Citrus Sinensis ID: 015415

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
cHHHHcccccccccccccccccHHHHcccccccccccccEEEEEccccccccccccccHHHHHHHHHHHccccccccccccccccEEHHHHHHHHHHHHHHHccccEEEEccccccccccHHccccHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEcccccEEEEEEcccHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHc
cHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHccccEEEEccHHHcccccEEHcHHHHHHHccccEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEcEEHcccccccccccEEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHcccHHHHHHHHHHHHc
MAAIFLGVGaatalspsncfdskkfqlstrrslsgrkpwfLVVRsdgsvnlgsnqrsRRTQQLITNAVatkadsaastsaskQGHELLLFEALREGLEeemdrdphvcvmgedvghyggsykvtkgladkygdlrvldtpiaensftgmgIGAAmtglrpivegMNMGFLLLAFNQIsnncgmlhytsggqftipivirgpggvgrqlgaEHSQRLESYfqsipgiqmvacSTPYNAKGLMKAAIRSENPVILFEHVLLYNlkeripdeeyicnleeaemvrpgehvTILTYSRMRYHVMQAAKTLvnkgydpevidirslkpfdlytignsIKKTHRVLIVEECMRTGGIGASLTAAITENFhdyldapivclssqdvptpyagtleewtvVQPAQIVTAVEQLCQ
MAAIFLGVgaatalspsncfdskkfqlstrrslsgrkpwfLVVRsdgsvnlgsnqrsrrtQQLITNAVatkadsaastsaskqgheLLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNleeaemvrpGEHVTILTYSRMRYHVMQAAKtlvnkgydpeVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRTQQLITNavatkadsaastsaskQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTipivirgpggvgrQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
***IFLGVGAATALSPSNCFD*************GRKPWFLVVR******************************************LLLFEALR*********DPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE****
********GAATALSP***********************************************************************LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRTQQLITNAV**************QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
******GVGAATALSP******************************************************************QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
O64688406 Pyruvate dehydrogenase E1 yes no 0.997 1.0 0.869 0.0
Q9C6Z3406 Pyruvate dehydrogenase E1 no no 0.987 0.990 0.849 0.0
Q2QM55391 Pyruvate dehydrogenase E1 yes no 0.884 0.920 0.844 1e-179
Q10G39400 Pyruvate dehydrogenase E1 no no 0.796 0.81 0.895 1e-174
Q32RS0328 Pyruvate dehydrogenase E1 N/A no 0.791 0.981 0.826 1e-160
Q32RM2325 Pyruvate dehydrogenase E1 N/A no 0.791 0.990 0.810 1e-158
Q8MA03326 Pyruvate dehydrogenase E1 N/A no 0.791 0.987 0.791 1e-154
Q1ACL0326 Pyruvate dehydrogenase E1 N/A no 0.788 0.984 0.747 1e-149
P51266331 Pyruvate dehydrogenase E1 N/A no 0.791 0.972 0.708 1e-139
Q1XDM1331 Pyruvate dehydrogenase E1 N/A no 0.786 0.966 0.715 1e-139
>sp|O64688|ODPB3_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic OS=Arabidopsis thaliana GN=E1-BETA-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/407 (86%), Positives = 377/407 (92%), Gaps = 1/407 (0%)

Query: 1   MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRT 60
           M+AI  G GAATALSP N  DS K    +R SLS R   ++V  SD S + GS+  +RR+
Sbjct: 1   MSAILQGAGAATALSPFNSIDSNKLVAPSRSSLSVRSKRYIVAGSD-SKSFGSSLVARRS 59

Query: 61  QQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGS 120
           + LI NAV TKAD+AAS+++SK GHELLLFEAL+EGLEEEMDRDPHVCVMGEDVGHYGGS
Sbjct: 60  EPLIPNAVTTKADTAASSTSSKPGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGS 119

Query: 121 YKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNN 180
           YKVTKGLADK+GDLRVLDTPI EN+FTGMGIGAAMTGLRP++EGMNMGFLLLAFNQISNN
Sbjct: 120 YKVTKGLADKFGDLRVLDTPICENAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNN 179

Query: 181 CGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL 240
           CGMLHYTSGGQFTIP+VIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL
Sbjct: 180 CGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL 239

Query: 241 MKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 300
           MKAAIRSENPVILFEHVLLYNLKE IPDEEYICNLEEAEMVRPGEH+TILTYSRMRYHVM
Sbjct: 240 MKAAIRSENPVILFEHVLLYNLKESIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVM 299

Query: 301 QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360
           QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS+KKTHRVLIVEECMRTGGIGASLTAAI 
Sbjct: 300 QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAIN 359

Query: 361 ENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407
           ENFHDYLDAP++CLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
Sbjct: 360 ENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1
>sp|Q9C6Z3|ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 BETA PE=2 SV=1 Back     alignment and function description
>sp|Q2QM55|ODPB3_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os12g0616900 PE=2 SV=1 Back     alignment and function description
>sp|Q10G39|ODPB4_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0645100 PE=2 SV=1 Back     alignment and function description
>sp|Q32RS0|ODPB_STAPU Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1 Back     alignment and function description
>sp|Q32RM2|ODPB_ZYGCR Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2 Back     alignment and function description
>sp|Q8MA03|ODPB_CHAGL Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1 Back     alignment and function description
>sp|Q1ACL0|ODPB_CHAVU Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1 Back     alignment and function description
>sp|P51266|ODPB_PORPU Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1 Back     alignment and function description
>sp|Q1XDM1|ODPB_PORYE Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
255557267409 pyruvate dehydrogenase, putative [Ricinu 1.0 0.995 0.907 0.0
224141339411 predicted protein [Populus trichocarpa] 1.0 0.990 0.914 0.0
15226781406 pyruvate dehydrogenase E1 component subu 0.997 1.0 0.869 0.0
21593379406 putative pyruvate dehydrogenase E1 beta 0.997 1.0 0.867 0.0
224077614418 predicted protein [Populus trichocarpa] 1.0 0.973 0.889 0.0
193290724408 putative pyruvate dehydrogenase E1 beta 1.0 0.997 0.872 0.0
225430650405 PREDICTED: pyruvate dehydrogenase E1 com 0.987 0.992 0.870 0.0
449463905410 PREDICTED: pyruvate dehydrogenase E1 com 0.997 0.990 0.868 0.0
359483879402 PREDICTED: LOW QUALITY PROTEIN: pyruvate 0.987 1.0 0.884 0.0
297826927409 transketolase family protein [Arabidopsi 0.997 0.992 0.860 0.0
>gi|255557267|ref|XP_002519664.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223541081|gb|EEF42637.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/409 (90%), Positives = 387/409 (94%), Gaps = 2/409 (0%)

Query: 1   MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGS--VNLGSNQRSR 58
           MA  F G+GA TAL+PSN  DS KF+L +RRSLS RK   LV+RSDGS  VNLGSN R R
Sbjct: 1   MATTFQGLGAFTALTPSNSIDSNKFKLLSRRSLSERKASLLVIRSDGSNNVNLGSNSRGR 60

Query: 59  RTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYG 118
           R + LITNAVATKAD++A++SASK GHELLLFEALREGLEEEMDRDP VCVMGEDVGHYG
Sbjct: 61  RAEHLITNAVATKADASAASSASKPGHELLLFEALREGLEEEMDRDPTVCVMGEDVGHYG 120

Query: 119 GSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQIS 178
           GSYKVTKGLA K+GDLRVLDTPIAENSFTGMGIGAAMTGLRP+VEGMNMGFLLLAFNQIS
Sbjct: 121 GSYKVTKGLATKFGDLRVLDTPIAENSFTGMGIGAAMTGLRPVVEGMNMGFLLLAFNQIS 180

Query: 179 NNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAK 238
           NNCGMLHYTSGGQF IPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAK
Sbjct: 181 NNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAK 240

Query: 239 GLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYH 298
           GLMKAAIRSENPVILFEHVLLYNLKERIPDE+YICNLEEAEMVRPGEHVTILTYSRMRYH
Sbjct: 241 GLMKAAIRSENPVILFEHVLLYNLKERIPDEDYICNLEEAEMVRPGEHVTILTYSRMRYH 300

Query: 299 VMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAA 358
           VMQAAKTLVNKGYDPEVIDIRSLKPFDL+TIGNS+KKTHRVLIVEECMRTGGIGASLTAA
Sbjct: 301 VMQAAKTLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAA 360

Query: 359 ITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407
           ITENF+DYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
Sbjct: 361 ITENFNDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141339|ref|XP_002324031.1| predicted protein [Populus trichocarpa] gi|222867033|gb|EEF04164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15226781|ref|NP_181006.1| pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana] gi|5702375|gb|AAD47282.1|AF167983_1 putative pyruvate dehydrogenase beta subunit [Arabidopsis thaliana] gi|3128205|gb|AAC26685.1| putative pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|109134117|gb|ABG25057.1| At2g34590 [Arabidopsis thaliana] gi|330253902|gb|AEC08996.1| pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593379|gb|AAM65328.1| putative pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224077614|ref|XP_002305328.1| predicted protein [Populus trichocarpa] gi|118482251|gb|ABK93053.1| unknown [Populus trichocarpa] gi|222848292|gb|EEE85839.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|193290724|gb|ACF17670.1| putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum] Back     alignment and taxonomy information
>gi|225430650|ref|XP_002269441.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463905|ref|XP_004149671.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359483879|ref|XP_003633031.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297826927|ref|XP_002881346.1| transketolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327185|gb|EFH57605.1| transketolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2062351406 AT2G34590 [Arabidopsis thalian 0.997 1.0 0.813 4.1e-175
TAIR|locus:2202476406 PDH-E1 BETA "pyruvate dehydrog 0.990 0.992 0.797 1.5e-170
GENEDB_PFALCIPARUM|PF14_0441415 PF14_0441 "pyruvate dehydrogen 0.759 0.744 0.501 1.1e-76
UNIPROTKB|Q8IL09415 PF14_0441 "Pyruvate dehydrogen 0.759 0.744 0.501 1.1e-76
TIGR_CMR|GSU_2436328 GSU_2436 "dehydrogenase comple 0.771 0.957 0.460 1.3e-68
DICTYBASE|DDB_G0276417356 pdhB "pyruvate dehydrogenase E 0.791 0.904 0.417 1.5e-65
UNIPROTKB|Q0C0R7470 pdhB "Pyruvate dehydrogenase c 0.791 0.685 0.414 6.7e-65
UNIPROTKB|Q2GHV6332 ECH_0149 "Putative pyruvate de 0.786 0.963 0.416 2.6e-63
TIGR_CMR|ECH_0149332 ECH_0149 "putative pyruvate de 0.786 0.963 0.416 2.6e-63
UNIPROTKB|Q2GIH9332 APH_1308 "Putative pyruvate de 0.776 0.951 0.415 3e-62
TAIR|locus:2062351 AT2G34590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
 Identities = 331/407 (81%), Positives = 349/407 (85%)

Query:     1 MAAIFLGVGAATALSPSNCFDSKKFQLSTRRSLSGRKPWFLVVRSDGSVNLGSNQRSRRT 60
             M+AI  G GAATALSP N  DS K    +R SLS R   ++V  SD S + GS+  +RR+
Sbjct:     1 MSAILQGAGAATALSPFNSIDSNKLVAPSRSSLSVRSKRYIVAGSD-SKSFGSSLVARRS 59

Query:    61 QQLITNXXXXXXXXXXXXXXXXQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGS 120
             + LI N                 GHELLLFEAL+EGLEEEMDRDPHVCVMGEDVGHYGGS
Sbjct:    60 EPLIPNAVTTKADTAASSTSSKPGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGS 119

Query:   121 YKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNN 180
             YKVTKGLADK+GDLRVLDTPI EN+FTGMGIGAAMTGLRP++EGMNMGFLLLAFNQISNN
Sbjct:   120 YKVTKGLADKFGDLRVLDTPICENAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNN 179

Query:   181 CGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL 240
             CGMLHYTSGGQFT             QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL
Sbjct:   180 CGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL 239

Query:   241 MKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVM 300
             MKAAIRSENPVILFEHVLLYNLKE IPDEEYICNLEEAEMVRPGEH+TILTYSRMRYHVM
Sbjct:   240 MKAAIRSENPVILFEHVLLYNLKESIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVM 299

Query:   301 QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360
             QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS+KKTHRVLIVEECMRTGGIGASLTAAI 
Sbjct:   300 QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAIN 359

Query:   361 ENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407
             ENFHDYLDAP++CLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
Sbjct:   360 ENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
GO:0003824 "catalytic activity" evidence=IEA
GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=NAS
GO:0004802 "transketolase activity" evidence=ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0048868 "pollen tube development" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
TAIR|locus:2202476 PDH-E1 BETA "pyruvate dehydrogenase E1 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF14_0441 PF14_0441 "pyruvate dehydrogenase E1 beta subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IL09 PF14_0441 "Pyruvate dehydrogenase E1 beta subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2436 GSU_2436 "dehydrogenase complex, E1 component, beta subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276417 pdhB "pyruvate dehydrogenase E1 beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C0R7 pdhB "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, beta subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GHV6 ECH_0149 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0149 ECH_0149 "putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GIH9 APH_1308 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6B8T1ODPB_GRATL1, ., 2, ., 4, ., 10.71330.78860.9938N/Ano
Q32RS0ODPB_STAPU1, ., 2, ., 4, ., 10.82600.79110.9817N/Ano
P51266ODPB_PORPU1, ., 2, ., 4, ., 10.70800.79110.9728N/Ano
O44451ODPB_CAEEL1, ., 2, ., 4, ., 10.39200.83290.9630yesno
Q2QM55ODPB3_ORYSJ1, ., 2, ., 4, ., 10.84480.88450.9207yesno
Q09171ODPB_SCHPO1, ., 2, ., 4, ., 10.38200.84520.9398yesno
Q8MA03ODPB_CHAGL1, ., 2, ., 4, ., 10.79190.79110.9877N/Ano
Q1ACL0ODPB_CHAVU1, ., 2, ., 4, ., 10.74760.78860.9846N/Ano
Q9C6Z3ODPB2_ARATH1, ., 2, ., 4, ., 10.84910.98770.9901nono
O64688ODPB3_ARATH1, ., 2, ., 4, ., 10.86970.99751.0yesno
Q1XDM1ODPB_PORYE1, ., 2, ., 4, ., 10.71560.78620.9667N/Ano
Q32RM2ODPB_ZYGCR1, ., 2, ., 4, ., 10.81050.79110.9907N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.976
4th Layer1.2.4.10.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0080008401
hypothetical protein (411 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_II001653
SubName- Full=Putative uncharacterized protein; (355 aa)
•••• •• 0.986
gw1.X.5451.1
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)
••• ••• 0.975
grail3.0009040502
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)
••• ••• 0.975
estExt_Genewise1_v1.C_410201
hypothetical protein (414 aa)
• •  •• 0.963
gw1.XIX.2128.1
hypothetical protein (435 aa)
• •  •• 0.961
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
• •  •• 0.960
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
• •  •• 0.955
estExt_fgenesh4_pg.C_LG_VIII0227
hypothetical protein (588 aa)
• •  •  0.946
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•    •• 0.944
LPD4
precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)
•    •• 0.924

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 0.0
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-165
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 1e-158
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 1e-128
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 1e-115
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 1e-108
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 1e-103
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 3e-59
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 5e-42
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 3e-29
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 8e-18
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 1e-14
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 1e-12
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 1e-11
PRK12571641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 2e-10
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 8e-09
cd06586154 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding 2e-06
PRK12315581 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate 1e-05
PLN02234641 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate 2e-05
PLN02225701 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate 0.004
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information 
 Score =  642 bits (1659), Expect = 0.0
 Identities = 258/323 (79%), Positives = 283/323 (87%)

Query: 85  HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAEN 144
            E+ LFEALRE ++EEM RDP V V+GEDVGHYGGSYKVTKGL +KYGDLRVLDTPIAEN
Sbjct: 2   SEVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAEN 61

Query: 145 SFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGV 204
           SFTGM IGAAMTGLRPIVEGMNMGFLLLAFNQISNN GMLHYTSGG FTIPIVIRGPGGV
Sbjct: 62  SFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGV 121

Query: 205 GRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKE 264
           GRQLGAEHSQRLESYFQS+PG+Q+VACSTPYNAKGL+K+AIRS NPVI FEHVLLYNLKE
Sbjct: 122 GRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYNLKE 181

Query: 265 RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324
            IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K LV KGYDPE+ID+ SLKP 
Sbjct: 182 EIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPL 241

Query: 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
           DL TI  S+KKTH+VLIVEECM+TGGIGA L A I E+  D LDAPIV LSSQDVPTPY 
Sbjct: 242 DLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYN 301

Query: 385 GTLEEWTVVQPAQIVTAVEQLCQ 407
           G LEE TV+QPAQI+ AVEQ+  
Sbjct: 302 GPLEEATVIQPAQIIEAVEQIIT 324

Length = 327
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 100.0
PRK05899624 transketolase; Reviewed 100.0
PRK12753663 transketolase; Reviewed 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PLN02790654 transketolase 100.0
PTZ00089661 transketolase; Provisional 100.0
KOG0523632 consensus Transketolase [Carbohydrate transport an 100.0
PRK12754663 transketolase; Reviewed 100.0
PRK09405891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
TIGR03186889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK13012896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.97
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 99.91
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 99.9
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.9
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 99.89
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 99.88
PRK09622407 porA pyruvate flavodoxin oxidoreductase subunit al 99.87
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 99.84
PRK05261785 putative phosphoketolase; Provisional 99.81
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 99.81
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 99.8
TIGR00759885 aceE pyruvate dehydrogenase E1 component, homodime 99.66
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 99.6
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 99.57
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 99.51
COG2609887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.34
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 99.33
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.25
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 99.24
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 99.21
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.1
COG3957793 Phosphoketolase [Carbohydrate transport and metabo 98.7
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 98.69
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 98.69
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 98.65
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 98.49
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.78
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.49
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 97.28
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 96.98
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.78
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 96.62
PRK07586 514 hypothetical protein; Validated 96.16
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 96.12
PRK05858 542 hypothetical protein; Provisional 96.1
PRK08199 557 thiamine pyrophosphate protein; Validated 95.87
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 95.79
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 95.61
PRK07064 544 hypothetical protein; Provisional 95.55
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 95.51
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 95.49
PRK12474 518 hypothetical protein; Provisional 95.46
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 95.44
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 95.44
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 95.3
PRK08322 547 acetolactate synthase; Reviewed 95.21
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 95.14
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 95.07
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 95.05
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 94.96
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 94.89
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 94.8
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 94.79
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 94.74
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 94.63
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 94.63
PLN02470 585 acetolactate synthase 94.61
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 94.59
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 94.55
PRK08155 564 acetolactate synthase catalytic subunit; Validated 94.53
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 94.37
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 94.24
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 94.12
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 94.04
PRK07092 530 benzoylformate decarboxylase; Reviewed 93.93
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 93.92
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 93.83
PRK07524 535 hypothetical protein; Provisional 93.82
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 93.76
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 93.75
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 93.72
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 93.71
PRK08611 576 pyruvate oxidase; Provisional 93.69
PRK06163202 hypothetical protein; Provisional 93.68
PRK08266 542 hypothetical protein; Provisional 93.61
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 93.45
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 93.19
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 93.17
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 93.11
PLN02573 578 pyruvate decarboxylase 93.1
PRK09124 574 pyruvate dehydrogenase; Provisional 93.08
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 92.93
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 92.92
PRK06546 578 pyruvate dehydrogenase; Provisional 92.77
PRK08617 552 acetolactate synthase; Reviewed 92.75
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 92.72
PRK11269 591 glyoxylate carboligase; Provisional 92.62
PRK08273 597 thiamine pyrophosphate protein; Provisional 92.61
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 92.57
PRK08327 569 acetolactate synthase catalytic subunit; Validated 92.56
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 92.47
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 92.43
PRK06112 578 acetolactate synthase catalytic subunit; Validated 92.28
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 92.18
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 92.13
PRK06457 549 pyruvate dehydrogenase; Provisional 92.12
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 91.9
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 91.89
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 91.75
PRK08155564 acetolactate synthase catalytic subunit; Validated 91.44
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 91.41
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 91.35
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 91.32
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 91.3
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 91.18
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 90.68
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 90.6
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 90.38
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 89.93
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 89.81
PRK06457549 pyruvate dehydrogenase; Provisional 89.67
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 89.62
PRK08617552 acetolactate synthase; Reviewed 89.47
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 89.42
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 89.25
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 88.91
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 88.61
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 88.41
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 88.11
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 88.02
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 87.89
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 87.67
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 87.63
PRK08322547 acetolactate synthase; Reviewed 87.37
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 86.92
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 86.34
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 86.25
cd02005183 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, 86.25
PRK08266542 hypothetical protein; Provisional 86.03
PRK06546578 pyruvate dehydrogenase; Provisional 85.84
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 85.63
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 85.16
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 84.53
PF09363203 XFP_C: XFP C-terminal domain; InterPro: IPR018969 84.32
PRK05778301 2-oxoglutarate ferredoxin oxidoreductase subunit b 84.25
PRK06154565 hypothetical protein; Provisional 84.1
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 84.09
PRK09124574 pyruvate dehydrogenase; Provisional 83.75
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 83.66
PRK05858542 hypothetical protein; Provisional 83.48
KOG0225394 consensus Pyruvate dehydrogenase E1, alpha subunit 82.74
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 82.36
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 82.35
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 82.12
PRK08199557 thiamine pyrophosphate protein; Validated 82.0
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 81.85
PRK07092530 benzoylformate decarboxylase; Reviewed 81.13
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 81.06
PRK05899 624 transketolase; Reviewed 81.03
PRK06154 565 hypothetical protein; Provisional 80.58
PRK07524535 hypothetical protein; Provisional 80.42
PRK06112578 acetolactate synthase catalytic subunit; Validated 80.17
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-78  Score=572.78  Aligned_cols=322  Identities=50%  Similarity=0.839  Sum_probs=313.6

Q ss_pred             cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415           86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM  165 (407)
Q Consensus        86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~  165 (407)
                      ++++++|++++|.+.|++|++|+++|+|++.+||+|++|++|.++||++|+|||||+|.+++|+|.|||+.|+||++++|
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 015415          166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI  245 (407)
Q Consensus       166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~  245 (407)
                      +.+|++.++|||.|++++.+|||||++.+|+|++++.|..-..|.+|||++|++|.++|||+|++|+||.|++++++.|+
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI  160 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI  160 (324)
T ss_pred             ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987766788999999999999999999999999999999999999


Q ss_pred             hcCCCEEEeecccccc-CCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415          246 RSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF  324 (407)
Q Consensus       246 ~~~~Pv~ir~~r~~y~-~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf  324 (407)
                      ++++||++++++.+|+ .+.++|+++|.+|+||+++.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||+|+
T Consensus       161 rd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~Pl  240 (324)
T COG0022         161 RDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPL  240 (324)
T ss_pred             cCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCcc
Confidence            9999999999999999 678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415          325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ  404 (407)
Q Consensus       325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~  404 (407)
                      |.++|.++++||+++++|||....+|+|++|++.+.|++|++|++|+.|++.+|.+.|+...||+.+.+++++|++++++
T Consensus       241 D~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~~  320 (324)
T COG0022         241 DKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVKK  320 (324)
T ss_pred             CHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhC
Q 015415          405 LCQ  407 (407)
Q Consensus       405 ll~  407 (407)
                      +++
T Consensus       321 v~~  323 (324)
T COG0022         321 VLE  323 (324)
T ss_pred             Hhh
Confidence            874

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 1e-61
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-61
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 3e-60
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 3e-56
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-54
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 1e-54
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 1e-53
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 4e-53
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 4e-53
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-46
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-46
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 9e-46
2o1x_A629 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From 6e-07
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 200/324 (61%), Gaps = 5/324 (1%)
Query: 86  ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
           ++ + +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
           F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG               
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
             + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +   
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 266 IPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321
            P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +G + EVI++R++
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVP 380
           +P D+ TI  S+ KT+ ++ VE      G+GA + A I E    ++LDAP V ++  DVP
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 313
Query: 381 TPYAGTLEEWTVVQPAQIVTAVEQ 404
            PYA  LE+ ++ Q   I+ A+++
Sbjct: 314 MPYAKILEDNSIPQVKDIIFAIKK 337
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 0.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 1e-146
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 1e-144
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 1e-141
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 1e-135
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 1e-134
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 9e-09
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 6e-05
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
 Score =  508 bits (1311), Expect = 0.0
 Identities = 126/339 (37%), Positives = 210/339 (61%), Gaps = 7/339 (2%)

Query: 74  SAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGD 133
             +         ++ + +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD
Sbjct: 2   RGSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGD 61

Query: 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFT 193
            R++DTPI+E  F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG   
Sbjct: 62  KRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQP 121

Query: 194 IPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253
           +PIV RGP G    + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++
Sbjct: 122 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVV 181

Query: 254 FEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 309
            E+ L+Y +    P E    +++  + +A++ R G H+T++++SR   H ++AA  L  +
Sbjct: 182 LENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE 241

Query: 310 GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN--FHDYL 367
           G + EVI++R+++P D+ TI  S+ KT+ ++ VE      G+GA + A I E   F ++L
Sbjct: 242 GVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAF-NFL 300

Query: 368 DAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 406
           DAP V ++  DVP PYA  LE+ ++ Q   I+ A+++  
Sbjct: 301 DAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTL 339
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2qtc_A886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
3ahc_A845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.95
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.86
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 99.68
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 94.25
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 94.23
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 93.82
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 93.75
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 93.72
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 93.7
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.42
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 93.1
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.04
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 92.92
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 92.56
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 92.51
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 92.24
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 91.73
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 91.58
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 91.53
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 91.28
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 91.02
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.63
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 88.88
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 88.71
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 87.91
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 87.11
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 84.61
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 84.56
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 84.33
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 83.56
3uk1_A 711 Transketolase; structural genomics, seattle struct 83.07
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 82.63
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 81.37
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 80.65
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 80.32
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 80.29
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 80.25
3l84_A 632 Transketolase; TKT, structural genomics, center fo 80.04
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
Probab=100.00  E-value=8.1e-69  Score=534.98  Aligned_cols=324  Identities=38%  Similarity=0.683  Sum_probs=301.3

Q ss_pred             cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415           84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE  163 (407)
Q Consensus        84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~  163 (407)
                      .+++++|++++++|.+++++|++|+++++|++.++|+|..+++|.++|||+||||+||+|++|+++|+|+|++|+|||++
T Consensus        12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~   91 (341)
T 2ozl_B           12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE   91 (341)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence            44688999999999999999999999999999877878778999999999999999999999999999999999999999


Q ss_pred             ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415          164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA  243 (407)
Q Consensus       164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~  243 (407)
                      ++|++|++|++|||++++|+++||+||+.++||+++++.|..+++|+||||++|++|+++|||+|++|+|++|+++++++
T Consensus        92 ~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~  171 (341)
T 2ozl_B           92 FMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS  171 (341)
T ss_dssp             CSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Confidence            66889999999999999999999999999999999998777788999999999999999999999999999999999999


Q ss_pred             HHhcCCCEEEeeccccccCCCCC----CCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEec
Q 015415          244 AIRSENPVILFEHVLLYNLKERI----PDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR  319 (407)
Q Consensus       244 a~~~~~Pv~ir~~r~~y~~~~~v----~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~  319 (407)
                      |+++++|++||++|.+|.....+    +++++.+++|+++++++|.|++||++|+++..|++|++.|+++|++++|||++
T Consensus       172 a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~  251 (341)
T 2ozl_B          172 AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR  251 (341)
T ss_dssp             HHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             HHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeee
Confidence            99999999999998876533223    44566788999999999999999999999999999999999999999999999


Q ss_pred             ccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh-ccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHH
Q 015415          320 SLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQI  398 (407)
Q Consensus       320 ~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e-~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I  398 (407)
                      +++|||++.|.++++++++|++|||+...||||++|++++.+ +++..++.|+.++|++|.|++++..+++++|+|+++|
T Consensus       252 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~I  331 (341)
T 2ozl_B          252 TIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDI  331 (341)
T ss_dssp             EEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHHH
T ss_pred             eecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHHH
Confidence            999999999999999999999999999889999999999998 7655567899999999999999888999999999999


Q ss_pred             HHHHHHHhC
Q 015415          399 VTAVEQLCQ  407 (407)
Q Consensus       399 ~~~i~~ll~  407 (407)
                      +++|+++++
T Consensus       332 ~~~i~~~l~  340 (341)
T 2ozl_B          332 IFAIKKTLN  340 (341)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999874
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 1e-58
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 5e-56
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 1e-54
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 2e-54
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 7e-48
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 3e-45
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 4e-26
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 4e-26
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 2e-24
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 2e-24
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 1e-22
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 9e-22
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  187 bits (477), Expect = 1e-58
 Identities = 78/186 (41%), Positives = 122/186 (65%)

Query: 86  ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
           ++ + +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  
Sbjct: 3   QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 62

Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
           F G+ +GAAM GLRPI E M   F + A +Q+ N+    +Y SGG   +PIV RGP G  
Sbjct: 63  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 122

Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
             + A+HSQ   +++   PG+++V+     +AKGL+K+AIR  NPV++ E+ L+Y +   
Sbjct: 123 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 182

Query: 266 IPDEEY 271
            P E  
Sbjct: 183 FPPEAQ 188
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 99.98
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.97
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.96
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.96
d1w85b2132 Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d 99.96
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.96
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 99.95
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 99.7
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 99.69
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 99.5
d2c42a3157 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 99.44
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 99.42
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 98.72
d2ieaa3186 Pyruvate dehydrogenase E1 component, C-domain {Esc 98.71
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 98.4
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.85
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 96.79
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.61
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 96.43
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 96.32
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 96.27
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 96.26
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 96.01
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.72
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 95.5
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 95.03
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 94.99
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 94.28
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 92.86
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 92.76
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 92.13
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 91.86
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 87.57
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 87.5
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 85.86
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=2.9e-47  Score=350.15  Aligned_cols=200  Identities=36%  Similarity=0.611  Sum_probs=188.9

Q ss_pred             ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415           85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG  164 (407)
Q Consensus        85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t  164 (407)
                      ..+++++|++++|.++|++|++++++++|++..+|.|+++++|.++|||+|++|+||+|++++|+|+|||++|+|||+++
T Consensus         3 ~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~   82 (204)
T d1qs0b1           3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI   82 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             ceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415          165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAA  244 (407)
Q Consensus       165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a  244 (407)
                      ++.+|+.+++|||+|++|+++||++|++++|++++.++|.....|++|+|+++++|+++|||+|++|+|+.|++.+++.|
T Consensus        83 ~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a  162 (204)
T d1qs0b1          83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS  162 (204)
T ss_dssp             SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988777777899999999999999999999999999999999999


Q ss_pred             HhcCCCEEEeeccccccCCCCCCCccccccCCc--eEEeecC
Q 015415          245 IRSENPVILFEHVLLYNLKERIPDEEYICNLEE--AEMVRPG  284 (407)
Q Consensus       245 ~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk--~~vl~eG  284 (407)
                      ++.++||+++++|.+|+.+.+++++.+..|+|+  +.++++|
T Consensus       163 ~~~~~Pvi~~e~k~ly~~~~~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         163 IECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESS
T ss_pred             HhCCCcEEEEeeHHHhCCCccCCCccCCCCcccCccccCCCC
Confidence            999999999999999997777777777778887  6777775
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure