|...             ....+.+++|.+|..    -.+.++|+.+|++|.+.
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHh
Confidence            88652             124478999999976    56899999999999863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.29  E-value=0.0011  Score=55.37  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=42.7

Q ss_pred             HHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 015393          138 CYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALREL  213 (408)
Q Consensus       138 ~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~L  213 (408)
                      ..++|.+|+ ..+++.+|+.+++++...  .++.+++++|.+|.. .|      ++.+|+.+|.++...  ++..+...|
T Consensus        67 ~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~-l~------~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          67 FLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL-MN------EFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344565555 456666666666666664  366666666666643 23      566666666666654  456666666


Q ss_pred             HHHH
Q 015393          214 GHCL  217 (408)
Q Consensus       214 g~~y  217 (408)
                      +.+.
T Consensus       139 ~~~~  142 (168)
T d1kt1a1         139 FMCQ  142 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.28  E-value=0.0017  Score=53.43  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          170 ALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       170 A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .+.++|.+|.. .|      ++.+|+++|.+|.+.  .++.|++.+|.+|..    -.++.+|+.+|++|.+.
T Consensus        69 ~~~Nla~~~~~-l~------~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNK-NK------DYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHH-hc------ccchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            45667777754 23      677777777777764  467777777777765    56777777777777765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00026  Score=70.14  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHH
Q 015393          119 SESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVA  196 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~  196 (408)
                      .++|...++++.......++++||.++. -.+++++|+.||++|.+.  .+..++++||++|.. .|      |..+|+.
T Consensus       136 ~~~A~~~~~~al~~~~~~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~------~~~~A~~  207 (497)
T d1ya0a1         136 TSAIVKPQSSSCSYICQHCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KG------DHLTTIF  207 (497)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cC------CHHHHHH
Confidence            5567777877777777789999999998 478999999999999987  588999999999964 34      8899999


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHHcCC------CccccHHHHHHHHHHHH
Q 015393          197 LCARAAFL--GHIDALRELGHCLQDGY------GVRQNIAEGRRFLVQAN  238 (408)
Q Consensus       197 ~~~kAA~~--G~~~A~~~Lg~~y~~G~------Gv~~d~~~A~~w~~kAA  238 (408)
                      +|.||...  .++.|..+|+..|..-.      -..........||.+..
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  257 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFH  257 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHH
Confidence            99999875  78999999999885321      22334455566665554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0006  Score=51.81  Aligned_cols=71  Identities=10%  Similarity=0.086  Sum_probs=57.6

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQA  237 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kA  237 (408)
                      +++.+|.||.++.. .|      |+.+|+.||++|.+.         ...+++++||.+|..    ..|+++|+.+|++|
T Consensus         4 saddc~~lG~~~~~-~g------~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYT-EA------DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHH
Confidence            46789999999975 34      999999999999863         126789999999977    78999999999999


Q ss_pred             HHc--CCHHHHhh
Q 015393          238 NAR--ELAAVLSS  248 (408)
Q Consensus       238 A~~--G~~~A~~~  248 (408)
                      .+.  .++.|..+
T Consensus        73 L~l~P~~~~a~~N   85 (95)
T d1tjca_          73 LELDPEHQRANGN   85 (95)
T ss_dssp             HHHCTTCHHHHHH
T ss_pred             HHhCcCCHHHHHH
Confidence            986  34555444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.0017  Score=58.94  Aligned_cols=97  Identities=16%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCCCCccCH
Q 015393          120 ESAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS----SH----AQALYSLAVIQFNGSGGSKNDKDL  191 (408)
Q Consensus       120 ~~A~~~l~~aAe~G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~~~~d~  191 (408)
                      ++|..+|.++            |.+|. ..+++++|++.|++|++.    ++    +.++.++|.+|.. .|      ++
T Consensus        34 ~~Aa~~y~~a------------a~~y~-~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~-~~------~~   93 (290)
T d1qqea_          34 EEAADLCVQA------------ATIYR-LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GG------NS   93 (290)
T ss_dssp             HHHHHHHHHH------------HHHHH-HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT------CH
T ss_pred             HHHHHHHHHH------------HHHHH-HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hC------Cc
Confidence            6677777765            55666 678999999999999975    22    4578999999965 34      88


Q ss_pred             HHHHHHHHHHHh----CCC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          192 RAGVALCARAAF----LGH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       192 ~kA~~~~~kAA~----~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      .+|+..|++|.+    .|+    ..+...||.+|+.   ...|+++|+.+|++|.+
T Consensus        94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~A~~  146 (290)
T d1qqea_          94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN---DLHDYAKAIDCYELAGE  146 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHH
Confidence            899999999987    344    4577888888854   13699999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0021  Score=51.14  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cH-------HHHHHHHHHHHcCCCCCC
Q 015393          118 WSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HA-------QALYSLAVIQFNGSGGSK  186 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~-------~A~~~Lg~~y~~G~Gv~~  186 (408)
                      ..++|+.+|+++.+..  ++.+.+++|.+|. ..+++++|+.+|++|.+..  ++       .+++.||.++.. .+   
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~---   93 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EE---   93 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TT---
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hC---
Confidence            4589999999998764  8999999999999 6899999999999998742  33       456666666654 23   


Q ss_pred             CccCHHHHHHHHHHHHhC-CCHHHHHHH
Q 015393          187 NDKDLRAGVALCARAAFL-GHIDALREL  213 (408)
Q Consensus       187 ~~~d~~kA~~~~~kAA~~-G~~~A~~~L  213 (408)
                         ++.+|+.+|+++... .+++....|
T Consensus        94 ---~~~~A~~~~~kal~~~~~~~~~~~l  118 (128)
T d1elra_          94 ---KYKDAIHFYNKSLAEHRTPDVLKKC  118 (128)
T ss_dssp             ---CHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhcCCCHHHHHHH
Confidence               899999999999764 455554444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.09  E-value=0.0036  Score=51.41  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             HHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 015393          136 EACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALR  211 (408)
Q Consensus       136 ~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~  211 (408)
                      ...+++|.+|+ ..+++.+|+++|++|.+..  ++.|+|++|.+|.. .|      ++.+|+.+|++|.+.  ++..+..
T Consensus        68 ~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~-lg------~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          68 SCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FG------FLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            46678999998 6789999999999998774  89999999999975 34      899999999999886  6888888


Q ss_pred             HHHHHHH
Q 015393          212 ELGHCLQ  218 (408)
Q Consensus       212 ~Lg~~y~  218 (408)
                      .|+.+..
T Consensus       140 ~l~~~~~  146 (153)
T d2fbna1         140 SYELCVN  146 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887763

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.08  E-value=0.0034  Score=52.25  Aligned_cols=67  Identities=15%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--CCHH
Q 015393          169 QALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--ELAA  244 (408)
Q Consensus       169 ~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G~~~  244 (408)
                      ....++|.+|.. .|      ++.+|+.+|.++...  .++.+.+.+|.+|..    -+++++|+.+|.+|...  .+..
T Consensus        65 ~~~~Nla~~~~~-l~------~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          65 AAFLNLAMCYLK-LR------EYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHhHHHHHHH-hh------hcccchhhhhhhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Confidence            356689999975 44      899999999999875  799999999999976    67999999999999976  3555


Q ss_pred             HH
Q 015393          245 VL  246 (408)
Q Consensus       245 A~  246 (408)
                      +.
T Consensus       134 ~~  135 (168)
T d1kt1a1         134 AR  135 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.98  E-value=0.0006  Score=56.07  Aligned_cols=92  Identities=13%  Similarity=0.036  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCC---CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCC
Q 015393          150 QNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGS---GGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYG  222 (408)
Q Consensus       150 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~---Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~G  222 (408)
                      ..+++|+..|++|.+.  .++++++++|.+|..-.   +.......+++|+..|++|.+.  .++.++++||.+|..-.-
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            3468999999999766  69999999999985311   1000122578999999999976  789999999999964211


Q ss_pred             -------ccccHHHHHHHHHHHHHcC
Q 015393          223 -------VRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       223 -------v~~d~~~A~~w~~kAA~~G  241 (408)
                             ...++.+|..+|++|.+..
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccC
Confidence                   1345688888898888754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.30  E-value=0.0064  Score=49.79  Aligned_cols=77  Identities=13%  Similarity=-0.032  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcC--------------CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc-------------CcHHHH
Q 015393          119 SESAHRFLKLCADAG--------------NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS-------------SHAQAL  171 (408)
Q Consensus       119 ~~~A~~~l~~aAe~G--------------~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~-------------G~~~A~  171 (408)
                      .++|+..|++|.+..              ...+.+++|.+|. ..+++++|+.+|++|...             ....++
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            577888999887632              2467889999998 689999999999998753             135588


Q ss_pred             HHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393          172 YSLAVIQFNGSGGSKNDKDLRAGVALCARAAF  203 (408)
Q Consensus       172 ~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~  203 (408)
                      +++|.+|.. .|      ++++|+++|++|.+
T Consensus       104 ~~~g~~~~~-lg------~~eeA~~~~~~Al~  128 (156)
T d2hr2a1         104 YSRALALDG-LG------RGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHH-TT------CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-HH------HHHHHHHHHHHHHH
Confidence            999999965 45      88999999999986

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.028  Score=49.47  Aligned_cols=112  Identities=19%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHHHHcC--C-----HHHHHHhHHHHhhccCCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcC
Q 015393          117 NWSESAHRFLKLCADAG--N-----VEACYTLGMIRFYCLQNRGSGASLMAKAAIS----S----HAQALYSLAVIQFNG  181 (408)
Q Consensus       117 ~~~~~A~~~l~~aAe~G--~-----~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y~~G  181 (408)
                      ...++|+.+|+++.+.-  +     ..+.+.||.+|+ ..+++++|+.+|++|.+.    +    ...++++++.+|.. 
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-  103 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  103 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-
Confidence            34689999999988753  2     358889999998 689999999999998763    2    24577888888864 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          182 SGGSKNDKDLRAGVALCARAAFL----------GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       182 ~Gv~~~~~d~~kA~~~~~kAA~~----------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .|      ++..+...|.++...          ........+|.+|..    ..+++++..+|.++...
T Consensus       104 ~~------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_         104 QG------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV  162 (366)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHHHHHHHHHH
Confidence            34      788899988888651          123466778888865    57889999999888764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.051  Score=49.16  Aligned_cols=118  Identities=7%  Similarity=-0.094  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHc--CCHHHH-HHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCc-----
Q 015393          119 SESAHRFLKLCADA--GNVEAC-YTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKND-----  188 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~-~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~-----  188 (408)
                      .++++.+++++.+.  .+..+. +.+|.+|. ..+.+++|+.+++++...  .+..+++++|.+|..-.-.....     
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHH-hccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            57889999988766  467775 56677776 678899999999999877  58999999999985421110000     


Q ss_pred             ----------------------------------------------------cCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 015393          189 ----------------------------------------------------KDLRAGVALCARAAFL--GHIDALRELG  214 (408)
Q Consensus       189 ----------------------------------------------------~d~~kA~~~~~kAA~~--G~~~A~~~Lg  214 (408)
                                                                          .+..+|+..|.++...  .+..+++.||
T Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  283 (334)
T d1dcea1         204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  283 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence                                                                0445566666666655  3567889999


Q ss_pred             HHHHcCCCccccHHHHHHHHHHHHHcC
Q 015393          215 HCLQDGYGVRQNIAEGRRFLVQANARE  241 (408)
Q Consensus       215 ~~y~~G~Gv~~d~~~A~~w~~kAA~~G  241 (408)
                      .+|..    ..+.++|+.+|++|.+..
T Consensus       284 ~~~~~----~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         284 RALDP----LLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             HHHCT----GGGHHHHHHHHHHHHHHC
T ss_pred             HHHHH----CCCHHHHHHHHHHHHHHC
Confidence            99964    779999999999998863

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.002  Score=49.43  Aligned_cols=47  Identities=28%  Similarity=0.472  Sum_probs=41.5

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhhc
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSKA  106 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~a  106 (408)
                      .++|..||+||+..||+.|     +|.|+..+..+|++|+++..++.+....
T Consensus        16 ~D~i~~LP~Eil~~Ils~L-----d~~dL~~~~~vcr~w~~l~~~~~lW~~~   62 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFL-----EPKDLLQAAQTCRYWRILAEDNLLWREK   62 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTS-----CHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            5789999999999999988     6789999999999999999888776543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.12  E-value=0.089  Score=47.47  Aligned_cols=94  Identities=11%  Similarity=-0.009  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHhHHHHhh-ccCCHHHHHHHHHHHHhc--CcHHHH-HHHHHHHHcCCCCCCCccCHH
Q 015393          119 SESAHRFLKLCADA--GNVEACYTLGMIRFY-CLQNRGSGASLMAKAAIS--SHAQAL-YSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       119 ~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~-~~~d~~~A~~~~~kAA~~--G~~~A~-~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      .++|+.+++++.+.  .++.+.+.+|.++.. ...+..+++.+++++.+.  .+..+. +.+|.+|.. .+      ...
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~------~~~  161 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AV------APA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CC------CHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-cc------ccH
Confidence            46789999988765  489999999988874 457899999999999877  366775 456666643 34      788


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQD  219 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~  219 (408)
                      +|+.+++++.+.  .+..+++++|.+|..
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999887  689999999999965

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.039  Score=48.50  Aligned_cols=93  Identities=14%  Similarity=0.017  Sum_probs=72.3

Q ss_pred             HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC---c----HHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC---
Q 015393          135 VEACYTLGMIRFYCLQNRGSGASLMAKAAISS---H----AQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL---  204 (408)
Q Consensus       135 ~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G---~----~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~---  204 (408)
                      ++.....+.+++ ..+++++|+.+|++|.+.-   +    ..|++.||.+|.. .|      ++++|+.+|+++.+.   
T Consensus        12 ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          12 AEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KG------ELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHHHHh
Confidence            445556677777 6899999999999998753   1    4588999999974 35      899999999999762   


Q ss_pred             -CC----HHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          205 -GH----IDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       205 -G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                       ++    ..+++.++.+|..    ..+...+...|.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~  119 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQ  119 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence             33    3577888888865    6788899999988875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.76  E-value=0.19  Score=41.98  Aligned_cols=62  Identities=11%  Similarity=-0.036  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      ...+..+++..|.. .|      ++.+|+.+++++...  .+..++..|+.+|..    ..+..+|++.|+++..
T Consensus        66 ~~~a~~~la~~~~~-~g------~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEIA-CG------RASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CC------CchHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            45677777777754 34      777888888888765  577788888888865    5677788888887744

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.30  E-value=0.036  Score=49.75  Aligned_cols=111  Identities=9%  Similarity=-0.089  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADA--GNVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~--G~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..++|+..|+++.+.  .|+.+..+||.+|. ..+++++|+..|+++.+.  .+..+.+.++.++... +      ...+
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~-~------~~~~   82 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-Q------ARKD   82 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-H------HHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-c------ccHH
Confidence            468899999988765  69999999999998 789999999999999987  4788888888777421 1      2334


Q ss_pred             HHHHHHHHHhCCCHH---HHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          194 GVALCARAAFLGHID---ALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       194 A~~~~~kAA~~G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      ++..+.++...+++.   +.+..+.++..    ..|.++|...+.+|.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhc
Confidence            444444444445443   34445555543    67999999999998774

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.0066  Score=46.42  Aligned_cols=45  Identities=22%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             CCcCCCCCHHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhh-cCchHHh
Q 015393           55 SDLFDALPDDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLA-LNSLVLS  104 (408)
Q Consensus        55 ~~~f~~lp~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~-~~~~~~~  104 (408)
                      -++|+.||++++..||+.|     ++.|+..+.++|+.|+... .++.+..
T Consensus         3 ~D~~~~LP~Ell~~I~s~L-----d~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYL-----QFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTS-----CHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             CCchhhCCHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4678999999999999988     6789999999999999875 4455544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.13  E-value=0.7  Score=40.91  Aligned_cols=112  Identities=10%  Similarity=0.008  Sum_probs=77.1

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHhHHHHhhccCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCccCHH
Q 015393          118 WSESAHRFLKLCADAGN---VEACYTLGMIRFYCLQNRGSGASLMAKAAISS--HAQALYSLAVIQFNGSGGSKNDKDLR  192 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G~---~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~~~~d~~  192 (408)
                      ..+++...|.++.+...   ......++.+.. ..++.+.|.+.|++|...+  .......++.+.....|      |.+
T Consensus       114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~------~~~  186 (308)
T d2onda1         114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKS  186 (308)
T ss_dssp             CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC------CHH
T ss_pred             cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc------CHH
Confidence            35677788887766442   223444444444 4577888888898888765  45556666666555445      778


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc
Q 015393          193 AGVALCARAAFL--GHIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR  240 (408)
Q Consensus       193 kA~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~  240 (408)
                      .|...|+++...  .++.....++.++..    ..|+.+|+.+|++|...
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Confidence            888999988875  466777777777654    45888899999998775

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.24  Score=39.17  Aligned_cols=76  Identities=7%  Similarity=0.060  Sum_probs=54.0

Q ss_pred             CHHHHHHhHHHHhh--ccCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CC
Q 015393          134 NVEACYTLGMIRFY--CLQNRGSGASLMAKAAISS---HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GH  206 (408)
Q Consensus       134 ~~~A~~~LG~~y~~--~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~  206 (408)
                      .+++.|++|..+..  ...|..+|+..|+.....+   ..+++|+||+.|.. .|      |+++|.++++++.+.  +|
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lg------dy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LG------EYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHccCCCc
Confidence            35677888877763  3356778888888887654   34788889888875 44      888898888888765  67


Q ss_pred             HHHHHHHHHH
Q 015393          207 IDALRELGHC  216 (408)
Q Consensus       207 ~~A~~~Lg~~  216 (408)
                      ..|+...-.+
T Consensus       107 ~qA~~L~~~I  116 (124)
T d2pqrb1         107 KQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.65  E-value=1.1  Score=36.77  Aligned_cols=62  Identities=8%  Similarity=-0.025  Sum_probs=53.3

Q ss_pred             CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHh
Q 015393          134 NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAF  203 (408)
Q Consensus       134 ~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~  203 (408)
                      ...+..+++..+. ..+++++|+.+++++...  .+..++..|+..|.. .|      +..+|++.|+++..
T Consensus        66 ~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~-~G------r~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SD------RQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHH
Confidence            4578899999988 689999999999999877  488999999999965 45      88999999998743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=0.45  Score=37.48  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCccccHHHHHHHHHHHHHc--C
Q 015393          167 HAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLG---HIDALRELGHCLQDGYGVRQNIAEGRRFLVQANAR--E  241 (408)
Q Consensus       167 ~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~~--G  241 (408)
                      .++++|++|..+..-.    ...|..+|+.+|+.....+   ..++.|.||+.|..    -+|+++|++++.++.+.  +
T Consensus        34 s~qt~F~YAw~Lv~S~----~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKST----DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             CHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTT
T ss_pred             CcchHHHHHHHHHcCC----cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHccCCC
Confidence            5678999999986432    3448999999999998754   24799999999986    78999999999999875  4


Q ss_pred             CHHH
Q 015393          242 LAAV  245 (408)
Q Consensus       242 ~~~A  245 (408)
                      +..|
T Consensus       106 n~qA  109 (124)
T d2pqrb1         106 NKQV  109 (124)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            4444

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.074  Score=41.36  Aligned_cols=46  Identities=24%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             CCcCCCCC----HHHHHHHHHHhhcCCCChHhHHHHHHHHHHHHHhhcCchHHhh
Q 015393           55 SDLFDALP----DDLVVSILCKLSSTARCPSDFVNVLITCKRMNGLALNSLVLSK  105 (408)
Q Consensus        55 ~~~f~~lp----~dl~~~il~~la~~~~sp~d~~~a~l~ck~~~~~~~~~~~~~~  105 (408)
                      -+++..||    |+|+..||+.|     ++.|+..+..+||.|+++..++.+...
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~L-----d~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYL-----DAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTC-----CHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            35677777    58888998877     678999999999999999887766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=2.9  Score=36.57  Aligned_cols=112  Identities=8%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHHcC--CHHHHHHhHHHHhhccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHH
Q 015393          118 WSESAHRFLKLCADAG--NVEACYTLGMIRFYCLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRA  193 (408)
Q Consensus       118 ~~~~A~~~l~~aAe~G--~~~A~~~LG~~y~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~k  193 (408)
                      ..+.|..+|+++.+.+  +.......+.+.....+|.+.|...|+++...  .++.....++.++.. .|      |+.+
T Consensus       149 ~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g------~~~~  221 (308)
T d2onda1         149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN------EDNN  221 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC------CHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cC------ChHH
Confidence            3578999999988665  56667777776666779999999999999987  467777777777653 55      8899


Q ss_pred             HHHHHHHHHhCC--CHH---HHHHHHHHHHcCCCccccHHHHHHHHHHHHH
Q 015393          194 GVALCARAAFLG--HID---ALRELGHCLQDGYGVRQNIAEGRRFLVQANA  239 (408)
Q Consensus       194 A~~~~~kAA~~G--~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~kAA~  239 (408)
                      |..+|++|....  +++   -.+..-.-|+.-.   .|++.+...++++.+
T Consensus       222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~---G~~~~~~~~~~r~~~  269 (308)
T d2onda1         222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNI---GDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence            999999998863  222   2222222232222   388888888888876

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.09  E-value=1.2  Score=39.15  Aligned_cols=63  Identities=14%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             ccCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 015393          148 CLQNRGSGASLMAKAAIS--SHAQALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFL--GHIDALRELGHCL  217 (408)
Q Consensus       148 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~~~~d~~kA~~~~~kAA~~--G~~~A~~~Lg~~y  217 (408)
                      ..+++++|+..|+++.+.  .++.+.++||.+|.. .|      ++++|+..|+++.+.  .+..+...++.++
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G------~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DG------DFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            468999999999999877  599999999999965 45      899999999999987  5677777777776