Citrus Sinensis ID: 015416
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 407 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M3A8 | 629 | Pentatricopeptide repeat- | yes | no | 0.936 | 0.605 | 0.650 | 1e-142 | |
| Q9SY69 | 913 | Pentatricopeptide repeat- | no | no | 0.791 | 0.352 | 0.322 | 9e-40 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.685 | 0.433 | 0.302 | 2e-33 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.663 | 0.436 | 0.316 | 1e-32 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.668 | 0.427 | 0.287 | 6e-30 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.756 | 0.421 | 0.267 | 2e-29 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.651 | 0.431 | 0.287 | 5e-28 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.668 | 0.438 | 0.276 | 5e-28 | |
| Q9CAN6 | 590 | Pentatricopeptide repeat- | no | no | 0.665 | 0.459 | 0.274 | 1e-27 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.719 | 0.486 | 0.291 | 3e-27 |
| >sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/383 (65%), Positives = 307/383 (80%), Gaps = 2/383 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKGFV DPVVYSYLM+G V++ D+DGV +L++ELKEKLGG V DGVVYG LMKGYFMK
Sbjct: 227 MAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMK 286
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
ME+EAMECY EAVGENS V+MSA+A N VL+AL NGKFDEALKLFD +K EHNPP+ L
Sbjct: 287 EMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHL 346
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNVM +GYC G+F++A+EVFR+MG+++CSPDTLSFNNL++QLC N +LAEAE+
Sbjct: 347 AVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEK 406
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM +K V PDEYTYGLLMD CF+ ++D+GA Y++ MV+S LRPNLAVYNRL +L+
Sbjct: 407 LYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLI 466
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV +LDD + SEE
Sbjct: 467 KAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEE 526
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360
LQEFVK EL K GRE ++ KLME+KER KAEAKA+E AE K++ IA+LIP K
Sbjct: 527 LQEFVKEELRKGGREGDLEKLMEEKERLKAEAKAKELADAEEKKKAQSINIAALIPPKAV 586
Query: 361 DKVGGTEMADNANANEAASVAEA 383
++ E A NEA V EA
Sbjct: 587 EE--KKETAKLLWENEAGGVEEA 607
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 169/332 (50%), Gaps = 10/332 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG AD VY+ L+ G++ GD D F+ELK K V DG+V + M+ +F K
Sbjct: 278 MLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKC--TVYDGIVNATFMEYWFEK 335
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++EAME Y + + +M N +L+ GK DEA LF+ M + H PP L
Sbjct: 336 GNDKEAMESYRSLL--DKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAPPNIL 393
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-P---DTLSFNNLIDQLCKNGMLA 176
+VN + +M + G F +AI F+K+G S P D L + N++ + C+ GML
Sbjct: 394 SVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRFCEQGMLT 453
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
EAE + E + + D ++ ++DA + R+DD +MVD LR R+
Sbjct: 454 EAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFGARVF 513
Query: 237 GKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295
G+L++ G L E+ M ++ K D + Y +++ L DG LD+ +IVG ++ +
Sbjct: 514 GELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVGEMIRH-NV 572
Query: 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKER 327
+ L+EF+ K GR EE+ K++ R
Sbjct: 573 GVTTVLREFIIEVFEKAGRREEIEKILNSVAR 604
|
May function as a transcriptional regulator essential for early embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 153/291 (52%), Gaps = 12/291 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M GF + V Y ++ + G + L +++E+ + D V Y ++ G
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKD 276
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKR 119
G + A +NE E K + N+++ CN G++D+ KL D +K + +P
Sbjct: 277 GSLDNAFNLFNEM--EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP--- 331
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ +F+V+ D + +G+ ++A ++ ++M + +P+T+++N+LID CK L EA
Sbjct: 332 ---NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
++ M KG +PD T+ +L++ + NR+DDG FR+M G+ N YN LV
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 240 VQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289
Q G L+ AK F MV ++++ D SYK ++ L D G+L++ LEI G I
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 148/284 (52%), Gaps = 14/284 (4%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEK--LGGVVSDGVVYGSLMKGYFMKGM 62
GF D V Y ++ + G+S LF +++E+ VV +V SL K G
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK----DGS 260
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
++A+ +NE E +K V +S++ LCN+GK+D+ K+ M + P
Sbjct: 261 FDDALSLFNEM--EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP----- 313
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ +F+ + D + +G+ +A E++ +M +PDT+++N+LID CK L EA +++
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M KG PD TY +L+++ + RVDDG FR++ GL PN YN LV Q
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433
Query: 243 GMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEI 285
G L+ AK F MV + + +Y ++ L D G+L++ LEI
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 45/317 (14%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D + + L+ G G L +++ E G + V YG ++ G
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY--GCQPNAVTYGPVLNVMCKSGQTA 245
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
AME + E ++K+ AV + ++D LC +G D A LF+ M+ K + N+
Sbjct: 246 LAMELLRKM--EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM-----KGITTNI 298
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N++ G+C GR+ D ++ R M + + +P+ ++F+ LID K G L EAEEL+ E
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 185 MSDKGVNPDEYTYGLLMDA-CFE----------------------------------VNR 209
M +G+ PD TY L+D C E NR
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKF 268
+DDG FRKM G+ + YN L+ ++G L+ AK F MV +K+ + +YK
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478
Query: 269 MMKALSDGGKLDEILEI 285
++ L D G+ ++ LEI
Sbjct: 479 LLDGLCDNGESEKALEI 495
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 14/322 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M ++GF D + Y YLM G + G D LF + + + V++ +L+ G+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK------PEIVIFNTLIHGFVTH 366
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++A ++ V V NS++ G AL++ M+N+ P
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVP-DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP--- 422
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ S+ ++ DG+C G+ +A V +M P+T+ FN LI CK + EA E
Sbjct: 423 --NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ EM KG PD YT+ L+ EV+ + R M+ G+ N YN L+ +
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 540
Query: 241 QVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299
+ G + EA+ + MV + +D+ +Y ++K L G++D+ + +L DG +
Sbjct: 541 RRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNI 600
Query: 300 ELQEFVKGELSKEGREEEVVKL 321
+ G L + G EE V+
Sbjct: 601 SCNILING-LCRSGMVEEAVEF 621
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 136/275 (49%), Gaps = 10/275 (3%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
AD V+YS ++ + D LF E+ K G+ D Y SL+ G +A
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK--GIRPDVFTYSSLISCLCNYGRWSDAS 295
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
++ + + + V NS++DA GK EA KLFD M P N+ ++
Sbjct: 296 RLLSDML--ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP-----NIVTY 348
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N + +G+C R +A ++F M C PD +++N LI+ CK + + EL+ +MS
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G+ + TY L+ F+ + D+ F++MV G+ PN+ YN L+ L + G L++
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 248 AKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDE 281
A F+ + K K++ D +Y M + + GK+++
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 10/282 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +KGF AD ++Y+ L+ GF G D +L ++ ++ + D V + +L+ + +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR--KITPDVVAFSALIDCFVKE 330
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA E + E + + V S++D C + D+A + D M ++ P
Sbjct: 331 GKLREAEELHKEMI--QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP--- 385
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ +FN++ +GYC D +E+FRKM DT+++N LI C+ G L A+E
Sbjct: 386 --NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ EM + V PD +Y +L+D + + F K+ S + ++ +YN ++ +
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503
Query: 241 QVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDE 281
+D+A F + +K +K D +Y M+ L G L E
Sbjct: 504 NASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSE 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 148/284 (52%), Gaps = 13/284 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKG D V Y ++ G + G+ D L ++++ G + +D V+Y +++ G
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK--GKIEADVVIYNTIIDGLCKY 263
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKR 119
++A + +N+ E +K N ++ LCN G++ +A +L D ++ NP
Sbjct: 264 KHMDDAFDLFNKM--ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP--- 318
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNLIDQLCKNGMLAEA 178
+L FN + D + +G+ +A +++ +M + + C PD +++N LI CK + E
Sbjct: 319 ---DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375
Query: 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238
E++ EMS +G+ + TY L+ F+ D+ F++MV G+ P++ YN L+
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435
Query: 239 LVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
L G ++ A F+ M K+ +K+D +Y M++AL GK+++
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 16/309 (5%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D V Y+ ++ G R GD+ L +++E+ V +D Y +++ G +
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER--NVKADVFTYSTIIDSLCRDGCID 245
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-DEALKLFDRMKNEHNPPKRLAVN 123
A+ + E E +K S V NS++ LC GK+ D AL L D + E P N
Sbjct: 246 AAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP------N 297
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ +FNV+ D + +G+ ++A E++++M SP+ +++N L+D C L+EA +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M +PD T+ L+ V RVDDG FR + GL N Y+ LV Q G
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417
Query: 244 MLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGI----LDDGGIEFS 298
+ A+ F MV + D +Y ++ L D GKL++ LEI + +D G + ++
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477
Query: 299 EELQEFVKG 307
++ KG
Sbjct: 478 TIIEGMCKG 486
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 407 | ||||||
| 356516061 | 632 | PREDICTED: pentatricopeptide repeat-cont | 0.886 | 0.571 | 0.718 | 1e-151 | |
| 449456969 | 624 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.628 | 0.697 | 1e-149 | |
| 307135874 | 624 | pentatricopeptide repeat-containing prot | 0.928 | 0.605 | 0.696 | 1e-148 | |
| 255551261 | 660 | pentatricopeptide repeat-containing prot | 0.980 | 0.604 | 0.712 | 1e-144 | |
| 356509257 | 631 | PREDICTED: pentatricopeptide repeat-cont | 0.874 | 0.564 | 0.733 | 1e-144 | |
| 297816148 | 632 | EMB1796 [Arabidopsis lyrata subsp. lyrat | 0.936 | 0.602 | 0.660 | 1e-143 | |
| 15229107 | 629 | pentatricopeptide repeat-containing prot | 0.936 | 0.605 | 0.650 | 1e-140 | |
| 224118282 | 590 | predicted protein [Populus trichocarpa] | 0.867 | 0.598 | 0.726 | 1e-139 | |
| 357463931 | 704 | Pentatricopeptide repeat-containing prot | 0.798 | 0.461 | 0.715 | 1e-136 | |
| 225455374 | 672 | PREDICTED: pentatricopeptide repeat-cont | 0.886 | 0.537 | 0.724 | 1e-135 |
| >gi|356516061|ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 263/366 (71%), Positives = 309/366 (84%), Gaps = 5/366 (1%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+GF DP+VY YLMLG R D DGV RL+EEL+E+LGGVV DGVV+G LMKGYF+KGME
Sbjct: 228 RGFSPDPLVYHYLMLGHTRVSDGDGVLRLYEELRERLGGVVEDGVVFGCLMKGYFLKGME 287
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+EAMECY E +G+ KMSAV NSVLDAL NG+ DEAL+LFDRM E+ PPKRL+VN
Sbjct: 288 KEAMECYEEVLGKK---KMSAVGYNSVLDALSKNGRLDEALRLFDRMMKEYEPPKRLSVN 344
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNLIDQLCKNGMLAEAEELY 182
LGSFNV+ DGYCG+GRF++A+EVFRK+GEYR CSPDTLSFNNLI++LC NG + EAEE+Y
Sbjct: 345 LGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLSFNNLIERLCDNGRIVEAEEVY 404
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
GEM KGV+PDE+TYGLLMDACF NR DD A YFRKMVDSGLRPNLAVYNRLV LV+V
Sbjct: 405 GEMEGKGVSPDEFTYGLLMDACFRENRADDSAAYFRKMVDSGLRPNLAVYNRLVDGLVKV 464
Query: 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
G +DEAK FF++MVKKLKMD ASY+FMMK LSD G+LDE+L+IV +LDD G++F EE Q
Sbjct: 465 GKIDEAKGFFELMVKKLKMDVASYQFMMKVLSDEGRLDEMLQIVDTLLDDNGVDFDEEFQ 524
Query: 303 EFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-FGD 361
EFVKGEL KEGREEE+ KL+E+KER KAEAKA++ EAAEAAKRSARAA+ASL+PSK FG+
Sbjct: 525 EFVKGELRKEGREEELTKLIEEKERLKAEAKAKDIEAAEAAKRSARAAVASLLPSKLFGN 584
Query: 362 KVGGTE 367
K +E
Sbjct: 585 KETDSE 590
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456969|ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Cucumis sativus] gi|449511036|ref|XP_004163845.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/397 (69%), Positives = 322/397 (81%), Gaps = 5/397 (1%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KGF DP++Y YLM G VR D DGVF+LFEELKEKLG V DGVVYG+LMKGYFMK
Sbjct: 232 MIEKGFAPDPLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGATVEDGVVYGNLMKGYFMK 291
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
MEEEAM+CY E VG+NS VKMSA+A NSVLDALC NGKF EAL LFDRM EH PP+ L
Sbjct: 292 EMEEEAMKCYEETVGDNSVVKMSAIAYNSVLDALCRNGKFGEALTLFDRMTKEHRPPRHL 351
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLGSFNVM DGYC +GRFK+AIEVF KMG+YRC PDTLSFNNLI+QLC NGMLAEAE
Sbjct: 352 AVNLGSFNVMVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSFNNLIEQLCNNGMLAEAEM 411
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYG M DKGVNPDE+TYGLLMD+CF+ NR DD A YFRKMVDSGLRPN+AVYN LV +LV
Sbjct: 412 LYGTMDDKGVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMVDSGLRPNIAVYNILVDELV 471
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
++G +D+AKSFFD+MVKKLKMD +SY+F+MKALS+ GK+DEIL +V +LDD GIEFSEE
Sbjct: 472 KLGKIDDAKSFFDLMVKKLKMDASSYQFIMKALSESGKMDEILNVVDTLLDDDGIEFSEE 531
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-F 359
LQEFV+GEL KE REE++ KL+E+KER KAEAKA+EAEAAEA KRSA+AA++SL+ SK F
Sbjct: 532 LQEFVRGELRKENREEDLAKLVEEKERLKAEAKAKEAEAAEAQKRSAKAAVSSLLSSKLF 591
Query: 360 GDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATA 396
+K G E + NE SV + + L E++
Sbjct: 592 ANKEGEKE----SVVNEMQSVEQEDDSGKTELAESSP 624
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135874|gb|ADN33740.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/389 (69%), Positives = 320/389 (82%), Gaps = 11/389 (2%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKGF DP++Y YLM G VR D DGVF+LFEELKEKLGG V DGVVYG+LMKGYFMK
Sbjct: 232 MIVKGFAPDPLIYHYLMAGCVRSSDPDGVFKLFEELKEKLGGTVEDGVVYGNLMKGYFMK 291
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
MEEEAM+CY E VG+N VKMSA+A NSVLDALC +GKF EAL LFDRM EH PP+ L
Sbjct: 292 EMEEEAMKCYEETVGDNPVVKMSAIAYNSVLDALCKHGKFSEALTLFDRMTKEHRPPRHL 351
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNVM DGYC +GRFK+AI VF +MG+YRCSPDTLSFNNLI+QLC NGMLAEAE
Sbjct: 352 AVNLGTFNVMVDGYCIKGRFKEAIGVFEEMGDYRCSPDTLSFNNLIEQLCNNGMLAEAEM 411
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYG M +KGVNPDE+TYGLLM +CF+ NR DD A YFRKMVDSGLRPN+AVYN LVG+LV
Sbjct: 412 LYGTMGEKGVNPDEFTYGLLMHSCFQKNRADDAAAYFRKMVDSGLRPNIAVYNILVGELV 471
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
++G +DEAKSFFD+MVKKLKMD ++Y+F+MKALS+ GK+DE+L +V +LDD GIEFSEE
Sbjct: 472 KLGKVDEAKSFFDLMVKKLKMDASNYQFIMKALSESGKMDEVLNVVDTLLDDDGIEFSEE 531
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-F 359
LQEFV+GEL KE REE++ KL+E+KER KAEAKA+EAEAAEA KRSA+AA++SL+ SK F
Sbjct: 532 LQEFVRGELRKEDREEDLAKLVEEKERLKAEAKAKEAEAAEAQKRSAKAAVSSLLSSKLF 591
Query: 360 GDKVGGTEMADNANANEAASVAEAQAGKE 388
+K G E + V E Q+G++
Sbjct: 592 ANKEGEKE----------SVVNEMQSGQQ 610
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551261|ref|XP_002516677.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544172|gb|EEF45696.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 290/407 (71%), Positives = 338/407 (83%), Gaps = 8/407 (1%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGG-VVSDGVVYGSLMKGYFMKG 61
V+GF DP+VY YLM+G VR+ DS+GVFRLF+ELKEK+GG V+ DGVVYG LMKGYFMKG
Sbjct: 240 VRGFTPDPLVYHYLMVGCVRNLDSEGVFRLFDELKEKMGGGVIEDGVVYGDLMKGYFMKG 299
Query: 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121
ME EAMECY EAVGENS V+M+AVA NSVLDALC NGKFD ALKLFDRM +HNPP+ LA
Sbjct: 300 MENEAMECYEEAVGENSKVRMNAVAYNSVLDALCKNGKFDVALKLFDRMLQQHNPPRYLA 359
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
VNLGSFNV+ DGYC QGRF+DAI+VFRKMG+YRCSPD LS+NNLIDQLCKNGML EAE+L
Sbjct: 360 VNLGSFNVIVDGYCAQGRFEDAIDVFRKMGDYRCSPDVLSYNNLIDQLCKNGMLVEAEDL 419
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
YGEM KGV PDEYTYGLLMD C E +RVDDGA YFRKMVD+GLRPNLAVYNRLV KLV+
Sbjct: 420 YGEMDGKGVKPDEYTYGLLMDTCLEKDRVDDGAGYFRKMVDTGLRPNLAVYNRLVDKLVK 479
Query: 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301
+ +DEAKSF+ +MVKKLKMD+ASYKFMM+AL+D ++DE++++V G+LDD IE EL
Sbjct: 480 LKKIDEAKSFYYLMVKKLKMDNASYKFMMEALADNDQMDELIKMVDGMLDDEAIELDLEL 539
Query: 302 QEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-FG 360
QEF K L + GR EE+++LMEKKE+EKAEAKA+EAEAAEAAKRSA+AA+ASL+PSK FG
Sbjct: 540 QEFAKELLGRVGRGEELMELMEKKEKEKAEAKAKEAEAAEAAKRSAKAAVASLLPSKLFG 599
Query: 361 DKVGGTEMAD-NANANEAASVAEAQAGKEVNLEEATAVESASADANT 406
+K TE + N N +EAASV E +EEAT V S AD NT
Sbjct: 600 NKEAETESKEANGNGSEAASVNEGAP-----VEEATIVGSVPADMNT 641
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509257|ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 264/360 (73%), Positives = 306/360 (85%), Gaps = 4/360 (1%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KGF DP+VY YLMLG R D D + RL+EEL+E+LGGVV DG+V+G LMKGYF+KGME
Sbjct: 228 KGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGME 287
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+EAMECY EA+G+ KMSAV NSVLDAL NG+FDEAL+LFDRM EH P KRL+VN
Sbjct: 288 KEAMECYEEALGKK---KMSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVN 344
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
LGSFNV+ DGYC +GRF++A+EVFRKMGEYRCSPDTLSFNNLID+LC NG + EAEE+YG
Sbjct: 345 LGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYG 404
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
EM KGV+PDE+TYGLLMDACF NR DD A YFRKMVDSGLRPNLAVYNRLVG LV+VG
Sbjct: 405 EMEGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVG 464
Query: 244 MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+DEAK FF++MVKKLKMD SY+F+MK LSD G+LDE+L+IV +LDD G++F EE QE
Sbjct: 465 KIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDEMLKIVDTLLDDNGVDFDEEFQE 524
Query: 304 FVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-FGDK 362
FVKGEL KEGREEE+ KLME+KER KAEAKA+E EAAEAAKRSARAA+ASL+PSK FG+K
Sbjct: 525 FVKGELRKEGREEELTKLMEEKERLKAEAKAKEIEAAEAAKRSARAAVASLLPSKLFGNK 584
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816148|ref|XP_002875957.1| EMB1796 [Arabidopsis lyrata subsp. lyrata] gi|297321795|gb|EFH52216.1| EMB1796 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/383 (66%), Positives = 309/383 (80%), Gaps = 2/383 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M V+G V DPVVYSYLM+G V++ D+DGV +L+EELKEKLGG V DGVVYG LMKGYFMK
Sbjct: 230 MGVRGLVVDPVVYSYLMMGCVKNSDADGVLKLYEELKEKLGGFVDDGVVYGQLMKGYFMK 289
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
ME+EAMECY EA+GENS V+MSA+A N VL+AL NGKFDEALKLFD +K EHNPP+RL
Sbjct: 290 EMEKEAMECYEEAIGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRRL 349
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNV+ DGYC +GR+++A+EVFR+MG+YRCSPDTLSFNNL++QLC NG+LAEAE+
Sbjct: 350 AVNLGTFNVVVDGYCAEGRYEEAMEVFRQMGDYRCSPDTLSFNNLMNQLCDNGLLAEAEK 409
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM +K V PDEYTYGLLMD CF+ ++D+GA Y++ MV+S LRPNLAVYNRL +L+
Sbjct: 410 LYGEMEEKKVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLI 469
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV +LDD + SEE
Sbjct: 470 KAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEE 529
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360
LQEFVK EL K GRE ++ KLME+KER KAEAKA+E AE K+S IASLI K
Sbjct: 530 LQEFVKEELRKGGREGDLEKLMEEKERLKAEAKAKELAEAEEKKKSQSINIASLITPKAV 589
Query: 361 DKVGGTEMADNANANEAASVAEA 383
++ E A NEA SV EA
Sbjct: 590 EE--KKETAKLLWENEAGSVEEA 610
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229107|ref|NP_190493.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75183725|sp|Q9M3A8.1|PP273_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49240; AltName: Full=Protein EMBRYO DEFECTIVE 1796 gi|6723394|emb|CAB66403.1| putative protein [Arabidopsis thaliana] gi|20466250|gb|AAM20442.1| putative protein [Arabidopsis thaliana] gi|31711738|gb|AAP68225.1| At3g49240 [Arabidopsis thaliana] gi|58013028|gb|AAW62967.1| mitochondrial embryo-defective 1796 [Arabidopsis thaliana] gi|332644993|gb|AEE78514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/383 (65%), Positives = 307/383 (80%), Gaps = 2/383 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKGFV DPVVYSYLM+G V++ D+DGV +L++ELKEKLGG V DGVVYG LMKGYFMK
Sbjct: 227 MAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMK 286
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
ME+EAMECY EAVGENS V+MSA+A N VL+AL NGKFDEALKLFD +K EHNPP+ L
Sbjct: 287 EMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHL 346
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNVM +GYC G+F++A+EVFR+MG+++CSPDTLSFNNL++QLC N +LAEAE+
Sbjct: 347 AVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEK 406
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM +K V PDEYTYGLLMD CF+ ++D+GA Y++ MV+S LRPNLAVYNRL +L+
Sbjct: 407 LYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLI 466
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV +LDD + SEE
Sbjct: 467 KAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEE 526
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360
LQEFVK EL K GRE ++ KLME+KER KAEAKA+E AE K++ IA+LIP K
Sbjct: 527 LQEFVKEELRKGGREGDLEKLMEEKERLKAEAKAKELADAEEKKKAQSINIAALIPPKAV 586
Query: 361 DKVGGTEMADNANANEAASVAEA 383
++ E A NEA V EA
Sbjct: 587 EE--KKETAKLLWENEAGGVEEA 607
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118282|ref|XP_002317780.1| predicted protein [Populus trichocarpa] gi|222858453|gb|EEE96000.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/355 (72%), Positives = 296/355 (83%), Gaps = 2/355 (0%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGS--LMKGYFMK 60
+KGF DPV+Y YLM+G VR GDSD VFRL+EELKEK+GG V V LMKGYFM+
Sbjct: 234 IKGFSPDPVIYHYLMVGCVRSGDSDSVFRLYEELKEKMGGEVVGNGVVVYGGLMKGYFMR 293
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
GM++EAMECY E + EN K SAVANNSVLDALC NG+FDEALKLF+RM EHNPPK L
Sbjct: 294 GMKKEAMECYGEFLRENLRGKWSAVANNSVLDALCKNGEFDEALKLFERMLREHNPPKSL 353
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
V+LGSFNVM DGYC +GR+KDAIEV KMG+YRC+PDTLSFNNLIDQLC NGML EAE
Sbjct: 354 VVDLGSFNVMVDGYCLEGRYKDAIEVLLKMGDYRCNPDTLSFNNLIDQLCSNGMLVEAET 413
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+YGEM KGV PDEYTY LLMD C + NR+DDGA YFRKMV+SG RPNLAVYNRLV +LV
Sbjct: 414 VYGEMDGKGVKPDEYTYVLLMDTCIKENRIDDGAAYFRKMVESGSRPNLAVYNRLVDELV 473
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+VG +DEAKSF+D+MVKKLKMDD SYKFMMK +SD GKLDE+L++ GI+DD EFSEE
Sbjct: 474 KVGKIDEAKSFYDMMVKKLKMDDESYKFMMKTMSDVGKLDEVLKMAEGIIDDEEAEFSEE 533
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLI 355
LQEFVKGEL K+GREEE+ KL+E+KER+KAEAKA+E EAAEA+KRSA+A I SLI
Sbjct: 534 LQEFVKGELRKDGREEELTKLLEEKERQKAEAKAKEVEAAEASKRSAKAVINSLI 588
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463931|ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355491295|gb|AES72498.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/327 (71%), Positives = 269/327 (82%), Gaps = 2/327 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M GF DP+VY YLMLG R D DGV R++EELKEKLGGVV DGVV G LMKGYF+K
Sbjct: 232 MNASGFAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEKLGGVVEDGVVLGCLMKGYFLK 291
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
GME+EAMECY E E KMS +A NSVLDAL NGKFDEA++LFDRM EHNPP +L
Sbjct: 292 GMEKEAMECYQEVFVEGK--KMSDIAYNSVLDALAKNGKFDEAMRLFDRMIKEHNPPAKL 349
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLGSFNVM DGYC +G+FK+AIEVFR MGE RC PDTLSFNNLI+QLC NGM+ EAEE
Sbjct: 350 AVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDTLSFNNLIEQLCNNGMILEAEE 409
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+YGEM KGVNPDEYTYGLLMD CF+ NR DD A+YF+KMV+SGLRPNLAVYNRLV LV
Sbjct: 410 VYGEMEGKGVNPDEYTYGLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLV 469
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+VG +D+AK FFD+MVKKLKMD ASY+FMMK LS+ G+LD++L+IV +LDD G++F EE
Sbjct: 470 KVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGRLDDVLQIVNMLLDDNGVDFDEE 529
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKER 327
QEFVK EL KEGREE++ KLME+KER
Sbjct: 530 FQEFVKVELRKEGREEDLAKLMEEKER 556
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455374|ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/363 (72%), Positives = 312/363 (85%), Gaps = 2/363 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KGF ADPVVYSYLMLG VR+ ++DGVF L+EELKEKLG V VV GSLMKGYF++
Sbjct: 227 MLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEKLGDVDDGVVV-GSLMKGYFLR 285
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
GME+EAM+CY EAVGE S ++MSAVA NSVLDAL NGKFDEA+ LF+RM E+NPP+RL
Sbjct: 286 GMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEAMLLFERMMAEYNPPRRL 345
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++NLGSFNVM DG+C GRFKDAIEVFRKMGE RCS DTLS+NNLI+QLC NGMLAEAEE
Sbjct: 346 SMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYNNLIEQLCNNGMLAEAEE 405
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM++KGVNPDE+TY LLMD CF+ NR DDGA YFRKMV++GLRPNLAVY++LV LV
Sbjct: 406 LYGEMANKGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVETGLRPNLAVYSKLVDGLV 465
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+VG +DEAKSF+D+MVKKLKMD+ASYKF+MKAL + GK D++L+++G +LDD EF+ +
Sbjct: 466 KVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDVLKMIGDMLDDDASEFTTD 525
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSK-F 359
LQEFVK EL KEGREE+VVKLME KEREKAEA+A+EA A EAAK SA+AA++SL+PSK F
Sbjct: 526 LQEFVKEELRKEGREEDVVKLMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLF 585
Query: 360 GDK 362
G K
Sbjct: 586 GSK 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 407 | ||||||
| TAIR|locus:2082871 | 629 | emb1796 "embryo defective 1796 | 0.769 | 0.497 | 0.661 | 2.2e-112 | |
| TAIR|locus:2012868 | 913 | GRP23 "glutamine-rich protein | 0.756 | 0.337 | 0.308 | 1.3e-33 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.685 | 0.433 | 0.292 | 3.2e-32 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.668 | 0.439 | 0.297 | 1.2e-31 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.665 | 0.425 | 0.268 | 1.2e-27 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.695 | 0.455 | 0.274 | 3.8e-27 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.690 | 0.384 | 0.268 | 9.7e-27 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.658 | 0.436 | 0.274 | 7.4e-26 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.663 | 0.457 | 0.273 | 8.4e-26 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.572 | 0.442 | 0.296 | 2e-25 |
| TAIR|locus:2082871 emb1796 "embryo defective 1796" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 207/313 (66%), Positives = 256/313 (81%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMK 60
M VKGFV DPVVYSYLM+G V++ D+DGV +L++ELKEKL LMKGYFMK
Sbjct: 227 MAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMK 286
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
ME+EAMECY EAVGENS V+MSA+A N VL+AL NGKFDEALKLFD +K EHNPP+ L
Sbjct: 287 EMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHL 346
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNVM +GYC G+F++A+EVFR+MG+++CSPDTLSFNNL++QLC N +LAEAE+
Sbjct: 347 AVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEK 406
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM +K V PDEYTYGLLMD CF+ ++D+GA Y++ MV+S LRPNLAVYNRL +L+
Sbjct: 407 LYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLI 466
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV +LDD + SEE
Sbjct: 467 KAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEE 526
Query: 301 LQEFVKGELSKEG 313
LQEFVK EL K G
Sbjct: 527 LQEFVKEELRKGG 539
|
|
| TAIR|locus:2012868 GRP23 "glutamine-rich protein 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 98/318 (30%), Positives = 155/318 (48%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMK 60
M KG AD VY+ L+ G++ GD D F+ELK K M+ +F K
Sbjct: 278 MLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVNAT--FMEYWFEK 335
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++EAME Y + + +M N +L+ GK DEA LF+ M + H PP L
Sbjct: 336 GNDKEAMESYRSLL--DKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAPPNIL 393
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-P---DTLSFNNLIDQLCKNGMLA 176
+VN + +M + G F +AI F+K+G S P D L + N++ + C+ GML
Sbjct: 394 SVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRFCEQGMLT 453
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
EAE + E + + D ++ ++DA + R+DD +MVD LR R+
Sbjct: 454 EAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFGARVF 513
Query: 237 GKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295
G+L++ G L E+ M ++ K D + Y +++ L DG LD+ +IVG ++ +
Sbjct: 514 GELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVGEMIRHN-V 572
Query: 296 EFSEELQEFVKGELSKEG 313
+ L+EF+ K G
Sbjct: 573 GVTTVLREFIIEVFEKAG 590
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 85/291 (29%), Positives = 149/291 (51%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMK 60
M GF + V Y ++ + G + L +++E+ ++ G
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKD 276
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKR 119
G + A +NE E K + N+++ CN G++D+ KL D +K + +P
Sbjct: 277 GSLDNAFNLFNEM--EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP--- 331
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ +F+V+ D + +G+ ++A ++ ++M + +P+T+++N+LID CK L EA
Sbjct: 332 ---NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
++ M KG +PD T+ +L++ + NR+DDG FR+M G+ N YN LV
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 240 VQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289
Q G L+ AK F MV ++++ D SYK ++ L D G+L++ LEI G I
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 84/282 (29%), Positives = 143/282 (50%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMKGMEE 64
GF D V Y ++ + G+S LF +++E+ ++ G +
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER--NIKASVVQYSIVIDSLCKDGSFD 262
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A+ +NE E +K V +S++ LCN+GK+D+ K+ M + P ++
Sbjct: 263 DALSLFNEM--EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP-----DV 315
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+F+ + D + +G+ +A E++ +M +PDT+++N+LID CK L EA +++
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M KG PD TY +L+++ + RVDDG FR++ GL PN YN LV Q G
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEI 285
L+ AK F MV + + +Y ++ L D G+L++ LEI
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 76/283 (26%), Positives = 142/283 (50%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMKGMEE 64
G + V Y ++ + G + L +++E+ ++ G G +
Sbjct: 223 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKHGSLD 280
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKRLAVN 123
A +NE E + + + N ++ CN G++D+ KL D +K + NP N
Sbjct: 281 NAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP------N 332
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ +F+V+ D + +G+ ++A E+ ++M +PDT+++ +LID CK L +A ++
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M KG +P+ T+ +L++ + NR+DDG FRKM G+ + YN L+ ++G
Sbjct: 393 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452
Query: 244 MLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEI 285
L+ AK F MV +K+ + +YK ++ L D G+ ++ LEI
Sbjct: 453 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEI 495
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 81/295 (27%), Positives = 139/295 (47%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGD-SDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFM 59
M +KGF AD ++Y+ L+ GF G DG L + +K K+ L+ +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA---LIDCFVK 329
Query: 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
+G EA E + E + + V S++D C + D+A + D M ++ P
Sbjct: 330 EGKLREAEELHKEMI--QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP-- 385
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ +FN++ +GYC D +E+FRKM DT+++N LI C+ G L A+
Sbjct: 386 ---NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
EL+ EM + V PD +Y +L+D + + F K+ S + ++ +YN ++ +
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502
Query: 240 VQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+D+A F + +K +K D +Y M+ L G L E + + +DG
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 9.7e-27, P = 9.7e-27
Identities = 79/294 (26%), Positives = 133/294 (45%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLXXXXXXXXXXXXLMKGYFMK 60
M ++GF D + Y YLM G + G D LF + + L+ G+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP------EIVIFNTLIHGFVTH 366
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++A ++ V V NS++ G AL++ M+N+ P
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVP-DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP--- 422
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ S+ ++ DG+C G+ +A V +M P+T+ FN LI CK + EA E
Sbjct: 423 --NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ EM KG PD YT+ L+ EV+ + R M+ G+ N YN L+ +
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 540
Query: 241 QVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+ G + EA+ + MV + +D+ +Y ++K L G++D+ + +L DG
Sbjct: 541 RRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 7.4e-26, P = 7.4e-26
Identities = 77/281 (27%), Positives = 135/281 (48%)
Query: 4 KGFV-ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEK-LXXXXXXXXXXXXLMKGYFMKG 61
KG + AD V+YS ++ + D LF E+ K + + Y G
Sbjct: 233 KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNY---G 289
Query: 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121
+A ++ + + + V NS++DA GK EA KLFD M P
Sbjct: 290 RWSDASRLLSDML--ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP---- 343
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
N+ ++N + +G+C R +A ++F M C PD +++N LI+ CK + + EL
Sbjct: 344 -NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
+ +MS +G+ + TY L+ F+ + D+ F++MV G+ PN+ YN L+ L +
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 242 VGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDE 281
G L++A F+ + K K++ D +Y M + + GK+++
Sbjct: 463 NGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 78/285 (27%), Positives = 142/285 (49%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEEL-KEKLXXXXXXXXXXXXLMKGYFM 59
M VKG D V Y ++ G + G+ D L ++ K K+ + Y
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKY-- 263
Query: 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPK 118
K M++ A + +N+ E +K N ++ LCN G++ +A +L D ++ NP
Sbjct: 264 KHMDD-AFDLFNKM--ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP-- 318
Query: 119 RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNLIDQLCKNGMLAE 177
+L FN + D + +G+ +A +++ +M + + C PD +++N LI CK + E
Sbjct: 319 ----DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEE 374
Query: 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237
E++ EMS +G+ + TY L+ F+ D+ F++MV G+ P++ YN L+
Sbjct: 375 GMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLD 434
Query: 238 KLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
L G ++ A F+ M K+ +K+D +Y M++AL GK+++
Sbjct: 435 GLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 72/243 (29%), Positives = 121/243 (49%)
Query: 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKN 112
L+ G+ + EEAM N+ V +K V +++D+LC NG + AL LFD+M+N
Sbjct: 148 LINGFCLGNRMEEAMSMVNQMV--EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN 205
Query: 113 EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172
P ++ + + +G C GR++DA + R M + + PD ++FN LID K
Sbjct: 206 YGIRP-----DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKE 260
Query: 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDA-CFEVNRVDDGATYFRKMVDSGLRPNLAV 231
G +AEELY EM + P+ +TY L++ C E VD+ F M G P++
Sbjct: 261 GKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCME-GCVDEARQMFYLMETKGCFPDVVA 319
Query: 232 YNRLVGKLVQVGMLDEA-KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290
Y L+ + +D+A K F+++ K L + +Y +++ GK + E+ ++
Sbjct: 320 YTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMV 379
Query: 291 DDG 293
G
Sbjct: 380 SRG 382
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M3A8 | PP273_ARATH | No assigned EC number | 0.6501 | 0.9361 | 0.6057 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.5__1274__AT3G49240.1 | annotation not avaliable (632 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 407 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| PRK14521 | 186 | PRK14521, rpsP, 30S ribosomal protein S16; Provisi | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.004 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.004 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 8e-15
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
PD +++N LID CK G + EA +L+ EM +G+ P+ YTY +L+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 18/295 (6%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G AD +Y+ L+ + G D +F +F E+ GV ++ +G+L+ G G
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN--AGVEANVHTFGALIDGCARAGQVA 524
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A Y +N VK V N+++ A +G D A + MK E +P + +
Sbjct: 525 KAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEY--RCSPD--TLSFNNLIDQLC-KNGMLAEAE 179
G+ + G+ A EV++ + EY + +P+ T++ N+ C + G A
Sbjct: 583 GA---LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS-----CSQKGDWDFAL 634
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
+Y +M KGV PDE + L+D +D + G++ Y+ L+G
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 240 VQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+A + DI KL+ ++ ++ AL +G +L + LE++ + G
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 22/250 (8%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G V D V L+ + + GD + +F+ + EK V + S++ GY + G E
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSE 307
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR--LAV 122
EA+ Y E +S V + + ++ + A K H R +
Sbjct: 308 EALCLYYEM--RDSGVSIDQFTFSIMIRIFSRLALLEHA-------KQAHAGLIRTGFPL 358
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ + + D Y GR +DA VF +M + +S+N LI +G +A E++
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV-DSGLRPNLAVYNRLVGKLVQ 241
M +GV P+ T+ ++ AC + G F+ M + ++P Y ++ L +
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 242 VGMLDEAKSF 251
G+LDEA +
Sbjct: 475 EGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 65/244 (26%), Positives = 96/244 (39%), Gaps = 41/244 (16%)
Query: 74 VGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPK--------------- 118
+ +S S +NS L ALC++G+ ++ALKL + M+ P
Sbjct: 41 LSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR 100
Query: 119 -----------------RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161
L V LG N M + G A VF KM E D S
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLG--NAMLSMFVRFGELVHAWYVFGKMPER----DLFS 154
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
+N L+ K G EA LY M GV PD YT+ ++ C + + G +V
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
G ++ V N L+ V+ G + A+ FD M + D S+ M+ + G+ E
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLE 271
Query: 282 ILEI 285
LE+
Sbjct: 272 GLEL 275
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171
++N + DGYC +G+ ++A+++F +M + P+ +++ LID LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 32/259 (12%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAME 68
D VV++ L+ + G D F + E+K + + D + G+LMK G + A E
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 69 CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL-------- 120
Y ++K + +++ G +D AL ++D MK + P +
Sbjct: 601 VYQMI--HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 121 AVNLG----SFNVMAD----GY--------------CGQGRFKDAIEVFRKMGEYRCSPD 158
A + G +F ++ D G +K A+E++ + + P
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
+ N LI LC+ L +A E+ EM G+ P+ TY +L+ A + D G
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 219 KMVDSGLRPNLAVYNRLVG 237
+ + G++PNL + + G
Sbjct: 779 QAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135
N+++D C GK +EALKLF+ MK P N+ +++++ DG C
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKP-----NVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 26/202 (12%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N++LD G+ + A F+ + + + S+N++ GY G+ A+E+F
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHEKD----------VVSWNILLTGYVAHGKGSMAVELF 577
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFE 206
+M E +PD ++F +L+ ++GM+ + E + M +K + P+ Y ++D
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 207 VNRVDDGATYFRKMVDSGLRPNLAVYNRL-----VGKLVQVGMLDEAKSFFDIMVKKLKM 261
++ + + KM + P+ AV+ L + + V++G L A+ F +L
Sbjct: 638 AGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGEL-AAQHIF-----ELDP 688
Query: 262 DDASYKFMMKAL-SDGGKLDEI 282
+ Y ++ L +D GK DE+
Sbjct: 689 NSVGYYILLCNLYADAGKWDEV 710
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 40/256 (15%)
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF---------DRMKNE 113
EE ++ YN V A N +L G+ + + L D K
Sbjct: 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIY 408
Query: 114 HNP-----PKRLAV-------------NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC 155
H K+ AV L +FN++ A+ V R + E
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468
Query: 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215
D + LI K+G + E++ EM + GV + +T+G L+D C +V
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM------VKKLKMDDASYKFM 269
+ M ++P+ V+N L+ Q G +D A FD++ + D + +
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGAL 585
Query: 270 MKALSDGGKLDEILEI 285
MKA ++ G++D E+
Sbjct: 586 MKACANAGQVDRAKEV 601
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 52/289 (17%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
+ GF D + + ++L V+ G RLF+E+ E+ + +G+++ G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER------NLASWGTIIGGLVDA 202
Query: 61 GMEEEAMECYNEAVGENS-----------------------------SVKMSAVANNSV- 90
G EA + E + S +K V + V
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 91 ---LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
+D G ++A +FD M P++ V ++N M GY G ++A+ ++
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGM------PEKTTV---AWNSMLAGYALHGYSEEALCLY 313
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
+M + S D +F+ +I + +L A++ + + G D L+D +
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256
R++D F +M R NL +N L+ G +A F+ M+
Sbjct: 374 GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 62/256 (24%), Positives = 106/256 (41%), Gaps = 21/256 (8%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GF D V + L+ +V+ GD +F+ + D + + +++ GYF G
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENGECL 270
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEAL--KLFDRMKNEHNPPKRLAV 122
E +E + SV + SV+ A E L + R + + AV
Sbjct: 271 EGLELFFTMREL--SVDPDLMTITSVISAC-------ELLGDERLGREMHGYVVKTGFAV 321
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ N + Y G + +A +VF +M E + D +S+ +I KNG+ +A E Y
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETK---DAVSWTAMISGYEKNGLPDKALETY 377
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M V+PDE T ++ AC + +D G GL + V N L+ +
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 243 GMLDEAKSFFDIMVKK 258
+D+A F + +K
Sbjct: 438 KCIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 32/224 (14%)
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHN--PPK 118
GM +A ++E N + +++ L + G + EA LF M + + P+
Sbjct: 172 GMLIDARRLFDEMPERN------LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 119 RLAVNLGSFNVMADGYCGQ---------GRFKDA------IEVFRKMG---EYRCSPD-- 158
V L + + GQ G D I+++ K G + RC D
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 159 ----TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214
T+++N+++ +G EA LY EM D GV+ D++T+ +++ + ++
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
++ +G ++ LV + G +++A++ FD M +K
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 8e-07
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
PD +++N LID LC+ G + EA EL EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 12/202 (5%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM 62
+KG P VY+ + + GD D +++++K+K GV D V + +L+ G
Sbjct: 610 IKGT---PEVYTIAVNSCSQKGDWDFALSIYDDMKKK--GVKPDEVFFSALVDVAGHAGD 664
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
++A E +A +K+ V+ +S++ A N + +AL+L++ +K+ +L
Sbjct: 665 LDKAFEILQDA--RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-----IKLRP 717
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
+ + N + C + A+EV +M P+T++++ L+ + +L
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 183 GEMSDKGVNPDEYTYGLLMDAC 204
+ + G+ P+ + C
Sbjct: 778 SQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 22/282 (7%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
GF D V + L+ ++ G ++F ++ K D V + +++ GY G+
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK------DAVSWTAMISGYEKNGLP 370
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
++A+E Y A+ E +V + SVL A G D +KL + + K L
Sbjct: 371 DKALETY--ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-----KGLISY 423
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ N + + Y A+EVF + E D +S+ ++I L N EA +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M + P+ T + AC + + G ++ +G+ + + N L+ V+ G
Sbjct: 480 QMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 244 MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285
++ A + F+ K D S+ ++ GK +E+
Sbjct: 539 RMNYAWNQFNSHEK----DVVSWNILLTGYVAHGKGSMAVEL 576
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 166 IDQLCKNGMLAEAEELYGEMSDKG--VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223
I++L G EA EL+ E+ + G TY L++AC + + + + S
Sbjct: 94 IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283
G P+ + NR++ V+ GML +A+ FD M ++ + AS+ ++ L D G E
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAF 209
Query: 284 EIVGGILDDGG 294
+ + +DG
Sbjct: 210 ALFREMWEDGS 220
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 7/158 (4%)
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N + Y G A VF +M D +S+N +I +NG E EL+ M +
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
V+PD T ++ AC + G +V +G +++V N L+ + +G E
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 248 AKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285
A+ F M K D S+ M+ G D+ LE
Sbjct: 342 AEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALET 376
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE 194
++N LID LCK G + EA EL+ EM ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 227 PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSD 275
P++ YN L+ + G ++EA F+ M K+ +K + +Y ++ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY 57
D V Y+ L+ G+ + G + +LF E+K++ G+ + Y L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKR--GIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101
G+ DG + +L+ Y G A +N S + V+ N +L +GK
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-------SHEKDVVSWNILLTGYVAHGKGS 571
Query: 102 EALKLFDRM-KNEHNPPKRLAVNLGSFNVMADGYCGQGR---FKDAIEVFRKM-GEYRCS 156
A++LF+RM ++ NP + ++L C R +E F M +Y +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISL---------LCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
P+ + ++D L + G L EA +M + PD +G L++AC
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159
++N + DG C GR ++A+E+F++M E PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN 233
PD TY L+D + +V++ F +M G++PN+ Y+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 8e-05
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMK 111
N+++D LC G+ DEA++L D M+
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 8e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
++N+LI CK G L EA EL+ EM +KGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 302 QEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGD 361
QE K E +K R E +E+++ + + AEA A + A AA + + +K
Sbjct: 443 QEKKKAEEAKA-RFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAA 501
Query: 362 KVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADA 404
+ A + +A +A +A K ++A+A
Sbjct: 502 ATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAAD 544
|
Length = 695 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 3e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
K L ++ ++N + DG C GR +A+E+ +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPP 117
N+++D LC G+ +EAL+LF MK P
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNE 113
NS++ C GK +EAL+LF MK +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 9e-04
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
Y+ G +EA+E Y +A+ + +A A ++ A GK++EAL+ +++ E +P
Sbjct: 10 YYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKAL-ELDP 65
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
N ++ + Y G++++A+E + K
Sbjct: 66 -----DNAKAYYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 4/139 (2%)
Query: 148 RKMGEYRCSPDTLSFNNL-IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206
R + S + +N + LC +G L +A +L M + V DE Y L C
Sbjct: 39 RGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW 98
Query: 207 VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASY 266
V++G+ + + S + + N ++ V+ G L A F M ++ D S+
Sbjct: 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER---DLFSW 155
Query: 267 KFMMKALSDGGKLDEILEI 285
++ + G DE L +
Sbjct: 156 NVLVGGYAKAGYFDEALCL 174
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228
TY L+D + RV++ F++M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 299 EELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIAS 353
EE E K E ++ REE +EREK + K RE E A+R+A+A+ +S
Sbjct: 582 EEAVEKAKREAEQKAREE--------REREKEKEKEREREREREAERAAKASSSS 628
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.4 bits (90), Expect = 0.002
Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 7/224 (3%)
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EA+E EA+ + ++ + AL G+ +EAL+L ++ P
Sbjct: 40 AEALELLEEALELLPNSDLAGLLLLL-ALALLKLGRLEEALELLEKALELELLPNLAE-- 96
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ + G++++A+E+ K PD + L + G EA ELY
Sbjct: 97 --ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYE 154
Query: 184 EM--SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
+ D +N L + R ++ K + + L ++
Sbjct: 155 KALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214
Query: 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285
+G +EA +++ ++ + + + L + G+ +E LE
Sbjct: 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
|
Length = 291 |
| >gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 289 ILDDGGIEFSEELQEFV-KGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSA 347
IL G+ + L V KG ++ E + E+KE + K + ++A +AAK++A
Sbjct: 73 ILSYEGVLLKKHLLGGVAKGAFTEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAA 132
Query: 348 RAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADANTT 407
A +K A+ +AA A A + EE A E+ + +A
Sbjct: 133 LEA----------EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAE 182
|
Length = 186 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRC 155
++N + GYC G+ ++A+E+F++M E
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (88), Expect = 0.004
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ G EEA+E Y +A+ + + A A ++ L G+++EAL+L ++ +
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
A + Y G++++A+E + K E + + NL L + G
Sbjct: 200 DDAEA-----LLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYE 253
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFE 206
EA E + + +PD Y GL +
Sbjct: 254 EALEALEKALEL--DPDLYNLGLALLLLLA 281
|
Length = 291 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 24/110 (21%), Positives = 44/110 (40%)
Query: 295 IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASL 354
E + ++ + E +++ + E + E+ + AE K + A A A A+
Sbjct: 108 KERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAA 167
Query: 355 IPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADA 404
K ++ A A AA+ +A+A + E+A A A A A
Sbjct: 168 EAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKA 217
|
Length = 387 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.77 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.65 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.62 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.54 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.52 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.5 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.47 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.33 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.2 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.92 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.92 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.9 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.87 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.86 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.54 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.49 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.46 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.26 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.25 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.25 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.24 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.22 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.22 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.17 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.06 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.99 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.92 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.83 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.49 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.43 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.42 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.33 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.32 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.05 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.94 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.83 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.73 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.43 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.37 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.15 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.95 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.77 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.73 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.86 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.83 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.7 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.53 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.53 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.39 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.29 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.19 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.04 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.91 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 93.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.51 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.47 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.21 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 93.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.0 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.81 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.59 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.57 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.39 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.96 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.84 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.79 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.63 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.59 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 91.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.21 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.14 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.06 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.99 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.64 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.59 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.17 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 89.05 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.9 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.83 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.73 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 88.7 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.69 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 88.67 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.59 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.46 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.18 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.07 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 87.86 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.86 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.82 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.34 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.94 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.83 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.56 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 86.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.3 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.91 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.91 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.75 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.23 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.78 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 84.69 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.07 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.72 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 82.37 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.3 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.28 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.27 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.97 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 81.93 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 81.7 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 81.67 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.66 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.22 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.65 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.61 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 80.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.15 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=391.49 Aligned_cols=326 Identities=20% Similarity=0.328 Sum_probs=309.4
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+. |+.||..+|+.++.+|++.|++++|.++|+.|...+ +
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v 538 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--V 538 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--C
Confidence 567899999999999999999999999999999999998 999999999999999999999999999999999988 8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKN--EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
.||..+|+.++.+|++.|++++|.++|++|.. .+..| +..+|+.++.+|++.|++++|.++|+.|.+.|++|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-----D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-----DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999986 45555 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (407)
..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.|+.+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
|++.|++++|.++|+.|.. +..|+..+|+.++.+|++.|++++|.++|++|... |+.|+..+|..++.+|.+.|++++
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987 78999999999999999999999999999999886 689999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 015416 318 VVKLMEKKEREKAEAKARE 336 (407)
Q Consensus 318 A~~~~~~~~~~~~~~~~~~ 336 (407)
|.+++++|.+.+.......
T Consensus 773 A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHH
Confidence 9999999998876655433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=385.14 Aligned_cols=316 Identities=18% Similarity=0.311 Sum_probs=306.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
||..+|+.+|.+|++.|+++.|.++|+.|.+. |..||..+|+.|+.+|++.|+++.|.++|++|...+ +.||..+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~--Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTy 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA--GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHH
Confidence 99999999999999999999999999999998 999999999999999999999999999999999988 89999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE--YRCSPDTLSFNNL 165 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l 165 (407)
+.++.+|++.|++++|.++|++|.+.+..| |..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999999999888 888999999999999999999999999976 6789999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
++|.++|+.|.+ +.+|+..+|+.++.+|++.|++++|.++|++|... ++.|+..+|+.++.+|++.|++++|.+++++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 88999999999999999999999999999999886 6899999999999999999999999999999
Q ss_pred HHHhhHHHH
Q 015416 325 KEREKAEAK 333 (407)
Q Consensus 325 ~~~~~~~~~ 333 (407)
|...+..+.
T Consensus 745 M~~~Gi~Pd 753 (1060)
T PLN03218 745 MKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCC
Confidence 988775544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=372.98 Aligned_cols=361 Identities=20% Similarity=0.267 Sum_probs=309.2
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS-- 78 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 78 (407)
|.+.|+.||..+|+.|+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 45678999999999999999999999999999988854 5888999999999999999999999999877651
Q ss_pred -------------------------------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 79 -------------------------------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 79 -------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
++.||..+|+.|+.+|++.|++++|.++|+.|... +..+|
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---------~~vt~ 293 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---------TTVAW 293 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---------ChhHH
Confidence 13445566677888888888888888888887542 67789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
+.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
|++++|.++|++|. .||..+|+.|+.+|++.|+.++|.++|++|.. +..||..||..++.+|.+.|++++|.++|
T Consensus 374 G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999885 36888999999999999999999999999988 89999999999999999999999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHH
Q 015416 287 GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK----------------AEAKAREAEAAEAAKRSARAA 350 (407)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 350 (407)
+.|.+.+++.|+..+|..++++|.+.|++++|.+++++|.... ....++...+......|.+..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 9999888899999999999999999999999999999885322 122333333334445565666
Q ss_pred HHhhcCCCcCCCccccccccccChhhHhhHHHHhcCccc
Q 015416 351 IASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEV 389 (407)
Q Consensus 351 ~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~ 389 (407)
.|..|.+.|...+ +|++|.++++....+-.
T Consensus 530 ~y~~L~~~y~~~G---------~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 530 NYVVLLNLYNSSG---------RQAEAAKVVETLKRKGL 559 (697)
T ss_pred chHHHHHHHHhCC---------CHHHHHHHHHHHHHcCC
Confidence 7778888888888 99999999998876654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=374.39 Aligned_cols=368 Identities=19% Similarity=0.211 Sum_probs=261.0
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|++.|+.||..||+.++.+|++.|+++.|.+++..|.+. |..||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------ 350 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------ 350 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC------
Confidence 445566666666666666666666666666666666665 666666666666666666666666666666553
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------------------------------ccccchHHHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL------------------------------AVNLGSFNVM 130 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~l 130 (407)
.||..+|+.++.+|.+.|++++|.++|++|.+.+..|+.. .++..+++.|
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 2345556666666666666666666666665555554211 1144555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 6666666666666666665543 4555666666666666666666666666654 3677777777666666655555
Q ss_pred HHHHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC
Q 015416 211 DDGATYFRKMVDSGL------------------------------RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KL 259 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 259 (407)
+.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|.+ +.
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555555555544443 46777899999999999999999999999998 89
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----------
Q 015416 260 KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK---------- 329 (407)
Q Consensus 260 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 329 (407)
.||..||..++.+|.+.|++++|.++|+.|.+.+|+.|+..+|..++.+|.+.|++++|.+++++|+-..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999778999999999999999999999999999999985221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccc
Q 015416 330 ------AEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 330 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
....++...+......|.....+..|+++|...+ +|++|.++++...++...
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g---------~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG---------KWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC---------ChHHHHHHHHHHHHcCCC
Confidence 1123334444556678888899999999999999 999999999888766443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=357.30 Aligned_cols=308 Identities=18% Similarity=0.279 Sum_probs=292.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
++.||..+|+.++.+|.+.++++.+.+++..|.+. |+.||..+|+.|+.+|++.|+++.|.++|++|. .||.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~~~ 189 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP------ERNL 189 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC------CCCe
Confidence 47899999999999999999999999999999998 999999999999999999999999999999995 4678
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------------------------------cccccchHHHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR------------------------------LAVNLGSFNVMADGY 134 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~ 134 (407)
.+|+.++.+|++.|++++|.++|++|.+.|+.|+. +.++..+++.|+.+|
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y 269 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHH
Confidence 99999999999999999999999999998877752 234777899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 270 ~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999964 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 294 (407)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++|+++|++|.+. |
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g 421 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-G 421 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999999999999999864 79999999999999999999999999999986 7
Q ss_pred CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 295 IEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+.|+..+|..++.+|.+.|..++|.++|+.|.+.
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=351.49 Aligned_cols=306 Identities=22% Similarity=0.296 Sum_probs=200.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+.|+.||..+||+||.+|++.|+++.|..+|+.|.. ||..+|+.++.+|++.|++++|+++|.+|...+ +.|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~P 286 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELS--VDP 286 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC
Confidence 445556666666666666666666666666666643 356666666666666666666666666666665 566
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
|..+|+.++.+|.+.|+.+.|.+++..+.+.|..| +..+|+.|+.+|++.|++++|.++|++|.. ||..+|
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~ 357 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAV-----DVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSW 357 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-----chHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeH
Confidence 66666666666666666666666666666666555 666666666666666666666666666643 566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHH-------------------------------hcCC-------------------------------
Q 015416 243 GMLDEAKSFFDIMV-------------------------------KKLK------------------------------- 260 (407)
Q Consensus 243 g~~~~A~~~~~~~~-------------------------------~~~~------------------------------- 260 (407)
|++++|.++|++|. .+.+
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 66666655555443 2223
Q ss_pred ----------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 261 ----------------------------------MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 261 ----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+|..+|+.++.+|++.|+.++|+++|++|.+. |+.|+..+|..++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHH
Confidence 34445666666666677777777777777654 5677777777777
Q ss_pred HHHhhcCcHHHHHHHHHHHH
Q 015416 307 GELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+|.+.|++++|.++|+.|.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHhhcChHHHHHHHHHHHH
Confidence 77777777777777777776
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-24 Score=213.60 Aligned_cols=348 Identities=14% Similarity=0.087 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
..++..+...+.+.|++++|..+++++... .+.+...+..++..+...|++++|+.+++.+.... +.+...|..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 606 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA---PDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHH
Confidence 334444444444445555555555444442 22334444445555555555555555555554433 334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++.+|...|++++|...|+++.+..+. +...+..++.+|.+.|++++|..+|+++.+.. +.+..++..++..+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 555555555555555555555544322 33345555555555566666666665555543 33445555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
...|++++|..+++.+.+.+ +++...+..++..+...|++++|...|+.+... .|+..++..++.++...|++++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHH
Confidence 55566666666555555442 334455555566666666666666666666553 233355555666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh-
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE- 328 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 328 (407)
..++.+.+..|.+..++..++..|...|++++|..+|+++.+.+ +.+...+..++..+.+.|+ ++|+..++++...
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 66666666555566666666666666666666666666666542 4455556666666666666 5566666555321
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhc
Q 015416 329 -----------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQA 385 (407)
Q Consensus 329 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~ 385 (407)
+....+....+......|....++..++..+...| ++++|+.+.+.+.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG---------RKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---------CHHHHHHHHHHHh
Confidence 12223333333344444445555555555555555 6777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=190.79 Aligned_cols=358 Identities=16% Similarity=0.155 Sum_probs=287.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
-..+|..+...+...|+++.|+.+|+.+++. -+.....|..+..++...|+.+.|.+.|..+++.+|. ......
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhhc
Confidence 3567888999999999999999999999995 3457889999999999999999999999999987632 333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+...+...|+..+|...|.+.++..+. -..+|..|...+..+|+...|+..|++..+.+ |.=...|-.|+..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~------fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPC------FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNV 261 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCc------eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHH
Confidence 5666667788889999988888876543 45578888888888899999999888888865 2235678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 246 (407)
|...+.++.|+..|.++... .|+ ...+..+...|...|.++-|+..|++.++ +.|+ ...|+.|..++-..|+..
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchH
Confidence 88888888888888888763 444 66788888888888888888888888887 3555 348888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|.+.+.+.+...+....+.+.|...|...|.+++|..+|...++-+ +--...++.|+..|..+|++++|+..+++..
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 88888888888777778888888888888888888888888888752 4445577788888888888888888888776
Q ss_pred H------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 327 R------------------EKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 327 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
+ .+....+......+.+..|.-+...++|+++|++.| +..+||+..+.+...+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG---------ni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG---------NIPEAIQSYRTALKLK 486 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC---------CcHHHHHHHHHHHccC
Confidence 3 333344445555567778888999999999999999 9999999999998888
Q ss_pred cchhhh
Q 015416 389 VNLEEA 394 (407)
Q Consensus 389 ~~~~~~ 394 (407)
.+.-+|
T Consensus 487 PDfpdA 492 (966)
T KOG4626|consen 487 PDFPDA 492 (966)
T ss_pred CCCchh
Confidence 776555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-23 Score=211.27 Aligned_cols=296 Identities=15% Similarity=0.136 Sum_probs=154.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+.+.|++++|..+++.+... .++++.+|..++.++...|++++|...|+++.+.+ +.+...+..++..
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~ 508 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKK---QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE---PDFFPAAANLARI 508 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHH
Confidence 33444455555555555555555442 34455555566666666666666666666655544 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|++++|.+.|+++....+. +..++..++..+.+.|++++|..+|+++...+ +.+...+..++..|...|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK------NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 55556666666666555554332 33445555555555555555555555554433 334444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++++|..+++.+.+. .+.+...|..++.+|...|++++|...|+++.+.. +.+...+..++..+...|++++|..+|+
T Consensus 582 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443 13344455555555555555555555555555432 2234445555555555555555555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
++....|.+..++..++..+...|++++|.++++.+.... +.+...+..++..+.+.|++++|...++++.
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555444445555555555555555555555555554432 3344444445555555555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=183.01 Aligned_cols=302 Identities=15% Similarity=0.108 Sum_probs=247.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chhhHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAVANNSVLDA 93 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 93 (407)
....+...|++++|+..|.++.+. .+.+..++..++..+...|++++|+.+++.+....+ ..+ ....+..++..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHH
Confidence 344567889999999999999985 345777899999999999999999999999987531 111 13567888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD----TLSFNNLIDQL 169 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~ 169 (407)
|...|+++.|..+|.++.+..+. +..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..++..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999876432 566899999999999999999999999988653222 12456778888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
...|++++|..+|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 33466788899999999999999999999997532222457889999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh---cCcHHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK---EGREEEVVKLMEKKE 326 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 326 (407)
..++++... .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.
T Consensus 270 ~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 270 EFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999885 355566788999999999999999999999886 5777777766665553 569999999999998
Q ss_pred HhhHHH
Q 015416 327 REKAEA 332 (407)
Q Consensus 327 ~~~~~~ 332 (407)
+.....
T Consensus 346 ~~~~~~ 351 (389)
T PRK11788 346 GEQLKR 351 (389)
T ss_pred HHHHhC
Confidence 877553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-22 Score=190.15 Aligned_cols=299 Identities=12% Similarity=0.072 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+.+.|++++|..+++..... .+-+...+..++.++...|+++.|+..|+++...+ |.+...+..+..+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~~ 119 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 34566677888888888888888885 45567777788888888888888888888888876 4466778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|++++|...|+++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~------~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG------NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcC
Confidence 88888888888888888876544 55678888888888888888888888876654 2333344333 3477788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE----AK 249 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~ 249 (407)
++++|...++.+.+....++...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 888888888888765333344455556677888888888888888888753 4456677888888888888875 78
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..|+++....|.+..++..++..+...|++++|+..+++++... +.+...+..++.+|.+.|++++|...++++....
T Consensus 271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888888777778888888888888888888888888888763 5556677778888888888888888888877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-21 Score=184.91 Aligned_cols=361 Identities=13% Similarity=0.042 Sum_probs=279.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|+..++.+++.+ +.+..+|..+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC----KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHH
Confidence 3556778899999999999999999874 4678889999999999999999999999999987 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------ccccccchHHHHHH---------------
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPK------------------------RLAVNLGSFNVMAD--------------- 132 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~--------------- 132 (407)
.+|...|++++|+..|..+........ ....+...+..+..
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999999877655432211000 00000001111100
Q ss_pred ---------------HH------HhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 133 ---------------GY------CGQGRFKDAIEVFRKMGEYR--CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 133 ---------------~~------~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 189 (407)
.+ ...+++++|++.|+.....+ .+.....|+.++..+...|++++|+..|++.++.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 00 12367889999999998764 2334567888899999999999999999999885
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 190 VNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 190 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
.|+ ...|..+...+...|++++|...|+++++.. +.+..+|..++..+...|++++|...|++.+...|.+...+..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 454 6688889999999999999999999998853 4467799999999999999999999999999988888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH------------------
Q 015416 269 MMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA------------------ 330 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 330 (407)
++.++.+.|++++|+..|++++..+ +.+...+..++.++...|++++|++.+++.....+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 9999999999999999999999863 66678899999999999999999999998765321
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhh
Q 015416 331 -------EAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEE 393 (407)
Q Consensus 331 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~ 393 (407)
...+....+......|.....+..++.++...+ ++++|+...++.........+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g---------~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG---------DVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHhccHHH
Confidence 112222333333344555555666777777777 899999998888776554333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-21 Score=181.72 Aligned_cols=314 Identities=13% Similarity=0.091 Sum_probs=260.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..++..+...|+++.|+..|+++... .|.+...+..++..+...|++++|+..|++++... +.+...+.
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~---P~~~~a~~ 148 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF---SGNSQIFA 148 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 3445566677778899999999999999996 45578889999999999999999999999999876 45678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.++...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+......++...+..++.+
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~------~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPR------GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCC------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 99999999999999999999988776543 2234333 3478899999999999998876533445555666788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD----GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+++.+.. +.+..++..++..+...|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999864 3457788889999999999986 899999999853 4456799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
+++|...++++....|.+...+..+..++...|++++|+..|+++.... +.....+..++.++...|+.++|...+++
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999778888899999999999999999999999999863 33334455567889999999999999999
Q ss_pred HHHhhHHHHHHHHHH
Q 015416 325 KEREKAEAKAREAEA 339 (407)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (407)
..+..+......+.+
T Consensus 378 al~~~P~~~~~~~~e 392 (656)
T PRK15174 378 YIQARASHLPQSFEE 392 (656)
T ss_pred HHHhChhhchhhHHH
Confidence 988766655444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=176.12 Aligned_cols=282 Identities=14% Similarity=0.167 Sum_probs=231.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS---DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
.+..++..+...+...|++++|..+++.+... +..+ ....+..++..|...|++++|+.+|+++.+.. +.+.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~---~~~~ 141 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG---DFAE 141 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC---cchH
Confidence 35567899999999999999999999999874 2111 12567889999999999999999999999865 5577
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.++..++.++.+.|++++|.+.++.+.+.++.+... .....+..++..+.+.|++++|..+|+++.+.. +.+...+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 219 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHH
Confidence 889999999999999999999999999876543210 012245678888999999999999999998864 445678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|+
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999997532222567888999999999999999999999985 5666777899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSD---GGKLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
+++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+. ++.|++.
T Consensus 298 ~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 99999999999885 5677788877777664 56899999999999875 2445444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-19 Score=169.44 Aligned_cols=276 Identities=16% Similarity=0.095 Sum_probs=144.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS------ 79 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 79 (407)
+.|+...|..+..+|.+.|++++|++.++...+. .|.+...|..+..+|...|++++|+..|..+...++.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 5678888888999999999999999999998885 3446678888888888889988887655433211100
Q ss_pred ---------------------CCCchhhHHHHHH------------------------------HH------HhcCCHHH
Q 015416 80 ---------------------VKMSAVANNSVLD------------------------------AL------CNNGKFDE 102 (407)
Q Consensus 80 ---------------------~~~~~~~~~~l~~------------------------------~~------~~~~~~~~ 102 (407)
.+++...+..+.. .+ ...+++++
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence 0000000000000 00 01134555
Q ss_pred HHHHHHHHHhcCC-CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 103 ALKLFDRMKNEHN-PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 103 A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
|.+.|+.+.+.+. .|. ....+..+..++...|++++|+..|++.+... +.....|..+...+...|++++|+..
T Consensus 313 A~~~~~~al~~~~~~~~----~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 313 AARAFEKALDLGKLGEK----EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHhcCCCChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555554431 111 23344455555555555555555555554432 22233444555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|+++++.. +.+...|..+...+...|++++|...|++.++.. +.+...+..++.++.+.|++++|+..|++.....|.
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 55554431 1224444455555555555555555555555432 223334444555555555555555555555544444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
++..+..++.++...|++++|++.|++++.
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 444555555555555555555555554444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=166.55 Aligned_cols=289 Identities=17% Similarity=0.162 Sum_probs=221.2
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++.+|...|.+.++. .+-=...|+.|+..+...|+...|++.|+++++.+|.+ ..+|..|...|...+.++.
T Consensus 197 ~Grl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f---~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF---LDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc---hHHHhhHHHHHHHHhcchH
Confidence 45555555555555443 12234567777777778888888888888888877543 4577788888888888888
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 182 (407)
|+..|.+.....+. ...++..+...|..+|+++-|+..|++.++.. |.=...|+.|..++-..|+..+|+..|
T Consensus 271 Avs~Y~rAl~lrpn------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred HHHHHHHHHhcCCc------chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 88888887766544 55677777788888888888888888888764 223568888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL-AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 183 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
.+.+... +......+.|...|...|.++.|..+|....+ +.|.. ..++.|...|-++|++++|+..+++.+...|.
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 8888742 22366788888888888888888888888887 44554 47888888889999999999999888886555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
-..+|..++..|...|+++.|++.+.+++..+ |.-.+.+..|+..|...|+..+|+.-++...+.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 67788889999999999999999998888753 4455688888888989999999998888877443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-19 Score=178.22 Aligned_cols=306 Identities=12% Similarity=0.054 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVY------------GSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+...+..|...|.+.|++++|+..|++..+..+... ....| ......+.+.|++++|+..|++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 556666777777777777777777777766422111 11111 12244556677777777777777766
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH----------------------------
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN---------------------------- 128 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 128 (407)
. +.+...+..+..++...|++++|++.|+++.+..+.. ..++.
T Consensus 381 ~---P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~------~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 381 D---NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN------TNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 5 3355666677777777888888888888777665431 11222
Q ss_pred --------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 015416 129 --------------VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE 194 (407)
Q Consensus 129 --------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 194 (407)
.+...+...|++++|++.|++.++.. |.+...+..+...|.+.|++++|...++++.+.. +.+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 22334445667777777777766654 3345556666667777777777777777766532 1123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDS---------------------------------------GLRPNLAVYNRL 235 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l 235 (407)
..+..+...+...++.++|...++.+... ..+.+...+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 22322222333334444433333322100 012334455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
...+...|++++|+..|+++....|.+...+..++.+|...|++++|++.++.+.... +.+...+..++.++...|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHhCCCH
Confidence 6666677777777777777776666666677777777777777777777777666542 33444555566666677777
Q ss_pred HHHHHHHHHHHHh
Q 015416 316 EEVVKLMEKKERE 328 (407)
Q Consensus 316 ~~A~~~~~~~~~~ 328 (407)
++|.++++++...
T Consensus 688 ~eA~~~~~~al~~ 700 (1157)
T PRK11447 688 AAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-18 Score=176.73 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=222.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH--------
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN-------- 87 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------- 87 (407)
....+...|++++|+..|++..+. .|.+..++..++.++.+.|++++|+..|+++++.+|... ....|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhh
Confidence 356677899999999999999985 445788999999999999999999999999998775322 21112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 ----NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
......+.+.|++++|+..|+++++..+. +...+..+..++...|++++|++.|+++++.. +.+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNT------DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22355678999999999999999988654 56678889999999999999999999998764 33333333
Q ss_pred HH------------------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 164 NL------------------------------------------IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 164 ~l------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.+ ...+...|++++|+..|+++++.. +-+...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22 334456788888888888888743 22466777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------------
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK------------------------ 257 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 257 (407)
..|...|++++|...++++.+.. +.+...+..+...+...+++++|...++.+..
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88999999999999999888642 22444444444444445555555444433210
Q ss_pred ----------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 258 ----------------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 258 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
..|.++..+..+...+.+.|++++|+..|++++... |.+...+..++.+|...|++++|.+.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 245566677788888888899999999999888863 56677888888888889999999988
Q ss_pred HHHHHHh
Q 015416 322 MEKKERE 328 (407)
Q Consensus 322 ~~~~~~~ 328 (407)
++++...
T Consensus 660 l~~ll~~ 666 (1157)
T PRK11447 660 LAKLPAT 666 (1157)
T ss_pred HHHHhcc
Confidence 8877643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-18 Score=165.36 Aligned_cols=340 Identities=9% Similarity=0.017 Sum_probs=217.9
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..+...+.+.|++++|..+|++..+. .|.+...+..++.++...|++++|+..++++++.. |.+.. +
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~---P~~~~-~ 119 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA---PDKAN-L 119 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH-H
Confidence 34456888888999999999999999998885 45567778888889999999999999999998876 44566 8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh---------------
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE--------------- 152 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 152 (407)
..+..++...|+.++|+..++++.+..+. +...+..+..++...|..+.|+..++....
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~ 193 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQ------TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAE 193 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999999987665 445556667777776776666555543222
Q ss_pred -------------------------------C-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH
Q 015416 153 -------------------------------Y-RCSPDTL-SF----NNLIDQLCKNGMLAEAEELYGEMSDKGVN-PDE 194 (407)
Q Consensus 153 -------------------------------~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~ 194 (407)
. ...|+.. .+ ...+.++...|++++|+..|+++.+.+.+ |+.
T Consensus 194 ~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 194 LVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 1 0011110 00 01122334556777777777776665321 221
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM---------- 261 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------- 261 (407)
....+..+|...|++++|+.+|+++.+..... .......|..++...|++++|..+++.+....|+
T Consensus 274 -a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 274 -AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 22224556677777777777777766432110 1234555555666777777777777776664331
Q ss_pred --C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHH
Q 015416 262 --D---DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKARE 336 (407)
Q Consensus 262 --~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 336 (407)
+ ...+..++..+...|++++|+++++++.... |.+...+..++..+...|++++|++.+++.....
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------- 423 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE------- 423 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------
Confidence 1 1234556666667777777777777776652 5555666667777777777777777777665544
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 337 AEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
|........++..+...+ ++.+|.++.+.+..+.
T Consensus 424 ---------Pd~~~l~~~~a~~al~~~---------~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 424 ---------PRNINLEVEQAWTALDLQ---------EWRQMDVLTDDVVARE 457 (765)
T ss_pred ---------CCChHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHhC
Confidence 444444444444444555 6667776666665543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-16 Score=153.81 Aligned_cols=318 Identities=12% Similarity=0.006 Sum_probs=240.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...+..++..+...|++++|+..++++.+. .|.+.. +..+..++...|++++|+..++++++.. |.+...
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---P~~~~~ 152 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---PQTQQY 152 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 345666788889999999999999999999985 445666 9899999999999999999999999987 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH----------------------------------------------HHHhcC-CCCCc
Q 015416 87 NNSVLDALCNNGKFDEALKLFD----------------------------------------------RMKNEH-NPPKR 119 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~----------------------------------------------~~~~~~-~~~~~ 119 (407)
+..+..++...+..+.|+..++ .+.+.. ..|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 6667777766666665554444 333221 11110
Q ss_pred cccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHH
Q 015416 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP---DEY 195 (407)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~ 195 (407)
...........+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 0000001111133456779999999999999987522 222 22335788999999999999999987643111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGL-----------RPN---LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
....+..++...|++++|..+++.+..... .|+ ...+..++..+...|++++|+.+++++....|.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 566677788999999999999999987421 123 235667888999999999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 334 (407)
+...+..++..+...|++++|++.+++++... |.+...+...+..+.+.|++++|..+++++.+..+....
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999974 555677888888999999999999999999877655443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-16 Score=138.75 Aligned_cols=282 Identities=11% Similarity=0.095 Sum_probs=222.5
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh--hHHHHHHHHHhcCC
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSL-MKGYFMKGMEEEAMECYNEAVGENSSVKMSAV--ANNSVLDALCNNGK 99 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 99 (407)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|..+|.++.+.. |+.. ........+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHCCC
Confidence 59999999888776553 2233444444 455589999999999999998754 3332 22234678899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHc
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-------SFNNLIDQLCKN 172 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 172 (407)
++.|...++++.+..|. ++.+...+...|.+.|++++|.+++..+.+.+..++.. +|..++......
T Consensus 169 ~~~Al~~l~~~~~~~P~------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988765 67789999999999999999999999999876443221 233333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
.+.+...++++.+-+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 5566666777766443 3457888899999999999999999999999883 5555332 233334569999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+...+..|.|+..+..+++.|.+.|++++|.+.|+.+.+. .|+...+..++.++.+.|+.++|...+++-.
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988999999999999999999999999999999985 7999999999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=148.87 Aligned_cols=306 Identities=10% Similarity=-0.004 Sum_probs=234.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---HHHHHHH----------------
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---EEEAMEC---------------- 69 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~---------------- 69 (407)
+....-.+--...+.|+.++|.++|++.....+....+......++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 334444445556788999999999999887322233344455577777777665 3333222
Q ss_pred ------HHHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH
Q 015416 70 ------YNEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK 141 (407)
Q Consensus 70 ------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 141 (407)
++.....-+..++ +...|..+..++.. +++++|+..+.+.....+. ......+...+...|+++
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-------~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-------AWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHCCCHH
Confidence 2222222122245 67788888888877 8999999989888876532 223444455567899999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
+|...|+++... +|+...+..++.++.+.|++++|..++++.++.. ++....+..+...+...|++++|...+++.+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998664 4566667788889999999999999999998854 2233344444455556799999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+. .|+...+..++.++.+.|++++|...|++.....|.+...+..+..++...|++++|+.+|+++++.. |-+...
T Consensus 604 ~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a 679 (987)
T PRK09782 604 NI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPAL 679 (987)
T ss_pred Hh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 84 57788999999999999999999999999999888899999999999999999999999999999974 667788
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+..++.++...|++++|+..+++..+..
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-17 Score=144.45 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=240.0
Q ss_pred ChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015416 25 DSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEAL 104 (407)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 104 (407)
+..+|+.+|..+... +..+..+...++.+|...+++++|..+|+.+....|-.-.+..+|.+.+-.+-+ +-++
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 568899999996664 444556777899999999999999999999998876656678888888754422 2233
Q ss_pred HHHH-HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 105 KLFD-RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
..+. .+....+. .+.+|.+++.+|.-+++++.|++.|++.++.+ +....+|+.++.-+.....+|.|...|+
T Consensus 407 s~Laq~Li~~~~~------sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 407 SYLAQDLIDTDPN------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHHhhCCC------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 3333 34443332 66799999999999999999999999999976 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 015416 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD 263 (407)
Q Consensus 184 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (407)
.++.... -+-..|.-++..|.+.++++.|+-.|+++.+-+ +.+.+....++..+.+.|+.++|+.+++++....+.++
T Consensus 480 ~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 480 KALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9987421 135567778899999999999999999999854 44667888899999999999999999999999888899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 264 ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
-.-...+..+...+++++|+..++++.+. +|.+..+|..++..|.+.|+.+.|+.-|--+.+..++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999986 5677779999999999999999999988888765544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=149.06 Aligned_cols=262 Identities=18% Similarity=0.207 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
.+...+.+.|++++|++++........ .+.+...|..+...+...++++.|...++++...+.. +...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------NPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc------ccccccccc
Confidence 456777777778888777755433320 0234455555666666777778888888777765433 344566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~ 210 (407)
.. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 57777788877776665432 555666677777777788888888877766432 344566777777777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
++|++.++++++.. +.|......++..+...|+.+++..++.......+.++..+..++.+|...|+.++|+.+|++..
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 88888888887742 22466777777778888888887777777777556666777778888888888888888888877
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
..+ +.++.....++.++...|+.++|..+.+++.
T Consensus 242 ~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN--PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS--TT-HHHHHHHHHHHT----------------
T ss_pred ccc--ccccccccccccccccccccccccccccccc
Confidence 753 5677777778888888888888887777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=148.22 Aligned_cols=280 Identities=12% Similarity=0.041 Sum_probs=222.6
Q ss_pred HHHHHHHHHhhCCccC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015416 30 FRLFEELKEKLGGVVS--DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107 (407)
Q Consensus 30 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (407)
...++......+..++ +...|..++.++.. +++++|+..|.+..... |+......+...+...|++++|...|
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444443333455 77888999988887 89999999999988765 34444445566667899999999999
Q ss_pred HHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
+++....+ ....+..++.++.+.|++++|...|++.++.. +++...+..+.......|++++|...|++.++
T Consensus 533 rka~~~~p-------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 533 QKISLHDM-------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHhccCC-------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99865422 22346677888999999999999999998875 34444444445555567999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYK 267 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 267 (407)
. .|+...+..+..++.+.|++++|+..|++..... +.+...++.+..++...|++++|+..|++..+..|.++..+.
T Consensus 605 l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 605 I--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred h--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 5678899999999999999999999999999864 446678899999999999999999999999998888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.+..++...|++++|+..|+++++.. +-...+.........+..+++.|.+-+++...
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999863 44445666667777777777777777666543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-15 Score=141.43 Aligned_cols=330 Identities=13% Similarity=0.069 Sum_probs=189.9
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
..+.|+++.|++.|+++.+..| -+......++..+...|+.++|+.+++++.... +........++..|...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P---~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGP---LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCc---cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3466666677777766666411 121111255566666666666666666665211 2223333333455666666
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 179 (407)
+++|+++|+++.+..+. ++..+..++..|...++.++|++.++++.... |+...+..++..+...++..+|+
T Consensus 118 yd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 118 WDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHH
Confidence 66666666666665544 34445555566666666666666666665542 34333333333332333443455
Q ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Q 015416 180 ELYGEMSDKGV--------------------------------------------------------------------- 190 (407)
Q Consensus 180 ~~~~~~~~~~~--------------------------------------------------------------------- 190 (407)
..++++.+...
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 55555444210
Q ss_pred --------------CCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 191 --------------NPDE-----YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 191 --------------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.|.. ....-.+-++...|++.++++.|+.+...+.+....+-..++.+|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 0110 011122334455677777777777777666544455777788888888888888888
Q ss_pred HHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------CCCcH---HHHHHHHHHHhhc
Q 015416 252 FDIMVKKL------KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG----------IEFSE---ELQEFVKGELSKE 312 (407)
Q Consensus 252 ~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~ 312 (407)
|..+.... +++......|.-+|...+++++|..+++++.+... ..|++ ..+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 88886622 22344457788888888888888888888877321 01222 2444567778888
Q ss_pred CcHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCc
Q 015416 313 GREEEVVKLMEKKERE------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKV 363 (407)
Q Consensus 313 g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 363 (407)
|+..+|++.++++... +....++.........+|....+.+..+..+...+
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 8888888888888632 22334444445555556666666666666655555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-15 Score=135.78 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=218.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcc-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGV-VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
...|+++.|.+.+....+. .|++. .+-....+..+.|+++.|.++|.++.+..| .+...........+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p--~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG--NDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--cCchHHHHHHHHHHHHCCC
Confidence 3579999999999887764 34443 344557788889999999999999987542 1122344445788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HHcCCH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN-NLIDQL---CKNGML 175 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~ 175 (407)
++.|...++.+.+..|. +..++..+...|...|+++.|.+.+..+.+.+.. +...+. ....++ ...+..
T Consensus 169 ~~~Al~~l~~l~~~~P~------~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPR------HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 6678999999999999999999999999998743 333332 111222 333333
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHH
Q 015416 176 AEAEELYGEMSDKGV---NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV---YNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~ 249 (407)
+++...+..+.+... +.+...+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHH
Confidence 444445555554321 2378889999999999999999999999999853 33331 122222234457889999
Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDD--ASYKFMMKALSDGGKLDEILEIVGG--ILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 250 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+.++...+..|.++ ....+++..|.+.|++++|.+.|+. ..+ ..|+...+..++..+.+.|+.++|.+++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998777788 7888999999999999999999995 544 3788888889999999999999999999875
Q ss_pred H
Q 015416 326 E 326 (407)
Q Consensus 326 ~ 326 (407)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=147.57 Aligned_cols=267 Identities=17% Similarity=0.221 Sum_probs=117.1
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCC-ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGG-VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
|+...+ .+...+.+.|++++|+++++..... . .+.++..|..+...+...++++.|+..++++...++ -+...
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~--~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~ 80 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQK--IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc---ccccc
Confidence 333334 5688889999999999999765553 2 244667777888888899999999999999998763 35666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNL 165 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 165 (407)
+..++.. ...+++++|.+++....+... +...+..++..+.+.++++++..+++.+.... .+++...|..+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDG-------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccc-------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 7777777 789999999999988765542 44467778889999999999999999977533 34677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+..+.+.|++++|+..|++.++. .| +......++..+...|+.+++.++++...+.. +.+...+..++.+|...|+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc
Confidence 99999999999999999999985 45 47788889999999999999999999888653 4566688899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++|..+|++.....|.|+.....++.++...|+.++|.++.+++..
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998888999999999999999999999999988765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-15 Score=125.25 Aligned_cols=297 Identities=12% Similarity=0.075 Sum_probs=232.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
..++....+.+++..-.+..... |.+.+...-+..+.+.....+++.|+.+|+++.+.+|---.|..+|..++ |.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 34555666777888878777776 77777777777777778889999999999999988765445677887777 444
Q ss_pred cCCHHHHHHHHHHHH-hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 97 NGKFDEALKLFDRMK-NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..+-. +..+.+-. ..+ .+ -+.|+..+++-|.-.++.++|..+|++.++.+ |.....|+.++.-|....+.
T Consensus 310 ~~~sk--Ls~LA~~v~~id----Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNID----KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred hhhHH--HHHHHHHHHHhc----cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhccc
Confidence 43322 22222111 110 01 34478888999999999999999999999986 45667899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
..|++-|+.+++.. +-|-..|..++++|.-.+...-|+-+|++..+.. +-|...|.+|+.+|.+.++.++|++.|.+.
T Consensus 381 ~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999863 4578899999999999999999999999999853 447789999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C-CCC-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG---G-IEF-SEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
......+...+..++..|-+.++.++|...|.+.++.. | +.+ .......|+.-+.+.+++++|.........-
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 98656677899999999999999999999998877631 2 233 3445666888888999999999877776644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=122.18 Aligned_cols=304 Identities=12% Similarity=0.060 Sum_probs=210.3
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHH-----------------------------HHHH
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSL-----------------------------MKGY 57 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-----------------------------~~~~ 57 (407)
.-|...+-.....+.+.|....|++.|...... .|-.-..|..| ..++
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 345555555555566677777888777776663 22222222222 2223
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
-...+.+++++-.+.....| ++.+...-+....+.....+++.|+.+|+++.+..|-- +. +..+|..++-+--.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR--l~-dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR--LD-DMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--ch-hHHHHhHHHHHHhhh
Confidence 33334445555555555544 33344444444445556666777777777666653321 11 444554443322221
Q ss_pred CCHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 138 GRFKDAIEVFRK-MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 138 g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
..+ .++-+ ....+ +--+.|...+++-|.-.++.++|..+|++.++.+ +-....|+.++.-|....+...|.+.
T Consensus 313 skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111 11111 1234455667777788889999999999999864 23467899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE 296 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 296 (407)
|+++++-. +-|...|..|+++|.-.+...=|+-+|++...-.|.|...|..|+.+|.+.++.++|++.|.++...+ .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 99999864 55888999999999999999999999999999888899999999999999999999999999999864 4
Q ss_pred CcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 297 FSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.+...+..++.+|.+.++.++|...+++..+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5778899999999999999999999998765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-14 Score=133.74 Aligned_cols=295 Identities=9% Similarity=0.024 Sum_probs=164.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
...|...|++++|+++|+++.+. .|.++..+..++..+...++.++|++.++++...+ |+...+..++..+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~ 181 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHh
Confidence 55777889999999999999986 44467788888888999999999999999998765 334445455555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHH-------------------------------
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE------------------------------- 145 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------------------------- 145 (407)
.++..+|++.++++.+..|. +...+..+..++.+.|-...|.+
T Consensus 182 ~~~~~~AL~~~ekll~~~P~------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 66676699999999888654 22233333333333332222221
Q ss_pred -----------------HHHHHhhC-C-CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 146 -----------------VFRKMGEY-R-CSPDTL----SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 146 -----------------~~~~~~~~-~-~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
-++.+... + .|+... ...-.+.++...|++.++++.|+.+...+.+....+-..+..
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 12221110 0 011111 112233444555556666666666555544433445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CC---
Q 015416 203 ACFEVNRVDDGATYFRKMVDSG-----LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK------------MD--- 262 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~--- 262 (407)
+|...+++++|+.+|+.+.... .+++......|.-+|...+++++|..+++.+.+..| |+
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 5666666666666665554321 112233344555555555666666655555554211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 263 DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
...+..++..+...|+..+|.+.++++... -|-+..+...++..+...|++.+|...++...
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 123344445555555566666665555554 24555555555555555555555555555444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-14 Score=131.48 Aligned_cols=337 Identities=16% Similarity=0.114 Sum_probs=245.2
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
|.....-.........|++++|.+++.++++. .|.+...|..|+.+|-+.|+.+++...+-.+-..+ |.|...|
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W 210 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELW 210 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHH
Confidence 33444444445555569999999999999995 56789999999999999999999999988887776 5577899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL----SFN 163 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~ 163 (407)
..+.....+.|.++.|.-+|.++++..|. +...+---+..|-+.|+...|...|.++.....+.|.. ...
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999998765 55566667889999999999999999999875322322 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------------
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG------------------ 224 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------ 224 (407)
.++..+...++-+.|.+.++..... +-..+...++.++..|.+...++.+...........
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677778778899988887752 223456678888889998888888888777766511
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 225 ---------LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-K--LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 225 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.++..+ ..+.-++.+....+....+...... . ...+...|.-+..+|...|++.+|+.+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1222333 1222233333333333333333333 2 2335677888889999999999999999988886
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccccccc
Q 015416 293 GGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNA 372 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 372 (407)
.+ ..+...|..++++|...|..++|...++++.... |......+.|++++..+|
T Consensus 444 ~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~----------------p~~~D~Ri~Lasl~~~~g--------- 497 (895)
T KOG2076|consen 444 EG-YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA----------------PDNLDARITLASLYQQLG--------- 497 (895)
T ss_pred cc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC----------------CCchhhhhhHHHHHHhcC---------
Confidence 43 2335578888899999999999999988887654 566667777777777777
Q ss_pred ChhhHhhHHHH
Q 015416 373 NANEAASVAEA 383 (407)
Q Consensus 373 ~~~ea~~~~~~ 383 (407)
+.++|....+.
T Consensus 498 ~~EkalEtL~~ 508 (895)
T KOG2076|consen 498 NHEKALETLEQ 508 (895)
T ss_pred CHHHHHHHHhc
Confidence 56655555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-14 Score=130.23 Aligned_cols=301 Identities=16% Similarity=0.169 Sum_probs=216.4
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
-|+...+.|...|.-.|+++.+..+...+......-..-...|..++++|-..|++++|..+|.+..+.+++. ....+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccc
Confidence 4677788899999999999999999999888521112234568889999999999999999999998876321 24556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG----RFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
..++..|.+.|+++.+...|+.+.+..+. +..+...|+..|...+ ..+.|..++.+..... +.|...|-
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 67889999999999999999999987654 5667777888887775 5567777777776654 56777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC------CCHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMS----DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS---GLR------PNLA 230 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~------~~~~ 230 (407)
.+...+-..+-+.. +.+|..+. ..+..+.+...|.+...+...|.+.+|...|...... ... ++..
T Consensus 419 ~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 77776665544433 66665543 3445567778888888888888888888888877753 112 2233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
+-..+...+-..++++.|...|..+.+..|.-...|..++......+...+|..++..++..+ ..++..+..++..+.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHH
Confidence 455567777777788888888888888666666677777655555677778888888877754 445555555665565
Q ss_pred hcCcHHHHHH
Q 015416 311 KEGREEEVVK 320 (407)
Q Consensus 311 ~~g~~~~A~~ 320 (407)
+...+.-|.+
T Consensus 576 ~k~~~~~a~k 585 (1018)
T KOG2002|consen 576 KKSEWKPAKK 585 (1018)
T ss_pred hhhhhccccc
Confidence 5555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-14 Score=114.09 Aligned_cols=294 Identities=13% Similarity=0.114 Sum_probs=223.9
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--hhhHHHHHHHHHhcCCH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS--AVANNSVLDALCNNGKF 100 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 100 (407)
..+.++|.++|-+|.+ ..+.+..+.-+|++.|-+.|..+.|+.+.+.+.... +.+.+ ..+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhh
Confidence 4678999999999998 445567777889999999999999999999888642 22221 22345577889999999
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL----SFNNLIDQLCKNGMLA 176 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 176 (407)
|.|..+|..+.+.+.- -..+...|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+++
T Consensus 124 DRAE~~f~~L~de~ef------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 124 DRAEDIFNQLVDEGEF------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred hHHHHHHHHHhcchhh------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999875432 34478889999999999999999999998876433322 4566667777788999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
.|..++.+..+.+ +..+..-..+...+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.
T Consensus 198 ~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 198 RARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998753 223445556788899999999999999999987544445588889999999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh---hcCcHHHHHHHHHHHHHhhHH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS---KEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+. .+....-..+........-.+.|...+.+-+.. .|+...+..+++... ..|+..+....+++|.....+
T Consensus 277 ~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 277 ET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred Hc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 82 334444555555555555567777777766665 688887777777543 336678888888888766644
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-15 Score=132.88 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCCchhhHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMEC-YNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~ 89 (407)
.+...+..+|...+++++|..+|+.+.+..|-..-+.++|.+.+..+-+. -++.+ -+.+...+ +....+|..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~---~~sPesWca 426 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD---PNSPESWCA 426 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC---CCCcHHHHH
Confidence 34577889999999999999999999998655556788888887765332 22222 23444444 456789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++.+|.-+++.+.|++.|++.+..++. ...+|+.+..-+.....+|.|...|+..+... +.+-..|.-++..|
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVY 499 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhhe
Confidence 999999999999999999999988655 67799999999999999999999999988743 23344566678889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+++|+++.... +.|+..-...+..+...+++++|+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHH
Confidence 99999999999999999853 2356677778888999999999999999999754 335556666778888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..++++.+..|.+...|..++..|.+.|+.+.|+..|.-+.+.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999888899999999999999999999999999988763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-13 Score=113.68 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=233.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|+|.+|+++...-.+. + +.....|..-+.+.-+.|+.+.+-.++.++-+.. -.++........+.....|+++.
T Consensus 97 eG~~~qAEkl~~rnae~--~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH--G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--GDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhc--C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHhCCCchh
Confidence 69999999999987775 3 2334455666777788999999999999998763 24566677777888999999999
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-------SFNNLIDQLCKNGML 175 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~ 175 (407)
|..-++++.+.++. ++.+......+|.+.|++.....++..+.+.|.-.+.. +|..++.-....+..
T Consensus 172 A~~~v~~ll~~~pr------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 172 ARENVDQLLEMTPR------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHHHHHHHhCcC------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999998776 56689999999999999999999999999988766654 566666665555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.-...|+..-.. .+.++..-..++.-+...|+.++|.++..+..+++.+|+ -...-.+.+-++.+.-++..+.-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHH
Confidence 5555566655433 455677778889999999999999999999998877665 22223456778888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+..+.++..+.+|++.|.+.+.|.+|...|+..++. .|+...|..++.++.+.|+..+|....++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888888999999999999999999999999988874 8999999999999999999999999888765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-14 Score=119.73 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=227.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM--KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
.-|.++|+++.|++++..+.+. ....-...-+.|-..+.- -.++..|.++-+.++..+ .-+......-.....
T Consensus 427 ~~~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceee
Confidence 3567899999999999998886 222222222333222222 457888999988888765 445666655566667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..|++++|...|++.+..... -+.+...+.-.+-..|++++|++.|-++... +..+..+.-.+...|-...+.
T Consensus 502 ~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 789999999999999876432 2334444556788899999999999887553 235677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
.+|++++.+.... ++.|+.....|...|-+.|+-.+|.+++-.--.. ++-+..+...|...|....-+++++.+|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999988775 5667999999999999999999999987665543 5678889999999999999999999999987
Q ss_pred HhcCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 256 VKKLKMDDASYKFMMKAL-SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.- ..|+..-|..++..| .+.|++++|.++|+....+ +|.+..+..+|++.....|- .++.++-+++.+.
T Consensus 653 al-iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl-~d~key~~klek~ 722 (840)
T KOG2003|consen 653 AL-IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLEKA 722 (840)
T ss_pred Hh-cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc-hhHHHHHHHHHHH
Confidence 65 678888888877665 4689999999999999987 58899999999998877774 4566666655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-14 Score=129.84 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=240.3
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHh--hCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC---
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEK--LGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-SSVK--- 81 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--- 81 (407)
.|...|-.+...+.. ++...++..|...... ..+.++.+...|.++..+...|++.+|...|..++..- +...
T Consensus 412 ~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 455666666666544 4444557777665421 01445778889999999999999999999999888651 0011
Q ss_pred ---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 82 ---MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 82 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
++..+--.+..++-..++++.|.+.|..+.+..|. -+..|..++.+....+...+|...+......+ ..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG------YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 22223345667777788999999999999887644 33355555544455678889999999988754 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCC
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFE------------VNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~ 225 (407)
+..+..++..+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 778888888999999999998877776642 234677787788887653 345788999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
+-|..+-|.++-.++..|++.+|..+|.++.+.......+|..++.+|...|+|..|+++|+...+.+....+..+..+|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 55888889999999999999999999999999655677899999999999999999999999999987777788899999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHh
Q 015416 306 KGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 306 ~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
++++.+.|++.+|.+.+......
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999988877643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=130.43 Aligned_cols=270 Identities=10% Similarity=-0.005 Sum_probs=200.4
Q ss_pred CCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 015416 45 SDGVVYGSLMKGYFM-----KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN---------NGKFDEALKLFDRM 110 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~ 110 (407)
.+...|...+.+... .+.+++|+.+|+++++.+| .+...|..+..++.. .+++++|...++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP---~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP---NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 345555565555322 2456899999999999874 356677777665542 24589999999999
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (407)
.+..+. +..++..+..++...|++++|...|++.++.+ |.+...+..+..++...|++++|+..++++.+.
T Consensus 331 l~ldP~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-- 401 (553)
T PRK12370 331 TELDHN------NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL-- 401 (553)
T ss_pred HhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 988765 67788899999999999999999999999876 556778889999999999999999999999985
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 191 NPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 191 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
.|+ ...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++....+.+......+
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 344 3333445556777899999999999988653222455678888999999999999999999877655566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 270 MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
...|...| +.|...++.+.+...-.+..... +...|.-.|+.+.+..+ +++.+.+..
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 77778777 47888888877653222222222 44456667777777776 777766543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-13 Score=118.46 Aligned_cols=366 Identities=16% Similarity=0.061 Sum_probs=236.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD-GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
+-...+-|.+.|.+++|++.|.+.++. .|+ +..|.....+|...|+|+++++.-.++++.+| .-+-++..-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P---~Y~KAl~RRA 190 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP---DYVKALLRRA 190 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc---HHHHHHHHHH
Confidence 445567788999999999999999985 456 88899999999999999999999999988763 2344555555
Q ss_pred HHHHhcCCHHHHHHH----------------------HHHH--------HhcCCCCCccccccchHHHHHHHH-------
Q 015416 92 DALCNNGKFDEALKL----------------------FDRM--------KNEHNPPKRLAVNLGSFNVMADGY------- 134 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~----------------------~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~------- 134 (407)
.++-..|++++|+.- +... .+.+.+| .-|+.....+....+
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p--~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP--VLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC--CCCcHHHHHHHHhhcccccccc
Confidence 556666666555431 1110 0100111 111211111111111
Q ss_pred ----------------Hh--cC---CHHHHHHHHHHHhhC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 015416 135 ----------------CG--QG---RFKDAIEVFRKMGEY---RCSPD---------TLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 135 ----------------~~--~g---~~~~A~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
.. .+ .+.+|...+.+-... ....+ ..+....+..+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 10 01 122333222221110 00111 22333334445567888889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|+..++.... +...|.-+..+|....+.++.++.|....+.+ +-+..+|..-++.+.-.+++++|..-|++.....|.
T Consensus 349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 9988875433 23337778888888899999999999888754 335668888888888888999999999998887777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH----------
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE---------- 331 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------- 331 (407)
+...|..+.-+..+.++++++...|++...+ +|..+++|...+..+...+++++|.+.+++..+....
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 8888888888888888999999999999887 4788888999999999999999999998887754322
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhh
Q 015416 332 ---------------AKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATA 396 (407)
Q Consensus 332 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~ 396 (407)
..+..+...+...+|.---.+.-|+.+....+ +.+||+.+.+..+...--..+=-|
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~---------~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG---------KIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222333333334444444455555555555 777777777776665444333334
Q ss_pred hhhh
Q 015416 397 VESA 400 (407)
Q Consensus 397 ~~~~ 400 (407)
..|+
T Consensus 576 a~s~ 579 (606)
T KOG0547|consen 576 AYSL 579 (606)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-13 Score=120.12 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYG--SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
|-....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|...++++.+.. |.+...+..+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~---P~~~~al~ll 193 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA---PRHPEVLRLA 193 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 333345558999999999999999874 44554333 34678899999999999999999887 5577888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLA--VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
..+|.+.|++++|..++..+.+....++... ....+|..++.......+.+...++++.+... .+.+......+...
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHH
Confidence 9999999999999999999998765421100 00013344444445555667777777777553 35678888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..++..+.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 5555322 3344446699999999999999763 45677889999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+.|+.+.+ ..|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 348 ~~~le~al~-~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 348 SLAFRAALK-QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998 5688888999999999999999999999988653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-13 Score=122.61 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=240.2
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...|.+|...|-..|+.+++...+-.... -.|.|...|..+.....+.|++..|.-+|.++++.+ |++...
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~---p~n~~~ 243 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN---PSNWEL 243 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CcchHH
Confidence 45677899999999999999999988866655 355688999999999999999999999999999987 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTLSFNNL 165 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 165 (407)
+-.-...|-+.|+...|...|.++....++. ........--..+..|...++.+.|.+.++..... +-..+...++.+
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 6667788999999999999999999886632 11111122334466677788889999998887762 123455678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP---------------------------DEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p---------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..+.+...++.+......+......+ +... .-+.-++.+....+....+..
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~ 401 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLH 401 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHH
Confidence 999999999999998887776521122 2222 123334445555555555566
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 219 KMVDSGLRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 219 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (407)
.+.+..+.| +...|..+..+|...|++.+|+.+|..+..+.+. +...|..++++|...|.+++|++.|+.++...
T Consensus 402 ~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-- 479 (895)
T KOG2076|consen 402 FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-- 479 (895)
T ss_pred HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 666655333 4568999999999999999999999999983322 46789999999999999999999999999974
Q ss_pred CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
|.+......|...+.+.|+.++|.+.++.+.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 6666788889999999999999999999854
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-12 Score=119.32 Aligned_cols=269 Identities=14% Similarity=0.061 Sum_probs=198.3
Q ss_pred CcCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 015416 7 VADPVV-YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV--VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 7 ~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (407)
.|++.. +-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|...++.+.+.. |.+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---P~~ 186 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA---PRH 186 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC
Confidence 455444 345567788899999999999999875 24443 44446888999999999999999999987 446
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH----HHHHHHHhcCCHHHHHHHHHHHhhCC---CC
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN----VMADGYCGQGRFKDAIEVFRKMGEYR---CS 156 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 156 (407)
..++..+..++...|+++.|.+.+..+.+.+..+ ...+. .....+...+..++..+.+..+.... .+
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~------~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~ 260 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD------DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR 260 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh
Confidence 7788899999999999999999999999886542 11221 11111122333333334554444432 12
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT---YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL--AV 231 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 231 (407)
.+...+..++..+...|++++|...+++..+. .|+... ...........++.+.+.+.++...+.. +-|. ..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~l 337 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCI 337 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHH
Confidence 37888999999999999999999999999985 344332 1222223344578888999999888742 3344 66
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
..+++..+.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77999999999999999999996333 3567888888999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.3e-13 Score=108.87 Aligned_cols=257 Identities=11% Similarity=0.163 Sum_probs=193.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
-..++++|+++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++.+.+.+.-.-+ ......+...|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999876 5567788889999999999999999999988752111 0012234556778899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 214 (407)
-++.|+.+|..+.+.+ ..-......|+..|....+|++|+.+-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999998865 34456778899999999999999999999988665543 345667777777888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL-KMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..+.+..+.+ +..+..-..+++.+...|+++.|.+.++.+.+.. ..-+.+...|..+|.+.|+.++....+.++.+.+
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999998754 3345566678889999999999999999998833 2346678888999999999999999999988863
Q ss_pred CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 294 GIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+....-..+.+......-.+.|...+.+-
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 34433334444333333344555444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=116.71 Aligned_cols=230 Identities=11% Similarity=0.080 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
+.+.++|.+.|.+.+|.+.|+..+.+ .|-+.||..|.++|.+..++..|+.+|.+-++.-|. ++.....+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------DVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------hhhhhhhh
Confidence 56788888888888888888887765 345667777888888888888888888777665432 55556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
...+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 777777888888888888877764 456666667777777788888888888888887755 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 211 DDGATYFRKMVDSGLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+-++..|.+.+..--.|+. .+|..|.......|++..|.+.|+-.+...+.+...++.|...-.+.|++++|..+++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 8888888877754333443 37777888778888888888888888777777778888888888888888888888887
Q ss_pred HHhc
Q 015416 289 ILDD 292 (407)
Q Consensus 289 ~~~~ 292 (407)
+...
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-13 Score=126.05 Aligned_cols=267 Identities=9% Similarity=-0.024 Sum_probs=195.6
Q ss_pred CHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 015416 9 DPVVYSYLMLGFVR-----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM---------KGMEEEAMECYNEAV 74 (407)
Q Consensus 9 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 74 (407)
+...|...+.+-.. .+++++|+.+|++..+. .|.+...|..+..++.. .+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555556555322 23468999999999985 33356677777766553 245899999999999
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
+.+ |.+..++..+..++...|++++|...|+++.+..+. +...+..+..++...|++++|+..+++..+..
T Consensus 332 ~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 332 ELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred hcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 987 457888889999999999999999999999998765 56688899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015416 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR 234 (407)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (407)
|.+...+..++..+...|++++|+..++++.....+-++..+..+..++...|++++|...+.++.... +.+....+.
T Consensus 403 -P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~ 480 (553)
T PRK12370 403 -PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNL 480 (553)
T ss_pred -CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHH
Confidence 223334444555677789999999999998865322245567788889999999999999999987632 223446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+...|...| +.|...++.+.+...-.......+...|.-.|+-+.+..+ +++.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777778777 4888888887772211111122244555566776666666 777664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-12 Score=107.88 Aligned_cols=308 Identities=13% Similarity=0.179 Sum_probs=228.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
.+.+..+|.++|.+.++.-..+.|.++|++.... ..+.+..+||.+|.+-.-. ...++..+|.+.. +.||..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk--m~Pnl~ 274 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQK--MTPNLF 274 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh--cCCchH
Confidence 4557789999999999999999999999999887 6778888999988775433 3378889999888 899999
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHH-HHHHHHHHhh----CCC-
Q 015416 86 ANNSVLDALCNNGKFDE----ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD-AIEVFRKMGE----YRC- 155 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~- 155 (407)
|+|.++.+..+.|+++. |.+++.+|++.|+.| ...+|..++..+++.++..+ +..++.++.. ..+
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-----sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-----SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999998765 456778899999988 88899999999999988755 4444444432 111
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015416 156 ---SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG----VNPD---EYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 156 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 225 (407)
+.|...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2344567777888888888888888776654321 3333 33466777778888889999999999986667
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH----
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGG-KL--------DE-----ILEIV---- 286 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~---- 286 (407)
-|+..+...++++....|+++-.-++|..+.. +..........++..+++.. .. .. |..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999988888888877 44444444444444444433 10 00 11111
Q ss_pred ---HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 287 ---GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 287 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.++.+ ..........++-.+.|.|+.++|.+++..+.+.+
T Consensus 510 ~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 510 SQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 12222 34566667777888999999999999999886544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-13 Score=111.54 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=159.1
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.....+..++..+...|++++|...|++++... +.+...+..+...+...|++++|.+.+++..+..+. +.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~ 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NG 99 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH
Confidence 345677888888889999999999999888765 445677888888888899999999999888876543 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
..+..+...+...|++++|.+.|++...... +.....+..+..++...|++++|...+.+..+.. +.+...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 5777888888899999999999988876421 2234567778888888999999999999888753 3346677788888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+...|++++|...+++..+. .+.+...+..++..+...|+.+.|..+++.+..
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88999999999999988875 344566777788888888999999888877665
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=114.12 Aligned_cols=284 Identities=13% Similarity=0.067 Sum_probs=227.1
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
|+.-|+.....-..-+...+++.+..++++.+.+. .|+....+..-|.++...|+..+-..+-.++.... |...
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a 312 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKA 312 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCC
Confidence 34556667777778888899999999999999984 67788888888889999999888888888888775 5578
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.+|-+++--|.-.|+..+|.+.|.+....++. -...|-.++..|+-.|..++|+..+....+.= +..-.-+-.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LY 385 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLY 385 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHH
Confidence 88999998888889999999999998776544 23389999999999999999999888776541 122223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----G--LRPNLAVYNRLVGK 238 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~ 238 (407)
++--|.+.+.+..|.++|.++... .+.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|+++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 566788889999999999999875 3446778888888888889999999999887731 0 01134478999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
|.+.+.+++|+..+++.+...+.+..++..++-.|...|+++.|++.|.+.+.. .|+..+-..+
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~~~~l 528 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIFISEL 528 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHHHHHH
Confidence 999999999999999999988889999999999999999999999999999875 5665444333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-13 Score=114.24 Aligned_cols=189 Identities=10% Similarity=0.052 Sum_probs=156.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
...|++++|.+.|++.+.... .-......+.-.+-..|++++|+..|-++... +..+......+...|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 446789999999999887542 22333444566678889999999999888653 3446778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 294 (407)
+++.+.... ++.|+.+...|...|-+.|+-..|++++-.--.-+|.+..+...|...|....-+++++.+|+++--
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---
Confidence 999888764 5667889999999999999999999988777777888999999999999999999999999999865
Q ss_pred CCCcHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHhh
Q 015416 295 IEFSEELQEFVK-GELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 295 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.|+..-|..++ .++.|.|++.+|.++++.+.++-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 588888887665 57788999999999999987654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-12 Score=110.02 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
.+..+...|...|++++|...+++..+.. +.+...+..++..+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2233344444444444444555544444444432 122334444444445
Q ss_pred hcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
..|++++|.+.++++..... +.....+..++..+...|++++|...+.+.....+.+...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443211 11223444455555566666666666666555444445555556666666666666666
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 285 IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++++... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665554 13344444455555556666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-13 Score=108.78 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|-..-+.+...|.+.|-+.+|.+-|+.-.+. .|-+.+|..|.+.|.+..++..|+.+|.+-+..- |.++....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~l~ 294 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTYLL 294 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---Cchhhhhh
Confidence 3334478899999999999999999998874 5788899999999999999999999999998763 55666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
...+.+-..++.++|.++|+.+.+..+. ++.+...+...|.-.++++-|+.+|+++++.|+ .+...|+.+.-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLC 367 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPI------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLC 367 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCc------cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHH
Confidence 7889999999999999999999988654 666777778889999999999999999999995 688999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
|.-.++++-++.-|++.+..-..|+ ...|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999987544455 4568888888899999999999999998764 446779999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015416 247 EAKSFFDIMVKK 258 (407)
Q Consensus 247 ~A~~~~~~~~~~ 258 (407)
.|..++......
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999988873
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-11 Score=105.58 Aligned_cols=306 Identities=12% Similarity=0.019 Sum_probs=220.0
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS--DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK 81 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 81 (407)
.|+..+-.-|-.=...|-+.|..-.+..+....+.- |+.. -..+|..-...|.+.+.++-|..+|..+++.. +
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi--gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p 547 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI--GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---P 547 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh--ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---c
Confidence 344455555555555555555555555555555543 3221 23567777777777788888888888887764 4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 82 MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
.+...|......--..|..++-..+|+++...-+. ....|......+...|++..|..++....+.. +.+...
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 56667777766666667788888888888776544 44466666777777888888888888887764 446667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL-AVYNRLVGKLV 240 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 240 (407)
|..-+..-..+..++.|..+|.+... ..|+...|.--+..-...+..++|.+++++.++. -|+. ..|..+++.+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 87777888888888888888888776 4567777777777777778888888888888773 3444 37778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
+.++.+.|...|..-.+..|..+..|..+...--+.|.+-.|..++++.+-++ |-+...|...++.-.|.|..+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887777777777788888888788888888888888887764 6667777778888888888888887
Q ss_pred HHHHHHH
Q 015416 321 LMEKKER 327 (407)
Q Consensus 321 ~~~~~~~ 327 (407)
++.+...
T Consensus 775 lmakALQ 781 (913)
T KOG0495|consen 775 LMAKALQ 781 (913)
T ss_pred HHHHHHH
Confidence 7776653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-11 Score=101.75 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=156.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 176 (407)
.|+.-.|..-|+..+...+.+ ...|--+..+|....+.++..+.|....+.+ +.++.+|..-...+.-.++++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 355555666666665554442 2236667777888888888888888887766 556777777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
+|..=|++.+... +-+...|..+..+..+.+++++++..|++..+. ++.-+.+|+.....+..+++++.|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 8888888887742 224666777777777888888888888888865 55566788888888888888888888888887
Q ss_pred hcCCC------CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 257 KKLKM------DDASYKFMM-KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 257 ~~~~~------~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..-+. ++..+..-. ..+.-.+++..|+.+++++.+.+ |-....|..|+....+.|+.++|+++|++....
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 72222 222222111 11223478888888888888753 445558888899889999999999999887543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-10 Score=104.52 Aligned_cols=297 Identities=10% Similarity=0.006 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.||+.-...|.+.+.++-|..+|....+- .+.+...|......--..|..+.-..+|++++..- +.....|...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---PKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CcchhHHHHH
Confidence 46777778888889999999999999884 56688889888888888899999999999999874 5566778778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
...+-..|+...|..++.++.+..+. +...|..-+..-....+++.|..+|.+.... .|+...|.--+..--
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn------seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN------SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC------cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 88888889999999999999887665 5668888888899999999999999998875 478888877777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
-.+..++|.+++++.++. -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-....|..|...--+.|.+-.|.
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 788999999999988874 344 567888888899999999999888876653 3445668888888888889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++++..-..|.+...|...++.-.+.|+.+.|..++.++++.. |.+...|..-+...-+.++-..+...+++..
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 99999988888899999999999999999999999998888863 5555555555555555555555555554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-11 Score=107.94 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=225.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.++........-+...+++.+..++++.....+ |+....+..-|.++...|+..+-.-+=.++.+..|. .+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~------~a 312 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS------KA 312 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CC
Confidence 355566666777888999999999999999987 667777777788999999988888888888888765 67
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.+|-+++--|.-.|+..+|.+.|.+....+ +.=...|-..+..|.-.|..++|+..|..+-+. ++-..--+.-+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 799999999999999999999999988764 223457889999999999999999999888663 111111233355668
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHhcC
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-------KLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 277 (407)
.+.+.++.|.++|.++.... +.|+.+.+-++-.....+.+.+|..+|+..+. ..+.-..+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88999999999999999742 55777889998888889999999999998885 11124567899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
++++|+..+++.+.. .+.+..++..++-.|...|+++.|.+.|.+.....+.
T Consensus 470 ~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred hHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999999999999997 4888899999999999999999999999998865533
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-11 Score=100.00 Aligned_cols=306 Identities=13% Similarity=0.197 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHH--HHHcCCHHHH-HHHHHHHHhCCC---------
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKG--YFMKGMEEEA-MECYNEAVGENS--------- 78 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~--------- 78 (407)
.+=|.|+.. ..+|....+.-+|+.|.+. |++.+...-..|++. |....++.-| .+.|-.|.+.+.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345666665 4678899999999999998 777777766665543 3333333322 122323322210
Q ss_pred --------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 79 --------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 79 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..|.+..++..+|.++++--..+.|.+++++..+...+. +..+||.+|.+-.-.. ..+++.+|
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-----~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-----YREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-----eHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 135567889999999999999999999999988766554 7778998887755333 37889999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH---
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKNGMLAE----AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD-GATYFRKMVD--- 222 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~--- 222 (407)
....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998875 56788889999999999999999999988888754 4444444442
Q ss_pred -CCC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 223 -SGL---RP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKMDD---ASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 223 -~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
..+ .| +...|...+..|.+..+.+-|.++-.-+.. .++|+. .-|..+....+.....+.-...|+.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 23 344666777778888898888888777766 233332 23566677778888889999999998
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+-. -+-|...+...+.++..-.|+++-.-+++..+..-+
T Consensus 425 VP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 425 VPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 875 356888888888888888898888888888877655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-11 Score=101.33 Aligned_cols=308 Identities=11% Similarity=0.047 Sum_probs=232.1
Q ss_pred CcCHHHHHHHHHHHHh--cCChhhH--HHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 7 VADPVVYSYLMLGFVR--DGDSDGV--FRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~--~g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+|+..+...-+.++.. .++-..| ..++-+... -.+.|++....+..++...|+.++|+..|++....+| -
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~---~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp---y 264 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT---TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP---D 264 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc---cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh---h
Confidence 3443343333444333 3343333 444444444 4667889999999999999999999999999988763 2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+........-.+...|+++....+...+...... ....|..-+.......+++.|+.+-++.++.. +.+...|
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 3444444455567889998888888877654311 33345555666777889999999999998865 5567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV-GKLV- 240 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 240 (407)
-.-+..+...|++.+|.-.|+.++... +-+...|.-|+.+|...|.+.+|.-.-+...+. ++.+..+...++ ..+.
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 777888999999999999999998742 346889999999999999999998888777653 344555555553 2332
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
....-++|.+++++.+...|.-....+.+...|...|+.+.++.++++.+.. .|+...+..|++.+.....+++|++
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2334578999999998866666778889999999999999999999999985 6899999999999999999999999
Q ss_pred HHHHHHHhhHHH
Q 015416 321 LMEKKEREKAEA 332 (407)
Q Consensus 321 ~~~~~~~~~~~~ 332 (407)
.|....+..+..
T Consensus 493 ~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhcCccc
Confidence 999998766543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-11 Score=105.80 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC
Q 015416 61 GMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR 139 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 139 (407)
+..+.++.-+.+++...+-.++ ....|..+...|...|++++|...|++.++..+. +..+|+.+...|...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Confidence 3566677777777754321111 1345666777777788888888888887776544 55677788888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015416 140 FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
+++|...|++.++.. |.+..+|..++.++...|++++|++.|++..+. .|+..........+...+++++|...|.+
T Consensus 114 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888888877754 334567777777777788888888888887764 34322222222233455677888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 220 MVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-------LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..... .|+...+ .......|+...+ ..+..+... .+....+|..++..+...|++++|+..|+++...
T Consensus 191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55322 2322221 2223334555443 344444431 1223457888888888888888888888888875
Q ss_pred CCCCCcHHHHH
Q 015416 293 GGIEFSEELQE 303 (407)
Q Consensus 293 ~~~~~~~~~~~ 303 (407)
+ +++..-+.
T Consensus 266 ~--~~~~~e~~ 274 (296)
T PRK11189 266 N--VYNFVEHR 274 (296)
T ss_pred C--CchHHHHH
Confidence 3 34444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-11 Score=103.03 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.|..++..+...|+++.|+..|+++++.+ |.+...|+.+...+...|++++|...|++.++..+. +..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~ 136 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYL 136 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 35555555556666666666666665554 334555555666666666666666666665554433 334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
.++.++...|++++|++.|+...+.. |+..........+...+++++|...|.+.... ..|+...+ .......|
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg 210 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLG 210 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHcc
Confidence 55555555666666666666555543 22211111112223345556666655444322 12221111 11222233
Q ss_pred ChHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 015416 209 RVDDGATYFRKMVDS---G--LRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD 263 (407)
Q Consensus 209 ~~~~a~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (407)
+...+ +.+..+.+. . +.| ...+|..++..+...|++++|...|++.....+|+.
T Consensus 211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33332 233333211 0 001 123555556666666666666666666655444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-10 Score=105.70 Aligned_cols=292 Identities=17% Similarity=0.143 Sum_probs=212.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
....+...|++++|++.++.-.. .+..........+..+.+.|+.++|..+|..++..+ |.+..-|..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHh
Confidence 34567889999999999988766 356567777889999999999999999999999988 556777777777663
Q ss_pred hc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 96 NN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK-DAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 96 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
-. .+.+....+|+++....+... +...+.-.+.....+. .+..++..++..|+| .+|+.+-..|
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly 153 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSD-------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLY 153 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcccc-------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 32 357788889998887764321 1111211222222232 345566777777854 3445555566
Q ss_pred HHcCCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 015416 170 CKNGMLAEAEELYGEMSDK----G----------VNPDE--YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVY 232 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 232 (407)
.......-...++...... + -+|+. .++..+...|-..|++++|++++++.+++ .|+ +..|
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely 231 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELY 231 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 6555555555555554321 1 12333 45567788899999999999999999985 455 6689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHH--------HH
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ--------EF 304 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------~~ 304 (407)
..-++.|-+.|++.+|...++.......-|...-+..+..+.+.|++++|.+++......+. .|....+ ..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHH
Confidence 99999999999999999999999997777888888899999999999999999998876542 3333221 33
Q ss_pred HHHHHhhcCcHHHHHHHHHHHH
Q 015416 305 VKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+.+|.+.|++..|++.+..+.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4779999999999998887776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-11 Score=99.69 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=226.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
-.|+|.+|++...+..+.+ +-....|..-+.+-...|+.+.+-.++.++.+....+ +....-+........|
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-----~l~v~ltrarlll~~~ 167 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-----TLAVELTRARLLLNRR 167 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHhCC
Confidence 3699999999999987776 3345667777788889999999999999998874443 6667888889999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChH
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVD 211 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~ 211 (407)
+++.|..-+.++...+ +.+.........+|.+.|++.....++.++.+.|.-.+. .+|..++.-....+..+
T Consensus 168 d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 168 DYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999999999999876 677888999999999999999999999999998866553 46667777666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
.-...++..-.. .+-++..-..++.-+.++|+.++|.++..+..+ ...|. ......+.+-++...-++..++-.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHH
Confidence 666677766543 455677888899999999999999999999888 33333 344455677888999999999888
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccccc
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMAD 370 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 370 (407)
+.. +.++..+..|+..|.+.+.|.+|...|+...+.+.. ..-+..++..+...+
T Consensus 322 ~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-----------------~~~~~~la~~~~~~g------- 375 (400)
T COG3071 322 KQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-----------------ASDYAELADALDQLG------- 375 (400)
T ss_pred HhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-----------------hhhHHHHHHHHHHcC-------
Confidence 875 555588999999999999999999999977665533 233445556666777
Q ss_pred ccChhhHhhHHHHhc
Q 015416 371 NANANEAASVAEAQA 385 (407)
Q Consensus 371 ~~~~~ea~~~~~~~~ 385 (407)
...+|.+++++..
T Consensus 376 --~~~~A~~~r~e~L 388 (400)
T COG3071 376 --EPEEAEQVRREAL 388 (400)
T ss_pred --ChHHHHHHHHHHH
Confidence 7777777776655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-11 Score=109.63 Aligned_cols=251 Identities=15% Similarity=0.171 Sum_probs=186.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-cccc-cchHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR-LAVN-LGSFNVMADGYCGQGRFKDAIEVFRKMGEY----- 153 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 153 (407)
|.-..+...+...|...|+++.|+.++.+.++.-..... ..+. ....+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456667899999999999999999998775100000 0002 224456888999999999999999998652
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 015416 154 R-CSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDK-----GVN-PD-EYTYGLLMDACFEVNRVDDGATYFRKMVDS- 223 (407)
Q Consensus 154 ~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 223 (407)
| ..|. ..+++.|..+|.+.|++++|..+++++.+. |.. |. ...++.++..|...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1122 347888889999999999999998887541 222 22 335777888899999999999999887642
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----c---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 224 --GLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----K---LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 224 --~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
-+.++ ..+++.|...|...|++++|.++++.++. . .......++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11222 34899999999999999999999999987 1 2223557888999999999999999998876
Q ss_pred Hhc---C--CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 290 LDD---G--GIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 290 ~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
... . +.+....+|..|+.+|.+.|++++|.++.+.+...+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 543 1 12233448889999999999999999999998865543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=110.03 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=184.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGE-----NSSVKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEHNPP-- 117 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 117 (407)
-..+...|...|...|+++.|+.++.+++.. +. ..|... ..+.+...|...+++++|..+|+++...-...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3456667999999999999999999998865 10 123333 34457889999999999999999987642100
Q ss_pred CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 015416 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-----RC-SPDTL-SFNNLIDQLCKNGMLAEAEELYGEMSDK-- 188 (407)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 188 (407)
....--..+++.|..+|.+.|++++|..+++...+. +. .|.+. .++.++..++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 001114457888999999999999998888776432 21 12222 4677888899999999999999987542
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 189 -GVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDS----GL--RPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 189 -~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
-+.++ ..+++.+...|...|++++|+++|++++.. +. .+. ...++.|...|.+.+++.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 12222 468999999999999999999999998742 11 222 3478889999999999999999998776
Q ss_pred h-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 257 K-------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 257 ~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
. ..+....+|..|+..|...|+++.|+++.+.+..
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6 2333456899999999999999999999988763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-10 Score=99.16 Aligned_cols=305 Identities=11% Similarity=0.054 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcch---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV---YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
..|..+...+...|+.+.+...+....+. .+++... .......+...|++++|..++++++... |.+...+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~ 80 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQA---LAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHH
Confidence 34677777777889999988888887775 3333332 3334556678899999999999999876 3344454
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 NSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.. ...+.. .+..+.+.+.+..... ..|. .......+...+...|++++|...+++..+.. +.+...+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~ 152 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAP--ENPD----YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVH 152 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCc--CCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 42 223333 3445555555544111 1111 33455567778999999999999999999876 55677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGV-NPDE--YTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPNLAVY-N--RLV 236 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~ 236 (407)
.+..++...|++++|..++++...... .|+. ..|..+...+...|++++|..+++++..... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 999999999999999999999887432 1232 3455788899999999999999999864322 1222211 1 333
Q ss_pred HHHHhcCCHHHHHHH--HHHH-HhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCcHHHHHH
Q 015416 237 GKLVQVGMLDEAKSF--FDIM-VKKLK--MDDASYKFMMKALSDGGKLDEILEIVGGILDDGG-------IEFSEELQEF 304 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~--~~~~-~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~ 304 (407)
.-+...|....+.++ +... ....+ ...........++...|+.+.|..++..+..... ..........
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 344445544333333 2111 11111 1122234567788889999999999998866321 1112233444
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 305 VKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.++.+.|+.++|.+.+.......
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4557789999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-11 Score=92.42 Aligned_cols=201 Identities=15% Similarity=0.097 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+...|.-.|.+.|++..|..-++++++.+ |.+..+|..+...|.+.|+.+.|.+.|++.+...+. +..+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLN 107 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLN 107 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhh
Confidence 34456666677777777777777777666 335566666666677777777777777776666544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
.....+|..|++++|...|++....-. .-...+|..++-+..+.|+++.|...|++.++.. +-.+.+...+.....+.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhc
Confidence 666666777777777777766655311 1123456666666666666666666666666542 11244555566666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
|++-.|..+++.....+. ++..+....|+.-...|+-+.+.++=..+...+|
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 666666666666655442 5555555555555666666665555555554433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-11 Score=92.75 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=152.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
+...|.-.|...|++..|..-+++.++.++. +..+|..+...|.+.|+.+.|.+.|++.++.. +.+-.+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhh
Confidence 4555677788888888888888888887655 56678888888888888888888888888765 5566778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+.-+|..|++++|...|+++...-.-+ -..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.......|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 888888888888888888887642222 24577788888888888888888888888753 2344567777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+-.|..+++.......++..+....|+.-...|+.+.+-++=.++...
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888766678888888888888888888777776666665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-10 Score=95.57 Aligned_cols=317 Identities=10% Similarity=0.065 Sum_probs=214.6
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
..|+...|++.|..=.+.+.++.|..+|+...- +.|++.+|-.....-.+.|+...|..+|+.+...-.+-..+..
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 578888899999988888889999999988875 4588888888888888888888888888887754211112223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--------------------------------------cccccchH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR--------------------------------------LAVNLGSF 127 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~ 127 (407)
.+.+...-=..+..++.|.-+|.-.+..-+.... ...|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 3444444334556666676666666554333210 00144455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL--SFNNLI--------DQLCKNGMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
-..+..-...|+.+...++|++.+.. +||-.. .|.-.| -.=....+.+.+.++|+..++. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 56666666677777777777777764 344322 111111 1112456777777777777763 44445555
Q ss_pred HHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 198 GLLMDAC----FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 198 ~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..+--.| .+..++..|.+++..++. .-|-..+|...|..-.+.++++.+.+++++.+.-.|.+..+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 5444333 356777788888877764 4677778888888888888888888888888886667778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
...|+.+.|..+|.-+++...+......+...++.-...|.++.|..+++++.....
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 888888888888888887654455555666777777778888888888888876553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=98.56 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=216.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
++-|+.....+...+...|+.++|+..|++.... .+-+........-.+.+.|+++....+...+.... ..+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~ 301 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTAS 301 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchh
Confidence 4567778899999999999999999999998875 22233344444556678899998888888887654 34566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
.|..-+......+++..|+.+-++.+...+. +...+-.-...+...|++++|.-.|+...... |-+..+|.-|
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL 374 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGL 374 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 6666677777889999999999999887544 55677777788999999999999999988764 5678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM-DACFE-VNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQV 242 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 242 (407)
+..|...|.+.+|.-+-+...+. ++.+..+...+. ..|.- ..--++|.++++..+. +.|+.. ..+.+...+...
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhh
Confidence 99999999999999888777654 445666666553 33332 2335789999999887 456644 778888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|..++++.++++.+. ..||....+.|++.+...+.+++|.+.|..++..
T Consensus 452 g~~~D~i~LLe~~L~-~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLI-IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccchHHHHHHHHHh-hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999988 4678888999999999999999999999999986
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-09 Score=90.42 Aligned_cols=332 Identities=13% Similarity=0.097 Sum_probs=243.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh-hHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV-ANNSVLD 92 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~ 92 (407)
--|...+...|++..|+..|...++ +.|.+-.++..-...|...|+...|+.-+.+.++.. ||-. +...-..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve---~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg~ 114 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVE---GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhch
Confidence 3456677778999999999999988 544555566666778999999999999999999864 4432 2223446
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcc-------ccc--cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRL-------AVN--LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+.++|.++.|..-|+.++...+..... .+. .......+..+.-.|+...|+.+...+++.. +-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 6889999999999999999886542210 000 1122233455677899999999999999865 67888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHH----
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA----VYNRL---- 235 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l---- 235 (407)
.-..+|...|.+..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.++ +.||.. .|-.|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 99999999999999999888887653 34566777788889999999999999999988 456643 22221
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 236 -----VGKLVQVGMLDEAKSFFDIMVKKLKM----DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 236 -----~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+......++|.++..-.+...+..|. ....+..+-.++...|++.+|++...+++... +.+..++.--+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHH
Confidence 12234567888888888888773332 23345666778888999999999999999852 45578888889
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015416 307 GELSKEGREEEVVKLMEKKEREK---AEAKAREAEAAEAAKRSARAAIASLIPSK 358 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (407)
.+|.-...++.|+.-|++..+.. ............+...+.+...|-+||-+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVk 403 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVK 403 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence 99999999999999999987543 22222222333445566677778777755
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-10 Score=103.94 Aligned_cols=261 Identities=16% Similarity=0.137 Sum_probs=194.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
....+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+|. +..-|..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd------n~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD------NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHH
Confidence 445667889999999999876554 3444566677889999999999999999999999865 5556777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 133 GYCGQG-----RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA-EAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 133 ~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+..... +.+....+|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|..+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 763332 5677788888887643 44444333333333323333 455677777888865 366777777765
Q ss_pred cCChHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMVDS----G----------LRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
.....-..+++...... + -+|+. .++..+.+.|...|++++|+.++++.+...|..+..|..-+
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55555555555554421 1 13444 35577788999999999999999999997777899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.+.+.|++.+|.+.++.+...+ ..|.-+-+..+..+.|.|+.++|.+.+....+.+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999974 5666677778888999999999999999987765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-10 Score=102.76 Aligned_cols=258 Identities=16% Similarity=0.075 Sum_probs=199.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
.+.-+.+.|++.+|.-.|+.+++.+ |-+..+|..|+......++-..|+..+++..+..+. +..+...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~------NleaLmaLAV 361 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT------NLEALMALAV 361 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc------cHHHHHHHHH
Confidence 4555678899999999999999998 558999999999999999999999999999998765 7788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-------LIDQLCKNGMLAEAEELYGEM-SDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~ 204 (407)
.|...|.-..|+++++..+.... |-...-.. .-..+.....+....++|-++ ...+..+|+.....|.-.|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999999876431 11000000 001111222344455555555 4555557888899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.-.|++++|...|+.++... +-|...||.|+-.++...+.++|+..|.++++..|--..+...|+.+|...|.+++|.+
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999843 33566999999999999999999999999999666667799999999999999999999
Q ss_pred HHHHHHhcC--------CCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 285 IVGGILDDG--------GIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 285 ~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
.|-.++... ...++..+|..|-.++.-.++.+-+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 998877542 1122345777777777777777654443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-09 Score=86.46 Aligned_cols=279 Identities=11% Similarity=0.101 Sum_probs=165.0
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|.-.|+....--+++.+..+.+..+++.|++++..-.++ .+.+....+.|+.+|....++..|-..|+++....
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--- 74 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--- 74 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 444565555555778888888999999999999888875 34477888999999999999999999999998754
Q ss_pred CCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCCcc------------ccccchHHHHHHH
Q 015416 81 KMSAVANNS-VLDALCNNGKFDEALKLFDRMKNEHN--------------PPKRL------------AVNLGSFNVMADG 133 (407)
Q Consensus 81 ~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~------------~~~~~~~~~l~~~ 133 (407)
|...-|.. -...+.+.+.+..|+++...|..... ..+.+ ..+..+.+...-.
T Consensus 75 -P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 75 -PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred -hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 33333333 34556677777778777766654200 00000 0022333444444
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------------CH------
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP-------------DE------ 194 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-------------~~------ 194 (407)
..+.|+++.|.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++. |.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 556666777776666666544333445555433 3344566667777666666665431 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 015416 195 ---------YTYGLLMDACFEVNRVDDGATYFRKMV-DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264 (407)
Q Consensus 195 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (407)
..++.-...+.+.++++.|.+.+..|- ......|+.|...+.-.= -.+++.+...-+.-+....|....
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 112222223345566666666555554 111223444444433221 123444444444444444555667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
||..++-.||+..-++-|.+++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 788888888887777777777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-09 Score=92.47 Aligned_cols=318 Identities=11% Similarity=-0.007 Sum_probs=197.7
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA-VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+..|..+...+...|+.+.+...+.......+. .++. .........+...|++++|.+.++++.+..|. +.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~ 77 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR------DL 77 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cH
Confidence 4556777888888889999988888887766532 1222 22233345567889999999999999987544 33
Q ss_pred chHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNV---MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
..+.. +.......+....+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 34332 12222234555556665554222 223334455677788999999999999999999863 34567788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHH-H--HHHHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGL-RPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK--MDDASY-K--FMMKAL 273 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-~--~l~~~~ 273 (407)
.+|...|++++|..++++...... .|+. ..|..+...+...|++++|..++++.....+ +..... . .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 999999999999999999887432 1232 3466788999999999999999999875322 222211 1 233333
Q ss_pred HhcCCHHHHHHH--H-HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 015416 274 SDGGKLDEILEI--V-GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAA 350 (407)
Q Consensus 274 ~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (407)
...|....+.++ + .........+.........+.++...|+.++|..+++.+......... .........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~~~~ 308 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD-------NKQPARDVG 308 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc-------hhhhHHhhh
Confidence 444543333332 1 111111000111222234667788999999999999998654432000 001122233
Q ss_pred HHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 351 IASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 351 ~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
+....+-.+..++ ++.+|+.+...+...-
T Consensus 309 ~~~l~A~~~~~~g---------~~~~A~~~L~~al~~a 337 (355)
T cd05804 309 LPLAEALYAFAEG---------NYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Confidence 3334444455666 8888888877766544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.4e-09 Score=94.51 Aligned_cols=358 Identities=16% Similarity=0.107 Sum_probs=211.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
+.-|+..|..|.-+..+.|+++.+.+.|++... +..-....|+.+...|...|.-..|+.+++......+ -+++..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~---~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP---FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-QPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-CCCcch
Confidence 345788899999999999999999999999887 4555778899999999999999999999998876542 133445
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHhcC-CCCCccccccchHHHHHHHHHhcC-----------CHHHHHHHHHHHhh
Q 015416 86 ANNSVLDALCN-NGKFDEALKLFDRMKNEH-NPPKRLAVNLGSFNVMADGYCGQG-----------RFKDAIEVFRKMGE 152 (407)
Q Consensus 86 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~ 152 (407)
.+......|.. .+.+++++.+-.++.... ...+.+ ....|..++-+|...- ...++++.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 55555555544 477777777777766521 111111 1222333333332111 12333344444433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCC------
Q 015416 153 YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD-SGL------ 225 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------ 225 (407)
.+ +.|..+...+.--|+..++...|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|.
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 32 1222222222333333444444444444444432223333333333333333333333333332221 000
Q ss_pred --------------------------------------------------------------------------------
Q 015416 226 -------------------------------------------------------------------------------- 225 (407)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (407)
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence
Q ss_pred -------C--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 226 -------R--PN------LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 226 -------~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
. |+ ...|......+...++.++|...+.+.....+.....|...+..+...|.+.+|.+.|..++
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 01 12344455566667777777777777777666677777777777777777888888777777
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccc
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVK--LMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEM 368 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 368 (407)
..+ |........++.++.+.|+..-|.. ++..+.+ .+|.....++.+|.++...|
T Consensus 712 ~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr----------------~dp~n~eaW~~LG~v~k~~G----- 768 (799)
T KOG4162|consen 712 ALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR----------------LDPLNHEAWYYLGEVFKKLG----- 768 (799)
T ss_pred hcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcc-----
Confidence 653 4445566777777777776555555 4444433 44777788888999988888
Q ss_pred ccccChhhHhhHHHHhcCcccchhhhhhhhhhc
Q 015416 369 ADNANANEAASVAEAQAGKEVNLEEATAVESAS 401 (407)
Q Consensus 369 ~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~ 401 (407)
+..+|......+.. +++..++.++|
T Consensus 769 ----d~~~Aaecf~aa~q----Le~S~PV~pFs 793 (799)
T KOG4162|consen 769 ----DSKQAAECFQAALQ----LEESNPVLPFS 793 (799)
T ss_pred ----chHHHHHHHHHHHh----hccCCCccccc
Confidence 77788888776654 44556666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-10 Score=99.69 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=194.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
..+.+.|++.+|.-+|+..++. .|-+...|..|+......++-..|+..+.++++.+ |.|..+...|.-.|...
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhh
Confidence 3457899999999999999996 45589999999999999999999999999999988 55889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccc---ccchHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcC
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAV---NLGSFNVMADGYCGQGRFKDAIEVFRKMG-EYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 173 (407)
|.-..|.+.|+.-+...++.....+ +...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999988765533210000 0000000 11122223444555555553 4444578889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.+++|+..|+.++.. +| |...|+.|..++....+.++|+..|.++++ +.|+.+ +...|+-+|...|.+.+|.+.
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999984 45 578899999999999999999999999998 677755 888899999999999999999
Q ss_pred HHHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 252 FDIMVKK----------LKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 252 ~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
|-.++.. ..++...|..|=.++.-.++.|-+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9888761 11123456655556666666654433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-12 Score=77.09 Aligned_cols=50 Identities=30% Similarity=0.661 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM 59 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 59 (407)
||..+||++|++|++.|++++|.++|++|.+. |++||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~--g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR--GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888887 888888888888887753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=75.84 Aligned_cols=49 Identities=41% Similarity=0.876 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665556666666666555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-10 Score=102.97 Aligned_cols=253 Identities=11% Similarity=0.123 Sum_probs=161.5
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|...|+.||-+||..+|.-|+..|+.+.|- +|.-|.-+ ..+.+...++.++....+.++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk------------- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK------------- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC-------------
Confidence 356799999999999999999999999998 99999887 77788889999999888888766554
Q ss_pred CCchhhHHHHHHHHHhcCCHHH---HHHHHHHHHh----cCCCCCcc--------cc-ccchHHHHHHHHHhcCCHHHHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDE---ALKLFDRMKN----EHNPPKRL--------AV-NLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~----~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
.|...+|..|..+|...|+... +.+.+..+.. .|...... .| ....-...+....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5568899999999999998654 2222222211 11110000 00 0001122333344445555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 145 EVFRKMGEYRCSPDTLSFNNLIDQLCKNGM-LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
+++..+...... ..... .++-+..... +++-..+.....+ .|+..+|..++.+-...|+.+.|..++..|.+.
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555554332110 11111 2333332222 2222222222222 577888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 278 (407)
|++.+..-|..|+.+ .++..-+..++..|.. ++.|+..|+...+..+...|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 887777766666655 6677777777777776 788888888777777776444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.2e-08 Score=88.37 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
++..+++.|-..|+++.|..+++......|.-+..|..-.+.+.+.|++++|..++.++.+.+ .++.-+-..-+.-..
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHH
Confidence 334566667777777777777777777555555666677777777777777777777777753 455555545566666
Q ss_pred hcCcHHHHHHHHHHHHHhh
Q 015416 311 KEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~~ 329 (407)
++.+.++|.++..+..+.+
T Consensus 451 rAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HccccHHHHHHHHHhhhcc
Confidence 7777777777666655444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-09 Score=93.18 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=144.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
+.+.-.|++..++.-.+ .... ....+......+.+++...|+++.++.- .... -+|.......+...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~---~~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF--SPENKLERDFYQYRSYIALGQYDSVLSE---IKKS---SSPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS--TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT---SSCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh-ccCC--CchhHHHHHHHHHHHHHHcCChhHHHHH---hccC---CChhHHHHHHHHHHHhCc
Confidence 44455677777775555 2221 2122344455667777777777654432 2222 144455554444433333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
++-+.++.-+.........+. +.........++...|++++|++++... .+.......+.+|.+.++++.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~----~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGES----NEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---C----HHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred cchHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 444444444444332221110 2223333445566678888777766542 356666677777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
|.+.++.|.+. ..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.++.++...|++++|..++.
T Consensus 150 A~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888887764 223 334445444432 23577888888887653 45677777777778888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKL-DEILEIVGGILDD 292 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 292 (407)
+.....+-++.++..++.+....|+. +.+.+++.++...
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77776666777777777777777776 5566777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-07 Score=81.20 Aligned_cols=308 Identities=12% Similarity=0.133 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC----------------------CHHHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG----------------------MEEEAME 68 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~ 68 (407)
..|.+|.+.|.+.|.+++|.++|++.... ..++.-|..+.++|++-. +++-.+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 46899999999999999999999998875 224445555555554311 2333444
Q ss_pred HHHHHHhCCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-ccccchHHHHHHHHHhcC
Q 015416 69 CYNEAVGENSS---------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL-AVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 69 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 138 (407)
-|+.+....|- -+.+...|..-.. ...|+..+-...|.++++. +.|... ..-...|..+...|-..|
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 55555443321 1334444444333 3356777888888887764 222211 112346888999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHH
Q 015416 139 RFKDAIEVFRKMGEYRCSPD---TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN----------P-------DEYTYG 198 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------p-------~~~~~~ 198 (407)
+++.|..+|++..+...+.- ..+|......=.+..+++.|+++++.+...--. | +...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999987643222 235666666667788999999999887642111 1 223455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHh-
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD--DASYKFMMKALSD- 275 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~- 275 (407)
..+..--..|-++....+|+++++..+. ++.+....+..+-.+.-++++.+++++-+..+++. ...|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 5566666778899999999999986543 55555556666677778999999999988854443 4466666665543
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 276 --GGKLDEILEIVGGILDDGGIEFSEE--LQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 276 --~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.-..+.|..+|+++++. .||... +|...+..-.+.|-...|+.++++....
T Consensus 561 ygg~klEraRdLFEqaL~~--Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDG--CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred hcCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45789999999999984 455443 3333444445668888999999886543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-09 Score=88.57 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=170.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
+-+.-.|++..++.-.+ ..... ..........+.+++...|+++.++. ++.... .| .......+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~-----~l~av~~la~y~ 76 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SP-----ELQAVRLLAEYL 76 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SC-----CCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-Ch-----hHHHHHHHHHHH
Confidence 44556799999997766 32222 13344555667889999999876543 332222 22 555665565555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSF-NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
...++-+.++.-+++.......++..++ ......+...|++++|++++... .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 5445666676666665544433233333 33345566789999999887642 3567777889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
.+.++.|.+. ..|. +...|+.++.. .+.+.+|..+|+++....++++.+.+.++.++...|++++|.+++.++
T Consensus 151 ~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 151 EKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999874 3443 34445554433 346999999999999888889999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhh
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGRE-EEVVKLMEKKEREK 329 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 329 (407)
...+ +-++.+...++-+....|+. +.+.+++.++....
T Consensus 228 l~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 228 LEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 8764 56667777788888888888 66778888877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-08 Score=86.86 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=63.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
+..+.+.|++..|+..|.+++...|.|...|....-+|.+.|.+..|++-.+..++.+ ++....|..-+.++.-..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777667777777777777777777777777777777653 44555666666666667777
Q ss_pred HHHHHHHHHHHHhh
Q 015416 316 EEVVKLMEKKEREK 329 (407)
Q Consensus 316 ~~A~~~~~~~~~~~ 329 (407)
++|.+.|++..+..
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777666544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-07 Score=77.56 Aligned_cols=299 Identities=13% Similarity=0.042 Sum_probs=207.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
-.+.+=-..|+...|.++|+...+ -.|+...|.+.+..-.+-..++.|..+|++.+- +.|++.+|....+.=
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE 217 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHH
Confidence 334444456788888888887765 467888888888888888888888888888875 356778888888777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--------------------- 153 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 153 (407)
.+.|+...|.++|..+.+.-..... +...+.++...=.++..++.|.-+|.-.+..
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~---~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEE---AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 8888888888888877654221100 2223444433334444455544444433221
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH
Q 015416 154 ----------------------RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDAC 204 (407)
Q Consensus 154 ----------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~ 204 (407)
..+-|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|..+=-+|
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 11345556777777777788999999999998875 55532 1222221222
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 205 ---FEVNRVDDGATYFRKMVDSGLRPNLAVYN----RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
....+.+.+.++|+..++. ++....||. ...+...++.++..|.+++...+. ..|-..+|...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHh
Confidence 3467888899999998883 333334444 344445578899999999988876 5677788888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+++....+|++.+.-. |-+-.++...+..-...|+.+.|..+|+-.....
T Consensus 452 efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999999852 5566688888888888999999999999877544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-07 Score=82.59 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
.+..++|+.++.+++..+ |-+..+|+.-..++...| ++++++..++++.+..++ +..+|+....++.+.|
T Consensus 50 ~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcC
Confidence 344455555555555443 223334444434444444 345555555555544333 3334444433333444
Q ss_pred CH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----
Q 015416 139 RF--KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV---NR---- 209 (407)
Q Consensus 139 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~---- 209 (407)
+. ++++.+++++++.. +-+..+|+...-++...|+++++++.++++++.+.. +...|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 32 34444554554443 334445555555555555555555555555543322 333333333333222 11
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV----GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+....+..+++... +-|...|+.+...+... ++..+|...+.+.....+.+......|+..|+.
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 123444444444422 22334555555554442 223445555555444334445555555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-09 Score=94.09 Aligned_cols=225 Identities=16% Similarity=0.080 Sum_probs=159.2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
++|-...-..+...+.+.|-...|..+|++.. .|..++.+|...|+..+|..+..+.++. +|+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~ 457 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDP 457 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcc
Confidence 34444455667788888898999998888764 5677788899999888888888887773 5888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..|..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..++.+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 88888888777777777777777654321 11222233334677777777777777643 33556777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
.+.+++..|.+.|.......|.+...|+++..+|.+.|+-.+|...+.++.+-+ ..+-.++...+-...+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHH
Confidence 788888888888888777777777788888888888888888888888777754 333334444455566778888888
Q ss_pred HHHHHHHHhhH
Q 015416 320 KLMEKKEREKA 330 (407)
Q Consensus 320 ~~~~~~~~~~~ 330 (407)
+.+.++...+.
T Consensus 608 ~A~~rll~~~~ 618 (777)
T KOG1128|consen 608 KAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhh
Confidence 87777765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=85.99 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
....+..+...+...|+++.|...|+.+....|..+....++..++.++...|++++|+..|+++++..|+-+.-..++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45567777888889999999999999988853221112246788889999999999999999999887654222223566
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 89 SVLDALCNN--------GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 89 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
.+..++... |+++.|.+.|+.+....+.. ...+..+..... .... . ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~a~~~~~~----~~~~------~--------~~ 167 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS------EYAPDAKKRMDY----LRNR------L--------AG 167 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC------hhHHHHHHHHHH----HHHH------H--------HH
Confidence 666666655 77888999999988776542 222222211100 0000 0 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGV--NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
....+...|.+.|++.+|+..++.+.+... +.....+..++.++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 122466678888999999998888876421 123567888888899999999999888887753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-07 Score=93.87 Aligned_cols=316 Identities=14% Similarity=0.074 Sum_probs=206.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCcc----CC--cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chh
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVV----SD--GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAV 85 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 85 (407)
......+...|++++|..++........... +. ......+...+...|+++.|...+++.....+...+ ...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999988766421111 11 122233445667889999999999998864311111 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-C
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY----RCS--P-D 158 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~ 158 (407)
..+.+...+...|+++.|...+++................++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44566777888999999999999887543221111112235566778889999999999998876542 211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH--
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDK--GVNP--DEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLA-- 230 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-- 230 (407)
...+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+++.|...+..+... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 234556677788889999999999887642 1112 2344555677788999999999999888642 1111111
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC-cHH
Q 015416 231 VY--NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD----ASYKFMMKALSDGGKLDEILEIVGGILDD---GGIEF-SEE 300 (407)
Q Consensus 231 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~ 300 (407)
.. ...+..+...|+.+.|..++........... ..+..+..++...|++++|..+++++... .+... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11 1122445568899999999877654211111 12456778889999999999999988764 22222 223
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 301 LQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 301 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
....++.++.+.|+.++|...+.+.....
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56677889999999999999999987543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-08 Score=90.69 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=152.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
++|=...-..+...+...|-...|+.+|+++.. |..++.+|...|+..+|..+..+-++ . +|+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le-k---~~d~~ 458 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE-K---DPDPR 458 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc-C---CCcch
Confidence 344444445566667777777777777766543 55667777777777777777776665 2 55666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
.|..+++......-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +-...+|..+
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 7777776666666666676666654332 22223333444677777777777766654 4556677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
..+..+.+++..|.+.|..... ..|+ ...|+.+-.+|.+.++..+|...+.+..+.+ .-+..+|.+.+......|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 7777777777777777777766 3444 5567777777777777777777777777765 4455667677777777777
Q ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVK--KLKMDDASYKFMMKAL 273 (407)
Q Consensus 245 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 273 (407)
+++|++.+.++.. ....+..+...++...
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 7777777777766 2222444444444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.4e-08 Score=93.41 Aligned_cols=224 Identities=12% Similarity=0.144 Sum_probs=179.5
Q ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHH
Q 015416 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEV 146 (407)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 146 (407)
.+-|++.+... |-+...|...+......++.+.|.+++++++.. +.+..-.--...|.++++.-..-|.-+...++
T Consensus 1444 aeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1444 AEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred HHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34455555554 446778889999999999999999999998764 22211111344788888888888888889999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 147 FRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
|+++.+.. .....|..|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.++-+.|..++.++++. ++
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence 99998853 34567889999999999999999999999875 4456788999999999999999999999999874 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH
Q 015416 227 P--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299 (407)
Q Consensus 227 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 299 (407)
- ........++.-.+.|+.+.+..+|+..+...|.-...|+.+++.-.++|+.+.+..+|++++... +.|..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kk 1669 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKK 1669 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhH
Confidence 2 345677778888899999999999999999888888999999999999999999999999999873 44433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-07 Score=79.24 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
=++.+...|++++|.+...++.. ..|.+...+.+-+-+..+.+++++|+.+.+.-.... .+...+..-+-+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~---~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILS---IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHh---cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHH
Confidence 45667788999999999999988 456677888888888888888888886654432211 01111111223334
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
+.+..++|+..+.-.... +..+...-...+.+.|++++|+++|+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~~---------~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL---------DDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHhccccc---------chHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555566665555521111 222444445555556666666666655533
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-07 Score=75.17 Aligned_cols=273 Identities=14% Similarity=0.102 Sum_probs=205.8
Q ss_pred cCHHHHHHHH---HHHHhcCChhhHHHHHHHHHHhhCCccCCcch-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 015416 8 ADPVVYSYLM---LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV-YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 8 p~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (407)
.|+..|.++. ..|...|....|+.=+..+.+. .||-.. -..-...+.+.|.++.|..-|+..++..|+-...
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 3455554443 5678889999999989888874 455332 2335667889999999999999999887532222
Q ss_pred hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 84 AVAN------------NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 84 ~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
...+ ...+..+...|+...|+.....+++..+- +...+..-..+|...|++..|+.-++...
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW------DASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222 22345567789999999999999986433 77788889999999999999999888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHH---------HHHHHhcCChHHHHHHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT----YGLL---------MDACFEVNRVDDGATYFR 218 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~a~~~~~ 218 (407)
+.. ..++..+.-+-..+...|+...++...++.++ +.||-.. |..+ +......+++.++.+..+
T Consensus 217 kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 217 KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGE 293 (504)
T ss_pred hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 765 45677777788889999999999999999887 4566321 2211 122345678888888888
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 219 KMVDSGLRPN---LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 219 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..++...... ...+..+-.++...|++.+|++...+++...+.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8887532211 22455667778888999999999999999777789999999999999999999999999998864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-07 Score=79.86 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG-MEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
++..+-..+...+..++|+.++.++++. .|-+..+|+....++...| ++++++..++++...+ +.+..+|+..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHH
Confidence 4556666777788999999999999996 3446778888888888888 6899999999999887 5567778776
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 91 LDALCNNGKF--DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 91 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
..++.+.|+. +.++.+++++++..+. +..+|+....++...|+++++++.++++++.+ +.+...|+....+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 6666677763 6789999999988765 78899999999999999999999999999987 4677788877766
Q ss_pred HHHc---CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 169 LCKN---GML----AEAEELYGEMSDKGVNPDEYTYGLLMDACFEV----NRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 169 ~~~~---g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+.+. |.+ ++.+.+..+++... +-+...|+.+...+... +...+|...+.++.+.+ +.+......|+.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d 263 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLD 263 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHH
Confidence 6554 222 46777777777753 34577788788877763 34566888888877643 345667888888
Q ss_pred HHHh
Q 015416 238 KLVQ 241 (407)
Q Consensus 238 ~~~~ 241 (407)
.|+.
T Consensus 264 ~~~~ 267 (320)
T PLN02789 264 LLCE 267 (320)
T ss_pred HHHh
Confidence 8875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-07 Score=78.16 Aligned_cols=300 Identities=14% Similarity=0.099 Sum_probs=167.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------C--
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN--------------S-- 78 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-- 78 (407)
.+...+.+.|++++|+..|.-+... ..++...+..|..++.-.|.+.+|..+-.++.+.. .
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 3556778889999999999888774 55677788888888888888888877655443211 0
Q ss_pred -------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH-HHHHHHHhcCCHHHHHHHHHHH
Q 015416 79 -------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN-VMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 79 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
++..+..--.+|.......-.+.+|+.++.+++...+.. ...| .+.-+|.+..-++-+.+++.-.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-------~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-------IALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-------hhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 001111112233333334445777777777777654321 1222 2344556666666666666555
Q ss_pred hhCCCCCCHHHHHHHHHHHHHc--CCHH---------------------------------HHHHHHHHHHhCCCCCCHH
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKN--GMLA---------------------------------EAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~--g~~~---------------------------------~a~~~~~~~~~~~~~p~~~ 195 (407)
++. ++.++...|..+....+. |+.. .|++++-.+.+ + -+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~--IPE 286 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--H--IPE 286 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--h--ChH
Confidence 443 233333333333322221 1111 11111111110 0 011
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH--------------------------------------HHCCCCCC-HHHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKM--------------------------------------VDSGLRPN-LAVYNRLV 236 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~--------------------------------------~~~~~~~~-~~~~~~l~ 236 (407)
....++-.|.+.++..+|..+.+.+ -+.+..-| ..--.++.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 2223333444455555554444333 22111111 11223444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREE 316 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 316 (407)
..+.-..++++.+.++..+..-+..|......+.++++..|++.+|.++|-++.... +.........|+++|.+.++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~-ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE-IKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh-hhhhHHHHHHHHHHHHhcCCch
Confidence 455555667777777777777555566666778899999999999999998876542 3444445567889999999999
Q ss_pred HHHHHHHHHHHhhH
Q 015416 317 EVVKLMEKKEREKA 330 (407)
Q Consensus 317 ~A~~~~~~~~~~~~ 330 (407)
-|..++-++...+.
T Consensus 446 lAW~~~lk~~t~~e 459 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSE 459 (557)
T ss_pred HHHHHHHhcCCchh
Confidence 99998877754443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-06 Score=80.21 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=107.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.....+.+.+..++|...+.++... .+.....|...+..+...|.+++|...|.....-.|.++.+...+..++.+.|+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 4455566777888888888887764 244566888888999999999999999999999888889999999999999999
Q ss_pred HHHHHH--HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 279 LDEILE--IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 279 ~~~A~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..-|.. ++..+++.+ +.+.+.|..++..+.+.|+.++|.+.|.-...
T Consensus 734 ~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888888 999999875 78888999999999999999999999987654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-08 Score=81.97 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=69.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.....+..++..+...|+++.|...|+++....|+-+....++..++.++...|++++|...++++.+..+.... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD---AD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---hH
Confidence 355677888888889999999999999988876432222356777888889999999999999998887654211 11
Q ss_pred chHHHHHHHHHhc--------CCHHHHHHHHHHHhh
Q 015416 125 GSFNVMADGYCGQ--------GRFKDAIEVFRKMGE 152 (407)
Q Consensus 125 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 152 (407)
.++..+..++... |++++|.+.|+.+..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 1344455555443 344444444444443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-08 Score=92.66 Aligned_cols=221 Identities=9% Similarity=0.026 Sum_probs=123.9
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..|+..|...+++++|.++.+...+. .|-....|..++..+.+.++...+..+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 35566889999999999999999999977774 444667777777788888886666555 33322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
.....++.-...++..+...+. +..++..++.+|-+.|+.++|..+|+++++.. +-|..+.|.++-
T Consensus 93 ------~~~~~~~~~ve~~~~~i~~~~~-------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 93 ------FSQNLKWAIVEHICDKILLYGE-------NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred ------cccccchhHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 2222222222222222222111 22244555555555555555555555555554 344555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------------CCCCC
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS-------------------GLRPN 228 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~ 228 (407)
.|... ++++|++++.+++.. |...+++..+.+++.++... |..--
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL 222 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh
Confidence 55555 555555555555432 12222222333333332221 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..++..+-..|...++|+++..+++.+++..+.|..+..-++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344555566667777778888887777766667777777777665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-06 Score=79.17 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
|..++..| ..+++...++..+.+.+. .+-...+....+-.+...|+-++|.......+..+ ..+.+.|..++-
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl 83 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHH
Confidence 45555554 568899999999998884 55577777777777788899999999998888766 557788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
.+....++++|+++|+.+...++. |...+.-+.-.-++.|+++.....-..+.+.. +..-..|..++.++.-.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 888889999999999999887655 66778777777888888888888888877754 34455777788888888
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 173 GMLAEAEELYGEMSDKG-VNPDEYTYGLLM------DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
|++..|..+++...+.. -.|+...|.-.. ......|.++.|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 88999988888887543 245555444332 2334566666666666554432 121222333455667778888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
++|..++..++...|.+..-|..+..++.
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 88888888888866666666666666664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-06 Score=75.04 Aligned_cols=306 Identities=14% Similarity=0.136 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD---GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS-------- 79 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 79 (407)
..|..+...|-+.|+++.|..+|++..+- ..+-- ..+|..-+..-.+..+++.|+.+.+++.....+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 35788888899999999999999988774 22111 345666666667788899999988887653210
Q ss_pred -CC------CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 80 -VK------MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 80 -~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.+ .+...|..+++.--..|-++....+|++++...+. ++.........+-...-++++.++|++-+.
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 01 12334555666666778888888899988887654 333444444455556667888888888766
Q ss_pred CCCCCCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 153 YRCSPDTL-SFNNLIDQLCK---NGMLAEAEELYGEMSDKGVNPDEY--TYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 153 ~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
.--.|+.. .|+..+.-+.+ ...++.|..+|+++++ |.+|... .|......=-..|-...|+.+|+++... ++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 54445543 56666655544 2468899999999998 5665432 2222222223457788899999987653 34
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 227 PNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA---SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 227 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+.. ..|+..|.--...=-+.....+|++.++.. |+.. +.......-++.|..+.|..+|...-+......+...
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L-p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL-PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC-ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 332 367777765555545566778888888753 3333 3344455667889999999999888776444455667
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
|...-..-.+.|+- +.+++|.+.+..
T Consensus 697 W~twk~FEvrHGne----dT~keMLRikRs 722 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNE----DTYKEMLRIKRS 722 (835)
T ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHHH
Confidence 77777777888983 344555544433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.7e-08 Score=77.13 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
-+..|...|+++.+....+.+.. |. . .+...++.++++..++..++.+ +.+...|..+...|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~ 84 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYL 84 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 34567788888876554432221 11 0 1112567788888888888877 567888888988999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH-HHhcCC--HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG-YCGQGR--FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
..|+++.|...|++..+..+. +...+..+..+ +...|+ .++|.+++++..+.+ +.+...+..+...+...
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQ 157 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHc
Confidence 999999999999988887755 66677788776 466676 488999999888876 45777888888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
|++++|+..|+++.+.. +|+..-+
T Consensus 158 g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CCHHHHHHHHHHHHhhC-CCCccHH
Confidence 99999999999888753 4444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-08 Score=78.39 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=124.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
|..+ ..+...+...|+-+....+........ +.+......++....+.|++..|...|+++....++ |..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~ 135 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWE 135 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------Chh
Confidence 4555 666777777788888877777765443 445556666788888888888888888888776554 777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|+.+.-+|.+.|+++.|..-|.+..+.. +.+...++.+.-.+.-.|+++.|..++......+ .-|...-..+.....
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~ 213 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVG 213 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHh
Confidence 88888888888888888888888887764 4566677888888888888888888888887653 336666777778888
Q ss_pred hcCChHHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD 222 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~ 222 (407)
..|+++.|..+...-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 88888888887766543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-06 Score=75.28 Aligned_cols=298 Identities=16% Similarity=0.089 Sum_probs=213.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.+.+..||++.|+.+|-+.+.. .|+|...|+.-..+|...|++++|++--.+.+...|. -...|...+.++.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l---~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML---SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc---CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHHHHhHHHHHhc
Confidence 4567889999999999999985 4568889999999999999999999998888887643 356899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------------------------
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-------------------------------------- 139 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------------------------- 139 (407)
|++++|+..|.+-++..+. +...++.+..++.-...
T Consensus 84 g~~~eA~~ay~~GL~~d~~------n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS------NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc------hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999999999999887655 66677777776621100
Q ss_pred -------------HHHHHHHHHHH-----hhC-------CCCC---------CH-------------HHHHHHHHHHHHc
Q 015416 140 -------------FKDAIEVFRKM-----GEY-------RCSP---------DT-------------LSFNNLIDQLCKN 172 (407)
Q Consensus 140 -------------~~~A~~~~~~~-----~~~-------~~~~---------~~-------------~~~~~l~~~~~~~ 172 (407)
+..+.-.+... ... +..| .. .-...++++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00000000000 000 0001 00 1134566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN-------RLVGKLVQVGML 245 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~ 245 (407)
.++..|++.+....+.. -+..-++....+|...|.+..+........+.|.. ...-|+ .++.+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 78888888888888754 45556677778888888888888877777765522 222233 344466667888
Q ss_pred HHHHHHHHHHHh-cCCCCHH-------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH
Q 015416 246 DEAKSFFDIMVK-KLKMDDA-------------------------SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 299 (407)
+.|...|.+.+. ...|+.. -...-+..+.+.|++..|+..|.+++... |-+.
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da 392 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDA 392 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cchh
Confidence 999999988776 2222211 12223567888999999999999999974 7788
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHH
Q 015416 300 ELQEFVKGELSKEGREEEVVKLMEKKEREKAEA 332 (407)
Q Consensus 300 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 332 (407)
..|...+-+|.+.|.+..|++-.+...+..+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 899999999999999999999877777655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-06 Score=87.40 Aligned_cols=306 Identities=13% Similarity=0.079 Sum_probs=192.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CC--chhhHHHHHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV----KM--SAVANNSVLDA 93 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~--~~~~~~~l~~~ 93 (407)
....|++..+..+++.+... ....++.........+...|++++|..++..+...-... .+ .......+...
T Consensus 384 l~~~g~~~~l~~~l~~lp~~--~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWE--VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHhcCChHHHHHHHHhCCHH--HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456666555555554221 111233344555666678899999999998876432110 11 11222334456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC---SPD--TLSFNNLIDQ 168 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~ 168 (407)
+...|+++.|...+++......... ........+.+...+...|+++.|...+.+.....- .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 6789999999999999876422211 000123456677788899999999999988764210 111 2345667778
Q ss_pred HHHcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSD----KGVN--P-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRP--NLAVYNRLVG 237 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~----~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~ 237 (407)
+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999988764 2211 1 2334555667778889999999999887642 1112 2335556777
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVK---KLKMDDA--SY--KFMMKALSDGGKLDEILEIVGGILDDGGIEF--SEELQEFVKGE 308 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~ 308 (407)
.+...|+++.|...+..... ....... .. ...+..+...|+.+.|..++..........+ ....+..++.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 88899999999999988865 1111111 11 1122445568999999999877654211011 11123567778
Q ss_pred HhhcCcHHHHHHHHHHHHHh
Q 015416 309 LSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~ 328 (407)
+...|+.++|...+++....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 701 QILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999988764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-07 Score=85.94 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
..+...+..|.......|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++.....|.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 445667777777777777777777777777773 444 44666777777777788888877777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 270 MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..++.+.|++++|..+|+++...+ +-+...+..++.++...|+.++|...|++....
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777888888888888777632 444667777777777778888888777777653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-08 Score=74.42 Aligned_cols=109 Identities=11% Similarity=-0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
.+|++..+. ++..+..++..+...|++++|...|+.++..+ +.+...|..+..++...|++++|...|+++
T Consensus 14 ~~~~~al~~------~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSV------DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555553 23335556667777777777777777777665 446677777777777777777777777777
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
.+..+. +..++..+..++...|++++|+..|+..+...
T Consensus 85 l~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 LMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766543 55667777777777777777777777776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-07 Score=74.40 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=84.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..+-..+...|+-+....+........+. +......++....+.|++..|+..|++..... ++|...|+.+.-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 44445555555555555555554332221 33344445555566666666666666655543 455566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 247 (407)
+|.+.|+++.|..-|.+..+.. .-++..++.+.-.|.-.|+++.|..++......+ .-|..+-..|.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 6666666666666666655531 2234455555555555666666666665555432 2244555555555555666655
Q ss_pred HHHHHHH
Q 015416 248 AKSFFDI 254 (407)
Q Consensus 248 A~~~~~~ 254 (407)
|.++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 5555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-07 Score=88.35 Aligned_cols=233 Identities=13% Similarity=0.091 Sum_probs=158.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+...+..|+..+...+++++|.++.+..+...| -....|-.++..+.+.++...+.-+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P---~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK---KSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---cceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 3567888999999999999999999998887753 3444555555567777775555444
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.++.......++.-...+...+...+ -+...+..++.+|-+.|+.++|..+|+++++.. +-++.+.+.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 33444444555544444555565543 566688899999999999999999999999976 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---H--HhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK---L--VQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 277 (407)
... ++++|++++.+++..-+ +..-|+.+... + ....+++.-.++.+.+.. +..--..++..+...|...+
T Consensus 161 ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 999 99999999999886411 11111111111 1 112233333334444433 22233445556667788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
+|++++.+++.+++.. +-+.....-++.+|.
T Consensus 238 ~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 238 DWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 9999999999999864 556667777888776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-07 Score=87.37 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCCHHHHH
Q 015416 105 KLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----TLSFNNLIDQLCKNGMLAEAE 179 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~ 179 (407)
+-|++.....|. +...|-..|......++.++|.+++++.+.. +.+. ...|.++++.-..-|.-+...
T Consensus 1445 eDferlvrssPN------SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN------SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHHhcCCC------cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 344555554443 6668999999999999999999999998763 2221 236777777777778888999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL 259 (407)
Q Consensus 180 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (407)
++|+++.+. .-....|..|...|.+.+..++|.++|+.|.+. +.-...+|...+..+.++.+-+.|..++.++++..
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 999999884 223567889999999999999999999999975 34567799999999999999999999999999955
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH-HHHHH
Q 015416 260 KM--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE-AKARE 336 (407)
Q Consensus 260 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 336 (407)
|. +.......++.-.+.|+.+.+..+|+..+..+ |-....|..+++.-.++|+.+.+..+|+++...+.. .+++.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 55 56677777888889999999999999999974 667779999999999999999999999999876533 23444
Q ss_pred HHHHHHHHH
Q 015416 337 AEAAEAAKR 345 (407)
Q Consensus 337 ~~~~~~~~~ 345 (407)
....++.+.
T Consensus 1673 ffKkwLeyE 1681 (1710)
T KOG1070|consen 1673 FFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHH
Confidence 444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=72.75 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
+..+...+...|++++|...|+.+.... +.+...|..++.++...|++++|...|++.....|.++..+..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3445566666677777777776666543 335556666666777777777777777777766666666777777777777
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|++++|+..|+.++..
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-05 Score=69.57 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
.+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++..||. ++..-|.++|+--++.++.++.--...+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 357777888888888999999999999876666 67788888888775 6889999999999987888888888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSE--ELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+.++-..+..+|++++.. +++++. ++|..++.--..-|+..-+.++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999987 455544 589999988888899999888877664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-08 Score=78.41 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=109.2
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH-HhcCC--
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL-CNNGK-- 99 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-- 99 (407)
.++.++++..++...+. .|.+...|..++..|...|+++.|+..|+++...+ +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCC
Confidence 45667888888888885 56799999999999999999999999999999987 55788888888864 67777
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.++|.+++++..+.++. +..++..+...+...|++++|+..|+++.+.. +|+..-+.
T Consensus 126 ~~~A~~~l~~al~~dP~------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 126 TPQTREMIDKALALDAN------EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred cHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 59999999999998876 67799999999999999999999999999875 55554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=58.85 Aligned_cols=34 Identities=38% Similarity=0.751 Sum_probs=28.7
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELK 37 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 37 (407)
+|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888773
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-05 Score=71.99 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=144.1
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------------------
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---------------------- 79 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------- 79 (407)
+.+..++|+..++-..+ .+..+...-...+.+.|++++|+.+|+.+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HcccHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555555552211 13335555666777788888888888877544310
Q ss_pred ----CCCchhhHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCC----CC----cccccc-chHHHHHHHHHhcCCHHHH
Q 015416 80 ----VKMSAVANNS---VLDALCNNGKFDEALKLFDRMKNEHNP----PK----RLAVNL-GSFNVMADGYCGQGRFKDA 143 (407)
Q Consensus 80 ----~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~----~~~~~~-~~~~~l~~~~~~~g~~~~A 143 (407)
..| ..+|.. ....+...|++.+|+++++...+.+.. .+ .+.... ..-..|..++-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 011 123333 234566778899999888887322110 00 000000 1233456667788899999
Q ss_pred HHHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCHH----------------HH-------------------------
Q 015416 144 IEVFRKMGEYRCSPDTLS----FNNLIDQLCKNGMLA----------------EA------------------------- 178 (407)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~----------------~a------------------------- 178 (407)
..++...++.. ++|... -|.|+..-....-++ .+
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888887765 333321 122221110000000 00
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 015416 179 -EELYGEMSD-KGVNPDEYTYGLLMDACFE--VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD- 253 (407)
Q Consensus 179 -~~~~~~~~~-~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 253 (407)
.++.+.... .+..| ...+..++..+.+ .....++..++...-+....-...+...+++.....|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000000000 01112 2233333333322 12355666666666553222123455556666677777777777777
Q ss_pred -------HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 254 -------IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----GIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 254 -------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
.+.+ ....+.+...+...+.+.++.+.|..++..++... +-..-..++..++..-.+.|+-++|..+
T Consensus 402 ~~~~~~ss~~~-~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 402 FLESWKSSILE-AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred Hhhhhhhhhhh-hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3322 23334444555555666555555555555544321 1111122333344444555777777777
Q ss_pred HHHHHHh
Q 015416 322 MEKKERE 328 (407)
Q Consensus 322 ~~~~~~~ 328 (407)
++++.+.
T Consensus 481 leel~k~ 487 (652)
T KOG2376|consen 481 LEELVKF 487 (652)
T ss_pred HHHHHHh
Confidence 7777653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-06 Score=69.10 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE--- 206 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 206 (407)
-+..|+..|++++|++..... .+......=...+.+..+++-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 344566677777777666552 133333333444556666677777777776532 44555555555543
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 015416 207 -VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL-E 284 (407)
Q Consensus 207 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 284 (407)
.+.+..|.-+|+++.+. .+|++.+.+..+.++...|++++|..+++..+...+.++.+...++.+-...|...++. +
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 24466667777776653 45666666666666667777777777777776666666666666666666666554433 3
Q ss_pred HHHHHHh
Q 015416 285 IVGGILD 291 (407)
Q Consensus 285 ~~~~~~~ 291 (407)
.+.++..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 3444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-06 Score=68.98 Aligned_cols=250 Identities=12% Similarity=0.108 Sum_probs=164.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
++-+.-.|++..++..-....... .+...-.-+.++|...|++.....- +.... .+ .......+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~----~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~-----~lqAvr~~a~~ 81 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK----TDVELDVYMYRAYLALGQYQIVISE---IKEGK-AT-----PLQAVRLLAEY 81 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc----chhHHHHHHHHHHHHcccccccccc---ccccc-CC-----hHHHHHHHHHH
Confidence 344555688888877766654432 2233334456677777776543322 22211 11 33344444444
Q ss_pred HHhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 134 YCGQGRFKDAIE-VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 134 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
...-++.+.-+. +.+.+.......+......-+..|+..|++++|++...... +......=...+.+..+++-
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHH
Confidence 444555454443 34444443323333334444567889999999999887622 22233333455667888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|.+.+++|.+. .+..+.+.|..++.+ .+.+.+|.-+|+++.+..+|++.+.+....++...|++++|..+++.
T Consensus 156 A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 156 AEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99999999973 256677778777765 45789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcHHHHHHHHHHHhhcCcHHHH-HHHHHHHHH
Q 015416 289 ILDDGGIEFSEELQEFVKGELSKEGREEEV-VKLMEKKER 327 (407)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 327 (407)
++.++ .-++++...++-+-...|+..++ .+.+.++..
T Consensus 233 aL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99975 56677776666666667776554 455555553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-07 Score=85.76 Aligned_cols=147 Identities=9% Similarity=0.035 Sum_probs=120.6
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
..+.++..+..|..+..+.|.+++|..+++.+.+.. |.+...+..++.++.+.+++++|...+++.....+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~----- 152 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS----- 152 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----
Confidence 345578888899999999999999999999999876 446778888889999999999999999999888765
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015416 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL 199 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 199 (407)
+......+..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..|....|+.
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 67788888999999999999999999998743 445778888999999999999999999998764 2334444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-07 Score=85.72 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=177.5
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
..+-.+... |+.|+-.+|..+|.-|+..|+.+.|- +|..|.... .+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~--gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEIS--GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHh--cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC------
Confidence 345556666 99999999999999999999999998 999988777 6778888999998888888877665
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHH---HHHHHHHH----hhCCCCCCHHHH---------------HHHHHH
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD---AIEVFRKM----GEYRCSPDTLSF---------------NNLIDQ 168 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~----~~~~~~~~~~~~---------------~~l~~~ 168 (407)
.| .+.+|..|..+|...||+.. +.+.+..+ ...|+. ....| .+.+..
T Consensus 80 -----ep-----~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 80 -----EP-----LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred -----CC-----chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHH
Confidence 22 66699999999999999765 22212221 222321 11111 122333
Q ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNR-VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
....|.++.+++++..+-... ..|.. .++.-+..... +++-..+.+...+ .|+..++..++..-...|+.+
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 344455566655554442210 11111 12444433332 3333333333333 589999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 247 EAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 247 ~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
.|..++..|.+ +++....-|..++-+ .++..-+..+++.|... |+.|+.+++...+..+...|....+.+..+
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e~sq 295 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEEGSQ 295 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhcccccc
Confidence 99999999999 888888777777766 77888888888888775 799999999877777777776555544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-05 Score=68.21 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=114.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-------MLAEAEELYGEMSDKGVNPD-EYTYGLL 200 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~p~-~~~~~~l 200 (407)
.|+--|.+++++.+|..+.+++.- .++.-|-.-.-.+...| ...-|.+.|+..-+.+..-| .....++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 334445566666666655554431 22222222222222222 23344444444433333222 2223445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhcCCH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASY-KFMMKALSDGGKL 279 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 279 (407)
...+.-..++++++-++......- ..|...-..+.++++..|++.+|+++|-++......+..+| ..+.++|.+.+++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 555556667888888888777642 33333444588999999999999999998877333344555 5567889999999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 280 DEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+.|..++-++... .........++.-+.+.+.+--|.+.|+.++..
T Consensus 445 ~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 445 QLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9998887654321 222234556677788899988888888887743
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-06 Score=81.65 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.|..|...|+..-|...|..+|+...+. .+.+...+......|++..+++.|..+.-..-+..+ ...-...|....
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL---Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL---DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-AFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch-HHHHHhhhhhcc
Confidence 4566666666666666777777766664 223556666666666666666666666333322221 011112233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT-LSFNNLIDQLC 170 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 170 (407)
-.|...++...|+.-|+...+..|. |...|..++.+|...|++..|+++|.+....+ |+. ..-.-....-+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMEC 641 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHH
Confidence 4455566666666666666655444 66677778888888888888888887776653 332 22222223334
Q ss_pred HcCCHHHHHHHHHHHHhCC-----C-------------------------------------------CCCHHHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKG-----V-------------------------------------------NPDEYTYGLLMD 202 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~-----~-------------------------------------------~p~~~~~~~l~~ 202 (407)
..|.+.+|+..+....... . ..+...|..+..
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 4566666555554443210 0 001111111111
Q ss_pred HHHhcCChH--H----HHHHHH-HHHHCCC--------------------CCCHHHHHHHHHHHHh--------cCCHHH
Q 015416 203 ACFEVNRVD--D----GATYFR-KMVDSGL--------------------RPNLAVYNRLVGKLVQ--------VGMLDE 247 (407)
Q Consensus 203 ~~~~~g~~~--~----a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~~~~~--------~g~~~~ 247 (407)
+|.-.-..+ . ...++. +....+. ..+..+|..|+..|.+ ..+...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 111000000 0 000000 0111110 1123345555544443 122335
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 248 AKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
|...+.+.++....+..+|+.|... ...|++.-+...|-+.+..+ +.....|..+.-.+.+..+++.|...+.+...
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 6667776666555566666666655 55567777777666665542 45555677777778888889988888888875
Q ss_pred hhHH
Q 015416 328 EKAE 331 (407)
Q Consensus 328 ~~~~ 331 (407)
..+.
T Consensus 879 LdP~ 882 (1238)
T KOG1127|consen 879 LDPL 882 (1238)
T ss_pred cCch
Confidence 5444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-07 Score=68.59 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
...++..+...|++++|...|+.+...++. +...+..+..++...|++++|..+++.....+ +.+...+..+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 333444444444444444444444443322 33344444444444444444444444444332 23334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015416 167 DQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~ 187 (407)
..+...|++++|...|+...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-05 Score=74.96 Aligned_cols=284 Identities=16% Similarity=0.116 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhC------CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG------GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+...|..+.++|.+..+++-|.-++-.|....+ ..+.+...=..........|.+++|+.+|.+....
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 456688888888888888877777766643210 01111123333444455678888888888877653
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh----------
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE---------- 152 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 152 (407)
..|-..|...|.|++|.++-+.--+... ..+|......+-..++.+.|+++|++...
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiHL--------r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRIHL--------RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccceeh--------hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 3444567778889888887665333322 23677777777888888888888876421
Q ss_pred CC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 153 YR---------CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 153 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
.. -..|...|.....-+-..|+.+.|+.+|..+.+ |..++...+-.|+.++|-++-++-
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--- 964 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--- 964 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---
Confidence 11 012334455555555567777777777776654 222333333444444444333221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------cCCCCHH-------------------------HHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK---------KLKMDDA-------------------------SYKFM 269 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~-------------------------~~~~l 269 (407)
-|......|.+.|-..|++.+|..+|.+... ....+.. -+...
T Consensus 965 ---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen 965 ---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred ---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence 1334444555555555555555555554432 0000000 11222
Q ss_pred HHHHHhcCCHHHHHHHHHH---------HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 270 MKALSDGGKLDEILEIVGG---------ILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+..|-+.|.+.+|+++--+ +-+.-.-..++.....-++.+....++++|..++-...
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344455555555544211 11111223455666666777777777777777765544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-05 Score=68.58 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=55.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 248 (407)
...|.++.|+..++.++.. .+-|+.........+...++.++|.+.++++... .|+ ......+.++|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555555442 1223333344444555555555555555555542 233 33444455555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
+.+++......|.++..|..|.++|...|+..++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555555555555555555555555555544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-06 Score=65.85 Aligned_cols=191 Identities=14% Similarity=0.158 Sum_probs=141.2
Q ss_pred hcCChhhHHHHHHHHHHhhC-C-ccCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC
Q 015416 22 RDGDSDGVFRLFEELKEKLG-G-VVSDG-VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG 98 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~-~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (407)
...+.++.++++.++....+ + ..++. ..|..++-+....|+.+.|..+++.+..+-| -+...-..-.-.+-..|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhh
Confidence 45677888888888776522 2 23343 3455677777888999999999999887743 23333333333466789
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 178 (407)
++++|+++++.+++.++. |..++-.-+.+....|+.-+|++-+....+. +..|...|..+...|...|++.+|
T Consensus 101 ~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred chhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 999999999999988754 6667777777788888888898888888775 467999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVN---RVDDGATYFRKMVDS 223 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 223 (407)
.-.+++++-.. +.++..|..+...+...| +..-+.++|.+.++.
T Consensus 174 ~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 174 AFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999998642 334556666666665554 456788999998884
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-07 Score=69.69 Aligned_cols=132 Identities=19% Similarity=0.295 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
..|..++..+ ..++...+...++.+.+..++.+......-.+...+...|++++|...|+.+....++..........+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566666666 478888888888888886433222334455577788888999999999999887652211123355567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..++...|++++|+..++....... ....+...+.+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~-------~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF-------KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888889999999998866322111 4446777888899999999998888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-05 Score=62.80 Aligned_cols=188 Identities=20% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 61 GMEEEAMECYNEAVGENSS--VKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.+.++.++++..++...+. ..++.. .|..++-+....|+.+.|..+++++...-+. +..+-..-...+-..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~------S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG------SKRVGKLKAMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHh
Confidence 4566666666665532210 122222 2333444455566666777777666655432 222222223334445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++++|+++++.+++.+ |.|..++.--+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-++
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 66666666666666654 445555555555555556555666655555544 4445666666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 015416 218 RKMVDSGLRPNLAVYNRLVGKLVQVG---MLDEAKSFFDIMVK 257 (407)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 257 (407)
++++-.. |.++..+..+...+.-.| +.+.+.++|.+.++
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6665421 223334444444433322 33445555555555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.3e-07 Score=67.72 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=85.9
Q ss_pred HHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 32 LFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
.|+.+... .|.+......++..+...|++++|...|+.+...+ +.+...+..+..++...|++++|...+++..
T Consensus 5 ~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL---DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC---ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 22345566777788888888888888888888766 4467778888888888888888888888887
Q ss_pred hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 112 NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
+..+. +...+..+..+|...|++++|...|+...+.. |+...
T Consensus 79 ~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 79 ALDPD------DPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred hcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 76543 55577778888888888888888888888754 44443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-06 Score=66.91 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
-+.+.+..+.+..++..|++++..-.+.. +.+......|..+|....++..|..+++++....|... .--.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~------qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE------QYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH------HHHH
Confidence 46677777788899999999999888876 55778888999999999999999999999987765421 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------------------------C--CCCHHHHHHHHHHHHHcCCHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYR-----------------------------C--SPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------~--~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
--...+.+.+.+..|+.+...|.... . ..+..+.+.......+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 23455666777777777776664310 0 0123344555556678899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------C---------------H
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP-------------N---------------L 229 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~---------------~ 229 (407)
|.+-|+...+.+--.....|+..+.. .+.++.+.|+++..+++++|++. | .
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999999874433345577755544 57789999999999999988652 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
..+|.-...+.+.|+++.|.+.+..|.. ....|+.|...+...-.. +++.+..+-+.-++..+ |...++|..+.-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~n--PfP~ETFANlLl 318 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQN--PFPPETFANLLL 318 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcC--CCChHHHHHHHH
Confidence 1233333446678999999988888765 344577787776554433 44455555556566654 566778888888
Q ss_pred HHhhcCcHHHHHHHHHH
Q 015416 308 ELSKEGREEEVVKLMEK 324 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~ 324 (407)
.|++..-++-|..++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 89999988888877654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-05 Score=69.68 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=149.5
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHH--hhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 17 MLGFVRDG-DSDGVFRLFEELKE--KLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 17 i~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
+..+.+.| +.....+.|+++.. ..++.+|. .. +..=.-..++..+...-+.+...+..-.|+...+...+.+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~-yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPE-YL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCCh-HH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 34445555 45667788888775 22232222 11 1111122344444545555554432224444555555554
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
......-..+-..+.+..+.+ .........-.+...|+++.|+..++.++..- |.|...+......+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~--------~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~n 354 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKRG--------GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEAN 354 (484)
T ss_pred HhccccccchHHHHHHHhCcc--------chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 444333333333333332211 22244455556677888888888888877753 455666677778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
+..+|.+.++++... .|+ ......+..+|.+.|++.+|+.+++...... +.|+..|..|.++|...|+..++....
T Consensus 355 k~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 355 KAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred ChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 888888888888874 454 5666677888888888888888888887653 567778888888888888888887777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+... ..|+++.|+..+....+.
T Consensus 432 AE~~~-----------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYA-----------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHH-----------------hCCCHHHHHHHHHHHHHh
Confidence 66554 246677777777777665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=64.81 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.++..++..+.+.|++++|.+.|..+.+..++.+.....+..++.++.+.|+++.|+..|+.+....|+.+....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45666778888899999999999999886333222345677788899999999999999999887765434345667788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
..++.+.|++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88888999999999999998887654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=66.75 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
|..++..+ ..++...+...++.+....|+.+........+...+...|++++|...|+.+....+.+. + ...+...
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l--~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-L--KPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-H--HHHHHHH
Confidence 33444444 477788888888888776644323344455566777788888888888888877653321 0 2234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
|..++...|++++|+..++..... ......+...+.+|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888888887664332 234456667777788888888888877764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-08 Score=53.02 Aligned_cols=32 Identities=50% Similarity=0.947 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 154 RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-05 Score=73.87 Aligned_cols=222 Identities=16% Similarity=0.085 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
.+...|+..|-+..+..+. -...|..|+..|+...+...|.+.|++..+.+ +.+...+......|+...+++.
T Consensus 472 K~~~~al~ali~alrld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHH
Confidence 3477788888777776543 34489999999999889999999999998876 5677788899999999999999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 178 AEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 178 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
|..+.-..-+.. ...-...|....-.|...++..++...|+...... +-|...|..++.+|..+|++..|.++|.++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 998843332211 00112233445566788899999999999998754 4477799999999999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----GIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...|.+...-......-+..|++.+|+..+..++... +...-.+++..++..+.-.|-..+|..++++..+
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8555555555555666778899999999998877642 1122233444444455555666677777666543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-05 Score=68.65 Aligned_cols=295 Identities=14% Similarity=0.041 Sum_probs=169.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
....+.+..++..|+..+..++... +.+..-|..-+..+...+++++|.--.++-++..+. ....+.-...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~---pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~------~~k~~~r~~~ 125 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC---PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG------FSKGQLREGQ 125 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC---ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC------ccccccchhh
Confidence 4445566667777777777777665 334555655556666666666666655555444322 1112222233
Q ss_pred HHHhcCCHHHHHHHHH---------------HHhhCC-CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 015416 133 GYCGQGRFKDAIEVFR---------------KMGEYR-CSPDTLSFNNLI-DQLCKNGMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~---------------~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
++...++..+|...++ ...... -+|...+|..+- .++.-.|++++|.+.--..++.. ..+..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhH
Confidence 3333333333332222 111111 123334444332 34556788888877766666542 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHh----c
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-------------VYNRLVGKLVQVGMLDEAKSFFDIMVK----K 258 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 258 (407)
....-..++...++.+.+...|++.+.. .|+.. .+..=+.-..+.|++..|.+.|...+. .
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 3334445556677788888888888763 34432 122223345577888899999988887 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH-HHHHHH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE-AKAREA 337 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 337 (407)
..++...|.....+..+.|+..+|+.-.+.++..+ +.-...+..-+.++.-.++|++|++-+++....... ...+.+
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 44566677777788888899999998888887752 223334555566777788899998888887643222 222233
Q ss_pred HHH-HHHHHHHHHHHHhhcCCCcCC
Q 015416 338 EAA-EAAKRSARAAIASLIPSKFGD 361 (407)
Q Consensus 338 ~~~-~~~~~~~~~~~~~~l~~~~~~ 361 (407)
.++ .....+.+.+.+.+|+.....
T Consensus 361 ~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 361 REAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred HHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 333 333345556677777766443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=75.95 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
....|+..+...++++.|+.+|+++.+. ++.....+++.+...++-.+|++++.+.+... +.+...+..-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER------DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3455666666778888888888888875 34456667888888888888888888888665 44666666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
..|.+.++++.|+++.+++....|. +-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7788888888888888888877544 555788888888888888888888877654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-06 Score=62.02 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
.++..++..+.+.|++++|...|..+....|+.+.....+..++.++.+.|+++.|...|+.+....+.... ...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDAL 79 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHHH
Confidence 356677777788888888888888887765432333456666777888888888888888887765543210 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
..+..++.+.|++++|...++++....
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 677777788888888888888877754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00022 Score=68.50 Aligned_cols=231 Identities=15% Similarity=0.224 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..|+.+..+-.+.|...+|++-|-++ + |...|..++....+.|.|++-.+.+..+++....| .+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---d-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~-------~id 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---D-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP-------YID 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---C-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-------cch
Confidence 34555555555555555554444322 1 23344455555555555555555544444333222 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..|+-+|++.+++.+.++++ . .|+......++.-|...|.++.|.-+|... .-|..+...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 34445555555444433221 1 144444444555555555555544444322 2344455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
|++..|...-+++ .+..+|.....+|...+.+.-| +|.. ..-....-..-++..|...|-+++.+.++
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 5555554443332 1334555555555554444332 1222 22224444556666666677777777666
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 287 GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
+..+... ......|..|+-.|.+- ++++..+.++
T Consensus 1303 Ea~LGLE--RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1303 EAGLGLE--RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred Hhhhchh--HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 6655431 22333455555555443 3344333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-05 Score=65.63 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=181.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
-....+.+..++..|+..+...++. .|.++.-|..-+..+...|+++.|.--.+..+...+++ ........+++
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~---~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~---~k~~~r~~~c~ 127 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDM---CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF---SKGQLREGQCH 127 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHh---CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc---cccccchhhhh
Confidence 3445666778899999999999986 34467777778888888899999988887777665432 22444444555
Q ss_pred HhcCCHHHHHHHHH------------HHHhcCCCCCccccccchHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 95 CNNGKFDEALKLFD------------RMKNEHNPPKRLAVNLGSFNVM-ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 95 ~~~~~~~~A~~~~~------------~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
...++..+|...|+ .....-+. ..-.|....+..| ..++.-.|++++|.+.--..++.. +.+...
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 55555544444433 11111100 0000111223222 456778899999999888877764 234444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHhcCChHHHHHHHHHHHHC---CC
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT-------------YGLLMDACFEVNRVDDGATYFRKMVDS---GL 225 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 225 (407)
.-.-..++.-.++.+.+...|++.+.. .|+... +..-.+-..+.|.+..|.+.|.+.+.. +.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 333344555678899999999999874 344322 112223346789999999999999862 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
.|+...|........+.|+..+|+.--+...+..+.-...+..-..++...++|++|.+-|+...+..
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566788888889999999999999998887544445566677778888999999999999998863
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=74.18 Aligned_cols=271 Identities=12% Similarity=0.107 Sum_probs=172.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--h--cCCCCCccccccchHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSS-VKMSAVANNSVLDALCNNGKFDEALKLFDRMK--N--EHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~~~~~~~~~~~~~~ 129 (407)
.-+++.|+....+.+|+.+++.|.. +..-..+|..|..+|.-.+++++|+++...=+ . .|-... ...+...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG----EAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG----EAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc----ccccccc
Confidence 3456778888888888888877621 11112345666677777777888877653211 1 111100 2224445
Q ss_pred HHHHHHhcCCHHHHHHHHHH----HhhCCC-CCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRK----MGEYRC-SPDTLSFNNLIDQLCKNGM--------------------LAEAEELYGE 184 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 184 (407)
|...+--.|.+++|+-.-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 66666667777777654322 222220 0123345557777765542 3345555544
Q ss_pred HHh----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 185 MSD----KGVN-PDEYTYGLLMDACFEVNRVDDGATYFRKMV----DSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 185 ~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
=++ .|-. .-...|..|...|.-.|+++.|+...+.-+ +.|-+. ....+..|..++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 222 2211 123567888888888999999988776543 333222 234788899999999999999999987
Q ss_pred HHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 255 MVK------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 255 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
... .......+..+|...|.-..++++|+.++.+-+.. ....-....+..|+.++...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 665 23345667888999999999999999998765432 22344566788899999999999999998887
Q ss_pred HHHhh
Q 015416 325 KEREK 329 (407)
Q Consensus 325 ~~~~~ 329 (407)
-.+..
T Consensus 341 hl~~s 345 (639)
T KOG1130|consen 341 HLRSS 345 (639)
T ss_pred HHHHH
Confidence 76544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=71.07 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+.+...|.+...+..-...|...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444555556666666666666532 33 233355555555666666666666665555555555555566666666
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 279 LDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 279 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
++.|+.+.+++... .|.+...|..|+.+|.+.|+++.|+..+..++
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666664 24444566666666666666666666666665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=72.55 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
..|-+.|..+..+++..+-.. ..-..+...++.-|...|+.+.|..-|-+.
T Consensus 858 qmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 344444444444444433211 122334444555566666666666555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00051 Score=65.20 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=114.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
..+++.+|+....++.+..|+ .+...++.. -...+.|+.++|..+++.....++. |..+...+-.+|...+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKA--LSLFRLGKGDEALKLLEALYGLKGT------DDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHH--HHHHHhcCchhHHHHHhhhccCCCC------chHHHHHHHHHHHHHh
Confidence 446666777766666665432 111112222 2245666777777666655544333 4556666666777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR--------- 209 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--------- 209 (407)
+.++|..+|++..... |+......+..+|.+.+.+.+-.+.--++.+. ++-.+..|-++++.+...-.
T Consensus 92 ~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 7777777777766543 55555555666666666665444433333332 23334445455554443211
Q ss_pred -hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 210 -VDDGATYFRKMVDSG-LRPNLAVYNRLVGKLVQVGMLDEAKSFFDI-MVKKL-KMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 210 -~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..+.. +.+...-+.-+..+...++|.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 123445555555432 111111222223334556677777777732 22222 22333344555666666777777776
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
..+++..
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 6666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-05 Score=69.59 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=166.1
Q ss_pred CHHHHHHHH--HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------C
Q 015416 9 DPVVYSYLM--LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS-------S 79 (407)
Q Consensus 9 ~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~ 79 (407)
|..|-..++ +.|...|+.+.|.+-.+-+.. ..+|..+.+.|.+..+.+-|.-.+-.|..... .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 444444444 345677999998887776654 45899999999999888888776665543210 0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
-.++ ..-..+.-.....|-.++|..+|++-.+ |..|=..|-..|.|++|.++-+.--... =-
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr 858 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LR 858 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhcccee---hh
Confidence 0111 2222233335678999999999998764 4456667888999999998876543321 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSD----------KG---------VNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
.||......+-..++.+.|+++|++... .. -..|...|......+-..|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3566666677777888888888876321 10 1224455666666666778888888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+ |..+++..|-+|+.++|-++-++- .|..+...+.+.|-..|++.+|+.+|.++..
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 54 556777778888888888777653 3666777889999999999999998887643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0011 Score=57.27 Aligned_cols=294 Identities=14% Similarity=0.119 Sum_probs=196.2
Q ss_pred HHHHHHHHHh--cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 13 YSYLMLGFVR--DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY--FMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 13 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|..|-.++.. .||-..|.++-.+..+. +..|......|+.+- .-.|+++.|.+-|+.|.... ..-..-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHHhHH
Confidence 3444444433 46777777776665542 344666666665544 34699999999999998531 11112223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHH--HHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTL--SFNNL 165 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l 165 (407)
.|.-.-.+.|..+.|.++-+..-...+. -.+.+...+...+..|+|+.|+++++.-.... +.++.. .-..|
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL 232 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVL 232 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 3333345678899999988888776544 55688889999999999999999998765432 233432 11222
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 166 IDQLC---KNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 166 ~~~~~---~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+.+-. -.-+...|...-.+..+ +.||. ..-.....++.+.|++.++-.+++.+.+....| .++ ..|..
T Consensus 233 LtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia----~lY~~ 304 (531)
T COG3898 233 LTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA----LLYVR 304 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH----HHHHH
Confidence 22211 12356667766666665 56663 334456678899999999999999999865444 333 33444
Q ss_pred cCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhc-CcHHH
Q 015416 242 VGMLDEAKSFFDIMVK---KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKE-GREEE 317 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 317 (407)
..--+.+..-+++... ..+.+..+...+..+-...|++..|..--+..... .|....|..|++.-.-. |+-.+
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHH
Confidence 3344455555555544 44456788888999999999999999888777664 79999999998876555 99999
Q ss_pred HHHHHHHHHHhh
Q 015416 318 VVKLMEKKEREK 329 (407)
Q Consensus 318 A~~~~~~~~~~~ 329 (407)
+..++-+..+..
T Consensus 382 vR~wlAqav~AP 393 (531)
T COG3898 382 VRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHhcCC
Confidence 999998877543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-05 Score=58.52 Aligned_cols=99 Identities=9% Similarity=-0.095 Sum_probs=86.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+......+...+...|++++|..+|+.+...+ +.+..-|..|..++...|++.+|+..|.......+. ++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d------dp~ 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID------APQ 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------Cch
Confidence 44566677788889999999999999999887 557888899999999999999999999999888754 777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.+..+..++...|+.+.|.+.|+..+..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=72.22 Aligned_cols=266 Identities=14% Similarity=0.128 Sum_probs=176.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCCchhhHHH
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVG----ENSSVKMSAVANNS 89 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~ 89 (407)
.-+++.|+....+.+|+..++. |. .| ..+|..|..+|.-.+++.+|+++...=+. .+. -.-...+...
T Consensus 25 ERLck~gdcraGv~ff~aA~qv--GT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV--GT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh--cc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccc
Confidence 4578999999999999999986 42 23 34678889999999999999987643211 110 0112334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HhcCCCCCccccccchHHHHHHHHHhcCC--------------------HHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRM----KNEHNPPKRLAVNLGSFNVMADGYCGQGR--------------------FKDAIE 145 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 145 (407)
|...+--.|.+++|+-+..+- .+.|-... ...++..|...|...|+ ++.|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~----e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVL----ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHh----hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 666677778888877654432 22221110 33466667888876664 344555
Q ss_pred HHHHHhh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCChHHHHH
Q 015416 146 VFRKMGE----YRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMS----DKGVN-PDEYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 146 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
+|.+-++ .|- ...-..|..|...|.-.|+++.|+...+.-+ +.|-+ .....+..+..++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5544222 110 0112356667777777889999987765432 33322 224678889999999999999999
Q ss_pred HHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 216 YFRKMVD----SGL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK------KLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 216 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.|+.... .|- ........+|...|.-...+++|+.++.+-+. ...-...++.+|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 9987652 221 12344777899999999999999999987765 223356788999999999999999988
Q ss_pred HHHHHHh
Q 015416 285 IVGGILD 291 (407)
Q Consensus 285 ~~~~~~~ 291 (407)
+.+..++
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.002 Score=62.28 Aligned_cols=282 Identities=14% Similarity=0.154 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHhcCChhhHH-----------HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 11 VVYSYLMLGFVRDGDSDGVF-----------RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
..|-.+.+.+.+..|.+--. ++.+++.+..-....|+...+....++...+-+.+-++++++..-.++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~ 1016 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1016 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc
Confidence 34555566666666654333 3445555541112346677788889999999999999999998865544
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR----- 154 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 154 (407)
+..+...-+.|+-...+. +.....+..+++-.-+.+ .+.......+-+++|..+|++.-..+
T Consensus 1017 Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~------------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1017 FSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP------------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch------------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 444445555555544444 334455555555432211 12233444444555555554431100
Q ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 155 ----------------CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 155 ----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
--..+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++.
T Consensus 1084 Lie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred HHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0124557788888888888888887766432 256778888888889999988888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 015416 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS 298 (407)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 298 (407)
.+.+..-.|. +=..|+-+|++.++..+-+.++ ..|+......++.-|...|.++.|.-+|..+
T Consensus 1158 MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1158 MARKKVREPY--IDSELIFAYAKTNRLTELEEFI------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred HHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 7776544443 4456788888888877655443 3467777788888888888888887776644
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 299 EELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 299 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..|..|+..+...|.+..|...-++....+
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 236778888888899998888777765433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00021 Score=66.33 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=104.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
....|.+|+.+++.+..... -+.-|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|
T Consensus 744 ~akew~kai~ildniqdqk~-------~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT-------ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc-------ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 34445555555554444322 12234555566666666666666554321 123345556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
..|.++-.+... .......|..-..-+-..|++.+|+++|-.+. .|+ ..++.|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 666655544432 22233444444444555666666666554332 232 2355666666666666665543
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
... .-..|...+..-|-..|+...|...|-++-+ |..-+..|...+-|++|.++-+.
T Consensus 877 h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 877 HGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred Chh--hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 221 1234666777778888888888887765533 44455667777888888776543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-05 Score=58.11 Aligned_cols=95 Identities=8% Similarity=-0.076 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
...+...+...|++++|..+|+.+.... +-+..-|..|+.++-..|++++|+..|.......+.++..+..+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344445556666666666666666532 223445556666666666666666666666665555666666666666666
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|+.+.|.+.|+.++..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=56.52 Aligned_cols=95 Identities=25% Similarity=0.291 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+..+...+...|++++|...++.+.+. .+.+..++..++.++...+++++|.+.|+...... +.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHH
Confidence 445566666677777777777777663 23344566667777777777777777777776654 333456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 015416 93 ALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (407)
++...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0006 Score=57.09 Aligned_cols=188 Identities=10% Similarity=-0.018 Sum_probs=100.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+...+..+...|++++|+..|+.+....|.-+.-....-.++.++.+.++++.|...|++.++..|..+. ...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH
Confidence 34444455666667788888888888888776543222333456677778888888888888888877665444 333
Q ss_pred hHHHHHHHHHhcC---------------C---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCGQG---------------R---FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++-.++.++...+ + ..+|+..|+.+++.- |++.- ..+|...+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y-------------a~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY-------------TTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh-------------HHHHHHHHHHHHH
Confidence 4444443321111 2 234556666666542 34321 2222222222221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
. .-. .-..+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+
T Consensus 173 ~---la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 R---LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred H---HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 000 1113455566666666666666666643 11122335555666666666666666655544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-05 Score=55.67 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|...++......+.+..++..++..+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444444555555555555544421 12223444444444444555555555544444333333444444444444455
Q ss_pred HHHHHHHHHHHH
Q 015416 279 LDEILEIVGGIL 290 (407)
Q Consensus 279 ~~~A~~~~~~~~ 290 (407)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=58.21 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
.|+++.|+.+++++.+..+. +...+..++.+|.+.|++++|+.++++ .... +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777774332 344555567777777777777777776 2221 223344445577777777777777
Q ss_pred HHHHH
Q 015416 320 KLMEK 324 (407)
Q Consensus 320 ~~~~~ 324 (407)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-05 Score=66.32 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ-VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+...+.++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56666666666666777777777776432 2234455555554333 445555777777777766667777777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSE---ELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..|+.+.|..+|++.+.. +++.. .+|...++.-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777664 22222 3666666666666777777766666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00082 Score=51.80 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=115.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+..+.=+++....-..+-.+ ..|+......|..+....|+..+|...|++....-+..|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333344444444433333333 567888888899999999999999999999887555667888888999999999999
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLK--MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 247 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
.|...++++.+-.| -++.+...+.+.+...|++..|...|+.+... -|...........+.++|+.+++..-+..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999888221 13455677888999999999999999999885 56677666677778899988887755544
Q ss_pred HH
Q 015416 325 KE 326 (407)
Q Consensus 325 ~~ 326 (407)
+-
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 43
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-06 Score=57.50 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=49.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|+++.|+.+++++.+..+. .++...+..++.+|.+.|++++|+.++++ ...+ +.+......++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CCCHHHHHHHHHHHHHhCCHHH
Confidence 46777777777777775221 11344455567777777777777777766 3322 2233444455677777777777
Q ss_pred HHHHHHH
Q 015416 103 ALKLFDR 109 (407)
Q Consensus 103 A~~~~~~ 109 (407)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-05 Score=66.61 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (407)
..+...|+++.|+..|+++++.. +.+...|..++.+|...|++++|+..+++++...+.+...|..++.+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666666532 23445566666666666666666666666666555566666666666666666666
Q ss_pred HHHHHHHHHhc
Q 015416 282 ILEIVGGILDD 292 (407)
Q Consensus 282 A~~~~~~~~~~ 292 (407)
|+..|++++..
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-05 Score=67.99 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=54.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
...+...|+++.|+++|+++++. .+.+...|..+..+|...|++++|+..+++++..+ +.+...|..++.+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH
Confidence 34445556666666666666654 23355556666666666666666666666666554 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 015416 97 NGKFDEALKLFDRMKNEHN 115 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~ 115 (407)
.|++++|+..|++.++..+
T Consensus 83 lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAP 101 (356)
T ss_pred hCCHHHHHHHHHHHHHhCC
Confidence 6666666666666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-05 Score=64.80 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|...+..+.+.|++++|+..|+.+.+.+|+.+-.+.++..++.+|...|++++|+..|+.+....|+-+....++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34466666666778999999999999999754433234678889999999999999999999999877655556777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
++.++...|+.+.|..+|+.+++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 888898999999999999999988655
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00018 Score=62.05 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKE 38 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 38 (407)
.|......|...|++++|.+.|.....
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 466666667777777777777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.8e-05 Score=58.82 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..+..++..+...|++++|+..|++++...++.......+..++.++.+.|++++|...+.++....+. +...+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHH
Confidence 344555555555555555555555555433211111234555555555555555555555555554332 33345
Q ss_pred HHHHHHHHhcCC--------------HHHHHHHHHHHhhCC
Q 015416 128 NVMADGYCGQGR--------------FKDAIEVFRKMGEYR 154 (407)
Q Consensus 128 ~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~ 154 (407)
..++.+|...|+ +++|.+++++....+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 555555555554 677777777777775
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.3e-05 Score=59.28 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
....+..++..+...|++++|...|+++.+..+.+.. ....+..++.++.+.|++++|...+.+........ ...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence 4556777788888888888888888888876544321 23477888888888888888888888887765443 4556
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 163 NNLIDQLCKNGM--------------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 163 ~~l~~~~~~~g~--------------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
..++.++...|+ +++|.+++++.... .|+. |..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 666777777666 57788888888763 3332 5555555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=61.31 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015416 26 SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALK 105 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 105 (407)
+..+...+..+.+.. +..-....|..++..+...|++++|+..|++++...++......++..+..++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTT-SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555543220 2222355677788888888999999999988876643222234578888888888899999999
Q ss_pred HHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 106 LFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
.++++....+. ....+..+...+.
T Consensus 94 ~~~~Al~~~~~------~~~~~~~la~i~~ 117 (168)
T CHL00033 94 YYFQALERNPF------LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHhCcC------cHHHHHHHHHHHH
Confidence 98888876433 3345556666665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0012 Score=55.27 Aligned_cols=185 Identities=8% Similarity=0.020 Sum_probs=121.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+-.....+...|++++|...|+.+....+.+.. -....-.++.+|.+.++++.|...+++.++....-...-+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 333444556677899999999999999998776421 22344678889999999999999999998764333333322
Q ss_pred HHHHHHH--HcC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 164 NLIDQLC--KNG---------------M---LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 164 ~l~~~~~--~~g---------------~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
....+.+ ..+ + ...|+..|+.+++. -|+.. -..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH
Confidence 2222222 111 2 23566777777763 34431 123344333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
. ...-..++..|.+.|.+..|..-++.+++. .+....+...++.+|...|..++|......+.
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011225778899999999999999999983 34456778889999999999999998877654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=67.84 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=80.3
Q ss_pred CccCCcchHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC--------CHHHHHHHHH
Q 015416 42 GVVSDGVVYGSLMKGYFMK-----GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG--------KFDEALKLFD 108 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~ 108 (407)
..+.+...|...+++.... ++...|+.+|+++++.+|+ ....|..+..++.... +...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456777888877775432 2367889999999988743 4556655544443221 1223333333
Q ss_pred HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
+.......+. +..+|..+...+...|++++|...+++.+..+ |+...|..++..+...|++++|...|+++..
T Consensus 409 ~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3222211111 33456556555556677777777777766654 5666666667777777777777777766665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0082 Score=57.43 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=146.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMK--GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG 98 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (407)
...+++.+|+....++.++.| +. .|..++. .+.+.|+.++|..+++...... ..|..+...+-.+|...+
T Consensus 20 ld~~qfkkal~~~~kllkk~P----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHh
Confidence 456789999999999888632 22 2333333 4568899999998888776655 337888888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-M--- 174 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--- 174 (407)
+.++|..+|++.....| +......+..+|.+-+.+.+-.+.--++-+. .+.+...+-.+++.+...- .
T Consensus 92 ~~d~~~~~Ye~~~~~~P-------~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYP-------SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 99999999999987654 3335556677888877776654444444332 2334444444555544321 1
Q ss_pred ------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 175 ------LAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFR-KMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 175 ------~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..-|...++.+.+.+ .--+..-...-...+...|++++|+.++. ...+.-..-+...-+.-+..+...++|.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 234556666666543 21222233334445567788999999984 4444333334445556677788888999
Q ss_pred HHHHHHHHHHhcCCCC
Q 015416 247 EAKSFFDIMVKKLKMD 262 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~ 262 (407)
+..++-.++....+.|
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9888888888855555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00038 Score=56.76 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
....+...|++.+|...|+.+....|+.+--..+...++.++.+.|+++.|...|++.+...|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4455667888888888888888875554445566677888888888888888888888877654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=57.56 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+...|++++|+..|+......++......+|..+..++...|++++|+..+++++... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 45577888888899999999999999987522211123588999999999999999999999999876 334566777
Q ss_pred HHHHHH-------hcCCHHHHHHHHHH
Q 015416 90 VLDALC-------NNGKFDEALKLFDR 109 (407)
Q Consensus 90 l~~~~~-------~~~~~~~A~~~~~~ 109 (407)
+..++. ..|+++.|...+++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 777777 66776655544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=46.11 Aligned_cols=33 Identities=30% Similarity=0.664 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD 46 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 46 (407)
+||++|.+|++.|++++|.++|++|.+. |+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER--GIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCC
Confidence 5677777777777777777777777766 66665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00028 Score=51.42 Aligned_cols=100 Identities=27% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
...+..++-..|+.++|+.+|++.+..+..-..-...+..+...+...|++++|..+|++.....+... . +......
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~--~~~l~~f 80 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-L--NAALRVF 80 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-c--cHHHHHH
Confidence 344556666777777777777777776522111234555666777777777777777777766543311 1 2223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
+..++...|+.++|+.++-....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 44466677777777777655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00019 Score=59.60 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=90.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
.-+.+.+++.+|+..|.++++.+ |.|.+-|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------yskay~RLG~A~ 159 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------YSKAYGRLGLAY 159 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH------HHHHHHHHHHHH
Confidence 44567788888888888888876 557777888888888888888888888888877654 556888888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHhCCCCCCH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL-CKNGMLA---EAEELYGEMSDKGVNPDE 194 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~~p~~ 194 (407)
...|++++|++.|++.+... |+..+|-.=+... .+.+... .+..-++.....|..|+.
T Consensus 160 ~~~gk~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HccCcHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 88888888888888888754 6666665444433 3333333 333444444444444553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.8e-06 Score=45.06 Aligned_cols=33 Identities=52% Similarity=0.975 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0054 Score=55.31 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+|..++..-.+..-+..|..+|.++.+.+..+ ++.++++++..|| .++..-|.++|+.-++. ..-++.-....+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 55555665556666666666666665554444 4445555555444 34555666666554432 122233334445555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++-..+..+|++++..++.|+. .+|..++..-..-|+...+.++-++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5556666666666666655444332 3566666655566666665555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0005 Score=50.14 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM---DDASYKFMMKALSDG 276 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 276 (407)
.++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+|+......|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 333444444444444444444443322 113333444444444444444444444443222 222223333344444
Q ss_pred CCHHHHHHHHHH
Q 015416 277 GKLDEILEIVGG 288 (407)
Q Consensus 277 g~~~~A~~~~~~ 288 (407)
|+.++|++.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.2e-06 Score=44.66 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS 45 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 45 (407)
.+|+.+|.+|++.|+++.|.++|+.|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~--gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ--GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 46777777777777777777777777776 6655
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=44.52 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVN 191 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 191 (407)
+|+.++.+|++.|+++.|..+|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00031 Score=60.62 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 015416 165 LIDQLCKN-GMLAEAEELYGEMSD----KGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR-----PNLA-V 231 (407)
Q Consensus 165 l~~~~~~~-g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~ 231 (407)
+...|... |++++|++.|+++.+ .+ .+. ..++..+...+.+.|++++|.++|+++...... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33445455 666666666666543 12 111 234556666677777777777777776643211 1111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMD--DASYKFMMKALSD--GGKLDEILEIVGGIL 290 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 290 (407)
+...+-++...|++..|...|++.... +..+ ......|+.+|-. ...++.++.-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333444555667777777777776652 2222 2344555555543 334555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=61.29 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN-NGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
+|..+++..-+.+..+.|..+|.++++.+ ..+..+|......-.. .++.+.|.++|+...+.-+. +...|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~ 73 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHH
Confidence 34455555555555555555555555332 2223333333333222 34444455555555544222 34445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT---LSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
...++.+...|+.+.|..+|++.+.. ++++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555443 22111 2455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=64.02 Aligned_cols=124 Identities=17% Similarity=0.268 Sum_probs=97.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
+-+......+++.+....+.+.+..++.+..... .....-..+..++++.|...|..+.++.++..=...|+-||..
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~---~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP---NCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc---ccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4466667777887877888888888888877652 2222234466789999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
++|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888766666667776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00039 Score=64.76 Aligned_cols=134 Identities=12% Similarity=-0.021 Sum_probs=71.0
Q ss_pred CCchhhHHHHHHHHHhc--C---CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC--------CHHHHHHHH
Q 015416 81 KMSAVANNSVLDALCNN--G---KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG--------RFKDAIEVF 147 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~ 147 (407)
+.+...|...+++.... + +...|..+|+++++..|. ....+..+..+|.... ++..+.+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 56677888877765432 2 377899999999988655 4445555444443221 112222222
Q ss_pred HHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 148 RKMGEY-RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 148 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.+.... ..+.+...|..+...+...|++++|...++++... .|+...|..+...+...|+.++|.+.|++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222221 11223344554544444555555555555555553 24555555555555555555555555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.7e-05 Score=51.07 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNE 113 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 113 (407)
+.+|..++..+...|++++|+..|+++++.+ +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455556666666666666666666666554 334555666666666666 466666666655543
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00034 Score=58.46 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC---CHHHH
Q 015416 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG---RFKDA 143 (407)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 143 (407)
..-++.-+..+ |-|...|..|..+|...|+++.|...|.+..+..++ +...+..+..++..+. ...++
T Consensus 142 ~a~Le~~L~~n---P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 142 IARLETHLQQN---PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHhC---CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHH
Confidence 33444555565 557888888888888888888888888888887654 5666777776665443 35678
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
..+|++++..+ +.|+.+...|...+...|++.+|...|+.|++.
T Consensus 213 ~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 213 RALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888888876 566777788888888889999999999888875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00026 Score=60.22 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=122.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH----HHHHhcCCCCCccccccchHHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF----DRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
...+..+|+..+.+.+..-.+......++..+..+.+..|.+++++..- +-..+.. ....-..+|..+..++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~----ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE----DSDFLLEAYLNLARSN 93 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3445555555555544332111122334444555556666655544321 1111110 0000122455555555
Q ss_pred HhcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEY-RCSP---DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-----PDEYTYGLLMDACF 205 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~ 205 (407)
-+.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+.+.+.-.. .....+..+...|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 5555566665554443332 1111 1123344667777777888888888877652111 12456777888888
Q ss_pred hcCChHHHHHHHHHHHH----CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD----SGLRPNLA------VYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKM-DDASYKFM 269 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~~l 269 (407)
...++++|.-+..+..+ .++. |.. +...|.-++...|....|.+.-++..+ +..+ .......+
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 88888887776665543 1221 111 223344566677888777777777665 2222 34456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015416 270 MKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+.|...|+.+.|..-|+.+..
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHH
Confidence 7788888888888877776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=60.25 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=99.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
..-+.+.+++.+|+..|.++++..+. +...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence 34467899999999999999998766 78889999999999999999999999998875 344679999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChH---HHHHHHHHHHHCCCCCCH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC-FEVNRVD---DGATYFRKMVDSGLRPNL 229 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~~~~~ 229 (407)
..|++.+|++.|++.++ +.|+-.+|-.=+... .+.+... .+..-++-....|..|+.
T Consensus 161 ~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred ccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999999999999998 678766766555544 3334433 333334433344443553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00058 Score=57.08 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG---MLAEA 178 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 178 (407)
....-++.-+..+|. |...|..|...|...|+++.|..-|....+.. +++...+..+..++.... ...++
T Consensus 140 ~l~a~Le~~L~~nP~------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 140 ALIARLETHLQQNPG------DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHhCCC------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 333444444555544 78899999999999999999999999998875 577777777777765543 45688
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
..+|++++..+ +.+..+...+...+...|++.+|...|+.|++..
T Consensus 213 ~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 213 RALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 89999999864 3467788888899999999999999999999863
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0045 Score=47.88 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLS 161 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 161 (407)
+......|..++...|++.+|...|++....-... +......+.++....+++..|...++++.+... ..+..+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 33333444444445555555555554444321111 334444444444444555555554444433210 001112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
.-.+.+.+...|.+.+|+.-|+.+.. .-|+..........+.+.|+.+++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHH
Confidence 22334444445555555555555444 233333333333333444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0012 Score=53.82 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-----CSPDTLS 161 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 161 (407)
.+.++.++.-.|.+.-....+.++++..++. ++.....|++.-.+.||.+.|..+|++..+.. +.....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~-----~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-----EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 3444555555555555555555555544332 45555556666666666666666655443321 1122222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.......|.-.+++..|...|.+....+ +.++...|.-.-+....|+..+|.+.++.+.+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233334444555555555555555432 22344444444444455566666666666655
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00025 Score=63.51 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=78.2
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR--CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
+......+++.+....+++.+..++.+..... ...-..|..++++.|...|..+.++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44455566666666667777777777765531 1111223457777777777777777777777777777777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777555555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.1e-05 Score=49.03 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++..+...|++++|...|+.+++..|.+...+..++.++...|++++|+.+|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555666666666666666666666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0031 Score=51.44 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
..+...+..+...|++.+|+..|+.+....|.-+....+...++.++.+.|+++.|...+++.++..|..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3444556666777888888888888877665444445566667777778888888888888877766543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.4e-05 Score=48.00 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
++..+...|++++|+..|+++++.. |-+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445556666666666666666554 3355566666666666666666666666665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00056 Score=57.76 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHhhcCcH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMD---DASYKFMMKALSDGGKLDEILEIVGGILDDGGI-EFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 315 (407)
.+.|++++|...|+.+++..|.+ +.++..++.+|...|++++|+..|+.+...+.. +.....+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34455555555555555533332 234455555555555555555555555543211 11222333344445555555
Q ss_pred HHHHHHHHHHHH
Q 015416 316 EEVVKLMEKKER 327 (407)
Q Consensus 316 ~~A~~~~~~~~~ 327 (407)
++|...++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.1e-05 Score=48.60 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=39.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|..+|+++....|.+...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777888887777777777777777778888888888888887777775
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.4e-05 Score=48.44 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG-KLDEILEIVGGILD 291 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 291 (407)
..+|..++..+...|++++|+..|.+.++..|.+...|..++.+|...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544445555555555555555 45555555555554
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00045 Score=48.53 Aligned_cols=76 Identities=11% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNG--------MLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
.|.-+...+++...-.+|+.+...|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 666666666666655432 122344555555555555555555555
Q ss_pred HHHHH
Q 015416 201 MDACF 205 (407)
Q Consensus 201 ~~~~~ 205 (407)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00055 Score=48.11 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGV-NPDEYTYGLLMDACFEVN--------RVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
...|.-+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. ++-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877643 2446778889999888999999999
Q ss_pred HHHHHHHh
Q 015416 234 RLVGKLVQ 241 (407)
Q Consensus 234 ~l~~~~~~ 241 (407)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.016 Score=51.00 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCCH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLCK---NGML 175 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~ 175 (407)
+..+.+.++...-..|..+ +..+...++-+|....+|+..+++++.+.... +......-...+-++.+ .|+.
T Consensus 121 ~l~~~L~~i~~rLd~~~~l--s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELL--SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHHhhCCHhhc--ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 3344445555443333323 33455567778999999999999999998751 11122233344556666 8999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-H
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFE---------VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM-L 245 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 245 (407)
++|+.++..+......+++.+|..++..|-. ...+++|+..|.+..+. .|+...--+++..+...|. .
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 9999999996665567888899988887742 22377888888888763 4665533334444444443 2
Q ss_pred H---HHHHHH---HHHH-h----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 246 D---EAKSFF---DIMV-K----KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 246 ~---~A~~~~---~~~~-~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+ +..++- ..+. + ....+...+.+++.++.-.|++++|.+.+++|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 222222 1111 1 23446677788888889999999999999998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0011 Score=54.79 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|+.-+..+ ..|++..|...|...++.+|+-.-.+..+.-|+.++...|+++.|..+|..+.+..|..+.-...+.-
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34687777665 67889999999999999877766677788889999999999999999999999887766666788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
|..+..+.|+.+.|...|+++.+..|.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0033 Score=47.94 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
...-+...|++++|..+|+-+.--.+.++.-+..|..++...+++++|+..|..+.... .-++..+...+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCC
Confidence 34445566777777777776666555566666666666666777777777776655542 2333334445666777777
Q ss_pred HHHHHHHHHHHHHh
Q 015416 315 EEEVVKLMEKKERE 328 (407)
Q Consensus 315 ~~~A~~~~~~~~~~ 328 (407)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777666653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=47.31 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
|++++|+.+|+++.... |.+...+..++.+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444443332 2233333334444444444444444444333
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.9e-05 Score=39.78 Aligned_cols=28 Identities=43% Similarity=0.950 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.021 Score=49.06 Aligned_cols=234 Identities=13% Similarity=0.075 Sum_probs=149.6
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHH----HHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN----EAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
....+.++|+..+.+...+..+......+|..+..+..+.|.+++++..-- -+..... -..--.+|..+.+++.+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-s~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-SDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456778888888887776522222234567777888888888887765432 2222110 01123456677777777
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHH
Q 015416 97 NGKFDEALKLFDRMKNEH-NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-----PDTLSFNNLIDQLC 170 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 170 (407)
.-++.+++.+-..-.... ..+.. ..-....++..++...+.++++++.|+...+.... ....++-.|...|.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~--~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQ--LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCccc--ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 777888887776655431 11111 02234455777888888999999999887653211 12347888999999
Q ss_pred HcCCHHHHHHHHHHHHh----CCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSD----KGVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPN-LAVYNRLV 236 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~----~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~ 236 (407)
+..++++|.-+..++.+ .++..- ......+.-++...|.+..|.+..++..+ .|-.+. ......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999888777653 222211 11233455667788888888888877653 443322 23556778
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..|...|+.+.|+.-|+....
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 889999999999988887765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=8e-05 Score=39.76 Aligned_cols=29 Identities=41% Similarity=0.832 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 189 (407)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0034 Score=48.18 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEF 304 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~ 304 (407)
+...++..+...|+++.|..+++.+....|.+...|..++.+|...|+..+|+++|+++... .|++|++.+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 55667778888999999999999999988889999999999999999999999998877543 477888776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0074 Score=46.09 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
...--+...|++++|..+|+-+.-.+ .-+..-|..|+.++-..+++++|...|.......+.|+..+.....+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34445567899999999999888654 33566778888888888999999999988877556677778888999999999
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
.+.|...|..+...
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.043 Score=48.67 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..|...+....+...++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+--...++.++.-....+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566777777777888888888888777 4567778888887766 46778888888887776666666667777778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
...++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+.+.+.
T Consensus 477 i~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 8888888888888876664 2333 568888888777888888888777776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0084 Score=45.98 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS-----DKGVNPDEYT 196 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 196 (407)
+...++..+...|+++.|..+...+.... |.+...|..++.+|...|+...|.+.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666666666666666666654 4555666666666666666666666666553 2456665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=51.52 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCG-----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 123 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
+..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34455555555543 35666666777777778888888888888776643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.04 Score=51.56 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
|.+..|..|.......-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 55556666665555555555555555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00052 Score=45.43 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..|.+.+++++|.++++.+....|.++..+...+.++...|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777777666666666666777777777777777777777664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0059 Score=45.52 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
..|+ -.....+.|++++|.+.|+.+..+.|..+-...+.-.|+.+|.+.++++.|+..+++.++.+|.. |+ .-|...
T Consensus 12 ~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-p~-vdYa~Y 88 (142)
T PF13512_consen 12 ELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-PN-VDYAYY 88 (142)
T ss_pred HHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CC-ccHHHH
Confidence 3344 34455688999999999999999866655566777889999999999999999999999988753 33 334444
Q ss_pred HHHHH
Q 015416 91 LDALC 95 (407)
Q Consensus 91 ~~~~~ 95 (407)
+.+++
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.024 Score=49.98 Aligned_cols=176 Identities=15% Similarity=0.032 Sum_probs=117.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG---QGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
+..+...++-+|....+++..+++++.+...-.. + +.-...+-...+.++.+ .|+.++|++++..+......++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~-~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC-D-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc-c-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3344456667799999999999999998865211 0 11133344566777778 89999999999996665567899
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---HHHH-H
Q 015416 160 LSFNNLIDQLCK---------NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD----DGATYF---RKMV-D 222 (407)
Q Consensus 160 ~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~ 222 (407)
.+|..++..|-. ....++|+..|.+.-+. .|+..+=..++..+...|... +..++- ..+. +
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 999988887753 22467888888887763 466544333444444444322 222222 2211 3
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 223 SGL---RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 223 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
.|. ..+...+..++.+..-.|++++|.+..+++....+|.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 332 3455677788899999999999999999999864443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00053 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
+++.++..|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00082 Score=44.48 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|.+.++++.|+++++.+... .|.++..|...+.++...|++++|...|+++++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444443 2224444444444444444444444444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.021 Score=51.20 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=118.0
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 015416 160 LSF--NNLIDQLCKN-----GMLAEAEELYGEMSD-KGVNPD-EYTYGLLMDACFE---------VNRVDDGATYFRKMV 221 (407)
Q Consensus 160 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 221 (407)
..| ..++.+.... ...+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 234678889999882 224555 4455555444432 223456777888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+.+ +.|..+...++.+....++++.|...|++.....|....+|......+...|+.++|.+.+++.++.........+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 865 5578888888888888889999999999999977888889999999999999999999999998887544444455
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
....++.|+..+ .++|++++-+-
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhc
Confidence 556666776655 67777776553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.052 Score=44.67 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-----LAVYNRL 235 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l 235 (407)
+.+.++..+.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777778889999999999999876667788888999999999999999999998775322333 3333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 303 (407)
...|.-.+++..|...+.++....+.++...+.-.-+..-.|+...|++.++.++.. .|...+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhh
Confidence 455677889999999999998877778888888888888889999999999999886 45554444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.005 Score=50.95 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=45.1
Q ss_pred hcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLR--PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK---MDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 280 (407)
+.|++..|...|...++.... -....+..|+.++...|++++|..+|..+.+..| .-+.++..+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543110 1122445555555555555555555555555222 23445555555555555555
Q ss_pred HHHHHHHHHHhcC
Q 015416 281 EILEIVGGILDDG 293 (407)
Q Consensus 281 ~A~~~~~~~~~~~ 293 (407)
+|...|+++.+.+
T Consensus 233 ~A~atl~qv~k~Y 245 (262)
T COG1729 233 EACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 5555555555553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00076 Score=45.33 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHh---hCCccCC-cchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEK---LGGVVSD-GVVYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
+|+.+...|...|++++|++.|++..+. .+...|+ ..+++.++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555432 1111111 3344445555555555555555555443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.08 Score=46.24 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
.+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-..+... +-++.-|...+.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHH
Confidence 35556667777888888887776554 2 47888999999999999999887776432 235678889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
..|...+|..+..++ ++ ..-+..|.+.|.+.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~------~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888762 22 23455678889998888765444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.008 Score=52.48 Aligned_cols=96 Identities=15% Similarity=-0.044 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
..++..|..+|.+.+++..|+....+.+...++|......-+.+|...|+++.|+..|+++.+.. |.+..+...++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 34677888889999999999999999999888899999999999999999999999999999863 4555566666555
Q ss_pred HhhcCcHHHH-HHHHHHHH
Q 015416 309 LSKEGREEEV-VKLMEKKE 326 (407)
Q Consensus 309 ~~~~g~~~~A-~~~~~~~~ 326 (407)
-.+..+..+. .++|..|-
T Consensus 335 ~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444333322 44444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.085 Score=45.42 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred chHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFK---DAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.++..++.+|...+..+ +|..+++.+.... +....++..-+..+.+.++.+.+.+.+.+|+.. +......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 35666777777766544 3445555554432 223445545566666677788888888888764 222333444444
Q ss_pred HHHHh--cCChHHHHHHHHHHHHCCCCCCH
Q 015416 202 DACFE--VNRVDDGATYFRKMVDSGLRPNL 229 (407)
Q Consensus 202 ~~~~~--~g~~~~a~~~~~~~~~~~~~~~~ 229 (407)
..+.. ......+...+..++...+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44421 12234455555555533334433
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.031 Score=51.87 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKG-VNPDE-----YTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
.++....=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34555556789999999998877532 22211 233333433333 45678899999999974 56665554
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH-H
Q 015416 234 -RLVGKLVQVGMLDEAKSFFDIMVK----KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK-G 307 (407)
Q Consensus 234 -~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~ 307 (407)
.-++.+...|++++|++.|+.... -.......+.-++.++...++|++|...|..+.+.. ..+..+|..+. .
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 446677889999999999997664 122245567778888999999999999999999974 55666776654 4
Q ss_pred HHhhcCcH-------HHHHHHHHHHHHhhHH
Q 015416 308 ELSKEGRE-------EEVVKLMEKKEREKAE 331 (407)
Q Consensus 308 ~~~~~g~~-------~~A~~~~~~~~~~~~~ 331 (407)
++...|+. ++|.+++.+++....+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 56678888 9999999999865443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=51.80 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDK-----GVNP---------DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV 231 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 231 (407)
...|.+.|++..|...|++++.. +..+ -..++..+..+|.+.+++..|+....+.++.+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45667777777777777775431 1111 13467888999999999999999999999865 667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE-ILEIVGGILDD 292 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 292 (407)
...-+++|...|+++.|...|+++.+..|.|..+-..++.+-.+.....+ ..++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999777777777777766666555444 47788888775
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0069 Score=48.35 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc----------------CCHH
Q 015416 83 SAVANNSVLDALCNN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ----------------GRFK 141 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~ 141 (407)
+..+|..++..|.+. |..+-....+..|.+-|..- |..+|+.|++++=+. .+-+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k-----DL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK-----DLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc-----cHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 455555555555432 45555555666666666554 556666666655431 1223
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
-|++++++|...|+.||..++..++..+.+
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 344445555555555555555544444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.071 Score=43.42 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..|.....+|....++++|...+.+..+.... +...|. ....++.|.-+.+++.+.. --...|+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfh-------AAKayEqaamLake~~kls--Evvdl~eK 96 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHH
Confidence 34555566777778888888877776643211 111111 1223455555555555431 22234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD---SGL--RPNLAVYNRLVGKL 239 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~ 239 (407)
-...|...|.++.|-..+++.-+. ...-++++|+++|++... .+- .--...+......+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 566677777777666666654321 112233444444444331 110 01122344455566
Q ss_pred HhcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHhh
Q 015416 240 VQVGMLDEAKSFFDIMVK------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI--EFSEELQEFVKGELSK 311 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 311 (407)
.+...+++|-..|.+-.. ..+..-..|...+..+....++..|.+.++.-.+..++ +.+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 666777776665554433 12222345677777777788888999888875554322 23344566666665 5
Q ss_pred cCcHHHHHHHHH
Q 015416 312 EGREEEVVKLME 323 (407)
Q Consensus 312 ~g~~~~A~~~~~ 323 (407)
.|+.+++..++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777666544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.08 Score=43.68 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=106.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
|-...|+.-+.. .+.|++++|.+.|+.+..+.|..+-...+.-.++.++.+.++++.|+..+++.+...|+ .||. .|
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~-dY 109 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNA-DY 109 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCCh-hH
Confidence 334445555444 47788999999999988876665556667777888888889999999999888887764 3333 34
Q ss_pred HHHHHHHHhc-------CC---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015416 88 NSVLDALCNN-------GK---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 88 ~~l~~~~~~~-------~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (407)
...+.+++.- .+ ...|..-|+.++..-|... ..++ |...+..+...
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~d-------------------A~~~i~~~~d~---- 165 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPD-------------------AKARIVKLNDA---- 165 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-chhh-------------------HHHHHHHHHHH----
Confidence 4444443321 12 2345555555555544321 1111 11111111000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD---EYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
=...=..+..-|.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+..
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 0000013456677777777777777777764 2211 33455566677777777777665555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=52.81 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=51.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.+...|+.++.+|...|++++|+..|+++++.+|+...-..+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678888888888888888888888888876431111145788888888888888888888888775
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.1 Score=43.00 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+..-+..-.+.|++++|...|+.+..+.|.-+....+...++.++.+.++++.|+..+++.....|..
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 33344445677888888888888887776555555666667777788888888888888887776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.082 Score=43.07 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHH------HHHHHHHHcCCHHHHHHHHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYG------SLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
..|..-..+|....++++|...+.+..+ +...+...|. ..+-..-....+.++..+|+++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~---~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK---GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3466667788888999999998888876 3333443332 2222233334455555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=53.13 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL----AVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777777663 4442 2467777777777777777777777665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.025 Score=41.04 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHhhcC
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE---LQEFVKGELSKEG 313 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 313 (407)
-++...|+.+.|++.|.+.+...|..+..|+.-.+++.-.|+.++|++-++++++..|-. ... .|..-+..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456778899999999988888777788889999999999999999999888888875433 332 2333345677889
Q ss_pred cHHHHHHHHHHHHHhhHHHHH
Q 015416 314 REEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 314 ~~~~A~~~~~~~~~~~~~~~~ 334 (407)
+.+.|..-|+...+.|.+...
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999988888877765543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.032 Score=41.68 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..+..-+....+.|+++.|++.|+.+..+-|.-+-...+...++.+|.+.++++.|...+++.++..|.... ..|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-----vdY 85 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-----VDY 85 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-----ccH
Confidence 344455666678899999999999999887654555667778899999999999999999999999876532 245
Q ss_pred HHHHHHHHh
Q 015416 128 NVMADGYCG 136 (407)
Q Consensus 128 ~~l~~~~~~ 136 (407)
...+.+++.
T Consensus 86 a~Y~~gL~~ 94 (142)
T PF13512_consen 86 AYYMRGLSY 94 (142)
T ss_pred HHHHHHHHH
Confidence 445555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.19 Score=44.01 Aligned_cols=251 Identities=16% Similarity=0.184 Sum_probs=166.9
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYG----SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
.-.|+++.|.+-|+.|.. |+.+-. .|.-..-+.|..+.|.++-+..-...| .-...+...+...+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~-------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap---~l~WA~~AtLe~r~~ 200 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP---QLPWAARATLEARCA 200 (531)
T ss_pred HhcCchHHHHHHHHHHhc-------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc---CCchHHHHHHHHHHh
Confidence 457999999999999987 344433 333334577999999999999988763 346788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHc
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC---GQGRFKDAIEVFRKMGEYRCSPDTLS-FNNLIDQLCKN 172 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 172 (407)
.|+|+.|+++++.-.......... -...-..|+.+-. -.-+...|...-.+..+. .|+..- --.-..++.+.
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~--aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d 276 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDV--AERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRD 276 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhh--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhc
Confidence 999999999999876654322110 0011122222211 123455666665555554 466542 23345788999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD-SGLRPN-LAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
|+..++-.+++.+-+....|+ .+ .+-.+.+.|+. +..-+++... ..++|| ......+..+-...|++..|..
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred cchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999999988644444 32 22234455553 3333333331 114454 4566777888888999988877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 015416 251 FFDIMVKKLKMDDASYKFMMKALSD-GGKLDEILEIVGGILDD 292 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 292 (407)
--+.... ..|....|..|.+.--- .|+-.++...+.+.++.
T Consensus 351 ~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6666554 56777788888877654 59999999999998874
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.03 Score=47.67 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGE-NSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
|++.+|-..++++.+ ..|.|..++...=.+|.-.|+...-...+++.+.. ++++|-.......+.-++...|-+++
T Consensus 117 g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 445555555555555 24445555555555555556655555555555543 33333333333344444555566666
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 149 (407)
|.+.-++..+.+.. |..+..++...+--.|++.++.++..+
T Consensus 194 AEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66655555554332 444555555555555565555555444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=42.03 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMM 270 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 270 (407)
|..++..++.++++.|+++....+++..-. +.++... ..+. ... ...|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 345666677777777777776666655432 2221100 0000 111 4567888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.+|+..|++..|+++++...+.++++.+..++..|..-
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99988899999999999888888888888888877763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.21 Score=45.12 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=98.3
Q ss_pred chH--HHHHHHHHHc-----CCHHHHHHHHHHHH---hCCCCCCCchhhHHHHHHHHHhc---------CCHHHHHHHHH
Q 015416 48 VVY--GSLMKGYFMK-----GMEEEAMECYNEAV---GENSSVKMSAVANNSVLDALCNN---------GKFDEALKLFD 108 (407)
Q Consensus 48 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~ 108 (407)
..| ..++++.... ...+.|+.+|.++. ..+ |.....|..+..++... ....+|.+.-+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 556 5555554432 23567888999998 444 22355555555444322 23456667777
Q ss_pred HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
+..+.++. |..+...+..++...++++.|...|++....+ |....+|....-.+.-.|+.++|.+.+++..+.
T Consensus 329 rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 329 YVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77776654 67777777777778888888888888888765 334456666666677788888888888887663
Q ss_pred CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHH
Q 015416 189 GVNPDEY---TYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 189 ~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
.|... .....+..|+. ..++.++++|-+
T Consensus 402 --sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 402 --EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred --CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 44422 22222334443 345566666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.41 Score=44.38 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.|+.||.---...+.+.+..++..+... .|.----|......-.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLSYL 120 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 3444554444444445556666666653 2223334555555556666677777777766654 355566665555
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 92 DALC-NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 92 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.-+. ..|+.+.....|+.+...-... + .+...|...+.--..++++.....+|+++++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~d--F-~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLD--F-LSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccc--h-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4332 3456666666666665432110 0 03335555666666666666666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.29 Score=45.54 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL------SFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
.+..++....-.||-+.+++.+.+..+.+--..+. .|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 56778888888999999999998876643112221 34555544443 35678899999999874 56655
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 196 TYG-LLMDACFEVNRVDDGATYFRKMVDS--GL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 196 ~~~-~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
.|. .-...+...|++++|++.|+..... .. ......+.-++..+.-.++|++|...|..+.+....+...|..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 544 3446677889999999999986631 11 1233466778888999999999999999999966666666655554
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHh
Q 015416 272 AL-SDGGKL-------DEILEIVGGILD 291 (407)
Q Consensus 272 ~~-~~~g~~-------~~A~~~~~~~~~ 291 (407)
+| ...|+. ++|.++|.++-.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 457877 888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.26 Score=41.59 Aligned_cols=152 Identities=12% Similarity=0.032 Sum_probs=101.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
-.......|++.+|..+|....... +-+......++.+|...|+.+.|..++..+-..--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445667899999999999888753 223556677889999999999999999887642111111121222344444444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 318 (407)
..+...+-.+.-. .|.|...-..+...+...|+.+.|.+.+-.++.++.-.-+......++..+.-.|..+.+
T Consensus 219 ~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444433 566888888999999999999999998888877654455666777777777666644433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.5 Score=44.29 Aligned_cols=259 Identities=19% Similarity=0.207 Sum_probs=125.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHH---------HHHHhhCCccCCcchHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFE---------ELKEKLGGVVSDGVVYGSLMKGYFMKGME--EEAMECYNEAV 74 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 74 (407)
+.|....+.+-+--|...|.+++|.++-- .+... ..+.--++..=.+|.+..+. -+.+.-++++.
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~----ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME----ALEALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH----HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555666667778888887765321 11100 01122233333444444332 23344445555
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH-----HHHHHHHhcCCHHHHHHHHHH
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN-----VMADGYCGQGRFKDAIEVFRK 149 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~ 149 (407)
+.+ -.|+.. .+...|+-.|.+.+|.++|.+- |.... -...|+ -+..-|...|..++-..+.++
T Consensus 628 ~rg--e~P~~i---LlA~~~Ay~gKF~EAAklFk~~---G~enR----AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 628 KRG--ETPNDL---LLADVFAYQGKFHEAAKLFKRS---GHENR----ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred hcC--CCchHH---HHHHHHHhhhhHHHHHHHHHHc---Cchhh----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 555 335543 3455677778888888888653 21110 000111 112233334443333333322
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG------EMSDKGVN---PDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
-.+.. .+..--.+....+...|+.++|..+.- -+.+.+-+ .+..+...+...+.+...+.-|-++|..|
T Consensus 696 RA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 696 RADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 11100 011111223444555677666665431 12222112 23344444445555566677777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD----------DASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
-+ ...+++.....++|++|..+-++..+-.+.- ..-|.-.-.+|.+.|+-.+|.++++++.
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 53 2246677788889999988888766521111 1123333456666666677776666654
Q ss_pred h
Q 015416 291 D 291 (407)
Q Consensus 291 ~ 291 (407)
.
T Consensus 845 n 845 (1081)
T KOG1538|consen 845 N 845 (1081)
T ss_pred h
Confidence 4
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.14 Score=43.74 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE----YTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 212 (407)
.|++.+|-..++++++. .|.|...++..=.+|...|+.+.-...+++.+.. -.||. .....+..++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444444455555442 3445555555555555555555555555555432 11222 122222233344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|++.-++..+.+ +.|......+.+.+.-.|+..++.++..+-....... ...|-...-.+...+.++.|+.+|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 555555555432 2344444445555555555555555554443311110 11122233334444555555555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.26 Score=40.66 Aligned_cols=199 Identities=21% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD-AC 204 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~ 204 (407)
+......+...+++..+...+...... ........+..+...+...+.+..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333444444444444444444443321 112233333444444444444444444444444322111 111111111 44
Q ss_pred HhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGL--RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 281 (407)
...|+++.+...+.+...... ......+......+...++.+.+...+.......+. ....+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 455555555555555433110 011222233333344455555555555555554333 34555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+...+....... +.....+..+...+...|..+++...+.+....
T Consensus 221 a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 221 ALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555531 111223333333333444455555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.73 Score=43.98 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
.+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .+.-|.....+|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACL 755 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHH
Confidence 344445555556666666666655543 3566666666677777777766555544332 2445666667777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~------l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG------LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC------hH----HHHHHHHHhccHHHHHHHHH
Confidence 77777777777665422 11 34456667777777665433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0087 Score=34.84 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
+..+...|...|++++|.++|+++++..|.++..+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444444444444444444444444444444444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.47 Score=40.87 Aligned_cols=162 Identities=9% Similarity=0.130 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLA---EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
++..++.+|...+..+ +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|+.. +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5677888888877655 5666666665432 222455656677777789999999999999975 2212334444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHh-cCCCCHH-HHHH-HH-HH--HHhcCC------HHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 238 KL---VQVGMLDEAKSFFDIMVK-KLKMDDA-SYKF-MM-KA--LSDGGK------LDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 238 ~~---~~~g~~~~A~~~~~~~~~-~~~~~~~-~~~~-l~-~~--~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.+ .... ...|...+..+.. ...|... .... ++ .. ....++ .+....++..+....+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 4443 3455555555554 4444443 1111 11 11 112211 444555555444443445555443
Q ss_pred HHH-------HHHHhhcCcHHHHHHHHHHH
Q 015416 303 EFV-------KGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 303 ~~l-------~~~~~~~g~~~~A~~~~~~~ 325 (407)
..+ +....+.+++++|..+++-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333 34567889999999998854
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0084 Score=34.91 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
+|..+...|.+.|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44555555555666666666666655554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.4 Score=39.48 Aligned_cols=224 Identities=19% Similarity=0.142 Sum_probs=150.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHhc
Q 015416 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE--HNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.+....+...+.......+. ......+......+...+.+..+...+...... ... ....+..+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPN-SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN------LAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc------hHHHHHHHHHHHHHH
Confidence 45566666666666654311 012456666777777888888888877776642 111 444566677777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLID-QLCKNGMLAEAEELYGEMSDKGV--NPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
+++..+...+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 78888888888877654222 222223333 67788888888888888855221 122344444455567788888899
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 215 TYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+....... +. ....+..+...+...++++.|...+.......+.....+..+...+...+.++.+...+.+....
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888742 23 36678888888888889999999999888855554556666666666777799999999888876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.1 Score=38.04 Aligned_cols=96 Identities=20% Similarity=0.100 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
..+....|+.+.|++.|.+.+..- |.....||.-..++.-.|+.++|+.-+.+.++........ -..+|..-...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--acqa~vQRg~l 124 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--ACQAFVQRGLL 124 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--HHHHHHHHHHH
Confidence 345667788888888888887764 5567788888888888888888888888777654322110 12244445566
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 015416 134 YCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~ 154 (407)
|...|+-+.|..-|+..-+.|
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 777788888888787777666
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.21 Score=45.85 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 56 GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
...-.++++.+.++...-.-. |.+| ..-.+.++.-+.+.|..+.|+++...-. .-.....
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------------~rFeLAl 329 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-----------------HRFELAL 329 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------------HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------------HHhHHHH
Confidence 344456666666555411100 1122 3335666666667777777766543321 1234555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 015416 136 GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
+.|+++.|.++.++. ++...|..|.....+.|+++-|++.|.+..+ |..|+-.|...|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 667777666544322 3566777777777777777777777766542 4456666666777666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
+.+.....| -++....++.-.|+.++..+++..
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655544 134444445555666666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.55 Score=42.71 Aligned_cols=57 Identities=19% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVS-DGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
.+|.-.-+..+.+.-+++-.+..+. .| .+..|..|.. -......++.++|++.++.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei----~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI----NPDCADAYILLAE--EEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH
Confidence 4555556777777777777777764 22 2333333322 23455788888888877644
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.36 Score=38.73 Aligned_cols=183 Identities=14% Similarity=0.053 Sum_probs=100.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
|-..|-+..|.--|.+.....|. -+.+||.|.--+...|+++.|.+.|+...+.+. ....+...-.-++.-.|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGG 147 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecC
Confidence 33445555666666666665544 455888888888888999999999988888752 22223323333344567
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGV-NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR-LVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~ 251 (407)
++.-|.+-+.+.-+.+. .|-...|.-+. -..-++.+|..-+.+--+ ..+..-|.. ++..|...=.. ..+
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~---e~l 218 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISE---ETL 218 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccH---HHH
Confidence 88888776666655431 12122222111 122344555443333222 123333332 23333322122 223
Q ss_pred HHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 252 FDIMVKKLKM-------DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 252 ~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++++...... -..+|..+...+...|+.++|..+|+-.+..
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333332221 2457888888889999999999999887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.1 Score=38.58 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
|..++.+++.++++.|+.+....+++..-. +.++...- .+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467888999999999999999999877643 22221000 000 1113345677777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Q 015416 238 KLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSD 275 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 275 (407)
+|+..|++..|+++++.+.+ +.+.+..+|..|+.-+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777 555556677776665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.67 Score=41.54 Aligned_cols=226 Identities=13% Similarity=0.134 Sum_probs=130.6
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 44 VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
+-.+.+|.--...+...++-++|++........ .|+ ....+...|....+-+.....|+.....-
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----sps--L~~~lse~yel~nd~e~v~~~fdk~~q~L--------- 363 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQDL--------- 363 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCc--hheeHHHHHhhcccHHHHhhhHHHHHHHH---------
Confidence 334555555555566677777777776655443 222 11223344444555555555555443210
Q ss_pred cchHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHH
Q 015416 124 LGSFNVMADGYC---GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGL 199 (407)
Q Consensus 124 ~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ 199 (407)
..--..+..=+ .-|+++...+++-+-.. .=..+|...+....+..-.+.|..+|-++.+.+ +.++...+++
T Consensus 364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A 438 (660)
T COG5107 364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA 438 (660)
T ss_pred -HHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence 00000000000 01223222222211111 123456666777677777888888888888777 5667777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhc
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD--DASYKFMMKALSDG 276 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 276 (407)
++..++ .|+..-|..+|+--+.. -||.. -.+..+..+...++-+.|..+|+..+.....+ ...|..++..-..-
T Consensus 439 ~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 439 FIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred HHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 877764 46777788888765543 23433 33455666677888888888888776644444 56788888888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|+...+..+=+++...
T Consensus 516 G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 516 GSLNNVYSLEERFREL 531 (660)
T ss_pred cchHHHHhHHHHHHHH
Confidence 8888888887777775
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.59 Score=42.52 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
.++.-.-+..+++.-++.-.++++.+|+ -...|..|. --......++.++|++..+.+... +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pd---CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~---------l---- 234 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPD---CADAYILLA--EEEASTIVEAEELLRQAVKAGEAS---------L---- 234 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhh---hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHh---------h----
Confidence 3444455667777777777777775522 233333332 223455788888888877654211 0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCh
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~ 210 (407)
.+.......-..++.+......+-..+-..+..++-+.|+.++|++.+++|.+.... ........|+.++...+.+
T Consensus 235 ---g~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 235 ---GKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ---chhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 000000000001111111111122222233455555666666666666666543211 1233555666666666666
Q ss_pred HHHHHHHHHHHH
Q 015416 211 DDGATYFRKMVD 222 (407)
Q Consensus 211 ~~a~~~~~~~~~ 222 (407)
.++..++.+..+
T Consensus 312 ad~q~lL~kYdD 323 (539)
T PF04184_consen 312 ADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhcc
Confidence 666666666544
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.67 Score=43.50 Aligned_cols=253 Identities=16% Similarity=0.172 Sum_probs=136.2
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHH---------HHHhCCCCCCCchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcC
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYN---------EAVGENSSVKMSAVANNSVLDALCNNGK--FDEALKLFDRMKNEH 114 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~ 114 (407)
....+.+-+..|...|.+++|.++-- .+-.. ..+.-.++..-.+|.+..+ +-+.+.-++++.+.|
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~----ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME----ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH----HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445555566777788877765421 10000 0112223334445555444 334444556677777
Q ss_pred CCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHh--
Q 015416 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-----LIDQLCKNGMLAEAEELYGEMSD-- 187 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~-- 187 (407)
..|+ -..+...++-.|.+.+|-++|.+--..+ .-...|+- ...-+...|..++-..+.++-.+
T Consensus 631 e~P~--------~iLlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 631 ETPN--------DLLLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred CCch--------HHHHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 6552 2246677888889999998887653321 11122221 23334445555444444433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFR------KMVDSGLR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 258 (407)
.+++-. ......+...|+.++|..+.- -+.+-+-+ .+..+...+...+.+...+.-|-++|.+|-.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD- 775 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD- 775 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-
Confidence 111111 123344556677777665532 11121111 2334555666666677788888888888754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH-----------HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE-----------LQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...+++.....++|++|..+-++.-+- .++.. -+...-.+|.++|+..+|..+++++..
T Consensus 776 -------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 -------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345677788899999999988765442 22221 122223467777888888877777753
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.68 Score=40.56 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... +-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677888887777765552 36788888888899988888877665432 113366778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
..|+..+|..+..++ .+..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888888888772 1245567778888888887765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.59 Score=39.52 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
....|++..|...|..+.... +-+......++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555555544 2234444455555555555555555555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.93 Score=40.73 Aligned_cols=262 Identities=11% Similarity=0.130 Sum_probs=153.4
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchH------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH-
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVY------GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD- 92 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~- 92 (407)
+.+++++.+|.++|.++.+. ...++..+ +.++++|.. .+.+.....+....+.. + ...|..+..
T Consensus 16 Lqkq~~~~esEkifskI~~e---~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~--~s~~l~LF~~ 86 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE---KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G--KSAYLPLFKA 86 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH---hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C--CchHHHHHHH
Confidence 45789999999999999885 33343333 346666654 56666666666665543 2 233444433
Q ss_pred -HHHhcCCHHHHHHHHHHHHhc--CCCCCccc-------cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCC
Q 015416 93 -ALCNNGKFDEALKLFDRMKNE--HNPPKRLA-------VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR----CSPD 158 (407)
Q Consensus 93 -~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 158 (407)
.+.+.+++.+|.+.+..-... +..+.-+. .+-..-+..+.++...|++.++..+++++...= ..-+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 356889999999998877655 22221110 012223566788899999999999998886532 3367
Q ss_pred HHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcC--ChHHHHH
Q 015416 159 TLSFNNLIDQLCKNG---------------MLAEAEELYGEMSDK------GVNPDEYTYGLLMDACFEVN--RVDDGAT 215 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g--~~~~a~~ 215 (407)
..+|+.++-.+.+.= -++.+.-+.+++... .+-|....+..++....-.. +..--.+
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 888888655554321 123333344444321 23344444555554443221 2222333
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 216 YFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
+++.-...-+.|+.. +...|...+.+ +.+++..+.+.+... ..--..+|..++....+.++..+|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444333334556544 44445555554 566666666555441 1113457888888899999999999988876
Q ss_pred Hhc
Q 015416 290 LDD 292 (407)
Q Consensus 290 ~~~ 292 (407)
...
T Consensus 325 ~~l 327 (549)
T PF07079_consen 325 KIL 327 (549)
T ss_pred Hhc
Confidence 653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.3 Score=42.18 Aligned_cols=280 Identities=16% Similarity=0.112 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
...|..+.+.||+-...++++.--.. ....--...|+.++..++....|+.|.++|...... ...+.+
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~~~ec 831 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------ENQIEC 831 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HhHHHH
Confidence 34567788889998888777642111 001112357888888888888888888888654321 234555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+.+..++++-..+-..+.+ +....-.+..++.+.|--++|.+.|-+... |. ..+..|...+
T Consensus 832 ly~le~f~~LE~la~~Lpe----------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPE----------DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCc----------ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 5555555554444433322 223444455555555555555544433211 11 1223344444
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH----HHHHH
Q 015416 174 MLAEAEELYGEMSDKGVN-----------PDEYTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPNL----AVYNR 234 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~----~~~~~ 234 (407)
+|.+|.++-+...-..+. .+.. ..--|..+.+.|..-.|-+++.+|.+ .+.++-. .+..+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 444444433322100000 0000 01123344444444444444444432 1211110 01111
Q ss_pred H-HHHH----------HhcCCHHHHHHHHHHHHh--------cCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 235 L-VGKL----------VQVGMLDEAKSFFDIMVK--------KLKMDDASYKFM--MKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 235 l-~~~~----------~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
+ +.-+ -..|..++|..+++.... ..--...+|..+ .+--...|.++.|++.--.+..-.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 1101 123445555544433222 011123444444 444556789999988766665544
Q ss_pred CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 294 GIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
.+-|..++|..++-+-+....+.-.-+.|-++
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 57788889988876655554444444444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.53 Score=40.75 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM--K----GMEEEAMECYNEAVGENS 78 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~ 78 (407)
++.+.+++.|.+. |...+..+|-+....... . ....+|..+|+.|.+..|
T Consensus 79 ~~~~~~y~~L~~~--gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEA--GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHh--ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 3445556666665 555555444432222222 1 123455666666665553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.063 Score=42.49 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
..+..++..|.+.|+.+.|++.|.++.....+...-...+..+++.....+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888888888888888888887765333334556677788888888888888887776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.61 Score=37.52 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=111.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
..|-..|-+.-|.--|.+.+... |.-+.+||-+.--+...|+++.|.+.|+...+.++.. + .+...-.-.+
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-----~-Ya~lNRgi~~ 143 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-----N-YAHLNRGIAL 143 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-----h-HHHhccceee
Confidence 34445566677777777777765 3346788888888899999999999999999987653 2 2222223344
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTL--SFNNLIDQLCKNGMLAEAEELY-GEMSDKGVNPDEYTYGLLMDACFEVNRVD 211 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 211 (407)
.-.|++.-|.+-|...-+.+ +.|+. .|-.+.. ..-++.+|..-+ ++... .|..-|...+-.|. .|++.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc
Confidence 55789999988777776654 22332 3333322 234566665443 33433 23333433333322 12221
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 212 DGATYFRKMVDSGLRPN-------LAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...+++++.... ..+ ..+|--|++.+...|+.++|..+|+-.+.
T Consensus 215 -~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 -EETLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 123344444321 111 34788889999999999999999998876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.66 Score=42.71 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=97.9
Q ss_pred HHHHhcCChhhHHHHHH--HHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 18 LGFVRDGDSDGVFRLFE--ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
....-.|+++.+.++.. ++.. .+| ....+.++..+-+.|.++.|+++-.. .. .-.....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~---~rFeLAl 329 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIP--KDQGQSIARFLEKKGYPELALQFVTD-----------PD---HRFELAL 329 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G----HHHHHHHHHHHHHTT-HHHHHHHSS------------HH---HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----------hH---HHhHHHH
Confidence 44556789999877775 2221 233 44578888888899999999887432 21 1233456
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
+.|+++.|.++.++.. +...|..|.....++|+++-|++.|.+... |..|+-.|.-.|+.
T Consensus 330 ~lg~L~~A~~~a~~~~-----------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD-----------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HCT-HHHHHHHCCCCS-----------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred hcCCHHHHHHHHHhcC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 7888888877654322 445788888888888888888888877654 34566667778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
+...++.+.....|- ++....++...|+.++..+++.+.
T Consensus 390 ~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777777777776652 455566666778877777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.11 Score=41.10 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH-
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS- 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~- 89 (407)
..+..+...|.+.||.+.|++.|.++.+...+...-...+..+++.....+++..+.....++...-.. ..+....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 457889999999999999999999998863233334567788899999999999999998887654211 111221111
Q ss_pred -H--HHHHHhcCCHHHHHHHHHHHHh
Q 015416 90 -V--LDALCNNGKFDEALKLFDRMKN 112 (407)
Q Consensus 90 -l--~~~~~~~~~~~~A~~~~~~~~~ 112 (407)
. +-.+...+++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1224456888888888876543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.22 Score=39.36 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=37.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDD-----ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
...|++++|..-|...+...|+.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-+.+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 344444444444444444333321 223333344444555555555554444432 2222233333444555555
Q ss_pred HHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKE 326 (407)
Q Consensus 315 ~~~A~~~~~~~~ 326 (407)
+++|++-|+++.
T Consensus 184 ~eealeDyKki~ 195 (271)
T KOG4234|consen 184 YEEALEDYKKIL 195 (271)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=43.09 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFV 305 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l 305 (407)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+. -|+.|..+.....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 366778888999999999999999999988889999999999999999999999999888763 3777887776665
Q ss_pred HHH
Q 015416 306 KGE 308 (407)
Q Consensus 306 ~~~ 308 (407)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.77 Score=36.32 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKM---DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
+...+...+++++|...++........ ...+-..|.+.....|.+++|+..+...... .........-++.+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHH
Confidence 445667788888888888777652111 1223445666777788888888888776553 3444455566778888
Q ss_pred cCcHHHHHHHHHHHHHhhHHHHHH
Q 015416 312 EGREEEVVKLMEKKEREKAEAKAR 335 (407)
Q Consensus 312 ~g~~~~A~~~~~~~~~~~~~~~~~ 335 (407)
.|+.++|..-|++..........+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred cCchHHHHHHHHHHHHccCChHHH
Confidence 888888888888877665333333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.54 Score=34.52 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=79.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++..-+. .|. ..+|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 356667777777766653 24445555555554444444444444444321 111 12233333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 251 FFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.+-.+ ..+.......+..+...|+-+.-.+++..+.+. -.++++....++.+|.+.|+..++.+++.+.-+.|.
T Consensus 78 C~~~~----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33221 124445566677888899999999999888763 278888889999999999999999999999988886
Q ss_pred HHH
Q 015416 331 EAK 333 (407)
Q Consensus 331 ~~~ 333 (407)
+..
T Consensus 152 kEA 154 (161)
T PF09205_consen 152 KEA 154 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.71 Score=35.70 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHH--HHHHHH
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNL--IDQLCK 171 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~ 171 (407)
.+.+..++|+.-|..+.+.|...- ...............|+...|...|+++-.-...|... -..-| .-.+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y----pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY----PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 445556666666666665554320 22233444555566666666666666665433222222 11111 112345
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.|.+++.....+-+-..+.+--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 566666666666555444333344455555566666666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.7 Score=39.24 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHh-cCCC----CHHHHHHHHH--HHHh
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLV----GKLVQ---VGMLDEAKSFFDIMVK-KLKM----DDASYKFMMK--ALSD 275 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~-~~~~----~~~~~~~l~~--~~~~ 275 (407)
-++|+.+++.+++.. +-|...-|.+. +.|.+ ...+..-.++-+-+.+ +.+| +...-+.+.. .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 677888888777632 22333222221 22222 1222333333222222 4544 2334444444 3567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 276 GGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.|++.++.-.-.-+.+ +.|++.+|..++-++....++++|...+.+++-..
T Consensus 475 qgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred cccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 8999988766555554 68999999999999999999999999999998643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.78 Score=34.70 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+...+........++.+... + +.+...++.++..|++. +..+.++.+.. .. +......+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~--~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~---~~-----~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKL--N-SENPALQTKLIELYAKY-DPQKEIERLDN---KS-----NHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcc--C-ccchhHHHHHHHHHHHH-CHHHHHHHHHh---cc-----ccCCHHHHHHH
Confidence 34556666666666667766666664 3 34555666666666654 23344444432 11 22333445666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
|.+.+.++++.-++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666666666655421 22233333333 5566666655541 24445555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.1 Score=33.91 Aligned_cols=85 Identities=11% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+....+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555555666666666655554 244555556666665442 2233333321 11222233345555555
Q ss_pred CChHHHHHHHHHH
Q 015416 208 NRVDDGATYFRKM 220 (407)
Q Consensus 208 g~~~~a~~~~~~~ 220 (407)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.06 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
|..|+.+|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.035 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=12.2
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEI 282 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A 282 (407)
++..|.++.+|..+...|...|++++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444444444444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.3 Score=35.09 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+...+...+++++|...++..+..-... .....+-..|.......|.+++|+..++.....+ -.......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 4455666666666666666665431110 0011222334556666667777776666655432 1223344455666
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 015416 170 CKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~ 189 (407)
...|+-++|..-|.+.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66777777777777666653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.2 Score=41.52 Aligned_cols=119 Identities=16% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..-+..+.+..-++.|+.+-.. .+..++. -.......++.+.+.|++++|...|-+.+.. +.|+ .++.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~---~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDT---LAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445555555555555544332 1211111 1112223334444555555555555444332 1111 1233
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 334444444455555555555543 333344555556565555554444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.22 Score=41.57 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG----------------MLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
+.++-.-..++.|.+.|+..|..+|+.|++.+-+-. +-+-++.++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344545555667777777778888877777654322 2345788888999889999988888888
Q ss_pred HHHHhcCCh
Q 015416 202 DACFEVNRV 210 (407)
Q Consensus 202 ~~~~~~g~~ 210 (407)
+++.+.+..
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 888776653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.3 Score=40.67 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+.+|..+|+|.+|+.+..++..+..--..+-..|+.-+...+++-+|-++..+...
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 344555566666666655555431111111224455555566666666666555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.4 Score=33.86 Aligned_cols=56 Identities=16% Similarity=-0.014 Sum_probs=38.9
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
.-.+.++.+.+..++..+.-..| ..+..-..-...+...|+|.+|+.+|+.+....
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP---~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRP---EFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 33567788888888888876422 233344445566778888999999888887654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.43 Score=40.48 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3344444444555555555555554443 334445555555555555555555544444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.083 Score=29.03 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 015416 266 YKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.8 Score=37.68 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
...+++..+.....+.-...+..+|+..| .+...|..++.+|... ..++-..+|+++.+..+. |...-..|...|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y- 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY- 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-
Confidence 44455555555555555555555555544 4555555566665555 345555555555554322 222222233333
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCC
Q 015416 206 EVNRVDDGATYFRKMVDSGLRP--N---LAVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 278 (407)
..++.+.+..+|.++..+-++. + ...|..|...- ..+.+....+..++.. +...-...+..+-.-|....+
T Consensus 143 Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 143 EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 3355555555555555431110 0 11333332211 2344445555555444 222333444444555566666
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
+++|++++..+++.
T Consensus 221 ~~eai~Ilk~il~~ 234 (711)
T COG1747 221 WTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666666554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.35 Score=41.60 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=51.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
-.+.|.+.|.+++|+.+|...... .| +.+++..-..+|.+..++..|+.-....+.....-..+|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666552 33 556666666666666666666555555544322233344444444444555
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
..+|.+-++.++..
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55565555555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.048 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHhcCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A 103 (407)
+..+|..+..+|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.8 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..++.+++..++.-+.- ++|... .-..-+..+...|+|.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44455555555555544 233332 222223344455555555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.56 Score=39.33 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 015416 157 PDTLSFNNLIDQLCKN-----GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV----------------NRVDDGAT 215 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 215 (407)
.|..+|-..+..+... +..+=....++.|.+.|+.-|..+|..|++.+-+. .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4666676666666543 45566666778888899999999999998876432 23456899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
++++|..+|+-||..+-..|+.+|.+.+..
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999987764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.6 Score=34.68 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++.+.+.++.|+.-..+.++..|....+...-..+|-+...+++|+.-|.++.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334444444444444444444433333333344444555555555555555555553
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.28 E-value=2.8 Score=35.09 Aligned_cols=212 Identities=9% Similarity=0.097 Sum_probs=109.7
Q ss_pred CccCCcchHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 42 GVVSDGVVYGSLMKGY-FMKGMEEEAMECYNEAVGENSSVKMSAV---ANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+..||+..-|..-..- .+...+++|+.-|++.++..+ ....+ +...++..+.+.+++++....|.+++.--...
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4456665544432221 234577888888888776542 22222 33445677778888888888887776421000
Q ss_pred CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 015416 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTL----SFNNLIDQLCKNGMLAEAEELYGEMSDKGV-- 190 (407)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 190 (407)
.....+..+.|++++.-....+.+....+|+.-+.. .-..+.. |-.-+...|...+.+.+..++++++...--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 001113445566666655555555555555443221 0011222 224466667777777777777777654311
Q ss_pred --CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 015416 191 --NPD-------EYTYGLLMDACFEVNRVDDGATYFRKMVD-SGLRPNLAVYNRL----VGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 191 --~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 255 (407)
..| ...|..-+..|....+-.+-..+|++.+. ...-|.+.+...+ +....+.|.+++|..-|-++
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 23455556666666666666667766652 1123444333322 22344567777665444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.093 Score=28.26 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+|..++.+|...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555555566666666666555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.3 Score=40.41 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhh--CC----------c--cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKL--GG----------V--VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
..+.++.+|...+.+-.=.-++..+.+.. .+ + .-..-....-+..+.+..-++-|+.+-+.-...
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d- 363 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLD- 363 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC-
Confidence 34667777777776544334444333320 01 0 011223455677777778888888775543211
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015416 78 SSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (407)
...-.......+.-+.+.|++++|...|-+.+..- .| ..++.-|....+...-..+++.+.+.|+ .
T Consensus 364 --~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~----------s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a 429 (933)
T KOG2114|consen 364 --EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP----------SEVIKKFLDAQRIKNLTSYLEALHKKGL-A 429 (933)
T ss_pred --HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch----------HHHHHHhcCHHHHHHHHHHHHHHHHccc-c
Confidence 11112234445566678899999998887766431 11 2355667777777888888999998885 5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+...-..|+.+|.+.++.++-.++.+.-- .|.. ..-....+..|.+.+-.++|.-+-.+... +......
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i--- 498 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI--- 498 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---
Confidence 66677789999999999888777766544 2221 11234566667777777777665554432 2233333
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~ 255 (407)
.+-..|++++|++++..+
T Consensus 499 lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCHHHHHHHHhcC
Confidence 345578899999888765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.1 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 240 VQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
...|.++......+.+.. +.+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344555555444444433 22223334444555555555555555555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=5.9 Score=38.00 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=38.8
Q ss_pred hcCChhhHHHHHHHHHH-------hhCCccCCcchHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 22 RDGDSDGVFRLFEELKE-------KLGGVVSDGVVYGSLMKGYFMKG-----MEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|++.|+..|+.+.+ + + .+.....+..+|.+.. +...|+.+|.+.-..+ .|+... .
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~--~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~--~ 330 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK--G---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQY--L 330 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh--c---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHH--H
Confidence 34455666666655544 2 2 3334455555555432 4455555555555554 222222 2
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhcC
Q 015416 90 VLDALCNN---GKFDEALKLFDRMKNEH 114 (407)
Q Consensus 90 l~~~~~~~---~~~~~A~~~~~~~~~~~ 114 (407)
+..++... .+...|.++|......|
T Consensus 331 lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 331 LGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 22222222 23455555555555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.72 Score=36.81 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+.+.|+ +.|...|-.+...+ .--++... ..+..|....+.++++.++.++.+.....+ .+++..+..|+..|.+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~--~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTP--ELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK 190 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCC--CCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 344444 67788887877665 23344444 444455557889999999999887654432 3388899999999999
Q ss_pred cCCHHHHH
Q 015416 137 QGRFKDAI 144 (407)
Q Consensus 137 ~g~~~~A~ 144 (407)
.|+++.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99998875
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.7 Score=38.30 Aligned_cols=287 Identities=11% Similarity=0.065 Sum_probs=152.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHH--HHHHHHHHhCC---------CCCCCchhh
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA--MECYNEAVGEN---------SSVKMSAVA 86 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~~---------~~~~~~~~~ 86 (407)
..-...+.++..++++..+... |.......++.-...|.+.|..... ++-++.+...- .+..-....
T Consensus 25 ~~~f~~~~~d~cl~~l~~l~t~--~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~ 102 (696)
T KOG2471|consen 25 HEQFNNSEFDRCLELLQELETR--GESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVM 102 (696)
T ss_pred HhccCCcchHHHHHHHHHHHhc--cccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHH
Confidence 3334567899999999999988 7666677788888888888776532 22222221110 000111112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHH---HHHhhCC---------
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF---RKMGEYR--------- 154 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~--------- 154 (407)
+-...-.|.....+..|+++.......-..... ..-..+.......+....+.++|+.++ .++...+
T Consensus 103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~-~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~ 181 (696)
T KOG2471|consen 103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLES-SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI 181 (696)
T ss_pred hhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 222222344445555666655544332100000 000112223344555666667776554 4443321
Q ss_pred --------CCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHH
Q 015416 155 --------CSPDTLS------------FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY-GLLMDACFEVNRVDDG 213 (407)
Q Consensus 155 --------~~~~~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a 213 (407)
.+|+... ...-+.+|........+..-.+.... +.-+...+ ..--..+.-.|++.+|
T Consensus 182 ~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 182 PANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred chhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0111111 11112233333333333322222221 11122122 2222345667889998
Q ss_pred HHHHHHHH---HCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------cCCCC----------HHHHH
Q 015416 214 ATYFRKMV---DSGL--RP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK--------KLKMD----------DASYK 267 (407)
Q Consensus 214 ~~~~~~~~---~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~----------~~~~~ 267 (407)
.+++-..- ..|. .| ....||.|+..+.+.|.+..+..+|.+... +..|. .....
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 88876543 2221 12 123568888888889999888888887774 33332 23345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
..+..|...|++-.|.+.|.+....+ ..++..|..|+.++.-
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 56778889999999999999999874 7788889888887653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.3 Score=31.42 Aligned_cols=140 Identities=15% Similarity=0.263 Sum_probs=72.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.-.|..++..++..+..... +..-+|-++--....-+-+-..+.++.+-+.- |.. .+
T Consensus 13 ildG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF--------Dis----------~C 69 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGKIF--------DIS----------KC 69 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------GG----------G-
T ss_pred HHhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhhhc--------Cch----------hh
Confidence 34577778888877777644 23333334433333334444444444443321 211 12
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++......+-.+- .+.......+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++
T Consensus 70 ~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 33333333222221 23444555667777788888888888887653 3667777778888888888888888888
Q ss_pred HHHHHCCCC
Q 015416 218 RKMVDSGLR 226 (407)
Q Consensus 218 ~~~~~~~~~ 226 (407)
.++.+.|++
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 888887753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.16 Score=27.24 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|..++.++...|++++|++.|++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.4 Score=34.81 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=73.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGML 245 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 245 (407)
-|....+++.|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+..--.+.++ +.||.. ....+...+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 45556678888888877776 45665 4566677777888888888877777777 456655 455566777778888
Q ss_pred HHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 246 DEAKSFFDIMVK-----KLKMDDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 246 ~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
++|+..+.+..+ ..++.......|..+=-..=...+..++.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888888888755 233333444444443333333334444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.28 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
.+|..++.+|...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356677777777888888888887777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.99 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
|.+..++.+.+.+.+.+++.+.++-++. .|.|...-..++..++-.|+|++|..-++-+-...+...+....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 3455567777888888888888777763 4557777778888888888888888877777666555556666677766
Q ss_pred HH
Q 015416 92 DA 93 (407)
Q Consensus 92 ~~ 93 (407)
++
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=2 Score=36.73 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=55.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.+...++..-....+++.++..+-++...- ..|+... .++++.+. .-++++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 344445555555666777777766665421 1111111 12223222 234567777777667777777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+.+.+.+++.+|.++...|..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777666664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.43 Score=41.09 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.-|.++|.+++|+++|..-... .|-++.++..-..+|.+...+..|..-...++..+ ..-.-+|..-+.+-...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 3577889999999999888763 34488899999999999999998888888877765 33344455555555556
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 015416 98 GKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~ 116 (407)
|...+|.+-++.+++..+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 6777777777777765443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.93 E-value=9.8 Score=37.12 Aligned_cols=292 Identities=13% Similarity=0.094 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHhhCCccCC--cchHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCch-----hhHHHHHHHHHhcC
Q 015416 27 DGVFRLFEELKEKLGGVVSD--GVVYGSLMKGYF-MKGMEEEAMECYNEAVGENSSVKMSA-----VANNSVLDALCNNG 98 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~ 98 (407)
..|+.+++.+.+. ...+|. ..++..++..+. ...+++.|...+++...... .++. .....++..+.+.+
T Consensus 38 ~~ai~CL~~~~~~-~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~--~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 38 ATAIKCLEAVLKQ-FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE--RHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhcC
Confidence 3567777777742 134443 345666777776 67999999999998865441 1111 12234567777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--Hc
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM-ADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLC--KN 172 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~ 172 (407)
... |.+.+++.++.-.... ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYG-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred HHH-HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 666 9999988776532210 10022233333 333334489999999998886532 1233444444544443 45
Q ss_pred CCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH---C--CCC----------
Q 015416 173 GMLAEAEELYGEMSDKG---------VNPDEYTYGLLMDACF--EVNRVDDGATYFRKMVD---S--GLR---------- 226 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~---~--~~~---------- 226 (407)
+..+++.+.++++.... ..|-..+|..++..++ ..|+++.+...++++.+ . ...
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 66777777777764311 1234556666766554 56776666665554432 1 000
Q ss_pred ---------------CC---------HHHHHHH--HHHHHhcCCHHHHHHHHHHHHh---cCC-------CC-------H
Q 015416 227 ---------------PN---------LAVYNRL--VGKLVQVGMLDEAKSFFDIMVK---KLK-------MD-------D 263 (407)
Q Consensus 227 ---------------~~---------~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~---~~~-------~~-------~ 263 (407)
+. ..+..-+ +-..+..+..+.|.+++++..+ ... +. .
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 10 0111111 1223345555567666666555 111 10 1
Q ss_pred HHHHHHH---------HHHHhcCCHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 264 ASYKFMM---------KALSDGGKLDEILEIVGGILDDGGIEFS-------EELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 264 ~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
..|...+ ...+-.|++..|...+..+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1122222 2234578899999999988865321222 2333334445566799999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.3 Score=34.05 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCh
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRV 210 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 210 (407)
.|.....+..|+..|.+.+..+ |+.. -|+.-+.++.+..+++.+..=-++.++ +.|+. .....+.........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 4666778899999888888754 6664 456777888889999998887777776 45553 3455566777788889
Q ss_pred HHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 211 DDGATYFRKMV----DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 211 ~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.|+.++.+.. +..+++...+...|..+--..=...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999998874 3344444556666655544333444555555544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.59 E-value=5.5 Score=33.41 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=60.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--CCCHHHHHHHHHHHH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---RC--SPDTLSFNNLIDQLC 170 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 170 (407)
+...+++|+.-|+++++...... ...-.+...++..+.+.|++++....|.+++.. .+ .-+..+.|.++....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKg--eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKG--EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 44567777777777777654431 112223444566677777777777777666431 00 123344555555444
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDK--GVNPD---EYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
...+.+-...+|+.-++. ..+.+ -.|-+.+...|...+.+.+..++++++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444444444444332210 00000 1123344555555555555555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.57 E-value=10 Score=36.43 Aligned_cols=273 Identities=14% Similarity=0.102 Sum_probs=162.3
Q ss_pred hhhHHHHHHHHHHhhCCccCCcchHHHHHHHH-----HHcCCHHHHHHHHHHHHh-------CCCCCCCchhhHHHHHHH
Q 015416 26 SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY-----FMKGMEEEAMECYNEAVG-------ENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~~~ 93 (407)
...|.+.++...+. | +......++.+| ....+++.|+.+|..+.. .+ .......+..+
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-----~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-----LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-----CCccccHHHHH
Confidence 45788888888776 4 444444444444 355789999999999876 33 33456677888
Q ss_pred HHhcC-----CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 94 LCNNG-----KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG---RFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 94 ~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
|.+.. +...|..++.+.-..+.+ .....+..+|.... ++..|.++|......| ....+-.+
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~--------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~l 366 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELGNP--------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRL 366 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHH
Confidence 87753 667799999998888744 24455555555443 6789999999999887 33333333
Q ss_pred HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HH--
Q 015416 166 IDQLC----KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV-GK-- 238 (407)
Q Consensus 166 ~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-- 238 (407)
..+|. -..+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|... ..+-...+ ..
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~ 443 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSE 443 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcc
Confidence 33332 2347889999999999887 3332222233333333 77777777777777655332 11111111 11
Q ss_pred -HHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 239 -LVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG----GKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 239 -~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
... ..+...+...+.+... .-+......+...|... .+++.|...+....... ......+...+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~ 516 (552)
T KOG1550|consen 444 EDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMH 516 (552)
T ss_pred ccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHH
Confidence 111 1244555666655543 33556666666666543 34778888888776642 33222333333
Q ss_pred hhc-C--cHHHHHHHHHHHHHhh
Q 015416 310 SKE-G--REEEVVKLMEKKEREK 329 (407)
Q Consensus 310 ~~~-g--~~~~A~~~~~~~~~~~ 329 (407)
..- | ++..|.+++++....+
T Consensus 517 e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 517 EHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hcCcCcchhHHHHHHHHHHHhcC
Confidence 221 1 1567777777766544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.54 E-value=2.6 Score=29.44 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+..+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.7 Score=34.61 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP---DEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34467777777777888888877777776533111 233444455666667777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.03 E-value=14 Score=36.70 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=112.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----HH---HHHHHHH-HHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHH
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPD----TL---SFNNLID-QLCKNGMLAEAEELYGEMSDK----GVNPDEYTYG 198 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~ 198 (407)
+.......++.+|..++.++...-..|+ .. .|+.+-. .....|+++.|.++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 4455667889999988887754321222 11 3444322 334578999999998887753 1223456677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHHhcCC--HHHHHHHHHHHHh----cCC---CCHH
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLA---VYNRLV--GKLVQVGM--LDEAKSFFDIMVK----KLK---MDDA 264 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~--~~~A~~~~~~~~~----~~~---~~~~ 264 (407)
.+..+..-.|++++|..+..+..+..-.-+.. .|..+. ..+..+|. +.+.+..|..... ..+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77888888999999999888776532122222 333332 33556673 3444455554444 111 1223
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCcHHHH--HHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 265 SYKFMMKALSDG-GKLDEILEIVGGILDDGGIEFSEELQ--EFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 265 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++..+..++.+. +...++..-+.-.... ...|-.... ..|+.++...|+.++|...+.++....
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 445555555552 2222222222222221 112222222 267888899999999999999987543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.66 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+..++.++...|++++|++.|++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.96 E-value=3.1 Score=39.03 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
+..-|..|..+....+++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 33445555555555555555555544443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=9.6 Score=34.89 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=80.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
|.-....||+-.|-+-+....++.++ ++.........+...|+++.+.+.+...... +.....+...+++...+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhc
Confidence 33344567776665555555554333 4444444445566778888888887766543 23345677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
.|+++.|...-.-|+...+. +..+.......-...|-++++.-.++++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC------ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 89999999888888776554 33333333334445567788888888877654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.8 Score=29.82 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 225 LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.|++.+..+.+++|.+.+++..|.++|+.+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444444444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.63 E-value=2.4 Score=33.94 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 246 DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG--GIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
+.|.+.|-.+.. +.-.++.....++..|. ..+.++++.++.++++.. +-.++++++..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 444444444444 22223333333333333 444555555555555442 11345555556666666666555553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.5 Score=34.23 Aligned_cols=75 Identities=17% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-----------FKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
+++|+.-|++.+...|. ...++..+..+|...+. +++|...|++.... .|+...|+.-+..
T Consensus 51 iedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 34555556666665543 33466666666655432 44555555555554 3777777666655
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 015416 169 LCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~ 188 (407)
.. +|-++..++.+.
T Consensus 123 ~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 123 AA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH------THHHHHHHHHHS
T ss_pred HH------hhHHHHHHHHHH
Confidence 42 344555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=4.3 Score=37.08 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh---CC--CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCCH-
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGE---YR--CSPD---TLSFNNLIDQLCKNGMLAEAEELYGEMSD-------KGVNPDE- 194 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~- 194 (407)
-..+.-.|++.+|.+++...-- .| +.|. -..||.|+..+.+.|.+.-+..+|.++++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 4556778999999988765422 12 1121 22468888888888888888888877763 4555431
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 195 ---------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 195 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
.......-.|...|++-.|.+.|...... +..++..|..|..+|.-
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12223556678899999999999988864 46688899999888864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=9 Score=33.03 Aligned_cols=121 Identities=15% Similarity=0.006 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
+..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++...+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444443 3344444444431 23333333333333321 12234444444442 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++.+.|+ ..|...+-...+. ++ .....+.++...|.. +|+..+..+..
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~--~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK--GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC--Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555554 2333333333331 11 223444455555543 45555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.15 E-value=6 Score=30.83 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
+.++.+.+. +++|+...+..++..+.+.|++..-.+++..-. -+|.......+ +...+.+..+.++--.|
T Consensus 15 EYirSl~~~--~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V------i~DSk~lA~~L--Ls~~~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 15 EYIRSLNQH--NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV------IPDSKPLACQL--LSLGNQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc------cCCcHHHHHHH--HHhHccChHHHHHHHHH
Confidence 344444444 666666677777777777776655554443222 22222222222 11122223333333333
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
.++- ...+..++..+...|++-+|+++.+..
T Consensus 85 LkRL---------~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 85 LKRL---------GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHh---------hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3320 003455556666666666666666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.13 E-value=3.3 Score=32.47 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=37.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 252 FDIMVKKLKMDDASYKFMMKALSDGGK-----------LDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
|+..+...|....++..++.+|...+. +++|...|+++... .|+.+.|..-.... .+|-+
T Consensus 58 ~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~------~kap~ 128 (186)
T PF06552_consen 58 FEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMA------AKAPE 128 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHH------HTHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHH------HhhHH
Confidence 333333444455666666666654332 56677777777775 78888887665544 23555
Q ss_pred HHHHHHHh
Q 015416 321 LMEKKERE 328 (407)
Q Consensus 321 ~~~~~~~~ 328 (407)
+..++.+.
T Consensus 129 lh~e~~~~ 136 (186)
T PF06552_consen 129 LHMEIHKQ 136 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 55555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.93 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+++.|+..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555554443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.73 Score=24.24 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++.++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444555555555555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.88 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+++.+...|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444555555555555555555555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.06 E-value=20 Score=34.95 Aligned_cols=311 Identities=11% Similarity=0.057 Sum_probs=167.7
Q ss_pred CcCCCCcCHHHHH-----HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 015416 2 FVKGFVADPVVYS-----YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME--EEAMECYNEAV 74 (407)
Q Consensus 2 ~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 74 (407)
.+-|++.+..-|. .+|+-+...+.+..|+++-..+... ... ...+|......+.+..+. +.+++..++=+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl 500 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKL 500 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHh
Confidence 4556666665554 4566677778888888887766442 111 245666666666665322 23333333333
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY- 153 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 153 (407)
+.. . ....+|..+.+-....|+.+.|..+++.=...+.... +-.+..-+...+.-....|+.+-...++-.+...
T Consensus 501 s~~--~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~-lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 501 SAK--L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP-LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred ccc--C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH-HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 321 1 2356677788777889999999988764322221100 1113334455556666777777766666555432
Q ss_pred ----------CCCCCHHHHHHHHHH--------HHHcCCHHHHHHHH--HHHHhC-CCCCCHHHHHHHHHHHHhcCChH-
Q 015416 154 ----------RCSPDTLSFNNLIDQ--------LCKNGMLAEAEELY--GEMSDK-GVNPDEYTYGLLMDACFEVNRVD- 211 (407)
Q Consensus 154 ----------~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~--~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~- 211 (407)
..|.....|..+++- +.+.++-.++..-| +..... .+.+-..........|.+.....
T Consensus 577 ~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~ 656 (829)
T KOG2280|consen 577 NRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSF 656 (829)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhh
Confidence 011111222222220 01111111111111 111000 01111222333344444433311
Q ss_pred ---------HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 212 ---------DGATYFRKMV-DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 212 ---------~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (407)
+-+++.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.. -|+-..|..-+.++...++|++
T Consensus 657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHH
Confidence 1122222222 12222233355666677778889888888877764 4788888889999999999998
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
-.++-+.... +--|.-.+.++.+.|+.++|.+++-++....
T Consensus 734 LekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 734 LEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 7776554332 3345556778889999999999988876544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.99 E-value=6.9 Score=29.66 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.++.+++..+++.+.-..|... ..-..-...+...|+|.+|..+|+++...
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555554443321 12222233445555666666666655553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.72 E-value=14 Score=32.89 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++..++..+.+.|.++.|...+.++...+... .+.+...-++.+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999988643211 344555566777788999999998887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.64 E-value=13 Score=32.32 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCN--N----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+++.+.+++.+.+.+ +..+..++.+..-.... . .....|..+|+.|++..+-..+ ++-.++..++.. .
T Consensus 78 ~~~~~~~y~~L~~~g--Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs--~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG--FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS--PEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhc--cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC--ccchhHHHHHhc--c
Confidence 345577888888887 67676666554333332 1 2367788999999987654321 122334444333 3
Q ss_pred cCCH----HHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 137 QGRF----KDAIEVFRKMGEYRCSPDTL--SFNNLIDQLCKNGM--LAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 137 ~g~~----~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
..++ +.++.+|+.+...|+..+.. ....++..+..... ..++..+++.+.+.|+++....|..++-..
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3333 45667777777766654433 23333332222222 346777888888888887777666554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.59 E-value=22 Score=34.79 Aligned_cols=272 Identities=13% Similarity=0.096 Sum_probs=148.6
Q ss_pred HHHHHHHHHHH-hcCChhhHHHHHHHHHHhhCCccCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-
Q 015416 11 VVYSYLMLGFV-RDGDSDGVFRLFEELKEKLGGVVSDGV-----VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS- 83 (407)
Q Consensus 11 ~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 83 (407)
.++--+...+. ...+++.|...+++.... ...++.. ....++..+.+.+... |....++.++.-.+.+.+
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l--~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILL--CERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 34555666665 578899999999988665 2222222 2234566666666665 999998877643221222
Q ss_pred -hhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH--HhcCCHHHHHHHHHHHhhCC-----
Q 015416 84 -AVANNSV-LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY--CGQGRFKDAIEVFRKMGEYR----- 154 (407)
Q Consensus 84 -~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~----- 154 (407)
...+..+ +..+...+++..|.+.++.+........ .+...++..++.+. .+.+..+++.+.++.+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 2233333 2233334799999999998876542111 11333444444443 34565677777777663321
Q ss_pred ----CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh---C-CCC--------------------------CCHH---
Q 015416 155 ----CSPDTLSFNNLIDQLC--KNGMLAEAEELYGEMSD---K-GVN--------------------------PDEY--- 195 (407)
Q Consensus 155 ----~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~---~-~~~--------------------------p~~~--- 195 (407)
.+|...+|..++..++ ..|+++.+...++++.. . .-. |...
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 2345667777776654 56777777666555432 0 000 1000
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHH---C-----CCCCC--------HHHHHH---------HHHHHHhc
Q 015416 196 --------TYGLLMDACFEVNRVDDGATYFRKMVD---S-----GLRPN--------LAVYNR---------LVGKLVQV 242 (407)
Q Consensus 196 --------~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-----~~~~~--------~~~~~~---------l~~~~~~~ 242 (407)
.|..-.-..+..+..+++.+++++..+ . ...+. ...|.. .+...+-.
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence 111111223344555566666655442 1 11111 112211 12233457
Q ss_pred CCHHHHHHHHHHHHhc---CCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKK---LKM------DDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~---~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
+++..|...+..+... .++ .+..+...+..+...|+.+.|...|.
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8999999999988872 221 13334444455566899999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.57 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
++.++.+.|++++|...|++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444445555555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.41 E-value=1 Score=23.96 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666655554
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=18 Score=33.25 Aligned_cols=93 Identities=9% Similarity=0.114 Sum_probs=53.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..+...|+++.+.+.+...... +.....+...++....+.|+++.|...-.-|+...+. +..+.......-...|-++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3445567777776666555432 2334455666666667777777777777666654443 3333333333344556667
Q ss_pred HHHHHHHHHHhcCCC
Q 015416 247 EAKSFFDIMVKKLKM 261 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~ 261 (407)
++...|+++....+|
T Consensus 409 ~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 409 KSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccCCh
Confidence 777777766653333
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.05 E-value=5.4 Score=37.38 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=41.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
...|+...|.+++..+....+.. .-.....|.....+.|-...|..++.+.+... ...+.++-.+++++....+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~-----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQ-----QDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhh-----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhh
Confidence 34455555555555544433221 11223344444455555555555555544433 2233344445555555555
Q ss_pred HHHHHHHHHHHHhC
Q 015416 175 LAEAEELYGEMSDK 188 (407)
Q Consensus 175 ~~~a~~~~~~~~~~ 188 (407)
.+.|++.|+++.+.
T Consensus 692 i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 692 ISGALEAFRQALKL 705 (886)
T ss_pred hHHHHHHHHHHHhc
Confidence 55555555555543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.90 E-value=8.5 Score=29.19 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.++.+++..++..+.--.|.....-..-+..+...|+|.+|+++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554433333333333344445555555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.83 E-value=5.5 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=20 Score=33.28 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
.|....-+++..+..+-.+.-.+.+..+|+..| -+...|..++.+|... ..++-..+++++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666778888888888888899999999854 4677899999999888 667888999999986543 455555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDD------ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|-+ ++.+.+..+|.++...+-|.. ..|..+... -..+.+....+...+....|...-...+..+..-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66666 889999999999988555521 234433322 156788888888888888777777778888888899
Q ss_pred hcCcHHHHHHHHHHHHHh
Q 015416 311 KEGREEEVVKLMEKKERE 328 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~ 328 (407)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999988753
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.70 E-value=17 Score=32.54 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCC
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---------RCS 156 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 156 (407)
.+.-+...|..+|+++.|++.|.+...- +.. .......|..+|..-.-.|+|.....+..+..+. .++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs--~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTS--AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcc--hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4566778888889999999988885432 111 1113446666777777778888777777666543 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHCCC
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG------VNPDEYTYGLLMDACFEVNRVDDGAT-----YFRKMVDSGL 225 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~ 225 (407)
+....+..+.... .+++..|.+.|-...... +.|...+....+.+....++-+--.. .|+...+
T Consensus 229 ~kl~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--- 303 (466)
T KOG0686|consen 229 AKLKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--- 303 (466)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh---
Confidence 3333343333333 336666666654443211 23333333334444443333222222 2223322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..+..+..|...|. +++...+++++++..
T Consensus 304 -l~Pqlr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 -LEPQLREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred -cChHHHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 22334444444433 477888888887776
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.4 Score=23.36 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555544
|
... |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=88.67 E-value=7.3 Score=31.99 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=12.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 304 FVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 304 ~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.++....+.|+.++|.+.+.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 344455555555555555555543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.5 Score=32.82 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+.+..+..+.+.+..++++...+.-++.+ |.+......++..++-.|+|++|..-++-.-...++. .+....|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~---t~~a~lyr 76 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD---TVGASLYR 76 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc---chHHHHHH
Confidence 34455667778888888888888887776 5567777778888888899988888887766654331 12334555
Q ss_pred HHHHH
Q 015416 129 VMADG 133 (407)
Q Consensus 129 ~l~~~ 133 (407)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.46 E-value=6.3 Score=37.09 Aligned_cols=133 Identities=17% Similarity=0.075 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.-+.+++.+.++|-.++|+++- +|+.- -.....+.|+++.|.++..+.. +..-|..|.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~--------s~~Kw~~Lg 673 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN--------SEVKWRQLG 673 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc--------chHHHHHHH
Confidence 3466777777778777776543 23222 2234457788998888765543 456789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
++..+.+++..|.++|.+... |..|+-.+...|+-+....+-....+.|. .| . -..+|..
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d--------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N-~----AF~~~~l 733 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARD--------------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN-L----AFLAYFL 733 (794)
T ss_pred HHHhhcccchhHHHHHHhhcc--------------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc-h----HHHHHHH
Confidence 999999999999999987653 55567777788887777777777777772 22 2 2335667
Q ss_pred cCCHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMS 186 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~ 186 (407)
.|+++++.+++..-.
T Consensus 734 ~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 734 SGDYEECLELLISTQ 748 (794)
T ss_pred cCCHHHHHHHHHhcC
Confidence 789998888876553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.18 E-value=11 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=13.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
++.+.+.+++|+...+..++..+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33334444444444555555555554443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=8 Score=33.01 Aligned_cols=78 Identities=6% Similarity=-0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
+.+-.+|.+.++++.|+.+.+.++... |.+..-+.--+-.|.+.|.+..|..-++..++.-+... ++......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q 257 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence 345566777777777777777777765 33455555556667777777777777777766654432 44444444
Q ss_pred HHHHH
Q 015416 131 ADGYC 135 (407)
Q Consensus 131 ~~~~~ 135 (407)
+....
T Consensus 258 l~~l~ 262 (269)
T PRK10941 258 IHSIE 262 (269)
T ss_pred HHHHh
Confidence 44433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.86 E-value=6.3 Score=34.19 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
...|--=++-|.+..++..|...|.+-++.. -.| +...|+.-..+-...|++..|+.=....+...|.+...|..-.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3455566667777777777887777766432 123 3446666666666667777777777777765566666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015416 271 KALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++....++.+|....+....
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777777666544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.86 E-value=14 Score=30.47 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...-...+++.+|+++|+++..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556777778888777766
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=29 Score=34.06 Aligned_cols=118 Identities=10% Similarity=0.150 Sum_probs=68.4
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 207 VNRVDDGATYFRKMVDS-GLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
..+.+.|...+...... ++.+.. .++..++......+...++...+....... .+......-++.....++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHH
Confidence 34557777777766432 222221 133444433344332456666666544321 23444455555556788888888
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..+..|-... .-......-+++++...|+.++|...|+++..
T Consensus 333 ~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888775532 33445555677777778888888888888753
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.1 Score=28.23 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHhhcCcHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSE-ELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
...+.++|+..|..+++...-+++. .++.+++.+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776653222221 24556666777777777766653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.94 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHhhcCcHHHHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~ 323 (407)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.98 E-value=58 Score=36.59 Aligned_cols=290 Identities=11% Similarity=0.048 Sum_probs=150.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHH----HHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEEL----KEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.|..+-.+++.+.+|+..+++- .+. ......|..+...|+..+++|....+...-.. .|+ ...-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~----~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s---l~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK----ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS---LYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh----HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc---HHHH
Confidence 5566777889999999999883 221 11223445555589999999998888765222 112 2334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL-IDQL 169 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~ 169 (407)
+......|++..|...|+++.+.++. ...+++.++......|.+...+-..+-..... .+....|+++ +.+-
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~------~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPD------KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAA 1528 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCc------cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHH
Confidence 44567789999999999999887654 34466666666666677776666555444321 2222233322 1222
Q ss_pred HHcCCHHHHHHHHH--------------HHHhCCCCCCHHHH-HHH----------HHHHHhcCChHHHHHHHHHHH---
Q 015416 170 CKNGMLAEAEELYG--------------EMSDKGVNPDEYTY-GLL----------MDACFEVNRVDDGATYFRKMV--- 221 (407)
Q Consensus 170 ~~~g~~~~a~~~~~--------------~~~~~~~~p~~~~~-~~l----------~~~~~~~g~~~~a~~~~~~~~--- 221 (407)
=+.++++....... .+... .+-|...+ ..+ +.++...|.+..+.++.-++.
T Consensus 1529 W~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLSDRNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhcchhhhhhhhhcccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 33444444333322 11111 01111111 110 111222222222222211110
Q ss_pred ------H--CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHh--c-----CCCCHHHHHHHHHHHHhcCCHH
Q 015416 222 ------D--SGLRPNLA------VYNRLVGKLVQVGMLDEAKSFFDIMVK--K-----LKMDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 222 ------~--~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~g~~~ 280 (407)
+ .+..++.. -|..-+..-....+..+-+--+++..- . ...-..+|....+.....|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 0 01111111 111111111111111221111222111 1 1223567888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 281 EILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.|...+-.+.+.. -+..+...+..+...|+...|+.++++....
T Consensus 1688 ~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9988877776641 4455666777888899999999998887743
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=14 Score=31.63 Aligned_cols=77 Identities=8% Similarity=-0.090 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.+.|-.+|.+.++++.|+.+.+.+..-.|.++.-+.--+-.|.+.|.+..|..=++..++...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455566677777777777777777666666666666666777777777777777666654334444444443333
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.83 E-value=2.6 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 305 VKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++.+|...|+.+.|.++++++...+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666665433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.74 E-value=3.6 Score=38.48 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=47.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
...|+...|.+.+..+......-.......|.+...+.|..-.|-.++.+.+......+-++..+++++....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34566666666665555321111122334455555555555566666665555334455556666666666666666666
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
.|+++++.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66666654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.56 E-value=3.6 Score=34.91 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
+.....|..+|.+.+|.++.++....++- +...+-.|+..+...|+--.+.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555555555555555555555433 4445555555555555544444444443
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.34 E-value=25 Score=31.66 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccccc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH----NPPKRLAVNL 124 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ 124 (407)
.+.-+...|..+|+++.|++.|.++..--.........|..++..-...|+|.....+..+....- .....+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 567788899999999999999998654321123345567777888888899988888777766541 0000111122
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCC-CHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHhCCCCC
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYR------CSP-DTLSFNNLIDQLCKNGMLAEAEE-----LYGEMSDKGVNP 192 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~~p 192 (407)
..+..|... ..+++..|.+.|-...... +.| |..+|. .+.++..-++-+--.. .|+...+ .
T Consensus 232 ~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 232 KCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 233334333 3447777777665443211 123 333343 3334333333222111 2333333 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.+..+..+...| .+++...+++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 334444444444 4578888888888764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.30 E-value=23 Score=31.30 Aligned_cols=117 Identities=8% Similarity=-0.033 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD---GGKLDEILEIVGG 288 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 288 (407)
.-+.+++++++.+ +.+......++..+.+..+.+...+-|+++....+.+...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344555555442 23444555555555555555555555555555444455555555544433 2234444444444
Q ss_pred HHhcC-----CC----CCcH-------HHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 289 ILDDG-----GI----EFSE-------ELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 289 ~~~~~-----~~----~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+..- +. .+.. .++..+...+..+|..+.|..+++-+.+-+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33220 00 0001 122233445667788888888888777554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.12 E-value=24 Score=31.24 Aligned_cols=63 Identities=5% Similarity=-0.060 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
+.-+.+++++++..+. +...+..++..+.+..+.++..+-+++++... +-+...|...+....
T Consensus 48 E~klsilerAL~~np~------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 48 ERKLSILERALKHNPD------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHH
Confidence 3445556665555332 44455555666666666666666666665543 234455555554433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.91 E-value=9.8 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666777777777777777777766663
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.91 E-value=29 Score=32.15 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 226 RPNLAV-YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD--GGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 226 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.|+..+ -+.++..+.+.|-..+|.+.+..+....||+...|..+++.-.. +-+..-+..+|+.+...+| .++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444443 35567777788889999999999998878888888888875432 3347788899999999887 666666
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.-....-...|+.+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6655555678888887777766544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.75 E-value=9.3 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=32.8
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
...|.|......+...+...|++++|++.+-.++..+.-.-+......|+..+.-.|.-
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34556667777777777777777777777777766542222334445555555555543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.59 E-value=2 Score=21.62 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
+|..++.++...|+++.|...|+..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555666666666555554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.23 E-value=5.2 Score=34.41 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=51.4
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS-VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 120 (407)
|.+.+..+...++..-....+++.++.++-++.....- ..++. +-...++.+. .-+.++++.++..=+.-|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~--- 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFP--- 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhcccc---
Confidence 44445555555555555556666666665555432100 01111 1111222222 224456666666555666555
Q ss_pred ccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 121 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
|-.+++.+++.+.+.+++.+|.++.-.|..
T Consensus 134 --dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 --DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred --chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555666666666666666666665555443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=25 Score=30.41 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=82.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
..+++..+...+......+ +......+...|... .+...|...|..+.+.+.. .....|..+|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~-----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~--------~a~~~lg~~~ 119 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG-----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA--------EALFNLGLMY 119 (292)
T ss_pred ccccHHHHHHHHHHhhhcC-----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH--------HHHHhHHHHH
Confidence 4566777777777776544 223444444444432 4567788888876666532 2555566666
Q ss_pred Hh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 135 CG----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-------MLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 135 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
.. ..+..+|..+|++....|..+...+...+...|..-+ +...|...|.++...+ +......+...
T Consensus 120 ~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~ 196 (292)
T COG0790 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRM 196 (292)
T ss_pred hcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 65 3477778888888777764332222333444443321 2225666666666554 33333334433
Q ss_pred HHh----cCChHHHHHHHHHHHHCC
Q 015416 204 CFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 204 ~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
|.. ..+..+|...|....+.|
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 322 234566666666666654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.69 E-value=24 Score=30.10 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPNLAVY 232 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 232 (407)
.+.+-..+.+++++|+..|.+.+..|+..+. .+...+...|...|+...-.+......+ ..-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3556677889999999999999998877664 3556677888888887766655544332 2111223355
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 233 NRLVGKLVQ-VGMLDEAKSFFDIMVKKLKMD------DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 233 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
..|+..+.. ...++..+.+.....+-.... ...-..++..+.+.|.+.+|+.+...+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 566665544 345666666666666511111 12223456677778888888777665544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.53 E-value=26 Score=30.34 Aligned_cols=165 Identities=18% Similarity=0.092 Sum_probs=109.0
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh-
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN- 96 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 96 (407)
..+++..+...+...... + +......+...|.. ..+..+|..+|..+...+ .......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-----~~~a~~~lg~~~~~G 122 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-----LAEALFNLGLMYANG 122 (292)
T ss_pred ccccHHHHHHHHHHhhhc--C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----cHHHHHhHHHHHhcC
Confidence 446777888888877764 3 33455555555544 356889999999877766 34455556666665
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 97 ---NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-------RFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 97 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
..+..+|...|.++.+.|..+ ...+...+...|..-. +...|...|.+.-..+ +......+.
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~-----a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg 194 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVE-----AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLG 194 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChh-----HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHH
Confidence 348999999999999988553 1122566666666542 2347888999888876 555555566
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 167 DQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 167 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
..|.. ..++.+|...|...-+.|. ......+. .+...|
T Consensus 195 ~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 195 RMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 55543 3478999999999998774 33333333 444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.07 E-value=0.47 Score=36.04 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555544333445555555555555555455444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=28 Score=30.06 Aligned_cols=233 Identities=15% Similarity=0.053 Sum_probs=143.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCCc
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME----EEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~ 83 (407)
+|.......+..+...|. +.+...+..+... +|+..-...+.++++.|+. +++...+..+... .++
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d 104 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKS 104 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCC
Confidence 455555556666666665 3444444444442 3666666677777888764 4677777766443 334
Q ss_pred hhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 84 AVANNSVLDALCNNGK-----FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
..+....+.++...+. ...+...+....... +..+-...+.++.+.++ ..++..+-.+.+. ++
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--------~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~ 172 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--------STNVRFAVAFALSVIND-EAAIPLLINLLKD---PN 172 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--------CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CC
Confidence 5555555555555432 123344443333321 44466677778888877 5677777777763 55
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNG-MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
..+-...+.++.+.+ ....+...+..+.. .++.......+.++.+.++ ..+...+-...+.+ + .....+.
T Consensus 173 ~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ 243 (280)
T PRK09687 173 GDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIE 243 (280)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHH
Confidence 566555666666543 24567777777774 4567777788888888888 45666666666543 2 2456778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
++...|.. +|...+..+....+ |..+-...+.+|
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 88888885 68888888887444 666655555544
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.41 E-value=0.91 Score=39.22 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=55.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
..|.++.|++.|...+..+ ++....|..-..++.+.+++..|++-+...++..+. +..-|-.-..+....|
T Consensus 126 n~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLG 196 (377)
T ss_pred cCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhh
Confidence 4566777777777777665 455566666666667777777777777666665433 2233444444555566
Q ss_pred CHHHHHHHHHHHhhCCCCC
Q 015416 139 RFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~ 157 (407)
+|++|...|....+.++.+
T Consensus 197 ~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDE 215 (377)
T ss_pred chHHHHHHHHHHHhccccH
Confidence 7777777777766665433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.37 E-value=66 Score=33.44 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.|.+.+..+...+++++|.-.|+..-+ ....+.+|...|+|.+|+.+..++... ..--..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~--~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG--KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHH
Confidence 445555556667788888777776543 344567888889999998888776432 1111112255666777
Q ss_pred hcCcHHHHHHHHHHHHHhh
Q 015416 311 KEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~~ 329 (407)
..++.-+|-+++.+.....
T Consensus 1011 e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HcccchhHHHHHHHHhcCH
Confidence 7777777777777665433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.30 E-value=58 Score=32.68 Aligned_cols=267 Identities=15% Similarity=0.083 Sum_probs=142.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhC-------------CccCCcchH----HHHHH--HHHHcCCHHHHHHHHHHHHhCC
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLG-------------GVVSDGVVY----GSLMK--GYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~----~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
|....+.||++.|.+++++...... .+| +.... -.+.. ......++.+|..++.++...-
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 4445567788888777776622200 111 11111 11222 2345688999999888876543
Q ss_pred CC--CCCchh---hHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 78 SS--VKMSAV---ANNSVL-DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 78 ~~--~~~~~~---~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+. ..+... .|+.+- ......|+++.|.++.+.....-+. .........+..+..+..-.|++++|..+..+..
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-AAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 10 111111 233322 2345678899999999888765433 2222255677778888889999999998887765
Q ss_pred hCCCCCCHHH---HHHH--HHHHHHcCCHH--HHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 152 EYRCSPDTLS---FNNL--IDQLCKNGMLA--EAEELYGEMSDKG--VN----PDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 152 ~~~~~~~~~~---~~~l--~~~~~~~g~~~--~a~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..-.-+... |..+ ...+...|+.. +.+..|....... -+ +-..++..++.++.+ ++.+..-..
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear 601 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR 601 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence 5321223332 2222 23455667333 3333333332210 11 122344455555544 333333222
Q ss_pred HH----HHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh---cC--CCCHHHHHHHHH--HHHhcCCHHHHHHH
Q 015416 219 KM----VDSGLRPNLA--VYNRLVGKLVQVGMLDEAKSFFDIMVK---KL--KMDDASYKFMMK--ALSDGGKLDEILEI 285 (407)
Q Consensus 219 ~~----~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~ 285 (407)
.- ......|-.. .+..|+..+...|++++|...+.++.. .. .++..+-...+. .....|+...+...
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 22 2222122222 334678888899999999999999887 11 222222223333 33457888888777
Q ss_pred HHH
Q 015416 286 VGG 288 (407)
Q Consensus 286 ~~~ 288 (407)
..+
T Consensus 682 l~~ 684 (894)
T COG2909 682 LLK 684 (894)
T ss_pred HHh
Confidence 766
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.28 E-value=20 Score=27.25 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=50.1
Q ss_pred CcCCCCcCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHhhCC---ccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 015416 2 FVKGFVADPVV--YSYLMLGFVRDGDSDGVFRLFEELKEKLGG---VVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVG 75 (407)
Q Consensus 2 ~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 75 (407)
++.+..++..+ .|+++.-....+++...+.+++.+..-.+. ...+..+|..++.+.....- --.+..+|..+.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 34455555544 366666666666666666666665332100 01244556666666654444 3345556666655
Q ss_pred CCCCCCCchhhHHHHHHHHHhc
Q 015416 76 ENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.+ .+++..-|..++.++.+.
T Consensus 109 ~~--~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 ND--IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cC--CCCCHHHHHHHHHHHHcC
Confidence 44 455666666666655443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.27 E-value=38 Score=30.53 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF-EVNRVDDGATYFRKMVDS------GLRPNLAVYNRLVG 237 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~ 237 (407)
.+..+.+.|.+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++++..... ..-|+. .|+ ..-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S-~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFS-IAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHH-HHH
Confidence 35567788999999999999988765546777777777765 667777777777765541 012332 333 333
Q ss_pred HHHhcCCH---------------HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 238 KLVQVGML---------------DEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 238 ~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
++...++. +.|...+.+.... -+.+...|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~---fP~vl~~Ll~~l 234 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR---FPWVLVPLLDKL 234 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHH---hHHHHHHHHHHh
Confidence 34444444 7788887777664 334445555544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.97 E-value=4 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKL 106 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (407)
...+.++|+..|..+++..++.+.-..++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655432111122344455555555655555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.93 E-value=20 Score=34.94 Aligned_cols=185 Identities=17% Similarity=0.235 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH----------HHHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS----------FNNLIDQLC 170 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~ 170 (407)
++-...+.+|..+--.|+.+ ...+...++-.|....+++..+++.+.+... ||..- |...++--.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL--~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRN 254 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVL--HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRN 254 (1226)
T ss_pred HHHHHHHHHHHhhcCCcccc--CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccC
Confidence 34455677888776666555 3345667888899999999999999998774 44321 222223233
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCCCHHH-----HHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 171 KNGMLAEAEELYGEMSDK--GVNPDEYT-----YGLL--MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~--~~~p~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+-|+-++|+...-.+.+. .+.||... |.-+ -+.|...+..+.|.+.|++..+ +.|+...-..+...+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 457888888887777643 24555332 2211 1234456677889999999887 56665533333333333
Q ss_pred cC-CHHHHHHHHHHHHh-----cCCCC---HHHHH---HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 242 VG-MLDEAKSFFDIMVK-----KLKMD---DASYK---FMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 242 ~g-~~~~A~~~~~~~~~-----~~~~~---~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.| +++...++-.-... +.+-. ..-|. ..+.+-.-.+++.+|++.-+.|.+.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 33 23322222111111 11111 11121 1223334567888888888888775
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=81.70 E-value=67 Score=33.06 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=64.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHH----HHcC---CHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY----FMKG---MEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
=+++.....++.|+..|+++....||..-.-.....++-.. ...| .+++|+.-|+.+...- --.--|..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV----GAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----CCchHHHh
Confidence 36777888999999999999996555433333222222222 2234 4778888888876432 12233555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPK 118 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 118 (407)
-..+|.+.|++++-++.+.-..++.++.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 55678899999999999998888766543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=81.67 E-value=14 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
|......+...+...|+++.|++.+-.+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444445555555555555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.66 E-value=49 Score=31.43 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYF-MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
......=.+.|..+.+..+|++-+. +++.+...|......+. ..|+.+.....|+.+......--.+...|...+.
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 3344444455666666666666665 45556666655444333 3355555556666555432111222334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (407)
--..++++.....++++.+
T Consensus 160 ~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccccHHHHHHHHHHHH
Confidence 4444445555554444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.22 E-value=0.55 Score=35.66 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555555555555666666554433445555666666666655555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.65 E-value=3.4 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566777777777777777777653
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.61 E-value=3 Score=36.25 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=46.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|.++.|++.|...++.. ++....|..-..++.+.+++..|++-+.......+....-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666655532 333344555555556666666666666555553333344444444445556666666666
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
|..+.+.
T Consensus 205 l~~a~kl 211 (377)
T KOG1308|consen 205 LALACKL 211 (377)
T ss_pred HHHHHhc
Confidence 6666654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=80.22 E-value=16 Score=25.21 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=7.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 015416 273 LSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~ 290 (407)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 333444444444444443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.15 E-value=32 Score=28.30 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHh--cCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 015416 231 VYNRLVGKLVQVGMLD-------EAKSFFDIMVK--KLKM---D-DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF 297 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 297 (407)
.+..+...|...|+.+ .|.+.|.+... ..+. + ......++....+.|+.++|.+.|.+++...+...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4555666677777744 44555555544 1111 2 33455566777889999999999999998754333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 3e-14
Identities = 27/263 (10%), Positives = 65/263 (24%), Gaps = 17/263 (6%)
Query: 107 FDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDA---IEVFRKMGEYRCSPDTLSFN 163
++ + + +L+ + A + V + R +N
Sbjct: 110 VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYN 169
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA-TYFRKMVD 222
++ + G E + + D G+ PD +Y + ++ +M
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 223 SGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEI 282
GL+ L+ + + +L ++ +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 283 LEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK------------- 329
+ L F ++L + + E+ + E K K
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKAL 349
Query: 330 AEAKAREAEAAEAAKRSARAAIA 352
A E R ++
Sbjct: 350 CRALRETKNRLEREVYEGRFSLY 372
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 2e-11
Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 7/172 (4%)
Query: 37 KEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN-NSVLDALC 95
+ + + K + A G+ K+ + N+V+
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE-VFRKMGEYR 154
G F E + + +K+ P +L S+ Q + IE +M +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTP-----DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206
L L+ + + +L ++ S P L+ +
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 9e-05
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 4/120 (3%)
Query: 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237
A L +P E L+ +D + + L
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 238 KLVQVGMLDEAKSFFDIMVKKLK----MDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+ L A + + + + Y +M + G E++ ++ + D G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 34/236 (14%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ G E A + + + + + D +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTL------- 58
Query: 117 PKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLC 170
A+ +++ + + Y +G+ ++AIE +R + PD + NL L
Sbjct: 59 ----AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALV 112
Query: 171 KNGMLAEAEELYGEMSDKGV--NPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
G + A + Y + NPD Y L + + R+++ + K ++ +P
Sbjct: 113 AAGDMEGAVQAY----VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP 166
Query: 228 NLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDE 281
N A ++ L G + A F+ V L + +Y + L + D
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-TLDPNFLDAYINLGNVLKEARIFDR 221
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 34/236 (14%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
G EEA CY +A+ + AVA +++ G+ A+ F++
Sbjct: 145 LKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVFNAQGEIWLAIHHFEK------- 194
Query: 117 PKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLC 170
AV L ++ + + F A+ + + P+ + NL
Sbjct: 195 ----AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYY 248
Query: 171 KNGMLAEAEELYGEMSDKGV--NPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
+ G++ A + Y + + P Y L +A E V + + + L P
Sbjct: 249 EQGLIDLAIDTY----RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCP 302
Query: 228 NLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM-KALSDGGKLDE 281
A N L + G ++EA + + ++ + A+ + L GKL E
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 19/194 (9%)
Query: 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152
G F+ A + ++ + P N G +++ + R + +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQE--PD----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 153 YRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV--NPD-EYTYGLLMDACFEVN 208
P +++NL + + G L EA E Y + PD Y L A
Sbjct: 62 QN--PLLAEAYSNLGNVYKERGQLQEAIEHY----RHALRLKPDFIDGYINLAAALVAAG 115
Query: 209 RVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYK 267
++ + + P+L V + L L +G L+EAK+ + ++ ++
Sbjct: 116 DMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 268 FMMKALSDGGKLDE 281
+ + G++
Sbjct: 174 NLGCVFNAQGEIWL 187
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 22/184 (11%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ + A+ Y A+ + + AV + ++ G D A+ + R E P
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQP 268
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGML 175
++ +A+ +G +A + + P S NNL + + G +
Sbjct: 269 H-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNI 321
Query: 176 AEAEELYGEMSDK--GVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-V 231
EA LY K V P+ + L + ++ + ++++ + + P A
Sbjct: 322 EEAVRLY----RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADA 375
Query: 232 YNRL 235
Y+ +
Sbjct: 376 YSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 15/158 (9%)
Query: 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188
+A G F+ A ++ PD T L + L +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFS----TL 58
Query: 189 GV--NPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGM 244
+ NP Y L + E ++ + ++R + L+P+ Y L LV G
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGD 116
Query: 245 LDEAKSFFDIMVKKLKMDDASYKFMM-KALSDGGKLDE 281
++ A + + + D + + L G+L+E
Sbjct: 117 MEGAVQAYVSAL-QYNPDLYCVRSDLGNLLKALGRLEE 153
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-10
Identities = 35/238 (14%), Positives = 64/238 (26%), Gaps = 31/238 (13%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR--MKNEH 114
G + + N+ V + AV +V K EA + F + +
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT-LSFNNLIDQLCKNG 173
P ++ A + +G AI + R T L + L Q + G
Sbjct: 406 FGP--------AWIGFAHSFAIEGEHDQAISAYTTA--ARLFQGTHLPYLFLGMQHMQLG 455
Query: 174 MLAEAEELYGEMSDK--GVNP-DEYTYGLLMDACFEVNRVDDGATYFRK-----MVDSGL 225
+ A E + D L F + + +F+
Sbjct: 456 NILLANEYL----QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Query: 226 RPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS-YKFMMKALSDGGKLDE 281
A + L ++ M D A + L +DA+ + +
Sbjct: 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQ-GLLLSTNDANVHTAIALVYLHKKIPGL 568
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 22/189 (11%), Positives = 53/189 (28%), Gaps = 26/189 (13%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR--MKNEH 114
+ ++G ++A+ Y A + + + G A + ++
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473
Query: 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK-----MGEYRCSPD-TLSFNNLIDQ 168
+P L LG + + AI F+ ++ NL
Sbjct: 474 DP--LLLNELGVV------AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525
Query: 169 LCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
K M A + + ++ ++ + + T+ + + + P
Sbjct: 526 YRKLKMYDAAIDALNQG--LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP 581
Query: 228 N--LAVYNR 234
N +A
Sbjct: 582 NEIMASDLL 590
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 12/234 (5%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVK------MSAVANNSVLDALCNNGKFDEALKLFDRM 110
Y G A + N S V AL G+ + K
Sbjct: 127 YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186
Query: 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNLIDQ- 168
+ + + Y F A E +++ +F+ L+
Sbjct: 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA--LMVDAKCYEAFDQLVSNH 244
Query: 169 -LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
L + +L K + +L A + ++ GL
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN-GLEK 303
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
+ + L + + +++ + Y + +L + G+ ++
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 26/217 (11%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL------DALCNNGKFDEALKLFDRM 110
+KG E A+EC +A S++ + G+ + D++
Sbjct: 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120
Query: 111 ----KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-- 164
+ +P + + L CG + + A F K P F +
Sbjct: 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA--LEKKPKNPEFTSGL 178
Query: 165 --LIDQLCKNGMLAEAEELYGEMSDKGVNPDE----YTYGL-LMDACFEVNRVDDGATYF 217
+L A + + +NPD L L E +G
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIR--LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLV 236
Query: 218 RKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+ ++ P + V + D+A
Sbjct: 237 EEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 17/202 (8%)
Query: 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFD 108
+L +G EEA+ Y +A+ A A++++ L GK EAL +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLID 167
+P +++ M + + A++ + + + +P + +NL
Sbjct: 68 EAI-RISPT-----FADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLAS 119
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226
+G + EA Y + PD Y L V D +K+V +
Sbjct: 120 IHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS--IV 175
Query: 227 PNLAVYNRLVGKLVQVGMLDEA 248
+ NRL ML
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPL 197
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 3e-08
Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 16/192 (8%)
Query: 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152
G +EA++L+ + E P A + +A QG+ ++A+ +++
Sbjct: 18 IKREQGNIEEAVRLYRKAL-EVFPEFAAAHSN-----LASVLQQQGKLQEALMHYKEAIR 71
Query: 153 YRCSPDT-LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRV 210
P +++N+ + L + + A + Y +NP + L + +
Sbjct: 72 IS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNI 127
Query: 211 DDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269
+ +R + L+P+ Y L L V + +V + D +
Sbjct: 128 PEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV-SIVADQLEKNRL 184
Query: 270 MKALSDGGKLDE 281
L
Sbjct: 185 PSVHPHHSMLYP 196
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGE 184
S N +A+ QG ++A+ ++RK P+ + +NL L + G L EA Y E
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 185 MSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQV 242
++P Y + + E+ V + + + + P A ++ L
Sbjct: 69 AIR--ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDS 124
Query: 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284
G + EA + + +K +Y + L + E
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-08
Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 26/221 (11%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKN--EH 114
F EA+E +N+ + + S N K+D A K + +
Sbjct: 13 LFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNG 173
K F +G+ AI+ ++ + + + G
Sbjct: 70 TKAKSAD-----FEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKG 122
Query: 174 MLAEAEELYGEMSDKGV--NPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-- 228
A + +K + + + L A + + F K+++ L+PN
Sbjct: 123 NFPLAIQYM----EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIY 176
Query: 229 LAVYNR--LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYK 267
+ R AK +++ +++ A YK
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 34/210 (16%)
Query: 56 GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MKN 112
GY +G E+A +A+ + S SA A+ ++ + A + + + +
Sbjct: 46 GYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 113 E----HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLID 167
N N G F Q R+++A + + + P+ + F NL
Sbjct: 103 RNARVLN-------NYGGF------LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149
Query: 168 QLCKNGMLAEAEELYGEMSDKGV--NPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224
+ A+A+E + +K + N + + D ++ Y+
Sbjct: 150 VSLQMKKPAQAKEYF----EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ-- 203
Query: 225 LRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
A + D A S+
Sbjct: 204 GGGQNARSLLLGIRLAKVFEDRDTAASYGL 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 62/408 (15%), Positives = 113/408 (27%), Gaps = 134/408 (32%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA-M 67
D V + + + + V + EE+ + Y LM + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI------N---YKFLMSPIKTEQRQPSMMT 109
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEA----LKLFDRMKN---EHNPPKR 119
Y E D L N+ F + L+ + +++ E P K
Sbjct: 110 RMYIEQR-----------------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 120 LAVNLGSFNVMADGYCGQGRFKD--AIEVFR---------------KMGEYRCSPDTLS- 161
+ ++ G + G G K A++V + L
Sbjct: 153 VLID-G----VL-G-SG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
L+ Q+ N + SD N R+ R+++
Sbjct: 202 LQKLLYQIDPN---------WTSRSDHSSNIKL--------------RIHSIQAELRRLL 238
Query: 222 DSGLRPN-LAVYNRLVGKLVQVGMLDE---AKSF--FDIMVKKL-------KMDDAS--- 265
S N L LV L AK++ F++ K L D S
Sbjct: 239 KSKPYENCL-----LV--------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 266 -YKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK---------GELSKEG-- 313
+ S DE+ ++ L + +E + E ++G
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 314 REEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAI---ASLIPSK 358
+ + K E+ E AE K R ++ ++ IP+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 62 MEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MKNEHNPP 117
A+E Y +G + +V A N++ GK+ +A L+ +E
Sbjct: 149 YYRRALEIYATRLGPDDPNV---AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205
Query: 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC----SPDTL-SFNNLIDQLCKN 172
N + + + + +D+ Y+ SP + +L +
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265
Query: 173 GMLAEAEELY 182
G L A L
Sbjct: 266 GKLEAAHTLE 275
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 22/151 (14%)
Query: 47 GVVYGSLMKGYFMK--GMEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNN-GKFDE 102
V+YG G + + + + A+E + +G+ V NN L LC N GK +E
Sbjct: 92 AVLYGKR--GKYKEAEPLCKRALEIREKVLGKFHPDVAKQL--NN--LALLCQNQGKAEE 145
Query: 103 ALKLFDR---MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK-MGEYRCS-- 156
+ R + P V + N +A Y QG+++DA ++++ +
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 157 ----PDTL-SFNNLIDQLCKNGMLAEAEELY 182
D + + ++ ++
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 62 MEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MKNEHNPP 117
+ ++A+E + G + V A N + + K+ EA L + ++ +
Sbjct: 23 LCKQALEDLEKTSGHDHPDV---ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS------PDTL-SFNNLIDQLC 170
AV + N +A Y +G++K+A + ++ E R PD NNL
Sbjct: 80 DHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138
Query: 171 KNGMLAEAEELY 182
G E E Y
Sbjct: 139 NQGKAEEVEYYY 150
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 98 GKFDEALKLFDR---MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK----- 149
A+ L + + + V N++A Y Q ++K+A +
Sbjct: 15 VPRGSAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKEAAHLLNDALAIR 73
Query: 150 ---MGEYRCSPDTL-SFNNLIDQLCKNGMLAEAEELY 182
+G+ P + NNL K G EAE L
Sbjct: 74 EKTLGK--DHPAVAATLNNLAVLYGKRGKYKEAEPLC 108
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 24/210 (11%), Positives = 52/210 (24%), Gaps = 20/210 (9%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V S G + + +A G VA S L +
Sbjct: 277 VAIASNSGGKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQRLLPVL 333
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLI 166
+ + P + +A G + + V + + +P+ ++ +
Sbjct: 334 CQA-HGLTPQQVVA-----IASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASNG 385
Query: 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGL 225
+ + + G+ P++ + V + GL
Sbjct: 386 GGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGL 441
Query: 226 RPNLAV--YNRLVGKLVQVGMLDEAKSFFD 253
P V + G + + S D
Sbjct: 442 TPQQVVAIASNGGG-RPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 24/208 (11%), Positives = 48/208 (23%), Gaps = 30/208 (14%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR 109
S G + + +A G VA S L + +
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 110 MKNEHNPPKRLAVNLGSFNVMA-----DGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFN 163
A L V+A G + + V + + +P ++
Sbjct: 302 -----------AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIA 348
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVD 222
+ + + + G+ P++ + V +
Sbjct: 349 SHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH- 405
Query: 223 SGLRPNLAV--YNRLVGKLVQVGMLDEA 248
GL P V + GK +
Sbjct: 406 -GLTPEQVVAIASHDGGKQAL-ETVQRL 431
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 21/211 (9%), Positives = 47/211 (22%), Gaps = 18/211 (8%)
Query: 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALK 105
V S G + + +A G VA S L
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ---QVVAIASHDGGKQALETVQRLLP 127
Query: 106 LFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNN 164
+ + + P + + G + + V + + +P+ ++ +
Sbjct: 128 VLCQA-HGLTP-----EQVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVVAIAS 179
Query: 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDS 223
+ + + G+ P + + V +
Sbjct: 180 NGGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-- 235
Query: 224 GLRPNLAV-YNRLVGKLVQVGMLDEAKSFFD 253
GL P V G + +
Sbjct: 236 GLTPQQVVAIASNGGGKQALETVQRLLPVLC 266
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 22/234 (9%), Positives = 50/234 (21%), Gaps = 32/234 (13%)
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+ + +A G VA S L + +
Sbjct: 222 ETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQRLLPVLCQ----------- 267
Query: 121 AVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGM 174
A L + + G + + V + + +P ++ +
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALET 325
Query: 175 LAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV-- 231
+ + + G+ P + + V + GL P V
Sbjct: 326 VQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPEQVVAI 381
Query: 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILE 284
+ GK + L + + + +L
Sbjct: 382 ASNGGGKQAL-ETVQRLLPVLCQAH-GLTPEQVVAIASHDGGKQALETVQRLLP 433
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 9/104 (8%)
Query: 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALK 105
V S G + + +A G VA S L
Sbjct: 343 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE---QVVAIASNGGGKQALETVQRLLP 399
Query: 106 LFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
+ + + P + +A G + + V +
Sbjct: 400 VLCQA-HGLTPEQVVA-----IASHDGGKQALETVQRLLPVLCQ 437
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 30/202 (14%), Positives = 58/202 (28%), Gaps = 22/202 (10%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ G + A+ + A+ EN A + G + AL+ + P
Sbjct: 15 LYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLV-ARTP 70
Query: 117 PKRLA-VNLGS-----FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQL 169
+ L + D G+G + A+ V + P
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVY 128
Query: 170 CKNGMLAEAEELYGEMSDKGV--NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
G +AE + + L + + R+D+ + K ++ P
Sbjct: 129 ALLGERDKAEASL----KQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALE--QAP 182
Query: 228 NLA-VYNRLVGKLVQVGMLDEA 248
+ R L+ G +EA
Sbjct: 183 KDLDLRVRYASALLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 7e-04
Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 41/210 (19%)
Query: 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVF 147
L G++D AL LF+R A+ + +A G A+E
Sbjct: 14 QLYALGRYDAALTLFER-----------ALKENPQDPEALYWLARTQLKLGLVNPALENG 62
Query: 148 RKMGEYRCSPD-TLSFNNL-----------IDQLCKNGMLAEAEELYGEMSDKGV--NPD 193
+ + P + L D+ G L +A + NP
Sbjct: 63 KTLVART--PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL----KDAERVNPR 116
Query: 194 EY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252
+ + D ++ + L + + L + +G LDEA + +
Sbjct: 117 YAPLHLQRGLVYALLGERDKAEASLKQALA--LEDTPEIRSALAELYLSMGRLDEALAQY 174
Query: 253 DIMVKKLKMDDAS-YKFMMKALSDGGKLDE 281
+ + D AL GK +E
Sbjct: 175 AKAL-EQAPKDLDLRVRYASALLLKGKAEE 203
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 28/225 (12%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+F+K +A E++ ++ + + + L + E K F +
Sbjct: 253 HFLKNNLLDAQVLLQESI----NLHPTPNSYIFLALTLADKENSQEFFKFFQK------- 301
Query: 117 PKRLAVNLG-----SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLC 170
AV+L ++ Y +K+A E F+K P+ + L L
Sbjct: 302 ----AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLY 355
Query: 171 KNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL 229
K G E+E + E K P + + D + L
Sbjct: 356 KQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR--LEEVQ 411
Query: 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274
+ +G L+ + +S D + +A+ K + KA
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 25/228 (10%)
Query: 33 FEELKEKLGGVVSDGVVYGSLMKGYFMK--GMEEEAMECYNEAVGENSSVKMSAVANNSV 90
+ L + L + S + K M + + +A+A
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN---AALALCYT 249
Query: 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
+A L +P S+ +A + ++ + F+K
Sbjct: 250 GIFHFLKNNLLDAQVLLQESI-NLHP------TPNSYIFLALTLADKENSQEFFKFFQKA 302
Query: 151 GEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV--NPD-EYTYGLLMDACFE 206
+ +P+ ++ + A+E + K NP+ Y Y L ++
Sbjct: 303 VDL--NPEYPPTYYHRGQMYFILQDYKNAKEDF----QKAQSLNPENVYPYIQLACLLYK 356
Query: 207 VNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+ + +F + P L V L G D A +D
Sbjct: 357 QGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 22/237 (9%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+F EA++ Y A+ + + V +++ + G ++ ++ + E P
Sbjct: 35 FFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKAL-EIKP 90
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
+ + A G F DA+ + D S ++++ +
Sbjct: 91 -----DHSKALLRRASANESLGNFTDAMFDLSVLSLNG-DFDGASIEPMLERNLNKQAMK 144
Query: 177 EAEELYGEMSDKGVNPD-----------EYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225
E + +G + L + + + D +
Sbjct: 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204
Query: 226 RPNLAVYNRLVGKLVQ-VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
Y L + M S + + + + L +
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 17/223 (7%)
Query: 66 AMECYNEAVGENSSVKMSAVANNSVL-DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A Y + E + + + L ++ + D + DR + L
Sbjct: 46 AQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLL 105
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+ A Y A+ + C + L K L A + +
Sbjct: 106 ----MAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKK 155
Query: 185 MSDKGVNPDEYTYGL---LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
M D+ + D L + ++ D F++M D P L + N +
Sbjct: 156 MQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212
Query: 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284
G + A+ + K + ++ GK E+
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 12/130 (9%)
Query: 62 MEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MKNEHNPP 117
+ A+E Y +G + +V A N++ GKF +A L+ +E
Sbjct: 175 YYQRALEIYQTKLGPDDPNV---AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC----SPDTL-SFNNLIDQLCKN 172
N + + +G+ KD G Y+ SP + NL +
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291
Query: 173 GMLAEAEELY 182
G AE L
Sbjct: 292 GKFEAAETLE 301
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 62 MEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNN-GKFDEALKLFDR---MKNEHNP 116
+ + A+E + +G++ V NN L LC N GK++E + R +
Sbjct: 133 LCKRALEIREKVLGKDHPDVAKQL--NN--LALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK-MGEYRCS------PDTL-SFNNLIDQ 168
P V + N +A Y QG+FK A ++++ + + + + ++
Sbjct: 189 PDDPNV-AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247
Query: 169 LCKNGMLAEAEELY 182
G +
Sbjct: 248 EECKGKQKDGTSFG 261
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 21/133 (15%)
Query: 64 EEAMECYNEAVGENSSVKMSAVAN--NSVLDALCNNGKFDEALKLFDR---MKNEHNPPK 118
Y + G A ++++ + G+++ A+ L + + +
Sbjct: 9 SGRENLYFQGGGYEIP----ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64
Query: 119 RLAVNLGSFNVMADGYCGQGRFKDAIEVFRK--------MGEYRCSPDTL-SFNNLIDQL 169
V N++A Y Q ++KDA + +G+ P + NNL
Sbjct: 65 HPDV-ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK--DHPAVAATLNNLAVLY 121
Query: 170 CKNGMLAEAEELY 182
K G EAE L
Sbjct: 122 GKRGKYKEAEPLC 134
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)
Query: 62 MEEEAMECYNEAVGEN-SSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MKNEHNPP 117
+ ++A+E + G + V A N + + K+ +A L + ++ +
Sbjct: 49 LCKQALEDLEKTSGHDHPDV---ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105
Query: 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK--------MGEYRCSPDTL-SFNNLIDQ 168
AV + N +A Y +G++K+A + ++ +G+ PD NNL
Sbjct: 106 DHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH--PDVAKQLNNLALL 162
Query: 169 LCKNGMLAEAEELY 182
G E E Y
Sbjct: 163 CQNQGKYEEVEYYY 176
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 32/213 (15%), Positives = 61/213 (28%), Gaps = 33/213 (15%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ ++ ++AM Y A + + A + F +
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKG---CHLPMLYIGLEYGLTNNSKLAERFFSQ------- 184
Query: 117 PKRLAVNLGSFNVMADGYCG-----QGRFKDAIEVFRKMGEYRCSPDTLS--------FN 163
A+++ + G G +K A + F E + N
Sbjct: 185 ----ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVD 222
NL K AEA + + + + P TY + + ++ YF +
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQA--LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298
Query: 223 SGLRPNLAVYNRLVGK-LVQVGMLDEAKSFFDI 254
LR + ++G + EA DI
Sbjct: 299 --LRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 27/249 (10%), Positives = 62/249 (24%), Gaps = 37/249 (14%)
Query: 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK-FDEALKLF 107
V+ E ++ V S + V+ +V G + A +
Sbjct: 61 VHIGT---LVELNKANELFYLSHKLVDLYPS---NPVSWFAVGCYYLMVGHKNEHARRYL 114
Query: 108 DR--MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT-LSFNN 164
+ + P ++ + + A+ + + L
Sbjct: 115 SKATTLEKTYGP--------AWIAYGHSFAVESEHDQAMAAYFTA--AQLMKGCHLPMLY 164
Query: 165 LIDQLCKNGMLAEAEELYGEMSDKGV--NP-DEYTYGLLMDACFEVNRVDDGATYFRK-- 219
+ + AE + + + P D + + F+ +F
Sbjct: 165 IGLEYGLTNNSKLAERFF----SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220
Query: 220 ------MVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS-YKFMMKA 272
+ + + N L ++ EA + L +AS Y +
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ-ALVLIPQNASTYSAIGYI 279
Query: 273 LSDGGKLDE 281
S G +
Sbjct: 280 HSLMGNFEN 288
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 32/213 (15%), Positives = 59/213 (27%), Gaps = 29/213 (13%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
EA + A S+ N K A+ + +P
Sbjct: 31 MLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHA-RMLDP 86
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK--------------MGEYRCSPDTLSF 162
++ +A + + A+ R + D L+
Sbjct: 87 -----KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141
Query: 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMV 221
+ E L + +NP++ + L N D A R+ V
Sbjct: 142 QSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199
Query: 222 DSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+ LRP+ A ++N+L L EA ++
Sbjct: 200 E--LRPDDAQLWNKLGATLANGNRPQEALDAYN 230
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 26/251 (10%), Positives = 65/251 (25%), Gaps = 37/251 (14%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR------- 109
+ A+ N A + + ++ + N + AL
Sbjct: 65 QAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 110 MKNEHNPPKRLAVNLGSFNVMADG--YCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLI 166
+ + + V++ NV ++ + +++ + E P+ +L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASLG 179
Query: 167 DQLCKNGMLAEAEELYGEMSDK--GVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDS 223
+ A + + PD+ + L NR + + + +D
Sbjct: 180 VLYNLSNNYDSAAANL----RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD- 234
Query: 224 GLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD------------IMVKKLKMDDASYKFMM 270
+ P V + + D A + + + F
Sbjct: 235 -INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293
Query: 271 KALSDGGKLDE 281
L+ + D
Sbjct: 294 MLLNVMNRPDL 304
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 36/239 (15%), Positives = 64/239 (26%), Gaps = 33/239 (13%)
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G + Y N M ++ EA F+ + + P +
Sbjct: 1 GHMLQNNTDYPFEA-NNP--YMYHENPMEEGLSMLKLANLAEAALAFEAV-CQAAPEREE 56
Query: 121 A-VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNLIDQLCKNGMLAEA 178
A +LG A+ + AI P + L A
Sbjct: 57 AWRSLG--LTQAE----NEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAA 108
Query: 179 E--------------ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224
+L V+ D+ N + T ++
Sbjct: 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-- 166
Query: 225 LRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS-YKFMMKALSDGGKLDE 281
+ PN A ++ L D A + V +L+ DDA + + L++G + E
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV-ELRPDDAQLWNKLGATLANGNRPQE 224
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 32/215 (14%), Positives = 62/215 (28%), Gaps = 31/215 (14%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+G A+ + AV ++ A + N + A+ R E P
Sbjct: 74 RLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRC-LELKP 129
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK--------------MGEYRCSPDTLSF 162
N + +A + + + A E+ R E
Sbjct: 130 -----DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY---TYGLLMDACFEVNRVDDGATYFRK 219
++ L + + E +EL+ ++P L D F
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242
Query: 220 MVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+ +RPN ++N+L L +EA + +
Sbjct: 243 ALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYR 275
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 29/214 (13%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
E A+ + + A ++ + N +A ++ + P
Sbjct: 108 QAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWL-RYTP 163
Query: 117 ----------PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL---SFN 163
LG + F + E+F P ++
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD--PTSIDPDVQC 221
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDK--GVNPDEY-TYGLLMDACFEVNRVDDGATYFRKM 220
L +G +A + + V P++Y + L N+ ++ +R+
Sbjct: 222 GLGVLFNLSGEYDKAVDCF----TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 221 VDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
++ L+P L + +G EA F
Sbjct: 278 LE--LQPGYIRSRYNLGISCINLGAHREAVEHFL 309
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-06
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAA 350
E + LQE SK +E EK +++ E R++E E K + R A
Sbjct: 93 EQRKRLQE--LDAASKVMEQE----WREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 22/230 (9%), Positives = 65/230 (28%), Gaps = 27/230 (11%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
F A+ ++ + A + G+ +A+ ++
Sbjct: 130 AFDGADYTAAITFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAA-SKLKS 185
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK-----------MGEYRCSPDTLSFNNL 165
N +F ++ Y G + ++ R+ Y+
Sbjct: 186 D-----NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240
Query: 166 IDQLCKNGMLAEAEELYGE-MSDKGVNPDEYT--YGLLMDACFEVNRVDDGATYFRKMVD 222
++L ++G +A Y M + + + + + + +++
Sbjct: 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300
Query: 223 SGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271
+ P+ + M DEA ++ ++ +D + ++
Sbjct: 301 --MEPDNVNALKDRAEAYLIEEMYDEAIQDYE-AAQEHNENDQQIREGLE 347
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/219 (11%), Positives = 54/219 (24%), Gaps = 41/219 (18%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
G +A+ ++ AV + + +A GK AL +
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTK------- 62
Query: 117 PKRLAVNLGSFNV-----MADGYCGQGRFKDAIEVFRK--------------MGEYRCSP 157
+ L QG+ +A + F+K + +
Sbjct: 63 ----VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118
Query: 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217
+ + A ++ + V E L + + +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELRAECFIKEGEPRKAISDL 177
Query: 218 RKMVDSGLRPNL--AVYNRLVGK-LVQVGMLDEAKSFFD 253
+ L+ + A Y Q+G + + S
Sbjct: 178 KAASK--LKSDNTEAFYKI--STLYYQLGDHELSLSEVR 212
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 22/203 (10%), Positives = 60/203 (29%), Gaps = 21/203 (10%)
Query: 93 ALCNNGKFDEALKLFDR----------MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
A G+ +A+ F + M N K ++ +A Y +
Sbjct: 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72
Query: 143 AIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLL 200
A ++++ + +P + + G +A +Y ++ + D L
Sbjct: 73 AYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFL 128
Query: 201 MDACFEVNRVDDGA-TYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
+ + + K + + R + ++A++ ++
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI-L 185
Query: 259 LKMDDASYKFMMKALSDGGKLDE 281
+ K + K L +++
Sbjct: 186 RFPSTEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 28/195 (14%)
Query: 57 YFMKGMEEEAMECYNEAV-------------GENSSVKMSAVANNSVLDALCNNGKFDEA 103
G +A+ + + + + + ++S+ + A N +D+A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163
+ + + P N+ A+ +G+ KDA+ ++ K+ + D L+ N
Sbjct: 74 YLFYKELL-QKAPN-----NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAAN 125
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGV--NPD-EYTYGLLMDACFEVNRVDDGATYFRKM 220
+ E ++L E K + +Y + R + +K+
Sbjct: 126 IFLGNYYYLTAEQEKKKL--ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 221 VDSGLRPNLAVYNRL 235
+ P+ L
Sbjct: 184 IL--RFPSTEAQKTL 196
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 32/214 (14%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR 109
G M G E+A E + +A+ EN A+ + + L + + + AL +D+
Sbjct: 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDK 82
Query: 110 MKNEHNPPKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFN 163
A+ L ++ + Y + +K+A ++F K + F
Sbjct: 83 -----------ALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFY 129
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGV--NPDEY-TYGLLMDACFEVNRVDDGATYFRKM 220
L L K A + V N ++ +D+ + F +
Sbjct: 130 MLGTVLVKLEQPKLALPYL----QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185
Query: 221 VDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+ P A + ++A D
Sbjct: 186 TE--QDPGHADAFYNAGVTYAYKENREKALEMLD 217
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 27/209 (12%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ E +++A+ +S+ ++ +D+A K FD+ K E +P
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDP 335
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGML 175
+ +A + +F D +F + R P+ N + L
Sbjct: 336 ENIFP-----YIQLACLAYRENKFDDCETLFSE--AKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 176 AEAEELYGEMSDKGVNPDE----------YTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225
+A + Y + + L+ V + K L
Sbjct: 389 DKALKQYDLAIE--LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--L 444
Query: 226 RPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
P L +Q +DEA + F+
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 33/218 (15%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
F+ ++A + +++A + + + KFD+ LF K P
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPE---NIFPYIQLACLAYRENKFDDCETLFSEAK-RKFP 369
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD----------TLSFNNLI 166
N A+ + F A++ + E + L+
Sbjct: 370 EAPEV-----PNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLL 422
Query: 167 DQLCKNGMLAEAEELYGEMSDKG--VNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDS 223
+ EA L +K ++P E L + +D+ T F + D
Sbjct: 423 TRNPTVENFIEATNLL----EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD- 477
Query: 224 GLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260
L + + + + + ++ KK++
Sbjct: 478 -LARTMEEKLQAIT--FAEAAKVQQRIRSDPVLAKKIQ 512
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 38/240 (15%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
++ +EA+E YN+A + ++ + N + A G+++ A+ +
Sbjct: 15 FYKARQFDEAIEHYNKAWELHK--DITYLNNRAA--AEYEKGEYETAISTLND------- 63
Query: 117 PKRLAVNLGS-----FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171
AV G + V++ + G + +K EY +L+ + D L K
Sbjct: 64 ----AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY--QKSLTEHRTADILTK 117
Query: 172 NGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA 230
+ + + VNP++ L F + + + +M+ P A
Sbjct: 118 LRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDA 173
Query: 231 V--YNRLVGK-LVQVGMLDEAKSFFD--IMVKKLKMDDA-SYKFMMKALSDGGKLDEILE 284
NR L ++ EA + + I + + +Y A + LE
Sbjct: 174 RGYSNR--AAALAKLMSFPEAIADCNKAI---EKDPNFVRAYIRKATAQIAVKEYASALE 228
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR 109
Y + K + G + + + S + + D L ++ LK +
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQK---SLTEHRTA-DILTKLRNAEKELKKAEA 130
Query: 110 MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169
+ NP K + Y + + +A++ + +M + R D ++N L
Sbjct: 131 -EAYVNPEKAEE-----ARLEGKEYFTKSDWPNAVKAYTEMIK-RAPEDARGYSNRAAAL 183
Query: 170 CKNGMLAEAEELY 182
K EA
Sbjct: 184 AKLMSFPEAIADC 196
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 29/241 (12%)
Query: 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKL 106
GV+Y SL G+ A +++A+ N + L G FD A +
Sbjct: 50 GVLYDSL-------GLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEA 99
Query: 107 FDRMKNEHNPPKRLA-VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-DTLSFNN 164
FD + E +P A +N G + GR K A + Y+ P D
Sbjct: 100 FDSVL-ELDPTYNYAHLNRG--IALYY----GGRDKLAQDDLLA--FYQDDPNDPFRSLW 150
Query: 165 LIDQLCKNGMLAEAEELYGEMSDK--GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222
L K +A+E+ + +K + E ++
Sbjct: 151 LYLAEQKLD-EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209
Query: 223 SGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS-YKFMMKALSDGGKLD 280
L +L+ L + +G LD A + F + + + +++ + LS G+
Sbjct: 210 --LAEHLSETNFYLGKYYLSLGDLDSATALFK-LAVANNVHNFVEHRYALLELSLLGQDQ 266
Query: 281 E 281
+
Sbjct: 267 D 267
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFD 108
+ L Y +A +A+ + + +A + D+A + F
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 109 R---MKNE----HNPPKRLAVNLGSFNVMADGYCGQ-GRFKDAIEVFRKMGEYRCSPD-T 159
+ +K + +N N G F CG+ R +++ F K P
Sbjct: 67 QALSIKPDSAEINN-------NYGWF------LCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 160 LSFNNLIDQLCKNGMLAEAEELY 182
++ N K G AE
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYL 136
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 27/211 (12%), Positives = 56/211 (26%), Gaps = 26/211 (12%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS-----FNVMADGYCGQ 137
+ + + +A + A+ + V A+ Y
Sbjct: 7 VSNIKTQLAMEYMRGQDYRQATASIED-----------ALKSDPKNELAWLVRAEIYQYL 55
Query: 138 GRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKN-GMLAEAEELYGEMSDKGVNPD-E 194
A E FR+ + PD NN LC AE+ + + P
Sbjct: 56 KVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV-YNRLVGKLVQVGMLDEAKSFFD 253
+ + Y ++ + +P + L + G L +A +F
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFK 171
Query: 254 IMVKKLKMDDASYKFMMKALSDGGKLDEILE 284
++++ A ++ L
Sbjct: 172 KYQSRVEVLQADD--LLLGWKIAKALGNAQA 200
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-05
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G+E +A+ Y +A+ K A + G++ +A + + + L
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
V M GR++ +E+ K
Sbjct: 64 RVFYA----MV--LYNLGRYEQGVELLLK 86
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 30/210 (14%), Positives = 54/210 (25%), Gaps = 26/210 (12%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+G + A+ ++ A A + N A+ R E P
Sbjct: 75 RLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRC-LELQP 130
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGML 175
NL + +A Y +DA E + + P N +
Sbjct: 131 -----NNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRM 183
Query: 176 AEAEELYGEMSD-----------KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224
+++ + G D L + F +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-- 241
Query: 225 LRPNLA-VYNRLVGKLVQVGMLDEAKSFFD 253
+RP ++NRL L +EA +
Sbjct: 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYT 271
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 27/207 (13%), Positives = 62/207 (29%), Gaps = 20/207 (9%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
E+ A+ + + + A ++ + N +A + + NP
Sbjct: 109 QAENENEQAAIVALQRCLELQPN---NLKALMALAVSYTNTSHQQDACEALKNWI-KQNP 164
Query: 117 PKRLAVN-----LGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNLIDQLC 170
+ V G M+ + E++ + D L
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224
Query: 171 KNGMLAEAEELYGEMSDK--GVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
+G A + + + V P++Y + L +R ++ + + ++ ++P
Sbjct: 225 LSGEFNRAIDAF----NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQP 278
Query: 228 NLA-VYNRLVGKLVQVGMLDEAKSFFD 253
L + +G EA S F
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFL 305
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 34/203 (16%)
Query: 57 YFMKGMEEEAMECYNEAVGENS--SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114
G +EA A+ E VA + + + L G+ +L L + +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174
L S ++ QG + A E
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQE-------------------------- 117
Query: 175 LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN----LA 230
+A +L E + + E+ + + R+D+ R ++ L
Sbjct: 118 --KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175
Query: 231 VYNRLVGKLVQVGMLDEAKSFFD 253
L+ + G LD A+S +
Sbjct: 176 CLAMLIQCSLARGDLDNARSQLN 198
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/153 (11%), Positives = 42/153 (27%), Gaps = 8/153 (5%)
Query: 35 ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEA--VGENSSVKMSAVANNSVLD 92
EL + + ++ Y G ++ A+E + +A V + +
Sbjct: 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 93 ALCNNGKFDEALKLFDR---MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
LC G+ +A + + + + + + + D + F K
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL-FLFLQAVYKETVDERKIHDLLSYFEK 328
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
+ + + +A Y
Sbjct: 329 KNLHAYIEACA--RSAAAVFESSCHFEQAAAFY 359
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 25/206 (12%), Positives = 50/206 (24%), Gaps = 27/206 (13%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR 109
S G + + +A G VA S + L + +
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPD---QVVAIASNIGGKQALETVQRLLPVLCQ 285
Query: 110 MKNEHNPPKRLAVNLGSFNVMA-----DGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFN 163
A L V+A G + + V + + +PD ++
Sbjct: 286 -----------AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQ--AHGLTPDQVVAIA 332
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY-TYGLLMDACFEVNRVDDGATYFRKMVD 222
+ + + + G+ PD+ + V +
Sbjct: 333 SHDGGKQALETVQRLLPVLCQ--AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH- 389
Query: 223 SGLRPNLAVYNRLVGKLVQVGMLDEA 248
GL P+ V G + +
Sbjct: 390 -GLTPDQVVAIASNGGKQALETVQRL 414
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/156 (12%), Positives = 43/156 (27%), Gaps = 9/156 (5%)
Query: 35 ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVG---ENSSVKMSAVANNSVL 91
E + + EA++ +A EN + +A+A +
Sbjct: 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123
Query: 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151
L +A+ L+ + +RL + Q +F +A +K
Sbjct: 124 K-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182
Query: 152 E-YRCSPDTLS----FNNLIDQLCKNGMLAEAEELY 182
Y+ + + + A++
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 15/144 (10%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVG---ENSSVKMSAVANNSVLDALCNNGKFDEALKL 106
Y + E+A + Y + N S+ +A A L + + EA++
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 107 FDRMKN---EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS-- 161
++ E+ P A+ L + + A+ ++++ + + L
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLME----PLDLSKAVHLYQQAAAVFENEERLRQA 154
Query: 162 ---FNNLIDQLCKNGMLAEAEELY 182
L + EA
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASL 178
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 26/134 (19%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR---MK-- 111
Y G + E ++ + + + K+D A+ L +
Sbjct: 52 YVKTGAVDRGTELLERSLADAPD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 112 --NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQ 168
N LG + + GRF +AI+ F+ R P+ +
Sbjct: 109 NFNVRF-------RLG--VALDN----LGRFDEAIDSFKIALGLR--PNEGKVHRAIAFS 153
Query: 169 LCKNGMLAEAEELY 182
+ G EA +
Sbjct: 154 YEQMGRHEEALPHF 167
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 4e-04
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 22/132 (16%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ G +A+ + ++ + A G D +L +R
Sbjct: 18 HAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLER------- 67
Query: 117 PKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLC 170
++ V+ Y ++ A+ + K+ E P L L
Sbjct: 68 ----SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALD 121
Query: 171 KNGMLAEAEELY 182
G EA + +
Sbjct: 122 NLGRFDEAIDSF 133
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 35 ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEA------VGENSSVKMSAVANN 88
+ + G ++ +L + G E+A E Y +GE A +
Sbjct: 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE---AQSCY 307
Query: 89 SVLDALCNNGKFDEALKLFDR---MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE 145
S+ + +F+ A++ +R + E A + + + + G + A++
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR---ACWSLGNAHSAIGGHERALK 364
Query: 146 VFRK 149
+
Sbjct: 365 YAEQ 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 31/264 (11%), Positives = 78/264 (29%), Gaps = 45/264 (17%)
Query: 34 EELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAV-------GENSSVKMSAVA 86
E + + + + + Y+ +M+ +A N +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL---LQC 186
Query: 87 NNSVLDALCNNGKFDEALKLFDR---MKNEHNPPKRLAV---NLGSFNVMADGYCGQGRF 140
++ + ++++A+ F + M P+ + N+G Q ++
Sbjct: 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC------KNSQSQY 240
Query: 141 KDAIE-------VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY-------GEMS 186
+DAI VF + P + K G + +A E + +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAY--FLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL-VQVGML 245
D + L + + + + L +L + V K +
Sbjct: 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES---KMLYADLEDFAIDVAKYYHERKNF 355
Query: 246 DEAKSFFDIMV---KKLKMDDASY 266
+A ++F + + ++ + Y
Sbjct: 356 QKASAYFLKVEQVRQLIQGGVSLY 379
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/165 (13%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 35 ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEA------VGENSSVKMSAVANN 88
L LG + G +G+L +++ G +A+ + + G+ ++ A +
Sbjct: 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE---RRAYS 227
Query: 89 SVLDALCNNGKFDEALKLFDR---MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE 145
++ +A G+F+ A + + + + + A + S + + Y ++ AI+
Sbjct: 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS---LGNTYTLLQDYEKAID 284
Query: 146 -------VFRKMGEYRCSPDT-LSFNNLIDQLCKNGMLAEAEELY 182
+ +++ + + +L + G +A
Sbjct: 285 YHLKHLAIAQELKD---RIGEGRACWSLGNAYTALGNHDQAMHFA 326
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 12/120 (10%)
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+ AV VA + DA G R +P +
Sbjct: 6 PRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRG-LALHPG-----H 56
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS-FNNLIDQLCKNGMLAEAEELY 182
+ + Q R +A + ++ + P+ L L G A Y
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAY 114
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 7e-04
Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDA-------LCNNGKFDEALKLFDRMKNEHNP 116
E +A+ +++K + ++D N G+ +EA F + ++
Sbjct: 9 ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYDF 67
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
N+ +A Y + +F+ A +++ D + +
Sbjct: 68 -----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPL 121
Query: 177 EAEELY 182
+A+E +
Sbjct: 122 KAKECF 127
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 38.5 bits (91), Expect = 7e-04
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
Y+ +G +EA+E Y +A+ + SA A ++ +A G +DEA++ + +
Sbjct: 11 YYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQK------- 60
Query: 117 PKRLAVNL-----GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLC 170
A+ L ++ + + Y QG + +AIE ++K E P ++ NL +
Sbjct: 61 ----ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 114
Query: 171 KNGMLAEAEELY 182
K G EA E Y
Sbjct: 115 KQGDYDEAIEYY 126
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.81 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.77 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.75 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.74 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.7 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.69 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.68 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.64 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.62 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.57 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.54 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.54 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.51 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.49 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.47 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.46 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.46 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.41 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.37 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.36 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.34 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.34 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.33 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.33 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.3 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.27 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.26 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.23 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.22 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.16 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.16 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.12 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.12 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.09 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.08 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.08 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.08 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.05 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.05 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.04 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.04 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.04 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.01 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.0 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.0 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.99 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.99 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.97 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.97 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.97 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.96 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.92 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.88 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.88 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.87 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.86 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.86 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.85 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.81 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.8 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.74 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.74 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.73 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.71 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.64 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.56 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.36 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.21 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.2 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.99 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.63 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.37 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.16 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.92 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.85 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.07 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.7 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.61 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.5 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.48 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.93 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.65 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.55 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.98 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.65 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.36 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.94 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.25 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.18 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.64 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.98 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.05 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.92 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.67 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.64 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.3 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=258.82 Aligned_cols=346 Identities=9% Similarity=-0.014 Sum_probs=298.7
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHH------------------------------
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSL------------------------------ 53 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------------------------------ 53 (407)
.|.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.+...+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 3566789999999999999999999999999999862 2233443333
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 54 --------MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 54 --------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+..|.+.|++++|+++|+++... +++..+|..++.+|.+.|++++|..+|+++.+.++. +..
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 340 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY------NLD 340 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc------cHH
Confidence 45566789999999999998764 568999999999999999999999999999987654 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|.+.|++++|..+|+++.... +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999999999999999998754 5678899999999999999999999999998742 346889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+.++.+|..++.+|.+.|++++|+++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999864 457889999999999999999999999999997788999999999999999999999999
Q ss_pred HHHHHhcC---CCCCc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Q 015416 286 VGGILDDG---GIEFS--EELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360 (407)
Q Consensus 286 ~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (407)
|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++.+.. |.....+..++..+.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----------------TNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHH
Confidence 99998752 34566 6799999999999999999999999987654 334566677777777
Q ss_pred CCccccccccccChhhHhhHHHHhcCcccc
Q 015416 361 DKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 361 ~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
..+ ++++|+...+.+.....+
T Consensus 562 ~~g---------~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 562 HKK---------IPGLAITHLHESLAISPN 582 (597)
T ss_dssp HTT---------CHHHHHHHHHHHHHHCTT
T ss_pred HhC---------CHHHHHHHHHHHHhcCCC
Confidence 788 999999999888776544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=251.23 Aligned_cols=303 Identities=8% Similarity=0.013 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+.+|+++...+ +.+..++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 343 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYP 343 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHH
Confidence 4445666788888999999999999998873 5799999999999999999999999999999877 44788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.+|.+.|++++|..+|+++.+..+. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHS 416 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999976543 67789999999999999999999999998864 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999864 4578899999999999999999999999999864 45788999999999999999999
Q ss_pred HHHHHHHHhc-----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 249 KSFFDIMVKK-----LKMD--DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 249 ~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
..+|+++.+. ..|+ ..+|..++.+|.+.|++++|+++|+++.+.. +.+...|..++.+|.+.|++++|.+.
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999872 2555 7899999999999999999999999999874 66888999999999999999999999
Q ss_pred HHHHHHhh
Q 015416 322 MEKKEREK 329 (407)
Q Consensus 322 ~~~~~~~~ 329 (407)
++++.+..
T Consensus 573 ~~~~l~~~ 580 (597)
T 2xpi_A 573 LHESLAIS 580 (597)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987755
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-29 Score=224.35 Aligned_cols=339 Identities=15% Similarity=0.064 Sum_probs=288.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|...++...+. .|.+..+|..++.++.+.|++++|+..|++++..+ |.+..+|.
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 105 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYI 105 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---cchHHHHH
Confidence 4556677788888999999999999998885 45678899999999999999999999999999876 44677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.... |.+..+|..++..
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNPD------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTT------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999887654 55678889999999999999999999998864 4567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+..++..++..|...|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 3357788889999999999999999999998753 34577899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
...|+++....|.++.++..++.++.+.|++++|+..|+++++.. +.+...+..++.++.+.|++++|...++++.+.
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999777788899999999999999999999999999873 677888999999999999999999999988764
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCccc
Q 015416 329 KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEV 389 (407)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~ 389 (407)
. |.....+..++..+...+ ++++|+...+.+.....
T Consensus 335 ~----------------p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 335 F----------------PEFAAAHSNLASVLQQQG---------KLQEALMHYKEAIRISP 370 (388)
T ss_dssp C----------------TTCHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHTTCT
T ss_pred C----------------CCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhCC
Confidence 3 334445666666777777 89999999988876644
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=239.89 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=159.8
Q ss_pred CcCCCCcCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---------HHHHHHHHH
Q 015416 2 FVKGFVADPV-VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---------EEEAMECYN 71 (407)
Q Consensus 2 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~ 71 (407)
.+++..+++. .++.+|.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.+. ++.|.++|+
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 3455555443 4778888888888888888888888888 888888888888888876654 678888888
Q ss_pred HHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 72 EAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+|...+ +.||..+|+.++.+|++.|++++|.++|++|.+.|..| +..+|+.+|.+|++.|++++|.++|++|.
T Consensus 95 ~M~~~G--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 95 QMIVDK--VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHTT--CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887 78888888888888888888888888888888888777 77888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888887765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=239.01 Aligned_cols=207 Identities=17% Similarity=0.212 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHhhCCccCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC------
Q 015416 27 DGVFRLFEELKEKLGGVVSDG-VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK------ 99 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 99 (407)
..+..+.+.+.++ +..+.+ ..++.+|.+|++.|++++|+++|++|...| +.||..+|+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k--~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 7 SPSENLSRKAKKK--AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred chHHHHHHHHHHh--cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 3455666677766 555444 358889999999999999999999999998 99999999999999987665
Q ss_pred ---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 015416 100 ---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176 (407)
Q Consensus 100 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 176 (407)
++.|.++|++|...|..| |..+|++|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~P-----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVP-----NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 688999999999999888 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=220.08 Aligned_cols=306 Identities=15% Similarity=0.114 Sum_probs=276.1
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+..+|..+...|.+.|++++|+..|+++.+. .|.+..+|..++.++...|++++|+..|+++++.+ |.+...
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 137 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCV 137 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 457788999999999999999999999999986 34466789999999999999999999999999876 446678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
+..+..++...|++++|.+.|+++.+..+. +..+|..++.+|...|++++|+..|+++...+ +.+...|..+.
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 888999999999999999999999987654 66789999999999999999999999999875 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..+...|++++|+..|+++.... +.+..++..++.+|...|++++|...|+++.+.. +.+..+|..++..+.+.|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998753 3357889999999999999999999999999854 446779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|...|+++....|.+..++..++.++...|++++|+..|+++++.. |.+...+..++.+|.+.|++++|...++++.
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999863 6678899999999999999999999999998
Q ss_pred Hhh
Q 015416 327 REK 329 (407)
Q Consensus 327 ~~~ 329 (407)
+..
T Consensus 367 ~~~ 369 (388)
T 1w3b_A 367 RIS 369 (388)
T ss_dssp TTC
T ss_pred hhC
Confidence 654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=206.51 Aligned_cols=306 Identities=14% Similarity=0.094 Sum_probs=266.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...+..+...+.+.|++++|+.+|+.+.+. .+.+..+|..++.++...|++++|+..|+++++.+ +.+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 96 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAA 96 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHH
Confidence 345677899999999999999999999999985 45678999999999999999999999999999987 456889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc---chHHHH------------HHHHHhcCCHHHHHHHHHHHh
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL---GSFNVM------------ADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+..++.+|...|++++|...|+++.+..+. +. .++..+ +..+...|++++|+.+|+++.
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPS------ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999987644 33 455544 555999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV 231 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 231 (407)
... +.+...+..++.+|...|++++|+.+|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+...
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHH
Confidence 865 5678899999999999999999999999998753 4468899999999999999999999999999753 334555
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 232 YNRL------------VGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 232 ~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (407)
+..+ +..|...|++++|..+|+++....|.+ ...+..++.++.+.|++++|+..++++....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-- 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 5555 889999999999999999999855555 3478899999999999999999999999863
Q ss_pred CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.+...+..++.+|...|++++|...++++.+..
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999998654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-25 Score=202.00 Aligned_cols=324 Identities=13% Similarity=0.050 Sum_probs=259.6
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKL 106 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (407)
..+...+..+... .|.++..+..++..+.+.|++++|+.+|++++... +.+..+|..++.+|...|++++|...
T Consensus 9 ~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 9 SGVDLGTENLYFQ---SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccccc---cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555553 45678899999999999999999999999999876 55788999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHH------------HHHHHH
Q 015416 107 FDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT---LSFNNL------------IDQLCK 171 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~ 171 (407)
|+++.+.++. +..++..++.+|.+.|++++|...|+++.... +.+. ..+..+ +..+..
T Consensus 83 ~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 83 LTKVIQLKMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998654 66789999999999999999999999999865 3334 555555 445889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 172 NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.|++++|+..|+++.+.. +.+...+..++.+|...|++++|..+|+++.+.. +.+..++..++..|...|++++|...
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998753 4468889999999999999999999999999753 45788999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHH
Q 015416 252 FDIMVKKLKMDDASYKFM------------MKALSDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEE 317 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 317 (407)
|+++....|.+...+..+ +..|...|++++|+.+|++++......+. ...+..++.++.+.|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999998777777777666 88999999999999999999986321111 4478889999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccc
Q 015416 318 VVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 318 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
|...++++.... |.....+..++..+...+ ++++|+...+.+......
T Consensus 314 A~~~~~~a~~~~----------------p~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 314 AIRVCSEVLQME----------------PDNVNALKDRAEAYLIEE---------MYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhC----------------cccHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHhCcc
Confidence 999999987543 233344555566655666 778888887777665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-23 Score=184.83 Aligned_cols=308 Identities=13% Similarity=0.076 Sum_probs=263.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|+..+..+...+...|++++|+..|+.+.+. .|.++.++..++.++...|++++|+..|++++... +.+...+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK---MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcchHHH
Confidence 4667888999999999999999999999996 45578899999999999999999999999999876 44678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM------------ADGYCGQGRFKDAIEVFRKMGEYRCS 156 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~ 156 (407)
.++.++...|++++|...|+++.+..+.... +...+..+ +..+...|++++|+.+|+++.... +
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccC---hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999999999987651000 44455544 688999999999999999998865 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN--- 233 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 233 (407)
.+...+..++..+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence 678899999999999999999999999999863 4568899999999999999999999999999753 33444333
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH
Q 015416 234 ---------RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA----SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 234 ---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
.++..+...|++++|...++++....+.+.. .+..++.++...|++++|+..|+++.+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHH
Confidence 3367799999999999999999996666553 35668889999999999999999999873 66788
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 301 LQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 301 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.+..++.+|.+.|++++|...++++.+..+
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=202.36 Aligned_cols=361 Identities=14% Similarity=0.027 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+.+.|++++|+..|+++.+. . |++.+|..++.++...|++++|+..|+++++.+ |.+..+|..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--K--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--C--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHH
Confidence 456778889999999999999999999996 3 688999999999999999999999999999887 557789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-------------------------------------------------
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRL------------------------------------------------- 120 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------- 120 (407)
++.+|...|++++|...|+++....+.....
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999998776421100
Q ss_pred ------------------------ccccchHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCC--------CCCHH
Q 015416 121 ------------------------AVNLGSFNVMADGYCG---QGRFKDAIEVFRKMGE-----YRC--------SPDTL 160 (407)
Q Consensus 121 ------------------------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~ 160 (407)
..+...+..+...+.. .|++++|+.+|+++.. ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 0012233444444444 8999999999999887 311 12345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
.+..++..+...|++++|..+|+++.+.. |+...+..++.+|...|++++|...++++.+.. +.+..++..++..|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 78888899999999999999999998753 347888889999999999999999999998753 446678889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
..|++++|...|+++....+.+..++..++.++...|++++|+.+|+++.... +.+...+..++.++.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999998777788899999999999999999999999998863 5566788888999999999999999
Q ss_pred HHHHHHHh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccC
Q 015416 321 LMEKKERE---------------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNAN 373 (407)
Q Consensus 321 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 373 (407)
.++++... +....+...........|.....+..++.++...+ +
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---------~ 464 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE---------D 464 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc---------C
Confidence 99887643 22233333444444445555566667777777777 8
Q ss_pred hhhHhhHHHHhcCcccch
Q 015416 374 ANEAASVAEAQAGKEVNL 391 (407)
Q Consensus 374 ~~ea~~~~~~~~~~~~~~ 391 (407)
+.+|+...+.+.......
T Consensus 465 ~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 465 IDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 888888887777665543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=198.50 Aligned_cols=368 Identities=14% Similarity=0.065 Sum_probs=290.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+.+.|++++|+..|+++.+. .|.++.+|..++.+|...|++++|+..|++++..+ +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 456788899999999999999999999996 45588999999999999999999999999999987 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--------------------------------cc--------------
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLA--------------------------------VN-------------- 123 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------~~-------------- 123 (407)
++.++...|++++|...|+ .....+.+.... ++
T Consensus 99 la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999996 443322211100 00
Q ss_pred -------------cc---hHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHc
Q 015416 124 -------------LG---SFNVMADGYCG--------QGRFKDAIEVFRKMGEYRCSPDT-------LSFNNLIDQLCKN 172 (407)
Q Consensus 124 -------------~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 172 (407)
.. ....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 00 11222222222 247899999999998865 3332 3577777888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
|++++|...|+++.+. .|+...+..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999984 5668889999999999999999999999999754 456789999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh----
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE---- 328 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 328 (407)
+++....+.+..++..++.++...|++++|+.+|+++.... +.+...+..++.++.+.|++++|...++++...
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999777788999999999999999999999999999874 666778889999999999999999999997643
Q ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHh
Q 015416 329 ------------------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAA 378 (407)
Q Consensus 329 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~ 378 (407)
+....+...........|.....+..++..+...+ ++++|+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---------~~~~A~ 482 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME---------KIDEAI 482 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---------CHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------cHHHHH
Confidence 33344455555556666777778888888888888 899999
Q ss_pred hHHHHhcCcccchhhhhhhhh
Q 015416 379 SVAEAQAGKEVNLEEATAVES 399 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~ 399 (407)
...+.+........+.....+
T Consensus 483 ~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHh
Confidence 999888887666555544443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-23 Score=183.00 Aligned_cols=296 Identities=10% Similarity=0.025 Sum_probs=253.9
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
+++.+...+..+...+...|++++|+.+|+++.+. .+.+...+..++.++...|++++|+.++++++... +.+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 90 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---PSNP 90 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTST
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCH
Confidence 45567777888999999999999999999999986 45577888889999999999999999999999876 4567
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 85 VANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 85 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+|..+..++...| ++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...+.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 163 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPML 163 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHH
Confidence 88999999999999 999999999999987654 56689999999999999999999999998865 45567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG--------LRPNLAVYNRL 235 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l 235 (407)
.++..|...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 89999999999999999999999863 4467889999999999999999999999988631 13345789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-hhcCc
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL-SKEGR 314 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 314 (407)
+..|...|++++|...++++....+.+..++..++.++...|++++|...|+++++.. +.+...+..++.++ ...|+
T Consensus 243 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999777889999999999999999999999999998863 56777888888888 45565
Q ss_pred HH
Q 015416 315 EE 316 (407)
Q Consensus 315 ~~ 316 (407)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 54
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=178.97 Aligned_cols=307 Identities=12% Similarity=0.043 Sum_probs=258.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+..++..+...|++++|+..|++++..+ +.+..++..++.++...|++++|...|+++.+..+. +..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------FTA 72 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cch
Confidence 45678889999999999999999999999886 557889999999999999999999999999988654 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCS---PDTLSFNNL------------IDQLCKNGMLAEAEELYGEMSDKGV 190 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (407)
++..++.+|...|++++|...|+++.+.. + .+...+..+ +..+...|++++|+.+++++.+..
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 89999999999999999999999999864 2 244455544 578899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH--
Q 015416 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF-- 268 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 268 (407)
+.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++....+.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 4468889999999999999999999999999863 5578899999999999999999999999999977777665543
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHH
Q 015416 269 ----------MMKALSDGGKLDEILEIVGGILDDGGIEFSE----ELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 269 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 334 (407)
++..+...|++++|+..++++.... +.+. ..+..++.++.+.|++++|...+++.....
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 302 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----- 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 3677999999999999999999874 3333 235567889999999999999999987653
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccch
Q 015416 335 REAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNL 391 (407)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~ 391 (407)
|.....+..++..+...+ ++++|+...+.+.....+.
T Consensus 303 -----------~~~~~~~~~~~~~~~~~g---------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 303 -----------PDNVNALKDRAEAYLIEE---------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp -----------TTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTCTTC
T ss_pred -----------cccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCCC
Confidence 334456666777777777 8999999998888776543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-22 Score=186.57 Aligned_cols=316 Identities=15% Similarity=0.031 Sum_probs=256.1
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV------ 80 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 80 (407)
.|+..+|..+..+|.+.|++++|+..|+.+.+. .|.+..+|..++.++...|++++|+..|+++...++..
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 112 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHH
Confidence 478999999999999999999999999999996 35577899999999999999999999999998776311
Q ss_pred ----------------------------------------------------------------------CCchhhHHHH
Q 015416 81 ----------------------------------------------------------------------KMSAVANNSV 90 (407)
Q Consensus 81 ----------------------------------------------------------------------~~~~~~~~~l 90 (407)
+.+...+...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 0113333344
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHh-----cCCCCCcc---ccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 91 LDALCN---NGKFDEALKLFDRMKN-----EHNPPKRL---AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 91 ~~~~~~---~~~~~~A~~~~~~~~~-----~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
...+.. .|++++|...|+++.+ ....|... ..+..++..++.++...|++++|...|+++.... |+.
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~ 270 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRV 270 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccH
Confidence 444444 8999999999999988 42222211 1145678889999999999999999999998865 447
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..++..|
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence 788889999999999999999999998753 3457788889999999999999999999998754 34567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHhh---c
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS----EELQEFVKGELSK---E 312 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~ 312 (407)
...|++++|..+++++....+.+..++..++.++...|++++|+..|+++.....-.+. ...+..++.++.+ .
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999998877778888999999999999999999999988875321222 3378888888988 9
Q ss_pred CcHHHHHHHHHHHHHhh
Q 015416 313 GREEEVVKLMEKKEREK 329 (407)
Q Consensus 313 g~~~~A~~~~~~~~~~~ 329 (407)
|++++|...++++....
T Consensus 429 ~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD 445 (514)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-22 Score=174.88 Aligned_cols=274 Identities=12% Similarity=-0.007 Sum_probs=241.1
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
+.+.+...+..++..+...|++++|+.+|++++..+ +.+...+..++.++...|++++|...++++.+..+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----- 88 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS----- 88 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----
Confidence 456688899999999999999999999999999887 456677888889999999999999999999987654
Q ss_pred cccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 122 VNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
+..++..+...+...| ++++|...|+++.... +.+...|..++..+...|++++|+..|+++.+.. +.+...+..+
T Consensus 89 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 89 -NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp -STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred -CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 6678999999999999 9999999999999875 5567889999999999999999999999998753 3346677789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL---------KMDDASYKFMMK 271 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~ 271 (407)
...|...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.... +....++..++.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999864 4567899999999999999999999999998832 455689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 272 ALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++...|++++|+..|+++.+.. +.+...+..++.++.+.|++++|...++++.+..
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999874 5677889999999999999999999999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=184.18 Aligned_cols=294 Identities=14% Similarity=0.025 Sum_probs=237.5
Q ss_pred HHhcCChhhHHH-HHHHHHHhhCCccC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 20 FVRDGDSDGVFR-LFEELKEKLGGVVS-DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 20 ~~~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
+...|++++|++ .|++.....+..+. +...+..++..+...|++++|+.+|+++++.+ +.+..++..++.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHC
Confidence 445678888888 88766554222211 46779999999999999999999999999987 55788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------------
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN------------- 164 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------- 164 (407)
|++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...+..
T Consensus 112 g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 112 EQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------
T ss_pred cCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHH
Confidence 9999999999999988654 66789999999999999999999999998865 233333321
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 165 --LIDQLCKNGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 165 --l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
.+..+...|++++|...|+++.+.... ++..++..++..|...|++++|...|+++.+.. +.+..++..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 233344899999999999999875322 147889999999999999999999999999753 4467899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------HHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS-----------EELQEFVKGELS 310 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~ 310 (407)
.|++++|...|+++....|.+..++..++.+|...|++++|+..|++++... +.+ ...+..++.+|.
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999999778889999999999999999999999999998753 222 678999999999
Q ss_pred hcCcHHHHHHHHHHHH
Q 015416 311 KEGREEEVVKLMEKKE 326 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~ 326 (407)
..|++++|..++++..
T Consensus 342 ~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 342 MLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCGGGHHHHHTTCH
T ss_pred HhCChHhHHHhHHHHH
Confidence 9999999999887543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-22 Score=177.83 Aligned_cols=267 Identities=14% Similarity=0.009 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...|..++..+.+.|++++|+.+|++++... +.+..+|..++.+|...|++++|+..|+++.+..+. +..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN------NLK 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHH
Confidence 45669999999999999999999999999887 557889999999999999999999999999987654 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----------TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PD 193 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 193 (407)
++..++.+|...|++++|+..|+++.+.. |+ ...+..++..+...|++++|+.+|+++.+.... ++
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 89999999999999999999999998753 32 223345688899999999999999999875322 15
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..++..++..|...|++++|...|+++.+.. +.+..+|..++.+|...|++++|...|+++....|.+..++..++.+|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 8899999999999999999999999999853 456889999999999999999999999999998788899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC----------CCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 274 SDGGKLDEILEIVGGILDDGGI----------EFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
...|++++|+..|++++....- ..+...+..+..++...|+.+.+....++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999875311 01357888999999999999988877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=173.13 Aligned_cols=272 Identities=13% Similarity=0.032 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...+..+...+.+.|++++|+..|+++.+. .|.+..+|..++.++...|++++|+..|++++..+ +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHH
Confidence 456788999999999999999999999985 45678899999999999999999999999999887 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc----------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN----------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-- 157 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 157 (407)
++.+|...|++++|...|+++....+........ ...+..+...+ ..|++++|+.+|+++.... +.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~ 215 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSI 215 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcc
Confidence 9999999999999999999999876553211000 00001233344 8999999999999998865 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+..++..++..|...|++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..++.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 57899999999999999999999999998753 3457899999999999999999999999999853 456789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMD-----------DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+|...|++++|...|+++....|.+ ..+|..++.+|...|++++|..++.+.+.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999998843333 78999999999999999999999875543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-20 Score=174.91 Aligned_cols=309 Identities=14% Similarity=0.078 Sum_probs=231.6
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV------ 80 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 80 (407)
+.++.+|..+...|.+.|++++|++.|+++.+. .|.+..++..++.++...|++++|+..|+ .....|+.
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~ 131 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIE 131 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHH
Confidence 346788999999999999999999999999986 34578889999999999999999988774 32211110
Q ss_pred --------------------------------------------------------------------------------
Q 015416 81 -------------------------------------------------------------------------------- 80 (407)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (407)
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred --------------------CC-c-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 81 --------------------KM-S-------AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 81 --------------------~~-~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
.| + ..++..+...+...|++++|...|+++.+..+ +..++..+..
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~l~~ 284 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-------TPNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-------CchHHHHHHH
Confidence 01 1 12345555667777888888888888877643 2346777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
+|...|++++|+..|+++.... +.+..+|..++..+...|++++|...|+++.+.. +.+...+..+..+|...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887764 4567788888888888888888888888887643 2346677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhc----------
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM------DDASYKFMMKALSDG---------- 276 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~---------- 276 (407)
|..+++++.+.. +.+..++..++..+...|++++|...|+++....+. ....+.....++...
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 888888888753 445667888888888888888888888888762111 222345556667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
|++++|+..|+++.... +.+...+..++.+|.+.|++++|...++++....+.
T Consensus 442 ~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 88888888888888863 566778888999999999999999999998875543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=174.38 Aligned_cols=273 Identities=13% Similarity=0.021 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+.+.|++++|+.+|+++.+. .|.+..+|..++.++...|++++|+..|++++..+ +.+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHH
Confidence 4455888999999999999999999999996 45578899999999999999999999999999886 45688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc----cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA----VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP--DTLSF 162 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 162 (407)
.++.+|...|++++|...|+++.+..+...... .....+..+..+|...|++++|+.+|+++.... +. +..++
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 216 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHH
Confidence 999999999999999999999998754311000 012233456889999999999999999999875 33 68899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
..++..|...|++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..++.+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 999999999999999999999998853 4468899999999999999999999999999853 44588999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKM------------DDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
|++++|...|+++....|. +..+|..+..++...|+.+.+..+..+..
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999999999882211 36789999999999999999988877643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-21 Score=168.81 Aligned_cols=279 Identities=13% Similarity=-0.017 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|+.+|+++.+. .+.+..+|..++.++...|++++|+..|+++.... +.+..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCCHHHHH
Confidence 3445667778888888888888888888885 34477788888888888888888888888888876 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID- 167 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 167 (407)
.++.++...|++++|.+.|+++.+..+. +...+..+...+ |+......+..
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ------YEQLGSVNLQAD----------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT------TTTC------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHhHHH----------------------HHHHHHHHHHHh
Confidence 8888888888888888888888876544 222333320000 00001111111
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 168 -QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 168 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+...|++++|..+++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+..++..++..+...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 1333444444444444444321 1234444444444445555555555555444432 223445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------cHHHHHHHHHHHhhcCc
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF------------SEELQEFVKGELSKEGR 314 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 314 (407)
+|...|+++....+.+..++..++.+|...|++++|.+.|+++.... +. ....+..++.++.+.|+
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 55555555555444445555555555555555555555555554431 11 24455555555555555
Q ss_pred HHHHHHHHHHH
Q 015416 315 EEEVVKLMEKK 325 (407)
Q Consensus 315 ~~~A~~~~~~~ 325 (407)
+++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=168.56 Aligned_cols=251 Identities=11% Similarity=-0.036 Sum_probs=178.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...|+++.+..+. +..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHH
Confidence 44556666667777777777777777776655 335566666666777777777777777776665433 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-H
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL-MD-A 203 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~-~ 203 (407)
++..++.+|...|++++|...++++.... +.+...+..+... .|+......+ .. .
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHH
Confidence 56666666666666666666666666543 1122122111100 0111111222 22 3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
+...|++++|..+++++.+.. +.+..++..++..|...|++++|...++++....+.+..++..++.++...|++++|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 778899999999999999764 4478899999999999999999999999999987888999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
..|+++.... +.+...+..++.+|.+.|++++|...++++....+.
T Consensus 227 ~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 227 DAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999873 567788999999999999999999999998765544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-20 Score=158.61 Aligned_cols=276 Identities=14% Similarity=0.076 Sum_probs=211.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSD--GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
++.....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~---~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S---SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c---CChhHHHHHHHHHHH
Confidence 35566789999999988776542 222 34556778899999999999986644 2 256778888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
...++.++|++.++++...+..|+ +...+..+..+|...|++++|++.+++ +.+...+..++..+.+.|+
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~----~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVT----NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCS----CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHHHHHhcccCCC----CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999887764444 556778888999999999999999887 4678888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 175 LAEAEELYGEMSDKGVNPDEYTY---GLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 175 ~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
+++|...|+++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++...|++++|...
T Consensus 146 ~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999875 3553211 12233444558899999999999876 366788899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 252 FDIMVKKLKMDDASYKFMMKALSDGGKLDE-ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
|+++....|.++.++..++..+...|+.++ +.++++++++.. |.++.+ .+...+.+.++++..-
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH----HHHHHHHHHHHHHHHH
Confidence 999998888889999999999999999876 568888888863 333322 2334555566665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-19 Score=164.10 Aligned_cols=362 Identities=10% Similarity=-0.005 Sum_probs=256.3
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhC---C---ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG---G---VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS--- 78 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 78 (407)
.....||.|...+...|++++|++.|++..+..+ + .+....+|+.++.+|...|++++|+..|+++....+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999998765311 1 122356789999999999999999999998875321
Q ss_pred --CCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH---HHhcCCHHHHHHHHHHHh
Q 015416 79 --SVKMSAVANNSVLDALCNN--GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG---YCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 79 --~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~ 151 (407)
.......++..+..++... +++++|+..|+++++..|. ++..+..+..+ +...++.++|++.|++.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~------~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK------NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1122345666666666554 5799999999999988654 45556555555 445678889999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015416 152 EYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 227 (407)
+.. +.+...+..+...+.. .|++++|..++++..... +.+...+..+...|...|++++|...++++.+.. +.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 865 4566777777666554 467889999999998753 4467889999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQV-------------------GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+..++..++.+|... +.++.|...+++.....+.+..++..++..|...|++++|+..|++
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 566788887776432 3467788888888887778888999999999999999999999999
Q ss_pred HHhcCCCCCcHH--HHHHHHH-HHhhcCcHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015416 289 ILDDGGIEFSEE--LQEFVKG-ELSKEGREEEVVKLMEKKEREK--------AEAKAREAEAAEAAKRSARAAIASLIPS 357 (407)
Q Consensus 289 ~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 357 (407)
++... ..+... .+..++. .+...|++++|+..+++..+.. .......+.+.....+|.....+..||.
T Consensus 360 aL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 360 EFSKE-LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHSC-CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHhcC-CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99863 122211 2333333 3457899999999999887532 2223333444455667777778888999
Q ss_pred CcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 358 KFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
++...| ++++|+...+++.+..
T Consensus 439 ~~~~~g---------~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 439 LQELNE---------KMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHH---------HCC-------------
T ss_pred HHHHcC---------CHHHHHHHHHHHHhcC
Confidence 988888 8888988888776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-18 Score=148.11 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=209.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
++-....|+++.|+..+++.....| .........+.++|...|+++.|+..++. . .| ++..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p--~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~----~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSP--ERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SA----PELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc--hhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CC----hhHHHHHHHHHH
Confidence 3455678999999999988765431 11134556778999999999999986644 1 11 166788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
+...|+.++|++.++++...+. |.+...+..++.++...|++++|+..+++ +.+...+..++..|.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987764 44667788888999999999999999987 4578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVY---NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|...|+++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999853 543211 223344455689999999999999988899999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHhhH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEE-VVKLMEKKEREKA 330 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 330 (407)
+... |.+..++..++.++...|+.++ +.++++++.+..+
T Consensus 227 l~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 227 LDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9974 6678889999999999999976 5788888876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-17 Score=150.04 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=227.6
Q ss_pred CHHHHHHHHHHHHh----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 015416 9 DPVVYSYLMLGFVR----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 80 (407)
++..+..|...|.. .+++++|+..|++..+. + ++..+..|...|.. .+++++|+.+|+++...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 56667777777877 78999999999988875 4 67788888888888 889999999999988765
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 015416 81 KMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 152 (407)
+...+..|...|.. .+++++|+..|++..+.+ +..++..|..+|.. .+++++|+++|++..+
T Consensus 110 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 110 --LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 56677778888887 788999999999888765 45577888888887 7889999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 015416 153 YRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 64 67788888888887 788999999998888754 56677777777776 788888888888888754
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC
Q 015416 225 LRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG-----GKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 295 (407)
+...+..+...|.. .+++++|..+|++..+. .++..+..+...|... +++++|+.+|+++.+.
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 55677778888877 78888888888888763 3566777788888776 8888888888888775
Q ss_pred CCcHHHHHHHHHHHhhcC---cHHHHHHHHHHHHHhh
Q 015416 296 EFSEELQEFVKGELSKEG---REEEVVKLMEKKEREK 329 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 329 (407)
.+...+..++..|.+.| +.++|.+++++..+.+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 23456666777777656 7788888888876543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-17 Score=150.13 Aligned_cols=288 Identities=15% Similarity=0.090 Sum_probs=249.0
Q ss_pred CHHHHHHHHHHHHh----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 015416 9 DPVVYSYLMLGFVR----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 80 (407)
++..+..|...|.. .+++++|..+|++..+. + ++..+..|...|.. .+++++|+.+|+++...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 145 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--- 145 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 56677888888988 89999999999999885 4 67888899999998 899999999999999876
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 015416 81 KMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 152 (407)
+...+..+..+|.. .+++++|++.|++..+.+ +..++..|...|.. .+++++|..+|++..+
T Consensus 146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 56778888888887 789999999999998875 56688899999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 015416 153 YRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|++..+.+
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65 67788888888887 889999999999998764 56677788888888 899999999999998754
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC
Q 015416 225 LRPNLAVYNRLVGKLVQV-----GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG---KLDEILEIVGGILDDGGIE 296 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~ 296 (407)
+...+..|...|... +++++|..+|++..+. .+...+..+...|...| ++++|+++|+++.+.
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---- 360 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---- 360 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----
Confidence 567888899999887 8999999999999873 35678888999888866 889999999999885
Q ss_pred CcHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhh
Q 015416 297 FSEELQEFVKGELSK----EGREEEVVKLMEKKEREK 329 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 329 (407)
.+...+..++..|.. .+++++|..++++..+.+
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 356778888999988 899999999999987765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=142.35 Aligned_cols=243 Identities=11% Similarity=0.076 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+......+...|++++|+..|+++.+. .|.+..++..++.++...|++++|+..|++++...++......+|..++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 334445555555555555555555553 22344455555555555555555555555555522111111223455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
++...|++++|+..|+++.+..+. +..++..++.+|...|++++|+..|++..+.. +.+...|..+...+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 555555555555555555554332 33455555555555555555555555555442 33344444444222233
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR---VDDGATYFRKMVDSG-LRPN------LAVYNRLVGKLVQV 242 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 242 (407)
+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 35555555555554421 1123444444444444444 444444444444310 0011 12344444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASY 266 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~ 266 (407)
|++++|...|+++.+..|.+...+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCccHHHHH
Confidence 444444444444444333333333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=142.37 Aligned_cols=210 Identities=15% Similarity=0.074 Sum_probs=115.1
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 44 VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
|+++..+..++..+.+.|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++++..|. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------Y 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Confidence 5677788888888888888888888888888876 456778888888888888888888888888887654 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
..++..+..+|...+. .. .. .+...|++++|+..|++.++.. +-+...+..+..+
T Consensus 73 ~~a~~~lg~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 5677777777776610 00 00 0112244444444444444321 1123344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
|...|++++|+..|+++++.. .+...+..++.+|...|++++|...|+++....|.+...+..+..++...|++++|+
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 444444444544444444433 344444455555555555555555555555444444555555555555555555555
Q ss_pred HHHHHH
Q 015416 284 EIVGGI 289 (407)
Q Consensus 284 ~~~~~~ 289 (407)
..|++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-18 Score=142.79 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc----hh
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS----AV 85 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~ 85 (407)
...|..+...+...|++++|+..|+++.+. . .+..+|..++.++...|++++|+..|++++...|...++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 345666777777777777777777777775 3 566777777777777777777777777776644221111 35
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
++..++.++...|++++|...|+++.+..+. ...+...|++++|...++++.... +.+...+..+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 145 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 5666666666666666666666666654321 123444455555555555555432 2233344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
+..+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..++.++...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhH
Confidence 555555555555555555554421 2234444444444444444444444444444321 22233444444444444444
Q ss_pred HHHHHHHHHHHh
Q 015416 246 DEAKSFFDIMVK 257 (407)
Q Consensus 246 ~~A~~~~~~~~~ 257 (407)
++|...|+++.+
T Consensus 224 ~~A~~~~~~a~~ 235 (258)
T 3uq3_A 224 ASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-18 Score=140.87 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=142.9
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
+...+..+...+.+.|++++|+..|++.++.. |.+...+..+..++.+.|++++|+..|+++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44456666666666666666666666666654 4455666666666666666666666666666532 223556666666
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 203 ACFEV-----------NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 203 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
++... |++++|+..|++.++.. +.+...+..++.+|...|++++|+..|+++.+.. .++..+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 66666 99999999999999853 3467799999999999999999999999999966 88999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 272 ALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|...|++++|+..|+++++.. |.+...+..++.++.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999974 6677889999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-17 Score=141.32 Aligned_cols=254 Identities=13% Similarity=0.045 Sum_probs=198.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
|+..+...+..+...|++++|+..|+++++.+ +.+..++..++.+|...|++++|+..|+++.+....+. ....
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~ 75 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSA 75 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHH
Confidence 45567788899999999999999999999887 44666888999999999999999999999988432221 1233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..++.+|...|++++|+..|++..+.. +.+...|..++..|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 58889999999999999999999998865 4567889999999999999999999999998752 335677777773444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKK--LKMD------DASYKFMMKALS 274 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~------~~~~~~l~~~~~ 274 (407)
..+++++|...|+++.+.. +.+...+..++..+...|+ +++|...++++... ..|+ ..++..++..|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5569999999999999753 3457788888888888888 88899999888872 2222 257888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|++++|+..|+++++.+ |.+......+.....
T Consensus 233 ~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD--PTNKKAIDGLKMKLE 266 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhcC--ccHHHHHHHhhhhhc
Confidence 9999999999999999874 555656665554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-18 Score=142.27 Aligned_cols=231 Identities=15% Similarity=0.096 Sum_probs=151.3
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPK-RLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 125 (407)
...|..++..+...|++++|+.+|+++++.. .+..++..++.++...|++++|...|+++.+..+... .......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4567777778888888888888888877654 3566777777788888888888888887776543210 0000145
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|...|++++|+..|++..... |+. ..+...|++++|...++++.... +.+...+..++..+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 66777777777777777777777777643 442 23445566777777777766632 223455666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|++++|...|+++.+.. +.+..++..++..|...|++++|...|+++....|.+..++..++.++...|++++|...
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777777766543 334566666666677777777777777766665555666666666667677777777766
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
|+++.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=149.63 Aligned_cols=249 Identities=11% Similarity=0.046 Sum_probs=189.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK-FDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
..+|..+..++...|++++|+..|++++..+ +.+..+|..+..++...|+ +++|+..|+++++..+. +..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~ 167 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHH
Confidence 3567778888888888888888888888876 4467788888888888886 88888888888887655 666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..+..++...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 88888888888888888888888888765 5577788888888888888888888888888753 235777888888888
Q ss_pred h-cCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 206 E-VNRVDDG-----ATYFRKMVDSGLRPNLAVYNRLVGKLVQVG--MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 206 ~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
. .|..++| +..|+++++.. +-+...|+.+...+...| ++++|+..+..+ +..+.+...+..++.+|.+.|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 8 5554666 47788887743 335668888888888877 578888888887 656667788888888888764
Q ss_pred ---------CHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHh
Q 015416 278 ---------KLDEILEIVGGI-LDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 278 ---------~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.+++|+++|+++ .+.+ +.....|..++..+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 258888888888 6642 444456666655544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-17 Score=145.73 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
...|..+...+...|++++|+..|+++++. .|-+..+|+.++.++...|+ +++|+..|++++..+ +.+..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCHHHHH
Confidence 456888999999999999999999999996 34578899999999999997 999999999999987 55789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+..++...|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++++.. +.+...|+.+..+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999998765 77899999999999999999999999999976 5678899999999
Q ss_pred HHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 169 LCK-NGMLAEA-----EELYGEMSDKGVNPDEYTYGLLMDACFEVN--RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 169 ~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
+.. .|..++| +..|++++... +-+...|..+..++...| ++++|++.+..+ +. .+.+...+..++.+|.
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 999 6665777 58899988743 335778888898898888 689999999888 43 3456778999999998
Q ss_pred hcC---------CHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHh
Q 015416 241 QVG---------MLDEAKSFFDIM-VKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 241 ~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 275 (407)
..| .+++|..+|+++ .+..|.....|..+...+..
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 874 358999999999 67666666777777666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=155.11 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=197.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
+....+...+..+...|++++|+.+|++++...|..++ -..++..+..+|...|++++|...|+++.............
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445566777777777788887777777776532110 03456677777777788888887777765432111100113
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGM--------------------LAEA 178 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 178 (407)
..++..+..+|...|++++|...+++...... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677777888888888888888777654310 011 3367778888888888 8888
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 015416 179 EELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 179 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 248 (407)
...+++..+. +..| ...++..+...|...|++++|...++++.+... .++ ..++..++..|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888876542 1111 144677888888999999999999988874210 112 23788889999999999999
Q ss_pred HHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHhhcCcHHHH
Q 015416 249 KSFFDIMVKKLK--MD----DASYKFMMKALSDGGKLDEILEIVGGILDDGG----IEFSEELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 249 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 318 (407)
...+++.....+ ++ ..++..++..|...|++++|...++++..... .......+..++.+|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998887211 11 56788889999999999999999998876421 111245777889999999999999
Q ss_pred HHHHHHHHHhh
Q 015416 319 VKLMEKKEREK 329 (407)
Q Consensus 319 ~~~~~~~~~~~ 329 (407)
...+++.....
T Consensus 327 ~~~~~~al~~~ 337 (406)
T 3sf4_A 327 MHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-16 Score=146.20 Aligned_cols=303 Identities=10% Similarity=0.037 Sum_probs=167.7
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
-|...|..++. +.+.|++++|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++... |+...|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHHH
Confidence 36678888888 47899999999999999985 56688899999999999999999999999999864 355566
Q ss_pred HHHHHH-HHhcCCHHHHHH----HHHHHHhc-CCCCCccccccchHHHHHHHHHh---------cCCHHHHHHHHHHHhh
Q 015416 88 NSVLDA-LCNNGKFDEALK----LFDRMKNE-HNPPKRLAVNLGSFNVMADGYCG---------QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 88 ~~l~~~-~~~~~~~~~A~~----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 152 (407)
..++.. ....|+++.|.+ +|++.+.. |..|. +...|...+....+ .|+++.|..+|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM----SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc----cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 665542 233455544443 45444332 22221 23344444444332 4555555555555544
Q ss_pred CCCCCC--HHHHH-----------------------------------------------------------------HH
Q 015416 153 YRCSPD--TLSFN-----------------------------------------------------------------NL 165 (407)
Q Consensus 153 ~~~~~~--~~~~~-----------------------------------------------------------------~l 165 (407)
. |.+ ...|. ..
T Consensus 159 ~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 159 N--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred c--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 2 111 01111 11
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHC
Q 015416 166 IDQLCKN----GML----AEAEELYGEMSDKGVNPDEYTYGLLMDACFE-------VNRVD-------DGATYFRKMVDS 223 (407)
Q Consensus 166 ~~~~~~~----g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~ 223 (407)
+...... ++. ..+..+|++++.. .+.+...|..++..+.. .|+++ +|..+|++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 1000000 011 1333444444432 12245555555555553 46654 666666666642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD-ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
-.+.+...|..++..+.+.|++++|..+|+++++..+.++ ..|..++..+.+.|++++|.++|+++++.. +.....+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHH
Confidence 1233455666666666666666666666666666333332 356666666666666666666666666542 2222222
Q ss_pred HHHHHH-HhhcCcHHHHHHHHHHHHH
Q 015416 303 EFVKGE-LSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 303 ~~l~~~-~~~~g~~~~A~~~~~~~~~ 327 (407)
...+.. +...|+.++|..+|++..+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 222211 2245666666666665554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=143.31 Aligned_cols=222 Identities=13% Similarity=0.019 Sum_probs=109.5
Q ss_pred cCChhhHHHHHHHHHHhhCC-ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 23 DGDSDGVFRLFEELKEKLGG-VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
.|++++|+..|+++.+..+. .+.+..+|..++.++...|++++|+..|++++..+ +.+..+|..++.+|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHH
Confidence 45566666666666553110 11234555566666666666666666666666554 334555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
+|...|+++.+..+. +..++..++.+|...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 95 ~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 666666666655432 34455556666666666666666666655543 3333333333333444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+++..... +++...+ .++..+...++.++|...+..+.+..... +..++..++..|...|++++|...|+++..
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55544321 2222222 24444444455555555555444321000 023344444444444444444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=150.53 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=131.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.+.+. .++..+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i~ 97 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVE 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CccchhH
Confidence 45568889999999999999999998542 36778888899998899999999977777653 3346778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
+.++.+|.+.|+++++.++++. | +..+|..++..|...|.+++|..+|..+ ..|..++.
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~~-------p-----n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFING-------P-----NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp -----------CHHHHTTTTTC-------C---------------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHcC-------C-----cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 8888899999999888877741 2 4458889999999999999999999876 36888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 247 (407)
++.+.|++++|++.++++ .++.+|..++.+|...|+++.|..+...+ ..++.-...++..|.+.|++++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999888 26788999999999999999986555442 2344445568888999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHhhcCcHHHHH
Q 015416 248 AKSFFDIMVKKLKMDDASYKFMMKALSDG--GKLDEILEIVGGILDDGGIEF------SEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
|..+++..+...+-...+|.-+..+|++- ++..+.++.|. ..-.++| ....|..++-.|...++++.|.
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999886667788888888888764 34444444444 3222344 3457778888899999999887
Q ss_pred HHHHH
Q 015416 320 KLMEK 324 (407)
Q Consensus 320 ~~~~~ 324 (407)
..+-+
T Consensus 303 ~tm~~ 307 (449)
T 1b89_A 303 ITMMN 307 (449)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-17 Score=136.75 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=114.2
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
.+..|..++..+...|++++|+.+|++++... +.+...+..++.++...|++++|...|+++.+..+. +..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELDSS------AAT 92 (243)
T ss_dssp --------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chH
Confidence 44556666666777777777777777776654 335666666666777777777777777776665432 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|...|++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 56666666666666666666666666543 3455566666666666666666666666665532 224555555556666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
..|++++|...++++.+.. +.+..++..++.+|...|++++|...++++....|.+..++..+
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6666666666666655432 23444555555566666666666666665555444444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-15 Score=129.14 Aligned_cols=223 Identities=9% Similarity=0.008 Sum_probs=123.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
++.++..++..+...|++++|+.+|+++.+.+ +..++..+..+|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 44455555566666666666666666655532 23445555555555 566666666666655543
Q ss_pred cccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC
Q 015416 122 VNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
+..++..+..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 33355555555555 566666666666655543 45555555555555 566666666666655543 3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 194 EYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 194 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+.. +...
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 220 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHH
Confidence 4445555555555 555666666666555532 34455555555555 556666666665555421 2445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 015416 266 YKFMMKALSD----GGKLDEILEIVGGILDD 292 (407)
Q Consensus 266 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 292 (407)
+..+...|.. .+++++|+..|+++.+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555555 55556666666555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=146.70 Aligned_cols=311 Identities=10% Similarity=-0.039 Sum_probs=218.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCc-----cCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGV-----VSDGVVYGSLMKGYFMK--GMEEEAMECYNEAVGENSSVK 81 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~ 81 (407)
...+|+.+..+|...|++++|...|++..+..+.. ...+.++..++.++... +++++|+..|++++..+|
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--- 169 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--- 169 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC---
Confidence 45679999999999999999999999887642111 11245677777666654 579999999999999874
Q ss_pred CchhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 82 MSAVANNSVLDA---LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 82 ~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
.+...+..+..+ +...++.++|++.|++.++..+. +..++..+...+.. .|++++|.+++++.....
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 355566555544 44568888999999999887654 45566666655544 467889999999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------------------CChHHHHH
Q 015416 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV-------------------NRVDDGAT 215 (407)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------------g~~~~a~~ 215 (407)
+.+..++..++..|...|++++|+..|+++.+.. +.+..++..+..+|... +..+.|..
T Consensus 244 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 244 -PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp -SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 5677889999999999999999999999998853 33466777777666432 23567888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHHHh
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA---SYKFMMK-ALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++++.+.. +.+..++..++..|...|++++|...|++.+...+++.. .+..+.. .+...|++++|+..|.+++.
T Consensus 322 ~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 322 HLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888887743 334557889999999999999999999999884443322 2333333 34578999999999998876
Q ss_pred cCC----------------------CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 292 DGG----------------------IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 292 ~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
... -|.+...+..++.+|...|++++|++.+++..+.+..
T Consensus 401 i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 421 1445668888999999999999999999998876533
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=150.46 Aligned_cols=307 Identities=14% Similarity=0.093 Sum_probs=232.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SS 79 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 79 (407)
.+....+......+...|++++|+..|+++.+.. +.+ ..+|..++.++...|++++|+..|++++... ..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 4566677888899999999999999999999862 223 3578899999999999999999999876531 11
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-------------------- 139 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------- 139 (407)
.+....++..+..+|...|++++|...++++.+..+..........++..+...|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 122356788899999999999999999998876532211111124478889999999999
Q ss_pred HHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 015416 140 FKDAIEVFRKMGEY----RCS-PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNR 209 (407)
Q Consensus 140 ~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~ 209 (407)
+++|...+.+.... +.. ....++..++..|...|++++|...++++.+... .++ ..++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887542 111 1234788899999999999999999999875210 112 3478889999999999
Q ss_pred hHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCC
Q 015416 210 VDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKMD----DASYKFMMKALSDGGK 278 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~ 278 (407)
+++|...+++..+... .++ ..++..++..|...|++++|...+++.... ...+ ..++..+..+|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999874210 111 457889999999999999999999998871 1112 5678899999999999
Q ss_pred HHHHHHHHHHHHhcC---C-CCCcHHHHHHHHHHHhhcCcHH
Q 015416 279 LDEILEIVGGILDDG---G-IEFSEELQEFVKGELSKEGREE 316 (407)
Q Consensus 279 ~~~A~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~ 316 (407)
+++|...++++.+.. + .+.....+..++.++...|+..
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999987641 1 1222346667777777777663
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-16 Score=130.13 Aligned_cols=201 Identities=14% Similarity=0.057 Sum_probs=135.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+..++..+...|++++|...|+++.+..+. +..++..++.+|...|++++|.+.|+++.... +.+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 455666666666777777777777776665432 44566666677777777777777777766653 34556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
.++..|...|++++|..+|+++.+.+..| +...+..++.+|...|++++|..+++++.+.. +.+...+..++..|...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 67777777777777777777776522233 34556666677777777777777777776643 33466677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|++++|..+++.+....+.+...+..+...+...|++++|.++++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777766666777777777777777777777777777765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-15 Score=127.64 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=201.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 56788889999999999999999999999843 55688899999999 999999999999999875 7
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH
Q 015416 159 TLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLA 230 (407)
Q Consensus 159 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 230 (407)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 8899999999999 999999999999999865 77889999999999 999999999999999865 677
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 231 VYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD----GGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 231 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.+..+...|.. .+++++|..+|++..+. .++..+..+...|.. .+++++|+..|+++.+.. + ...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHH
Confidence 88899999998 99999999999999874 357888999999999 999999999999999862 2 6677
Q ss_pred HHHHHHHhh----cCcHHHHHHHHHHHHHhhHH
Q 015416 303 EFVKGELSK----EGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 303 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 331 (407)
..++.+|.+ .+++++|...+++..+.+..
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888999998 99999999999999877744
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=141.60 Aligned_cols=249 Identities=10% Similarity=-0.055 Sum_probs=197.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 58 FMKGMEEEAMECYNEAVGENSSV-KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
...|++++|+..|+++++..+.. +.+..++..++.++...|++++|...|+++.+..+. +..++..++.+|..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Confidence 34588999999999999864211 235678889999999999999999999999988654 66789999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.|++++|+..|+++.... +.+...+..++.+|...|++++|...|+++.+. .|+.......+..+...|++++|...
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999865 457889999999999999999999999999984 45544455555666778999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK----MDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+..... +++...+ .++..+...++.++|...+.......+ .+..++..++.+|...|++++|+..|++++..
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 98888653 3444444 477778888899999999998876322 12578899999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 293 GGIEFSEELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
. +.+.. ....++...|++++|++.+
T Consensus 245 ~--p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 N--VHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--CTTCH---HHHHHHHHHHHHHHC----
T ss_pred C--chhHH---HHHHHHHHHHHHHhhHHHH
Confidence 3 22322 2355677889999988776
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=126.22 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..+..++..+...|++++|.+.|+++.+..+. +..++..++.+|...|++++|..+|+++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 33444444444444444444444444443322 23344444444444444444444444444332 223344444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 165 LIDQLCKN-GMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 165 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++..+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 44444444 555555555544444111121 3344444455555555555555555554432 22344555555555555
Q ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 243 GMLDEAKSFFDIMVKKLK-MDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
|++++|..+++++....+ .+...+..+...+...|+.+.|..+++.+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555555444 4445555555555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-16 Score=130.56 Aligned_cols=208 Identities=15% Similarity=0.058 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccch
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 126 (407)
+..|..++..+...|++++|+.+|++++... +.+..++..++.+|...|++++|.+.|+++.+..+. +..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHH
Confidence 4566677777777777777777777777665 335667777777777777777777777777766543 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+..++.+|...|++++|.++|+++...+..| +...+..++.++...|++++|...|+++.+.. +.+...+..++..|.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 7777777777777777777777776622223 44566777777777777777777777777642 234667777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
..|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....|.+...
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 7788888888887777643 3456677777777777888888888888777755545443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-15 Score=126.50 Aligned_cols=208 Identities=13% Similarity=0.019 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccch
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 126 (407)
+.+|..++..+...|++++|+.+|++++... +.+...+..++.+|...|++++|...|+++.+..+. +..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHH
Confidence 3444455555555555555555555555443 223444555555555555555555555555544322 3334
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQ-GRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 127 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+..++.+|... |++++|...|+++...+..| +...+..++.++...|++++|+..|+++.+.. +.+...+..++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 45555555555 55555555555555421112 23445555555555555555555555555431 22344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (407)
...|++++|..+++++.+.....+...+..+...+...|+.+.|..+++.+....|.++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 556666666666655554321134445555555555566666666666555543333333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=134.15 Aligned_cols=213 Identities=14% Similarity=0.151 Sum_probs=152.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 82 MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
.....|..++..+...|++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHH
Confidence 34556777788888888999999999888876543 56678888888888999999999888887764 456778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 8888888888899999998888887753 3457778888888888888888888888888753 4467788888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
.|++++|...|+++....+.+..++..++.+|...|++++|...|+++.+.. +.+...+..+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~ 233 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAK 233 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHH
Confidence 8888888888888888777778888888888888888888888888888763 4444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=150.44 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=116.0
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHH
Confidence 5688999999999883 3359999999999999999999999653 35668999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
+|+.+++..++.. + ++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+
T Consensus 79 eAi~yl~~ark~~--~-----~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 79 ELVKYLQMARKKA--R-----ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred HHHHHHHHHHHhC--c-----cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999888777642 1 45578889999999999999988774 37778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~ 205 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----V 205 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----T
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----h
Confidence 9977 37899999999999999999999998 278899999999999999999966665432 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhc--CcHHHHHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKE--GREEEVVKLME 323 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 323 (407)
++.-...++..|.+.|++++|+.+++..+... +-....|..++.+|.+- |+..+.++.|.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55556679999999999999999999999864 55667888887777654 45555555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=148.63 Aligned_cols=286 Identities=11% Similarity=0.037 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
....+..++..+...|++++|+.+|++++...++.+. -..++..+..+|...|++++|...|+++.+............
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445667888899999999999999999987632110 024788889999999999999999998876421111111145
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEY----R-CSPDTLSFNNLIDQLCKNGM-----------------LAEAEELY 182 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 182 (407)
.++..+..+|...|++++|...|++.... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987653 1 11224478889999999999 99999999
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 183 GEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 183 ~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..++..|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887642 1111 245788889999999999999999999875210 112 237888999999999999999999
Q ss_pred HHHHhcCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 253 DIMVKKLK--M----DDASYKFMMKALSDGGKLDEILEIVGGILDDGG----IEFSEELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 253 ~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
++.....+ . ...++..++.+|...|++++|..++++++.... .......+..++.+|.+.|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99887221 1 256788899999999999999999999876421 1122347788899999999999999999
Q ss_pred HHHHHhhHH
Q 015416 323 EKKEREKAE 331 (407)
Q Consensus 323 ~~~~~~~~~ 331 (407)
++.......
T Consensus 367 ~~al~~~~~ 375 (411)
T 4a1s_A 367 EQHLQLAXX 375 (411)
T ss_dssp HHHHHHCCH
T ss_pred HHHHHHHhh
Confidence 998865544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-18 Score=162.58 Aligned_cols=163 Identities=11% Similarity=0.083 Sum_probs=131.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGE---YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
..+|++||++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34899999999999999999999988754 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 015416 201 MDACFEVNRV-DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD------DASYKFMMKAL 273 (407)
Q Consensus 201 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 273 (407)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++..++.|+ ..+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999988655543 3444444443344333 33445566666
Q ss_pred HhcC---------CHHHHHHHHHHHH
Q 015416 274 SDGG---------KLDEILEIVGGIL 290 (407)
Q Consensus 274 ~~~g---------~~~~A~~~~~~~~ 290 (407)
.+.+ ..++-..+|++=+
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHHH
Confidence 6655 2455556665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=149.09 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCC
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG----VVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SSVKM 82 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (407)
...+..+...+...|++++|+..|+++.+.. +.+. .+|..++.+|...|++++|+..|++++... .+.+.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 3445667788899999999999999999962 2233 478899999999999999999999987641 11133
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-----------------HHHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-----------------FKDAIE 145 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~ 145 (407)
...++..+..+|...|++++|...|+++.+.............++..+..+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 566788899999999999999999999876521111011145578889999999999 999999
Q ss_pred HHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 015416 146 VFRKMGEY----RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 146 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
.+++.... +. +....++..+...|...|++++|+..+++..+... .++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887542 11 11234788899999999999999999999875311 112 3378889999999999999999
Q ss_pred HHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 216 YFRKMVDSG--LR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---L---KMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 216 ~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.++++.+.. .. ....++..++..|...|++++|..++++.... . .....++..+..+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999887521 11 11457888999999999999999999998871 1 1124578889999999999999999
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
+|+++...
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=141.79 Aligned_cols=303 Identities=13% Similarity=0.066 Sum_probs=219.7
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcc--hHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCCch
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGV--VYGSLMKG--YFMKGMEEEAM-----------ECYNEAVGENSSVKMSA 84 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 84 (407)
+.+.+++++|..+++++.+..+....+.. .|..++.. ....++++.+. +.++.+.... .+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~----~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ----ARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT----HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC----CCc
Confidence 46789999999999999886444433433 33444332 22334455555 6666665422 112
Q ss_pred hh------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC
Q 015416 85 VA------NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SP 157 (407)
Q Consensus 85 ~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 157 (407)
.. +...+..+...|++++|...|+++.+.............++..++.+|...|++++|+..+.+..+... .+
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 22 223667788999999999999999875221111111346889999999999999999999998865310 11
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 015416 158 -----DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDS---- 223 (407)
Q Consensus 158 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 223 (407)
...+++.++.+|...|++++|+..|+++.+... .++ ..++..+..+|...|++++|...+++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 235788999999999999999999999875211 112 347888999999999999999999998862
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 015416 224 GL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGK---LDEILEIVGGILDDGG 294 (407)
Q Consensus 224 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 294 (407)
+. +....++..++..|...|++++|...+++.... .+.....+..+...+...|+ +++|+.++++...
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--- 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--- 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---
Confidence 22 334568999999999999999999999998871 22223346778888889999 8888888887622
Q ss_pred CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 295 IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.....+..++..|...|++++|...+++.....
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 24455578889999999999999999999886543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-14 Score=133.96 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG-------QGRFK-------DAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
.+..+|++++...+. +...|..++..+.+ .|+++ +|..+|++.++.-.|.+...|..++.
T Consensus 256 ~a~~~y~~al~~~p~------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334445555444322 45577777777775 79987 89999999987323556889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPD-E-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK-LVQVGM 244 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 244 (407)
.+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999984 454 3 578889999999999999999999999752 2233444433333 346899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
+++|..+|+..++..|.++..|..++..+.+.|+.++|..+|++++.....+|. ...|...+....+.|+.+.+..+.
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999977778999999999999999999999999999987433332 447777788888899999999999
Q ss_pred HHHHHhhH
Q 015416 323 EKKEREKA 330 (407)
Q Consensus 323 ~~~~~~~~ 330 (407)
+++.+.-+
T Consensus 487 ~r~~~~~p 494 (530)
T 2ooe_A 487 KRRFTAFR 494 (530)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHCc
Confidence 98876554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-17 Score=142.34 Aligned_cols=279 Identities=14% Similarity=0.125 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCC
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SSVKM 82 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (407)
...+......+...|++++|+.+|+++.+..+ .+ ..++..++..+...|++++|+..|++++... ...+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 34455667778888999999999988888622 23 3567788888888899999988888876431 00122
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------HHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR--------------------FKD 142 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~ 142 (407)
...++..+..++...|++++|...+++..+.............++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 355677788888888888888888888765432211101123366777777777777 777
Q ss_pred HHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHH
Q 015416 143 AIEVFRKMGEY----RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 143 A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~ 212 (407)
|...+++.... +. +.....+..+...+...|++++|...++++.+... .++ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 77766665431 10 01122455556666666666666666665543100 001 1244445555555555555
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHhcCCHHH
Q 015416 213 GATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL--KM----DDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 213 a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~ 281 (407)
|...+++..+... .++ ..++..++..|...|++++|...++++.... .. ...++..+..+|...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 5555555442100 001 2244444455555555555555554444310 00 12233444444444444444
Q ss_pred HHHHHHHHHh
Q 015416 282 ILEIVGGILD 291 (407)
Q Consensus 282 A~~~~~~~~~ 291 (407)
|...++++..
T Consensus 322 A~~~~~~a~~ 331 (338)
T 3ro2_A 322 AMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=142.23 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=214.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS-AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
...+...+..+...|++++|+.+|+++++..++.++. ...+..+..++...|++++|...++++...............
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3456667888999999999999999999876331110 467888999999999999999999987654211110111455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGM--------------------LAEAEE 180 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 180 (407)
++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998765310 122 3378889999999999 999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 015416 181 LYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 181 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
.+++.... +..+ ...++..+...|...|++++|...++++.+... .++ ..++..++..+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887542 1111 145788889999999999999999999874210 111 2378889999999999999999
Q ss_pred HHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 251 FFDIMVKKLK--MD----DASYKFMMKALSDGGKLDEILEIVGGILDDG----GIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 251 ~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
++++.....+ .+ ..++..++.+|...|++++|...++++.... ........+..++.+|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9999887211 12 5678889999999999999999999987642 111224477789999999999999999
Q ss_pred HHHHHHHhh
Q 015416 321 LMEKKEREK 329 (407)
Q Consensus 321 ~~~~~~~~~ 329 (407)
.+++.....
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999987654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=157.76 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSD---KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR 234 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (407)
-..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CcHHHHHHHHHH
Q 015416 235 LVGKLVQVGML-DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE----FSEELQEFVKGE 308 (407)
Q Consensus 235 l~~~~~~~g~~-~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~ 308 (407)
|+.++++.|+. ++|.++|++|.+ |..||..+|++++..+.+. ..++.++++...+..+ |...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 789999999999 9999999999998766653 4555555554433211 112233445555
Q ss_pred HhhcC
Q 015416 309 LSKEG 313 (407)
Q Consensus 309 ~~~~g 313 (407)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 65544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-14 Score=123.98 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhc----CCh----hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH-------cCCH-------HHHH
Q 015416 10 PVVYSYLMLGFVRD----GDS----DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM-------KGME-------EEAM 67 (407)
Q Consensus 10 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~ 67 (407)
...|...+....+. ++. ++|..+|++.... .|.++..|..++..+.. .|++ ++|.
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 34566666654443 233 6777888888875 34577788887777653 4764 7888
Q ss_pred HHHHHHHh-CCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc-hHHHHHHHHHhcCCHHHHHH
Q 015416 68 ECYNEAVG-ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG-SFNVMADGYCGQGRFKDAIE 145 (407)
Q Consensus 68 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 145 (407)
.+|++++. .. +.+...|..++..+...|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..
T Consensus 85 ~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 85 NIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887 34 335667788888888888888888888888775432 333 67777788888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 146 VFRKMGEYRCSPDTLSFNNLIDQLC-KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
+|++.++.. +++...|...+.... ..|++++|..+|+++++.. +.+...|..++..+...|++++|..+|++++...
T Consensus 156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 888887754 344445543333322 2577788888887776642 2346667777777777777777777777777642
Q ss_pred -CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 225 -LRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 225 -~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
++| ....|..++..+...|+.+.|..+++++.+..|.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 343 3557777777777777777777777777764443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=139.91 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=185.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF-KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
.+++++..++......+. +...+..+..+|...|++ ++|++.|++.++.. +.+...|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~------~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 366777777776654432 667888899999999999 99999999998875 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEV---------NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV------ 242 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 242 (407)
|+..|+++++. .|+...+..+..+|... |++++|+..|+++++.. +.+...|..++.+|...
T Consensus 156 A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999984 57778888899999998 99999999999999853 44678999999999998
Q ss_pred --CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 243 --GMLDEAKSFFDIMVKKLK---MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 243 --g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
|++++|...|++.....| .+...|..++.+|...|++++|+..|+++++.. +.+...+..+..++...|++++
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999666 789999999999999999999999999999874 5667788899999999999999
Q ss_pred HHHHHHHHH
Q 015416 318 VVKLMEKKE 326 (407)
Q Consensus 318 A~~~~~~~~ 326 (407)
|+..+.++.
T Consensus 311 Ai~~~~~~~ 319 (474)
T 4abn_A 311 LLESKGKTK 319 (474)
T ss_dssp HHHHTTTCC
T ss_pred HHHHhcccc
Confidence 998877763
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=130.59 Aligned_cols=322 Identities=11% Similarity=0.003 Sum_probs=225.6
Q ss_pred CCcCHHHHHHHHHHH--HhcCChhhHHHHHHHHHHhhCCccCCc--chHHHHHHHH--HHcCCHHHHH---------HHH
Q 015416 6 FVADPVVYSYLMLGF--VRDGDSDGVFRLFEELKEKLGGVVSDG--VVYGSLMKGY--FMKGMEEEAM---------ECY 70 (407)
Q Consensus 6 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~A~---------~~~ 70 (407)
+.|+..+-+.|-.-| .+.+++++|..+++++.+.......|. ..|..++..- ...+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666666666666 789999999999999887633333333 2334443321 1112222222 566
Q ss_pred HHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHH
Q 015416 71 NEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFR 148 (407)
Q Consensus 71 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 148 (407)
+.+........+ ....+...+..+...|++++|+..|+++.+.............++..++.+|...|+++.|+..+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 655432200000 011234456677899999999999999987532211111145578899999999999999999999
Q ss_pred HHhhCCC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 149 KMGEYRC-SP-----DTLSFNNLIDQLCKNGMLAEAEELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 149 ~~~~~~~-~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
+...... .+ ...+++.++.+|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765310 01 2447889999999999999999999988752 1111 1457888999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 015416 218 RKMVD-----SGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGK---LDEILE 284 (407)
Q Consensus 218 ~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~ 284 (407)
++..+ .. +....++..++..|...|++++|...+++.... .+.....+..+...+...|+ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99886 33 333668899999999999999999999999882 22223456666677778888 888888
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 285 IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
.+++... .+.....+..++..|...|++++|...+++.......
T Consensus 325 ~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 325 YFEKKNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8876322 2444557778999999999999999999998776544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.4e-14 Score=121.15 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH-------hcCCH-------HHHHHHHHHHhh-CCCCCCHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC-------GQGRF-------KDAIEVFRKMGE-YRCSPDTLSFNNL 165 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l 165 (407)
++|..+|++++...+. +...|..++..+. +.|++ ++|..+|++.+. .. +.+...|..+
T Consensus 33 ~~a~~~~~~al~~~p~------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 6778888888876544 5667777777765 35775 899999999988 33 4466789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPD-EY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV-QV 242 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 242 (407)
+..+...|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999984 454 33 78889999999999999999999999754 344555655444433 36
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
|++++|..+|++.++..|.+...|..++..+.+.|++++|+.+|++++....++| ....|..++..+.+.|+.++|..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999997777899999999999999999999999999998633354 45688888888999999999999
Q ss_pred HHHHHHHhhH
Q 015416 321 LMEKKEREKA 330 (407)
Q Consensus 321 ~~~~~~~~~~ 330 (407)
+++++.+..+
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9998876553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.7e-15 Score=117.43 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
+.+|..+...|.+.|++++|++.|++..+. .|-++.+|..++.+|.+.|++++|+..+..+.... +.+...+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHH
Confidence 344455555555555555555555555543 12244445555555555555555555555554443 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+...+...++++.|...+.+.....+. +..++..+..+|.+.|++++|++.|++.++.. |.+..+|..++.+|
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHH
Confidence 444555555555555555555444332 33344445555555555555555555544433 33344455555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 015416 170 CKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~ 187 (407)
.+.|++++|+..|+++++
T Consensus 152 ~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHh
Confidence 555555555555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=138.48 Aligned_cols=215 Identities=15% Similarity=0.064 Sum_probs=190.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH
Q 015416 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF 140 (407)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 140 (407)
.+++++..++...... +.+...+..+..++...|++ ++|+..|+++++..+. +..+|..+..+|...|++
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCH
Confidence 4677788888777654 55788999999999999999 9999999999988654 677999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 015416 141 KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN---------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV---- 207 (407)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 207 (407)
++|+..|++.++.. |+...+..+..+|... |++++|+..|+++++.. +.+...|..+..+|...
T Consensus 154 ~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999875 7788999999999999 99999999999999853 33588899999999998
Q ss_pred ----CChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 015416 208 ----NRVDDGATYFRKMVDSGLR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 208 ----g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 280 (407)
|++++|+..|+++.+.. + .+...|..++.+|...|++++|...|++.....|.+..++..+..++...|+++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 2 378899999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHH
Q 015416 281 EILEIVGGI 289 (407)
Q Consensus 281 ~A~~~~~~~ 289 (407)
+|+..+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 998866543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-14 Score=112.69 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+..+|..++..|...|++++|+..|++.++.. +-+..++..+..+|...|++++|...+..+.... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555555432 1234445555555555555555555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
.+...++++.|...+.+.....|.+..++..++.+|...|++++|++.|+++++.+ |.+...+..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555555444555555555555555555555555555555542 3444455555555555555555
Q ss_pred HHHHHHHHHHh
Q 015416 318 VVKLMEKKERE 328 (407)
Q Consensus 318 A~~~~~~~~~~ 328 (407)
|+..+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-13 Score=133.42 Aligned_cols=313 Identities=16% Similarity=0.156 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
...+.+|...|++.+|+++|+++.-.......+...-+.++.+..+. +..+..++.++.-... ...+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---------~~eIA~I 1058 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---------APDIANI 1058 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---------HHHHHHH
Confidence 45667888899999999999988853100112344555666666666 5566666666554211 3347777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|.+++|..+|++... .....+.+ +-..+++++|.++.++. -+..+|..++.++...|
T Consensus 1059 ai~lglyEEAf~IYkKa~~----------~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV----------NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC----------HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 8889999999999988631 11122223 23778899999888865 35778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++++|+..|.+. -|...|..++.+|.+.|++++|.++|....+.. ++......++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999998664 367788889999999999999999999888743 34444446888999998888544332
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHH
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAK 333 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 333 (407)
..++...+..++..|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++......-..
T Consensus 1191 -----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A 1191 -----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred -----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 2456677778999999999999999999985 3688899999999999999999988854432110
Q ss_pred -------HHHHHHHHHHH--HHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 334 -------AREAEAAEAAK--RSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 334 -------~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
..++..+.... -.........+...|...| .++||+.+.+...+.+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G---------~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG---------YFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhccC
Confidence 00011000000 0001111223344466666 9999999998888776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=134.06 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------C
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-----SSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH------N 115 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~ 115 (407)
..++..++..+...|++++|+.+|++++... +..+....++..+..+|...|++++|...|+++.... .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456666666666777777777776666520 0013345556666667777777777777776665541 1
Q ss_pred CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
.+. ...++..+..+|...|++++|...|+++... +. +.....+..++..+...|++++|+.+|+++.+.
T Consensus 107 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 107 HPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 3445666666777777777777776666543 11 112335566666666677777777766666542
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 189 ------GVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 189 ------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..|. ..++..+..+|...|++++|..+++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11121 34555666666666666666666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-13 Score=133.95 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=157.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
+...+...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..++.++.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLi---e~i~nldrAiE~Aervn--------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-------NTSAVQVLI---EHIGNLDRAYEFAERCN--------EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHH---HHHhhHHHHHHHHHhcC--------CHHHHHHHHHHHH
Confidence 34455556666666666655421 111111221 14455666666555431 2445666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..|++++|+..|.+.. +...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++
T Consensus 1117 ~~G~~kEAIdsYiKAd-----------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKAD-----------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred hCCCHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 6666666666664431 44455666666666666666666666555433 2322233466666666665
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
++...+. + .++...|..++..|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5432221 1 234445555666666666666666666653 25666666666666666666666655
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHH--H
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEA--K 333 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 333 (407)
. +..+|..+..+|...|++..|..+... +..++..+..++..|.+.|.+++|+.+++......... .
T Consensus 1248 ~-----n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 N-----STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred C-----CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 2 446666666666666666666655442 23456667788888999999999999998876543222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 015416 334 AREAEAAEAAKRSARAAIASL 354 (407)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~ 354 (407)
...+.....+++|++..-+..
T Consensus 1317 ftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 222444455566666554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-15 Score=136.40 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=144.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME---EEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+...+.+.|++++|+++|++..+. + ++..+..|...|...|++ ++|+.+|+++... +...+..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC----------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHH
Confidence 667778899999999999999886 4 666777888888888888 8999999998753 4566777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCCHHHHHH
Q 015416 93 ALCNNG-----KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD---AIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 93 ~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
++...+ ++++|+..|++..+.+.. .++..|...|...+...+ +.+.+......| +...+..
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 566655 788999999999886633 366777777766554333 333343333332 2334445
Q ss_pred HHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEE----LYGEMSDKGVNPDEYTYGLLMDACFEVN---RVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+...|...+.++++.. +++.... .++..+..+...|...| +.++|+..|++..+.| +++...+..|..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 5555555553333322 2222222 12225555555555555 5556666666666554 334444455555
Q ss_pred HHHhc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 238 KLVQV----GMLDEAKSFFDIMVKKLKMDDASYKFMMKA-L--SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 238 ~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.|... +++++|..+|++.. +.++..+..+... + ...+++++|+.+|++..+. .+...+..++.+|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 55443 45666666666655 3345555555555 2 3455666666666665543 13444445555554
Q ss_pred hcC-----cHHHHHHHHHHHH
Q 015416 311 KEG-----REEEVVKLMEKKE 326 (407)
Q Consensus 311 ~~g-----~~~~A~~~~~~~~ 326 (407)
.| ++++|..++++..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT
T ss_pred -cCCCCCCCHHHHHHHHHHHh
Confidence 33 5666666665554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=130.51 Aligned_cols=248 Identities=15% Similarity=0.179 Sum_probs=176.6
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP--KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---- 153 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 153 (407)
.+.+..++..++..+...|++++|..+|+++.+..... ........++..+..+|...|++++|..+|++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999988741000 000115567889999999999999999999998764
Q ss_pred --C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 154 --R-CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK------GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 154 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
+ .+....++..++..|...|++++|..+|+++.+. +..| ....+..+...|...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 1223557889999999999999999999998763 2222 3567888999999999999999999998863
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCC-------HHHHHHHHHHHHhcCCHHH
Q 015416 224 ------GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--------LKMD-------DASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 224 ------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-------~~~~~~l~~~~~~~g~~~~ 281 (407)
+..| ...++..++..|...|++++|..+++++... ..+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 2447888999999999999999999999861 1111 1222333334445566666
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+...+...... .+.....+..++.+|.+.|++++|...+++..+..
T Consensus 263 a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 263 YGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 77777777654 25566688899999999999999999999987643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=130.78 Aligned_cols=259 Identities=10% Similarity=-0.013 Sum_probs=192.0
Q ss_pred HHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CCchhhHHHHHHHHHhcCCHHHH
Q 015416 31 RLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV---KMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
++++.+... ..+.+ ...+...+..+...|++++|+..|+++....... +....++..++.+|...|+++.|
T Consensus 85 ~~~~~i~~~--~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 85 DLLLEIDKK--QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHhc--CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776553 11111 1123347778889999999999999998752111 11456788999999999999999
Q ss_pred HHHHHHHHhcCCCCCc-cccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 015416 104 LKLFDRMKNEHNPPKR-LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~ 177 (407)
...+.+..+....... ......+++.++.+|...|++++|+..|++...... .++ ..++..++.+|...|++++
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999998875333211 111345788999999999999999999998865310 012 2478889999999999999
Q ss_pred HHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---H
Q 015416 178 AEELYGEMSDK----GV-NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRPNLAVYNRLVGKLVQVGM---L 245 (407)
Q Consensus 178 a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~ 245 (407)
|+..|++..+. +. +....++..+..+|...|++++|...+++..+. +-+.....+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999998762 22 333677899999999999999999999998752 111122345778888899999 7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++|+.++++.. ..+.....+..++..|...|++++|...|+++...
T Consensus 323 ~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKM-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888877762 22234557888999999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-13 Score=121.34 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=128.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
....+...|++++|...+++++...+...+ ...++..+..++...|++++|...+++................++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334444555555555555555544311100 011334444555555555555555555544321110000011224445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEY----RCS--P-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN--P--DEYTYGL 199 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p--~~~~~~~ 199 (407)
...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55556666666666655554331 111 1 1223444555566666666666666655432111 0 1234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRP--NLAVYN----RLVGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFM 269 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l 269 (407)
+...+...|++++|...+++.......+ ...... ..+..+...|++++|..+++......+.+ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 5555666666666666666554321011 111111 12233556666666666666555421111 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCCcH-HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 270 MKALSDGGKLDEILEIVGGILDDG---GIEFSE-ELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...+...|++++|...++++.... +.++.. ..+..++.++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666666666666666554421 111111 2444555566666666666666666544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-13 Score=124.88 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=149.4
Q ss_pred ccchHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHH
Q 015416 123 NLGSFNVMADGYCGQG---RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN----GMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
++.++..|..+|...| ++++|++.|++....| +++...+..+...|... +++++|+..|++.. .| ++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHH
Confidence 3447888888998899 8999999999998887 56666667777777654 68999999999987 33 455
Q ss_pred HHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHH
Q 015416 196 TYGLLMDA-C--FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-----MLDEAKSFFDIMVKKLKMDDASYK 267 (407)
Q Consensus 196 ~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~ 267 (407)
.+..+... | ...+++++|..+|++..+.| +...+..|...|. .| ++++|..+|++.. +.++..+.
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~ 322 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH
Confidence 66667776 4 46789999999999998865 6778888888887 45 8999999999887 66788888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhHH
Q 015416 268 FMMKALSD----GGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK----EGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 268 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 331 (407)
.+...|.. ..++++|..+|++..+.+ +......|+.+|.. ..+..+|..++++..+.+..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888877 348999999999988752 23445556666654 45888999998888766644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=120.14 Aligned_cols=277 Identities=12% Similarity=0.046 Sum_probs=201.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc-----chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---Cch
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG-----VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK---MSA 84 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 84 (407)
+......+...|++++|...+++.... .+++. .+++.+...+...|++++|...++++....+... ...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344556777899999999999999885 23232 2567788889999999999999999886432111 112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--ccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CC
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL--AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS----PD 158 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 158 (407)
.++..+...+...|++++|...+++..+........ .....++..+..++...|++++|...+++....... ..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 345678888999999999999999987643211000 003346677889999999999999999988764311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD--EYTYG----LLMDACFEVNRVDDGATYFRKMVDSGLRP---NL 229 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 229 (407)
..++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 35678889999999999999999999875311111 11111 23345779999999999999987643211 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDD-ASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+..+...+...|++++|...++..... .+++. .++..+..++...|+.++|...+++....
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678889999999999999999998761 11122 36777888899999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=133.10 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=103.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++.+|+.|+.+|.+.|++++|+..|+++++.+ +-+..+|..+..+|.+.|++++|+..|+++++..+. +..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~ 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FAD 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Confidence 45566666666666666666666666666655 334566666666666666666666666666665443 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..+..+|...|++++|++.|++.++.. +.+...|+.++.+|...|++++|+..|+++++.. +-+...+..++.+|.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHH
Confidence 66666666666666666666666666554 3345566666666666666666666666666532 123556666666666
Q ss_pred hcCChHHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD 222 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~ 222 (407)
..|++++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 66666666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=130.86 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|+.|...|.+.|++++|+..|++..+. .|-+..+|+.++.+|.+.|++++|+..|+++++.+ +.+..+|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4677999999999999999999999999996 34478899999999999999999999999999987 44788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+..+|...|++++|++.|+++++..+. +..+++.+..+|...|++++|++.|++.++.. +.+...|..++.+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence 9999999999999999999999998755 67799999999999999999999999999875 5567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 015416 169 LCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~ 187 (407)
+...|++++|.+.++++.+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=103.66 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
.+..++..+...|++++|...|+++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455555555566666665555555432 3344455555555555555555555555555431 223444445555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....+.+..++..++.++...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554432 233444445555555555555555555555444444444555555555555555555555
Q ss_pred HHHHHh
Q 015416 286 VGGILD 291 (407)
Q Consensus 286 ~~~~~~ 291 (407)
++++..
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=104.02 Aligned_cols=166 Identities=18% Similarity=0.114 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 356667777778888888888888777642 3356677777788888888888888888877643 34566777778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
...|++++|..+++++....+.+...+..++.++...|++++|...++++.... +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888877666777778888888888888888888888877763 455667777788888888888888
Q ss_pred HHHHHHHHhh
Q 015416 320 KLMEKKEREK 329 (407)
Q Consensus 320 ~~~~~~~~~~ 329 (407)
..++++....
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 8888776544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-13 Score=109.49 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=164.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.|+..|......+...|++++|+..|++..+. ..+++...+..++.++...|++++|+..|++++..+ +.+..+|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHH
Confidence 46688889999999999999999999999996 322677888889999999999999999999999987 4478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc-------chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--C
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL-------GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP--D 158 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 158 (407)
..+..+|...|++++|+..|++..+..+. +. .+|..+...+...|++++|+..|++.++.. +. +
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 152 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPG------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWK 152 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCccc
Confidence 99999999999999999999999988654 33 458889999999999999999999999864 23 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
...|..+..+|...| ..+++++...+ ..+...|.... ....+.+++|...|++..+.. +.+..+...+..
T Consensus 153 ~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 153 TDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 567888888886554 44556666543 23344444333 334567899999999999853 334445544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-13 Score=119.50 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=183.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc-cccc
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSV---KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA-VNLG 125 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~ 125 (407)
|...+..+...|++++|+..|+++....... +....++..++.+|...|+++.|...+.+..+......... ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4456777889999999999999998753211 12356788899999999999999999999876533211100 1355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY----RCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSD-----KGVNPDEY 195 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~ 195 (407)
+++.++.+|...|++++|++.|++.... +.++ ...++..++.+|...|++++|+..|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7889999999999999999999987653 1111 134788899999999999999999999886 43 22377
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGL---RPN-LAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
++..+..+|.+.|++++|...+++..+... .+. ...+..+...|...++ +.+|+.+++... ..+.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHH
Confidence 888999999999999999999999986321 122 3456667777778888 778888777632 12223456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 269 MMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++..|...|++++|...|+++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=107.14 Aligned_cols=196 Identities=7% Similarity=-0.023 Sum_probs=104.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
+.+...+...+..+...|++++|+..|+++++..+.+ +...+..++.++...|++++|+..|++..... +.+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 77 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLAN 77 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHH
Confidence 3455566666666666666666666666666654433 44455556666666666666666666666543 23344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---LA 230 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~ 230 (407)
.|..++.+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ..
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 56666666666666666666666665532 1123 33555555555666666666666666552 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..++.+|...| ..+++.+....+.+...+.... ....+.+++|+..|+++++.
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555555554332 2233333332223333332222 22234456666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=112.48 Aligned_cols=239 Identities=11% Similarity=0.008 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHc--C-CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK--G-MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
.+|.+++.+..+. .+++...| .++ +. + ++++|...|+++ +.+|...|++++|
T Consensus 2 ~~a~~~~~~a~k~---~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 56 (292)
T 1qqe_A 2 SDPVELLKRAEKK---GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA-----------------ATIYRLRKELNLA 56 (292)
T ss_dssp CCHHHHHHHHHHH---SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH-----------------HHHHHHTTCTHHH
T ss_pred CcHHHHHHHHHHH---hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 3577777777775 33333333 222 22 2 477887777766 3356778888888
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHc-CCHHH
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-PD----TLSFNNLIDQLCKN-GMLAE 177 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~ 177 (407)
...|.+..+.............+|+.+..+|...|++++|+..|++.+..... .+ ..+++.+..+|... |++++
T Consensus 57 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~ 136 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 88888776642111100002457777888888888888888887776543100 01 23566666677664 77777
Q ss_pred HHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHH
Q 015416 178 AEELYGEMSDKGVNP-D----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL------AVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 178 a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~ 246 (407)
|+..|++.++..... + ..++..+...|...|++++|+..|+++.+....... ..+..++.++...|+++
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 777777665421000 1 234556666666666666666666666653221111 14555566666666666
Q ss_pred HHHHHHHHHHhcCCCCH-----HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDD-----ASYKFMMKALS--DGGKLDEILEIVGGIL 290 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 290 (407)
+|...|++.....|... ..+..++.+|. ..+++++|+..|+++.
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66666666655222111 12333344443 2445666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=115.46 Aligned_cols=164 Identities=21% Similarity=0.144 Sum_probs=127.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhC-----CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCCchhhHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLG-----GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-----SSVKMSAVANNS 89 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 89 (407)
....|++++|+.+|++..+... ..+....++..++.+|...|++++|+..|++++... ++.+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3567888999988888877421 123356788999999999999999999999988651 112445678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----C-CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEH-----N-PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------R-CS 156 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~ 156 (407)
+..+|...|++++|...|.++.... . .|. ...++..+..+|...|++++|..+|++.... + .+
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD----VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999988752 1 111 4668889999999999999999999988764 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
....++..++.+|...|++++|..+|+++.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788888899999999999999988875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=108.19 Aligned_cols=191 Identities=10% Similarity=-0.009 Sum_probs=122.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+-.+...+.+.|++++|+..|+.+.+..|+.+....++..++.+|...|++++|+..|++++...|+.+....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35566777888888999999999999999886332111267888899999999999999999999998765434445677
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 88 NSVLDALCN--------NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 88 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
..+..++.. .|++++|+..|+++++..+. +......+.......+ . -.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~~~~~~~----------~--------~~ 148 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN------HELVDDATQKIRELRA----------K--------LA 148 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT------CTTHHHHHHHHHHHHH----------H--------HH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC------chhHHHHHHHHHHHHH----------H--------HH
Confidence 788888888 89999999999999887654 2223322111000000 0 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP--DEYTYGLLMDACFEV----------NRVDDGATYFRKMVD 222 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~ 222 (407)
..+..++..|...|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 113445555666666666666666655421110 123455555555544 555666666666665
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=108.22 Aligned_cols=106 Identities=17% Similarity=0.095 Sum_probs=76.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.++..+..++..+.+.|++++|+..|++++...|..+....++..++.+|...|++++|+..|+++++..+.... ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hH
Confidence 356677778888888888888888888888876432222667778888888888888888888888887653211 33
Q ss_pred chHHHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 015416 125 GSFNVMADGYCG--------QGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 125 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~ 153 (407)
.++..+..++.. .|++++|+..|++++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 456667777777 77777777777776664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=111.39 Aligned_cols=232 Identities=15% Similarity=0.143 Sum_probs=161.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--CCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHH
Q 015416 95 CNNGKFDEALKLFDRMKNEHNP--PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------RC-SPDTLSFNNL 165 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 165 (407)
...|++++|+..|++.++.-.. .........++..+..+|...|++++|+..|++.... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888877777653100 0000115668889999999999999999999998764 21 2234578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDK------GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS------GLRP-NLAV 231 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 231 (407)
+..|...|++++|..+|+++.+. ...| ...++..+...|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1112 3667888999999999999999999998864 1122 2458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCC
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK---------LKMDDASYKFMMKALSDGGK------LDEILEIVGGILDDGGIE 296 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 296 (407)
+..++..|...|++++|..+++++... .+.....+..+...+...+. +..+...++..... .+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CH
Confidence 889999999999999999999998872 22233344444444444333 33333333333221 23
Q ss_pred CcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 297 FSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.....+..++.+|.+.|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34457888999999999999999999987654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=110.38 Aligned_cols=214 Identities=12% Similarity=0.098 Sum_probs=154.5
Q ss_pred ChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC-chhhHHHHHHHHHhcCCHH
Q 015416 25 DSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS--VKM-SAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~ 101 (407)
++++|...|++. +..|...|++++|+..|+++....+. .++ ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 366777766655 44677889999999999988764210 111 2568889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-GRFKDAIEVFRKMGEYRCS-PD----TLSFNNLIDQLCKNGML 175 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~ 175 (407)
+|+..|++.++..+..........+++.+..+|... |++++|+..|++.+..... .+ ..++..++..+...|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999998875432111111234788899999996 9999999999998764210 11 35688899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--h
Q 015416 176 AEAEELYGEMSDKGVNPDE------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA------VYNRLVGKLV--Q 241 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~ 241 (407)
++|+..|+++.+....... ..|..++.++...|++++|...|++.++ +.|+.. .+..++..|. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999885432221 1577788899999999999999999986 334322 3445566664 4
Q ss_pred cCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVK 257 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~ 257 (407)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5678888888877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=101.23 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+..+|.+.|++++|+..|++.++..|. +..++..+..+|...|++++|+..|++.++.. |.+..+|..++.+|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 444455555555555555555544332 33444555555555555555555555554443 23344444444444
Q ss_pred HH
Q 015416 170 CK 171 (407)
Q Consensus 170 ~~ 171 (407)
..
T Consensus 133 ~~ 134 (208)
T 3urz_A 133 YL 134 (208)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-11 Score=99.85 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGS----------------LMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 73 (407)
...+-.....+...|++++|+..|++..+. .|.++..|.. ++.+|.+.|++++|+..|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455667788999999999999999986 3346667777 999999999999999999999
Q ss_pred HhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 015416 74 VGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR--FKDAIEVFRKMG 151 (407)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 151 (407)
++.+ |.+...+..+..++...|++++|+..|+++++..|. +..++..+..+|...|+ ...+...+....
T Consensus 81 l~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 81 LQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9987 557889999999999999999999999999998765 67789999998877654 344556666654
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
. ..|....+..+..++...|++++|+..|+++++ ..|+......+
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3 123333455567777788999999999999988 46775544433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-11 Score=98.70 Aligned_cols=190 Identities=9% Similarity=-0.011 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+.+.|++++|+..|+.+.+..|..+.....+..++.++.+.|++++|+..|+++++..|+.+.-..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667788999999999999999999863332222467888999999999999999999999988754222223555
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 89 SVLDALCN------------------NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 89 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
.+..++.. .|++++|+..|+++++..|. +..++..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~------~~~a~~a~~~l~----------~~~~~~ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN------SQYTTDATKRLV----------FLKDRL 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT------CTTHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC------ChhHHHHHHHHH----------HHHHHH
Confidence 56666554 57889999999999887654 222332211110 000000
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
......++..|.+.|++++|+..|+++++. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011234567778888888888888888764 233 2457778888888888888888888777643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=95.59 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC----CHHHH
Q 015416 28 GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG----KFDEA 103 (407)
Q Consensus 28 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A 103 (407)
+|++.|++..+. + ++.++..|...|...+++++|+.+|+++.+.+ +..++..|..+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~--g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA--G---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT--T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 566777777765 4 77788888888888888888888888888765 46677777777776 5 78888
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHH----c
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPD---TLSFNNLIDQLCK----N 172 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~ 172 (407)
+..|++..+.+ +..++..|..+|.. .+++++|+.+|++..+.| ++ ...+..|...|.. .
T Consensus 73 ~~~~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 73 RQLAEKAVEAG--------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCC
Confidence 88888887664 45577778888877 778888888888888765 32 6677778888877 6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV-N-----RVDDGATYFRKMVDSG 224 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 224 (407)
+++++|+..|++..+. ..+...+..+...|... | ++++|..+|+...+.|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7788888888888765 23444666677776543 2 6788888888877765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=119.11 Aligned_cols=131 Identities=12% Similarity=-0.023 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+...+..+..++...|++++|+..|+++.+..+. +..+|..+..+|...|++++|+..|++.++.. +.+...|
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~ 504 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPK 504 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3344444444444455555555555544444322 33344444444555555555555554444433 2234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
..+..+|...|++++ +..|+++++.+ +.+...|..+..++...|++++|...|+++.+
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 444444555555555 44554444421 11234444444555555555555555554444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=97.90 Aligned_cols=141 Identities=9% Similarity=-0.021 Sum_probs=68.2
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
+...|++++|+..+...... .+.++..+..++.+|.+.|++++|++.|+++++.+ |.+..+|..+..+|...|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCc
Confidence 33445555555555544431 22234444455555555555555555555555544 2344555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEV-FRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+++|+..|+++++..+. +..++..+..+|.+.|++++|.+. +++.++.. |.+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555555554433 344555555555555555443332 34444432 233444444444444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-09 Score=92.99 Aligned_cols=236 Identities=9% Similarity=0.025 Sum_probs=174.4
Q ss_pred HcCC-HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH-
Q 015416 59 MKGM-EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY- 134 (407)
Q Consensus 59 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 134 (407)
+.|. .++|+.+++.++..+ |-+..+|+.-..++...+ ++++++..++.++...+. +..+|+.-..++
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~ 114 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIG 114 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHH
Confidence 3444 468888888888877 446777888777788888 889999999988887665 566777666665
Q ss_pred ---Hhc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 135 ---CGQ---GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA--EAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 135 ---~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
... +++++++.+++.+++.. +.+..+|+.-.-++.+.|.++ +++++++++++.+. -+...|+.....+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 555 78889999999888865 567888888888888888888 88888888887643 366777777767666
Q ss_pred cCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhc
Q 015416 207 VNR------VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE-AKSFFDIMVKKL---KMDDASYKFMMKALSDG 276 (407)
Q Consensus 207 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 276 (407)
.+. ++++++.+.+++... +-|...|+.+...+.+.|+... +..+..++.... +.++..+..++.+|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 666 788888888888754 4577788888888888887444 555666655522 55778888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
|+.++|+++++.+.+.. -|.....|...+.
T Consensus 272 ~~~~~A~~~~~~l~~~~-Dpir~~yW~~~~~ 301 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKY-NPIRSNFWDYQIS 301 (306)
T ss_dssp TCHHHHHHHHHHHHHTT-CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ChHHHHHHHHHHh
Confidence 99999999999888642 1444445554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-11 Score=113.08 Aligned_cols=174 Identities=9% Similarity=-0.047 Sum_probs=121.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 95 CNNGKFDEALKLFDRMK--------NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
...|++++|++.|+++. +..+. +...+..+..+|...|++++|+..|+++++.. +.+...|..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE------SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHH
Confidence 56777888888888777 33322 55577777777888888888888887777654 45666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+|...|++++|+..|+++++.. +-+...+..+..+|...|++++ +..|+++++.. +.+...|..++.++...|+++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHH
Confidence 77888888888888888777642 2245667777777777888877 77777777643 335667777777788888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
+|...|+++.+..|.+...+..+..++...++
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888777777555566677777777766544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-09 Score=93.06 Aligned_cols=178 Identities=10% Similarity=0.124 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
|+..|++....+.. +..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.
T Consensus 85 a~~~l~~l~~~~~~------~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQN------SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55666665544311 223345666666777777777777766655441 12445566666677777777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 182 YGEMSDKGVNP-----DEYTYGLLMDAC--FEVN--RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 182 ~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
+++|.+ ..| +..+...++.++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|...+
T Consensus 159 l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 777665 344 244444555442 2223 666777777776543 344223333333666677777777777
Q ss_pred HHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 253 DIMVKK----------LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 253 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+.+. .+.++.++..++......|+ +|.++++++.+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 655542 24456666566655555665 666666666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-11 Score=88.08 Aligned_cols=127 Identities=25% Similarity=0.385 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
|..++..+...|++++|+.+|+++...+ +.+...+..++..+...|++++|...|+++....+. +...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~ 74 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHH
Confidence 3334444444444444444444444332 223333444444444444444444444444433221 2223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
++.++...|++++|.++++++.... +.+...+..++..+...|++++|...++++.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444444444443332 2233334444444444444444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=95.25 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=133.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+..++..+.+.|++++|+..|++++...|..+.....+..++.+|.+.|++++|+..|+++++..+.... -..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHH
Confidence 45567788889999999999999999999876543333567888999999999999999999999988765311 112
Q ss_pred hHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCG------------------QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++..+..++.. .|++++|+..|+++++.. |.+...+....... .+...+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--
Confidence 45555555554 456666666666666543 22222222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-L---AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
......+...|.+.|++++|...|+++++. .|+ . ..+..++.+|.+.|++++|...++.+....|.+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011235678899999999999999999975 333 2 478889999999999999999999888744433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-10 Score=85.44 Aligned_cols=128 Identities=19% Similarity=0.248 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
|..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555555555555555554432 2234444455555555555555555555555432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.|++++|..+++.+....+.+..++..++.++...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555544444444555555555555555555555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=94.52 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
|+.++...|++++|+..++...... +.+...+..+..+|.+.|++++|++.|+++++..+. +..+|..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 3444455566666666666665543 334445556666666666666666666666665543 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL-YGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
+|...|++++|+..|++.++.. |.+...|..++..|.+.|++++|... ++++++.. +-++.+|......+...|
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666654 33455666666666666666554443 35555531 123444554444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-10 Score=91.07 Aligned_cols=173 Identities=12% Similarity=0.014 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC----CHH
Q 015416 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG----RFK 141 (407)
Q Consensus 66 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 141 (407)
|+++|+++.+.+ +..++..+...|...+++++|+..|++..+.+ ++.++..|..+|.. + +++
T Consensus 5 A~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 5 PGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp TTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred HHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 455555555544 44555555666666666666666666665543 33355555555555 4 566
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCChHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFE----VNRVDD 212 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~ 212 (407)
+|+.+|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. ..+..+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666655533 44555555555554 45555555555555553311 013444455555554 445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQV-G-----MLDEAKSFFDIMVK 257 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 257 (407)
|..+|++..+. ..+...+..|...|... | ++++|..+|++..+
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55555555543 12233444444444432 1 45555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-09 Score=90.52 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=190.6
Q ss_pred HHHHhcCCh-hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 18 LGFVRDGDS-DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG--MEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 18 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
.+..+.|.+ ++|+.+++.++.. .|-+..+|+.-..++...| ++++++.+++.++..+ |.+..+|+.-..++
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHH
Confidence 333455555 6899999999996 3447778999999999989 9999999999999987 44666776655555
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 95 ----CNN---GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK--DAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 95 ----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
... +++++++.+++.+.+..+. +..+|+.-..++.+.|.++ ++++.++++++.. +.|...|+..
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R 186 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHR 186 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555 7899999999999998766 7788998888999999988 9999999999876 5688889888
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHH
Q 015416 166 IDQLCKNGM------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD-GATYFRKMVDSG--LRPNLAVYNRLV 236 (407)
Q Consensus 166 ~~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~ 236 (407)
...+...+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 888877776 899999999998864 3478888888888888888444 556777666432 134778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMM 270 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 270 (407)
..|.+.|+.++|.++++.+.+. .|.....|...+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999999999999873 454555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=91.86 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=153.2
Q ss_pred HHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHH
Q 015416 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE 145 (407)
Q Consensus 66 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 145 (407)
|+..|++.+..+ +++..++..++.++...|++++|++++.+.+..++.+. +...+..++.++.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~----~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG----TTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC----cHHHHHHHHHHHHHCCCHHHHHH
Confidence 677788777654 44556667888999999999999999999987765222 67788899999999999999999
Q ss_pred HHHHHhhCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 146 VFRKMGEYRCSP-----DTLSFNNLIDQL--CKNG--MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 146 ~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 99999875 36 245556666663 3334 899999999999764 45533444455589999999999999
Q ss_pred HHHHHHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 217 FRKMVDS-----GL----RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 217 ~~~~~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
++.+.+. .. +.+..+...++......|+ +|.+++.++.+..|.++.+.. +.+....|+
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd 300 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFD 300 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHH
Confidence 9976642 00 3355677677767667787 889999999997777766543 566677777
Q ss_pred HHHhcC
Q 015416 288 GILDDG 293 (407)
Q Consensus 288 ~~~~~~ 293 (407)
++..++
T Consensus 301 ~~~~ky 306 (310)
T 3mv2_B 301 ELVRKY 306 (310)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 777664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-08 Score=94.84 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=102.8
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCc
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---EEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~ 83 (407)
+-|..+|..++..+.+.++++.+..+|+.+... .|.+...|...+..-.+.++ ++.+..+|++++...+. +|+
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~-~~s 138 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG-NND 138 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSC-CCC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCC-CCC
Confidence 347888999999999999999999999999996 66688899999999999999 99999999999986521 478
Q ss_pred hhhHHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CCCccccccchHHHHHHHHH---------hcCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKF--------DEALKLFDRMKNE-HN-PPKRLAVNLGSFNVMADGYC---------GQGRFKDAI 144 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~ 144 (407)
...|...+....+.++. +...++|+.++.. |. .+. +...|...+.... ..++++.+.
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~----s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPK----SIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSS----CHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccccc----chHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 88998888766555543 3345788776643 33 332 3346777666543 234567788
Q ss_pred HHHHHHhh
Q 015416 145 EVFRKMGE 152 (407)
Q Consensus 145 ~~~~~~~~ 152 (407)
.+|++.+.
T Consensus 215 ~iy~raL~ 222 (679)
T 4e6h_A 215 KLYKTLLC 222 (679)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=98.42 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=102.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+...+..+...+...|++++|...|+++.+..+. +..++..+..++.+.|++++|...++++.... |+....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 187 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHH
Confidence 4455566666667777777777777777666544 45566667777777777777777777666543 443322
Q ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 015416 163 NN-LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---LAVYNRLVGK 238 (407)
Q Consensus 163 ~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 238 (407)
.. ....+...++.+.|+..|+++.... +.+...+..+...+...|++++|...|.++++.. |+ ...+..++..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHH
Confidence 22 2223555566666777777666542 3346666667777777777777777777776632 32 4466777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 015416 239 LVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~ 256 (407)
|...|+.++|...|++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 777777777776666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-08 Score=96.07 Aligned_cols=206 Identities=14% Similarity=0.041 Sum_probs=151.1
Q ss_pred chHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC-
Q 015416 125 GSFNVMADGYCGQGRFKDAI-EVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG---------VNPD- 193 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~p~- 193 (407)
..|...+..+...|+.++|. ++|++.... +|.+...|...+...-..|+++.|..+|++++... -.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 34555566666778888886 889888764 45666677788888888999999999999887531 0132
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 015416 194 -----------EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-MLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 194 -----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 261 (407)
...|...+....+.|..+.|..+|.++.+.-.......|...+....+.+ +.+.|.++|+..++..+.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 23577777777888899999999999987511223344544444444444 589999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGI-EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+...+...+......|+.+.|..+|++++....- .-....|...+..-.+.|+.+.+.++.+++.+.-+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888889999999999999886310 013457778888788889999999999998865544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-10 Score=97.77 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HH
Q 015416 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVY-NR 234 (407)
Q Consensus 156 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ 234 (407)
+.+...+..+...+...|++++|+..|+++.+.. +-+...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4566778888999999999999999999998753 335788999999999999999999999999874 4555433 33
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
....+...++.+.|...+++.....|.+...+..+...+...|++++|+..|.+++....-..+...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 34447778888999999999999888899999999999999999999999999999974222236789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKER 327 (407)
Q Consensus 315 ~~~A~~~~~~~~~ 327 (407)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999998887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-10 Score=100.26 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=118.9
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++++|.+++++..+.. +... +...++++.|...|.++ +.+|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~---~~~~---------~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL---KTSF---------MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCCS---------SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHc---cccc---------cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHH
Confidence 456667777777766641 1110 11136666666666554 334566677777
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 182 (407)
|...|.++.+.............+|+.+..+|...|++++|+..|++.+... ...|+...
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~----- 114 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---------------VENGTPDT----- 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------HTTTCHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HHcCCHHH-----
Confidence 7777776655321110000012345555555555555555555555543310 00000000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 183 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++..+..+|.. |++++|+..|++.++. +..+ ...++..++..|...|++++|+..|++...
T Consensus 115 ----------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 115 ----------AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp ----------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02334444555544 5555555555554431 1000 123566677777777777777777777666
Q ss_pred c---CCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHhhcCcHHHHHH
Q 015416 258 K---LKM--D-DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE---ELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 258 ~---~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 320 (407)
. ... . ...+..++.++...|++++|+..|++.+ ...-.+.. .....++.++ ..|+.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1 111 1 2255666666777778888888777777 43111111 1233344444 5666666655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=91.54 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
+..++..+...|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++....+ . ...+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~------~~~~~~ 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D------NSYKSL 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C------hHHHHH
Confidence 3444444445555555555555544433 22344444455555555555555555544443322 0 001111
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 015416 130 MADG-YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEV 207 (407)
Q Consensus 130 l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 207 (407)
+... +...++...|+..|++..... |.+...+..+..++...|++++|...|+++++....+ +...+..++.++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 1101 111112223344444444432 2234444445555555555555555555544432111 123444444455555
Q ss_pred CChHHHHHHHHHH
Q 015416 208 NRVDDGATYFRKM 220 (407)
Q Consensus 208 g~~~~a~~~~~~~ 220 (407)
|+.++|...|++.
T Consensus 158 g~~~~A~~~y~~a 170 (176)
T 2r5s_A 158 GQGNAIASKYRRQ 170 (176)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 5555555444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-10 Score=108.15 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=118.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++++|+..|++..+. .+.+...|..++..+...|++++|+..|+++++.+ +.+...+..+..+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHH
Confidence 47889999999998875 34467889999999999999999999999999876 4567889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN---GMLAEAE 179 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~ 179 (407)
|.+.|++..+..+. +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.
T Consensus 76 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 76 AAVLLQQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999987654 66788899999999999999999999998865 45677888899999999 9999999
Q ss_pred HHHHHHHhCC
Q 015416 180 ELYGEMSDKG 189 (407)
Q Consensus 180 ~~~~~~~~~~ 189 (407)
..++++.+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=91.28 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
.+..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 44455555666666666666666655443 33455555666666666666666666665544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-09 Score=102.86 Aligned_cols=154 Identities=13% Similarity=0.034 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.|++++|+..|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776654 3456677777777777888888888888777642 23466777777778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG---GKLDEILEIVGGILDDG 293 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 293 (407)
|++..+.. +.+...+..++.+|...|++++|...|++..+..+.+...+..+..++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88777643 335667777888888888888888888888776666777778888888887 88888888888877763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=94.99 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=111.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C-CCC--HHHHHHHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSG--L-RPN--LAVYNRLV 236 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~ 236 (407)
..|...|++++|...|.++.+. +-.+ -..+|..+..+|...|++++|+..|++.++.- . .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666555431 1000 13466677777777888888888887766421 0 111 34788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCc-HHHHHHHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKM------DDASYKFMMKALSDGGKLDEILEIVGGILDDG---GIEFS-EELQEFVK 306 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~ 306 (407)
..|.. |++++|+..|++.....+. ...++..+..+|...|++++|+..|++++... +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99988 9999999999999872221 14678899999999999999999999998742 11111 23666777
Q ss_pred HHHhhcCcHHHHHHHHHHHH
Q 015416 307 GELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++...|++++|...+++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 88888999999999999976
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=91.33 Aligned_cols=196 Identities=10% Similarity=-0.053 Sum_probs=118.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc--------
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSV-------LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN-------- 123 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 123 (407)
..+++..|.+.|.++...+ |.....|..+ ..++...++..+++..++......+..-....+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788999999999999887 4457788777 566666666666666666655432211111111
Q ss_pred -------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--H
Q 015416 124 -------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD--E 194 (407)
Q Consensus 124 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~ 194 (407)
......+..++...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123445666777777777777777776643 433355556666777777777777776554321 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
..+..+..++...|++++|+..|++.......|. .......+.++.+.|+.++|..+|+++....|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2455666666667777777777776664322132 23555566666666666666666666666433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-08 Score=85.26 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-C
Q 015416 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-G 138 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 138 (407)
+..++|++++++++..+ +-+..+|+.-..++...| .+++++..++.++...++ +..+|+.-..++.+. +
T Consensus 68 e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcC
Confidence 34455666666666655 334555555555555555 366666666666655444 444555555555554 4
Q ss_pred -CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 139 -RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA--------EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 139 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
++++++++++++++.. +.+..+|+...-++.+.|.++ ++++.++++++.. .-+...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 5566666666666544 345555555444444444444 5566666665543 2245555555555555444
Q ss_pred -------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC---
Q 015416 210 -------VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML--------------------DEAKSFFDIMVKKL--- 259 (407)
Q Consensus 210 -------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~--- 259 (407)
++++++.+.+++... +-|...|+.+-..+.+.|+. .........+....
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 455666666655532 33455555555555554442 11111111111111
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 260 ---KMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 260 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 345566666666666667777777777766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.5e-10 Score=81.47 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+...+..|.+.|++++|+..|+++++.+ |.+..+|..+..+|.+.|++++|+..|+++++..+. +..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 85 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHH
Confidence 34444444444555555555555444443 223444444444444445555555554444444322 333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.++.+|...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-09 Score=77.70 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+...+..|.+.|++++|++.|++.++.. +.+..+|..++.+|...|++++|+..|++.++..|.+...|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345556666666666666666666666542 3345566666666666666666666666666655556666666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
..|++++|++.|+++++.+ |-+...+..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD--PSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHH
Confidence 6666666666666666653 344444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-07 Score=81.65 Aligned_cols=169 Identities=16% Similarity=0.070 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGL---RPN--L 229 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 229 (407)
..+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778889999999999988876432211 12344466667788899999999998875321 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C-CCCc
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMD----DASYKFMMKALSDGGKLDEILEIVGGILDDG---G-IEFS 298 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~ 298 (407)
.+++.++..|...|++++|...|+++.. ..+.+ ..++..++.+|...|++++|+..+++++... + ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4888899999999999999999999884 33332 2588889999999999999999999887641 1 1112
Q ss_pred HHHHHHHHHHHhhcCcHHHH-HHHHHHHHHh
Q 015416 299 EELQEFVKGELSKEGREEEV-VKLMEKKERE 328 (407)
Q Consensus 299 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 328 (407)
...+..++.+|.+.|++++| ...+++....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788889999999999999 7777776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.1e-09 Score=80.28 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|...+++.....+.+..++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666777777778888888887777643 3456777788888888888888888888888766777788888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH--HHHHhhcCcHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFV--KGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 326 (407)
..|++++|+..|+++.... +.+...+..+ +..+.+.|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888763 3344444333 333667788888887777654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.3e-09 Score=78.79 Aligned_cols=98 Identities=7% Similarity=-0.059 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
..+..++..+.+.|++++|...|+++....|.++..|..++.+|...|++++|+..|++++... |.++..+..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence 3566666666666677777777766666666666666666666666677777777776666653 44455666666666
Q ss_pred hhcCcHHHHHHHHHHHHHhh
Q 015416 310 SKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66777777776666666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-08 Score=81.38 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+..+...+...|++++|+..|++.. .|+...|..++.+|...|++++|+..|++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555542 2445555555555555555555555555555432 2234445555555555
Q ss_pred cCChHHHHHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMVD 222 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~ 222 (407)
.|++++|...|+++.+
T Consensus 84 ~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI 99 (213)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 5555555555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-07 Score=82.09 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=176.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
...+.+..++|++++++++...+. +..+|+.-..++...| .+++++.+++.++... +-+..+|+.-..++..
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 334455567899999999998766 6678888888888888 5999999999999876 5677889888888877
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 172 N-G-MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD--------DGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 172 ~-g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
. + ++++++.+++++++.. +-+..+|+.-.-++.+.|.++ ++++.++++++.. +-|..+|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 7 7 8999999999999864 336777777666666666666 8999999999865 4588899999888888
Q ss_pred cCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-
Q 015416 242 VGM-------LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKL--------------------DEILEIVGGILDDG- 293 (407)
Q Consensus 242 ~g~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~- 293 (407)
.++ ++++++.+.+++...|.|...|+.+-..+.+.|+. .........+....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 876 78999999999998888999999888888777654 23333333333321
Q ss_pred ---CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 294 ---GIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 294 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.-.+++.....+++.|...|+.++|.++++.+..+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11467778899999999999999999999998643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-09 Score=83.82 Aligned_cols=125 Identities=8% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+..++..+...|++++|+..|+++. .|+...+..+..+|...|++++|...|++..+.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555442 3345555555555555555555555555555432 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDD----------------ASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.|++++|...|+++....+.+. .++..++.+|...|++++|+..|+++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555555333333 4455555555555555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-09 Score=80.85 Aligned_cols=103 Identities=13% Similarity=-0.059 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+.+.|++++|+..|++++..+ |.+...|..+..+|...|++++|+..|+++.+..|. ++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------~~~ 105 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------CCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------CcH
Confidence 44567777777777788888888887777766 446677777777777778888888888777776654 556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
.|..+..+|...|++++|+..|++.++.. |+.
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 77777777777777777777777777653 444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-10 Score=94.45 Aligned_cols=193 Identities=9% Similarity=-0.007 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+..++..+...|++++|+..|+++++..+. +...+..+..+|.+.|++++|+..+++.++.. +.+...+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 76 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344445555555555555555555555554332 34455555555555555555555555555543 33445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
.++.+|...|++++|+..|+++.+.. |+. ..+...+....+ ..+... +........+.+......+... ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 55555666666666666555554321 110 000001111110 001111 1112222223333333333222 24
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG-GKLDEILEIVGGILD 291 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 291 (407)
|++++|.+.++...+..+.+......+...+.+. +.+++|.++|.++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6666666666666654444444444444444443 556677777766654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-09 Score=80.68 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..|..++..+...|++++|+..|++++... +.+..++..++.++...|++++|...|++..+..+. +..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~ 84 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHH
Confidence 345556666666666666666666666554 334555666666666666666666666666655432 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL--IDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 185 (407)
..++.++...|++++|...|++..... +.+...+..+ +..+...|++++|+..+...
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666666666665543 2333333222 22245556666666665544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=91.86 Aligned_cols=194 Identities=10% Similarity=-0.031 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+.+.|++++|+..|+..... .+.+...|..++.+|...|++++|+..|+++++.+ +.+...+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4566777777888888888888888888775 33467777888888888888888888888888765 44667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.+|...|++++|...|+++.+..+.. ...+...+....+. .++... ........+.+......+...
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQ------RLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH
Confidence 78888888888888888888777654321 11111111111111 111111 112222233444444333332
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEV-NRVDDGATYFRKMVD 222 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 222 (407)
..|++++|++.++.+.+. .|+. .....+...+... +.++++.++|..+.+
T Consensus 147 --~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 --IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 256777777777766653 3443 2223333333333 456667777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-08 Score=85.14 Aligned_cols=162 Identities=11% Similarity=-0.008 Sum_probs=90.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRC-SPDT----LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PD----EYTYGL 199 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 199 (407)
.+..+...|++++|..++++...... .|+. ..+..++..+...|++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566667777777777777665321 1111 12233555555666777777777777653211 12 224666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVD----S-GLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKM-DDASYK 267 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~ 267 (407)
++.+|...|++++|..+|+++++ . +..+. ..++..++..|...|++++|..++++... +..+ -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66667777777777777666652 1 11111 12556666666666666666666666655 1111 145566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 015416 268 FMMKALSDGGK-LDEILEIVGGILD 291 (407)
Q Consensus 268 ~l~~~~~~~g~-~~~A~~~~~~~~~ 291 (407)
.++.+|...|+ +++|+..|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666663 4666666665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-08 Score=86.00 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=91.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSA----VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+..+...|++++|..++++.....+. .|+. ..+..++..+...+++++|+..|+++...............+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 355666777777777777777764321 2221 12233555566666777777777777764332211100122566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGE----Y-RCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDK----GVNPD-EYTY 197 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 197 (407)
.++.+|...|++++|+..|+++++ . +..+. ..++..++.+|...|++++|+..+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 677777777777777777766652 1 11111 125566666666666666666666665431 11111 3455
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHH
Q 015416 198 GLLMDACFEVNR-VDDGATYFRKMV 221 (407)
Q Consensus 198 ~~l~~~~~~~g~-~~~a~~~~~~~~ 221 (407)
..+..+|...|+ +++|...|+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555655553 355655555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=87.21 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC---SPD--TL 160 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 160 (407)
.+...+..+...|++++|.+.+.+..+..............+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666667777777776666654322110000111233344455555666666666655543211 011 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-H
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRPN-L 229 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~ 229 (407)
+|+.++..|...|++++|+.+|+++.+. ...|+ ..++..++.+|...|++++|..++++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555555566666666555555421 00111 134444555555555555555555544421 00000 2
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEA-KSFFDIM 255 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 255 (407)
.+|..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444444444444554444 3434443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=83.36 Aligned_cols=197 Identities=9% Similarity=-0.063 Sum_probs=141.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM-------ADGYCGQGRFKDAIEVFRKMGEYRCSPD---------- 158 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------- 158 (407)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC
Confidence 579999999999999998765 56677777 56666666666666666655442 121
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 159 ------------TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 159 ------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 123445667788889999999999888764 3544366667778888899999999998665521 1
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 227 PN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK-M--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 227 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
|. ..++..++.++...|++++|+..|++...+.. | ..........++.+.|+.++|..+|+++... .|+...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~---~P~~~~ 243 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT---HPEPKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHH
Confidence 11 23677888888889999999999988876432 3 3457778888888889999999999888886 344445
Q ss_pred HHHHH
Q 015416 302 QEFVK 306 (407)
Q Consensus 302 ~~~l~ 306 (407)
...|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=9.8e-07 Score=81.35 Aligned_cols=298 Identities=9% Similarity=-0.058 Sum_probs=138.6
Q ss_pred cCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 8 ADPVVYSYLMLGFVRDGD-SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYF----MKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
|+...|...+....+.++ .+....+|+......+..+++...|...+..+. ..++.+.+..+|++++... ...
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~~ 122 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MGS 122 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CTT
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hhh
Confidence 566666666666655553 345566666666542222334455555555433 2345666667777766521 111
Q ss_pred chhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC--C-----HHH
Q 015416 83 SAVANNSVLDALC-------------NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG--R-----FKD 142 (407)
Q Consensus 83 ~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~ 142 (407)
-...|......-. ..+.+..|..+++.+...-... +...|...+..-...+ - .+.
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----SVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 1112221111100 0011222233333222110000 1123333333322111 0 234
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 143 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..+|++++... +.+...|...+..+.+.|+.+.|..+|+++... |....... .|....+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 566777777643 556677777777777888888888888888765 33222111 12221111111 222211
Q ss_pred CC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 015416 223 SG---------LRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG-KLDEILEIVGGI 289 (407)
Q Consensus 223 ~~---------~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 289 (407)
.- ..+ ...+|...+..+.+.+..+.|..+|+++ ...+.+...|...+..-...+ +.+.|..+|+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00 000 1134555555555566677777777766 311123334433332222222 467777777776
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
++.. +-++..+...++...+.|+.+.|..+++++
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6653 223344444555556666666666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8.5e-10 Score=96.83 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=95.7
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC------------chhhHHHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM------------SAVANNSVL 91 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~ 91 (407)
+++++|+..|+..... .+.+...|..++..+.+.|++++|+..|++++...|.... ...+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4555666666554442 1225667888888888888899998888888876632100 035666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
.+|.+.|++++|+..|+++++..+. +..++..+..+|...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 6666667777777777666665433 45566666666666666666666666666653 3445566666666666
Q ss_pred cCCHHHH-HHHHHHH
Q 015416 172 NGMLAEA-EELYGEM 185 (407)
Q Consensus 172 ~g~~~~a-~~~~~~~ 185 (407)
.|+++++ ..+|+.|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6666665 2344444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-09 Score=76.74 Aligned_cols=121 Identities=12% Similarity=-0.006 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|+..++++.... +.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHH
Confidence 34566777788888888888888888888875 34467778888888888888888888888888765 4456777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF 140 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 140 (407)
..++.++...|++++|...|+++.+..+. +...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHHhcC
Confidence 78888888888888888888888776543 445667777777766654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-08 Score=72.33 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|..+++++.+.. +.+..++..++..+...|++++|..+++++....+.+..++..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344555555555555555555555555432 2344555556666666666666666666665544555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|++++|...|+++.... +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 6666666666666665542 333444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=76.37 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=89.2
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...|..+...+.+.|++++|+..|++..+. .+.+..++..++.++...|++++|+..|++++... +.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHH
Confidence 445666777888888888888888888888774 34467778888888888888888888888888765 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
+..+..++...|++++|...|++..+..+. +...+..+..++...|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS------CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG------GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhc
Confidence 778888888888888888888888776533 4456666666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.3e-09 Score=76.77 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+...|++++|+..|+++.... +.+...+..++.++...|++++|...+.+..+..+. +..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHH
Confidence 44556666666777777777777777766654 334556666666666777777777777766665432 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
.+..++.+|...|++++|...|++..... +.+...+..+..++...|+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 56666666666666666666666666543 3345555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-08 Score=74.99 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|...|+++.+.. +.+..++..++..|...|++++|...++++....+.+...+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555556666666666666666655432 224555666666666666666666666666665555566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcC
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEG 313 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 313 (407)
...|++++|+..|+++.... +.+...+..+..++.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 66666666666666666542 333444555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=74.20 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+...|++++|.++|+++.+. .+.+..++..++.++...|++++|+.+|+++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHH
Confidence 466777888888888888888888888875 34466778888888888888888888888888765 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+..++...|++++|...|+++.+..+. +...+..+..++..
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPN------NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHh
Confidence 888888888888888888888876543 44455555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.9e-07 Score=76.23 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=99.1
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 59 MKGMEE-EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK----------FDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 59 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
+.|.++ +|+.+++.++..+ |.+..+|+.-..++...+. +++++.+++.+....+. +..+|
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW 111 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTW 111 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHH
Confidence 445554 6788888888776 3345556554444433332 56777777777776554 56677
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 128 NVMADGYCGQG--RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM-LAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 128 ~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+.-..++.+.| .+++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.+.++++.. +-+...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 77666666666 3677777777777765 4566777776666666676 467777777777653 23555666555554
Q ss_pred Hhc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015416 205 FEV--------------NRVDDGATYFRKMVDSGLRPNLAVYNRL 235 (407)
Q Consensus 205 ~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (407)
... +.++++++.+...+... +-|..+|+-+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 443 23445555555555432 2244444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.2e-09 Score=79.46 Aligned_cols=98 Identities=11% Similarity=-0.076 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|...|+++....|.++..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456666777777777777777777777643 345667777777777777777777777777776666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 015416 274 SDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|+..|+++++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-09 Score=82.51 Aligned_cols=122 Identities=10% Similarity=0.169 Sum_probs=83.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH-HHhcCC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA-LCNNGK 99 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 99 (407)
...|++++|+..++..... .+.+...|..++.+|...|++++|+..|++++..+ +.+...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCC
Confidence 3456777777777777775 34466777777777777788888888887777765 3356666677776 667777
Q ss_pred H--HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 100 F--DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 100 ~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
+ ++|...|+++.+..+. +..++..+..+|...|++++|...|+++....
T Consensus 95 ~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7 7777777777776543 45566777777777777777777777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-08 Score=85.65 Aligned_cols=131 Identities=9% Similarity=-0.076 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP--------------NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
..+..+...|...|++++|...|+++++..... ...+|..++.+|...|++++|+..|++++...|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445555555555555555555555422111 146888899999999999999999999999778
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHH-HHHHHHHHH
Q 015416 261 MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV-VKLMEKKER 327 (407)
Q Consensus 261 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 327 (407)
.+..++..++.+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| ...+++|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999874 56677888899999999999988 456666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-09 Score=84.22 Aligned_cols=163 Identities=15% Similarity=0.016 Sum_probs=97.7
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCCchhhHHHHHHHHHhc
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS---SVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 97 (407)
...|++++|.++++.+.. .......++..+...+...|++++|+..|++++.... ..+....++..+..++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 456888888885555533 1223566778888888888888888888888775210 0133455677777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-ccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPK-RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCK 171 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~ 171 (407)
|++++|...+++..+...... .......++..+..++...|++++|...+++...... ..+ ..++..+..++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 888888888877665411000 0000234566677777777777777777766643210 011 1234556666666
Q ss_pred cCCHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMS 186 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~ 186 (407)
.|++++|...+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 677777766666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-09 Score=80.60 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..+..+...+...|++++|+..|+++....+. +...|..+..+|...|++++|+..|++.+... |.+...+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 94 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 33444444444444444444444444443322 33344444444444444444444444444432 223344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
++.+|...|++++|...|++.+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.8e-09 Score=82.34 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH-HHh
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG-YCG 136 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 136 (407)
...|++++|+..|++++... +.+...|..++.+|...|++++|...|+++.+..+. +...+..+..+ |..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQ 91 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHh
Confidence 45688888999998888876 456788888888999999999999999988877544 55577778888 778
Q ss_pred cCCH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 137 QGRF--KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 137 ~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
.|++ ++|...|++..... +.+...+..++.+|...|++++|...|+++.+.
T Consensus 92 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888 99999998888765 456778888888888999999999999988874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.1e-09 Score=83.01 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
...|++++|.++++.+.. + ......++..+..++...|++++|...+++..+.............++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 356777777775544433 2 1234566677777777777777777777776652111110111334556666666666
Q ss_pred CCHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 015416 138 GRFKDAIEVFRKMGEY--RCSPD----TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFE 206 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~ 206 (407)
|++++|...+++.... ..+.+ ...+..+...+...|++++|...+++...... ..+ ..++..+..++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 6666666666655432 00111 22355555566666666666666655542100 001 1223444445555
Q ss_pred cCChHHHHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMV 221 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~ 221 (407)
.|++++|...+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 555555555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=86.95 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=78.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--c-----------
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--S----------- 83 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~----------- 83 (407)
+......|+++++.+.++.-... .......+..++..+...|++++|+..|++++...+..+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33444556666666666543332 2224556777888888888888888888888876532110 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
..++..+..+|...|++++|+..++++++..+. +..++..+..+|...|++++|+..|++..... +.+...+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 160 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 144555555555666666666666655554332 34455555555555556666655555555443 23444455
Q ss_pred HHHHHHHHcCCHHHHH
Q 015416 164 NLIDQLCKNGMLAEAE 179 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~ 179 (407)
.+..++...++..++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-06 Score=75.86 Aligned_cols=182 Identities=10% Similarity=-0.032 Sum_probs=137.2
Q ss_pred HHHHHHHHH---HHhcCChh-hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHhC
Q 015416 11 VVYSYLMLG---FVRDGDSD-GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM----------EEEAMECYNEAVGE 76 (407)
Q Consensus 11 ~~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~ 76 (407)
..|..+... ..+.|.+. +|+.+++.+... .|-+..+|+.-..++...+. +++++.+++.++..
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 344444443 34567765 799999999985 34466778776666555444 68999999999988
Q ss_pred CCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-HHHHHHHHHHHhhC
Q 015416 77 NSSVKMSAVANNSVLDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-FKDAIEVFRKMGEY 153 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 153 (407)
+ |.+..+|+.-..++...+ .+++++.+++.+.+..+. +..+|+.-..++...|. ++++++.+.+++..
T Consensus 104 ~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 104 N---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp C---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 7 557888888877788888 489999999999998766 77788888888888898 59999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 154 RCSPDTLSFNNLIDQLCKN--------------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
. +.|...|+.....+... +.++++++.+..++... +-|...|+-+-..+.+
T Consensus 175 ~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 56888888887777665 45788999999988743 3356666544444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-08 Score=72.23 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+.+.|++++|+..|++..+. .|.+...|..++.++...|++++|+..|++++..+ +.+...|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 3456778888899999999999999999886 34577889999999999999999999999999877 44678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
.+..++...|++++|...|+++.+..
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 89999999999999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.9e-08 Score=75.04 Aligned_cols=98 Identities=7% Similarity=-0.038 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|+..|++.++.. +.+...|..++.+|...|++++|+..|++.+...+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455556666666666666666666666532 235556666666666666666666666666665555666666666677
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 015416 274 SDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|+..|++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777666665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-07 Score=69.70 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+..+...+...|++++|...|++.++.. +.+...|..++.+|...|++++|+..|++.....|.+...+..++.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 22344555555555555555555555555555444455555555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 015416 276 GGKLDEILEIVGGILD 291 (407)
Q Consensus 276 ~g~~~~A~~~~~~~~~ 291 (407)
.|++++|+..|++++.
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-08 Score=73.66 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|...|+++....|.++..+..++.+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555566666666667766666666542 3355566666666777777777777777766655666666666777777
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 015416 275 DGGKLDEILEIVGGILDD 292 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~ 292 (407)
..|++++|+..|++++..
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.8e-07 Score=80.49 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDK--GV--NPD-EYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..++++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444444555555555555554444321 00 111 2334444445555555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-07 Score=67.30 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..++..+...|++++|...|++..... +.+...+..++..+...|++++|...+++.....+.+...+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555555666666666666666665532 2345566666666666666666666666666655555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 015416 275 DGGKLDEILEIVGGILDD 292 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~ 292 (407)
..|++++|...|+++...
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.1e-07 Score=82.09 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=141.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc-----------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN-----------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD 158 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 158 (407)
...+.+.|++++|++.|..+.+..+........ ..++..++..|...|++++|.+++..+....- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445566677777777777776654433211100 11467789999999999999999988765210 112
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 015416 159 T----LSFNNLIDQLCKNGMLAEAEELYGEMSD----KGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDS--GL-- 225 (407)
Q Consensus 159 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 225 (407)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..++..|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344445555567899999999988754 232333 567888999999999999999999988742 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 226 RP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMD----DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 226 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+ ...++..++..|...|++++|..++++... ..+.+ ...+..++..+...|++++|...|.++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 244888999999999999999999998877 22222 34567777888899999999998887765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=68.60 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|...|+..... .+.+...+..++.++...|++++|...++++.... +.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHH
Confidence 4566777888888899999999999988885 34467788888888888999999999999888876 44677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
.++.++...|++++|...|++..+..+.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 8888888899999999999888876543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-08 Score=72.14 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-ccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL-AVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 125 (407)
..++..++..+.+.|++++|+..|+++++.+ |.+..+|..+..+|...|++++|+..|++.++..+..... ..-..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456677778888888888888888887766 4466777778888888888888888888777654321100 00112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+|..+..++...|++++|++.|++.+.. .|+....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 4555666666777777777777766653 2554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-08 Score=72.20 Aligned_cols=101 Identities=12% Similarity=-0.048 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+...+..++..+...|++++|...|+++....|.+...|..++.+|...|++++|+..|++++... |.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 344777888999999999999999999999888899999999999999999999999999999974 667778889999
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhH
Q 015416 308 ELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
+|...|++++|...+++.....+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999876554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=4.5e-06 Score=76.92 Aligned_cols=294 Identities=8% Similarity=-0.015 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
.+|...+..+-. |+++.+..+|+..... .|+...|...+....+.+. .+....+|+.++..-..-+.+...|..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~----~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK----SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 456666666654 8899999999999874 3699999999988888774 466778888887641111446778888
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH-------------hcCCHHHHHHHHHHHhh
Q 015416 90 VLDALC----NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC-------------GQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 90 l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~ 152 (407)
.+..+. ..++.+.+.++|++++.. | +.. -...|......-. ..+.+..|..+++.+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P-~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-P-MGS---LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-C-CTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-h-hhh---HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 887654 246788999999999873 2 111 1112222211110 11223334444444432
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015416 153 YRCSPDTLSFNNLIDQLCKNG--M-----LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 225 (407)
.--..+...|...+..-...+ - ...+..+|++++.. .+.+...|...+..+...|+++.|..+|++....
T Consensus 166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 100123445655554432221 1 34567899998875 3556788888888899999999999999999986
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL-------------KMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+...|.. |......++. ++.+.+.. +.....|...+..+.+.+..+.|..+|.++ ..
T Consensus 243 P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 334333332 2222111221 22222210 112356777778777888899999999999 42
Q ss_pred CCCCCcHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Q 015416 293 GGIEFSEELQEFVKGELSKEG-REEEVVKLMEKKER 327 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 327 (407)
. +.+...|...+..-.+.| +.+.|..+++...+
T Consensus 315 ~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 315 E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1 234555654454444444 69999999998875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-08 Score=70.74 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----HHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMD----DASYKF 268 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~ 268 (407)
.+..++..+.+.|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..+++.++. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555432 223445555555555555555555555555541 1111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 269 MMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++.++...|++++|++.|++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556666666666666666666553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-08 Score=77.64 Aligned_cols=131 Identities=12% Similarity=-0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc----------------chHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG----------------VVYGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
...+..+...+...|++++|+..|++..+.. +.+. .+|..++.+|...|++++|+..|+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457778889999999999999999999852 2233 78899999999999999999999999
Q ss_pred HhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 015416 74 VGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI-EVFRKMGE 152 (407)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 152 (407)
+... +.+..++..+..+|...|++++|...|++..+..+. +..++..+..++...++..++. ..|..+..
T Consensus 115 l~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 115 LKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN------NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHhC---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9986 557888999999999999999999999999988654 5667888888888887777766 45555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=73.76 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=83.1
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...|..+...+.+.|++++|+..|++..+. .+.+...|..++.+|...|++++|+..|++++..+ +.+...|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHH
Confidence 35566788888888888888888888888886 34477788888888888888888888888888876 4467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
..+..+|...|++++|...|+++++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888877544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-07 Score=69.03 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
...+..+...+...|++++|...|++..+. .|+ ...+..++.+|...|++++|...+++.....+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344445555555555555555555555542 233 34555566666666666666666666665445555666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 015416 270 MKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++...|++++|+..|++++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-07 Score=70.34 Aligned_cols=99 Identities=7% Similarity=-0.028 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKA 272 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 272 (407)
+...+..+...+...|++++|...|.+++... +.+...+..++.++...|++++|...+++.....|.+...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34555556666666666666666666665532 23455666666666666666666666666666555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 015416 273 LSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~~~ 292 (407)
|...|++++|+..|++++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=69.04 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
+.+...+..++..+...|++++|...|+......+.+...+..++.++...|++++|+..|++++... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 34678999999999999999999999999999888889999999999999999999999999999974 5677889999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 306 KGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 306 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+.+|...|++++|...+++.....+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998876544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-07 Score=69.91 Aligned_cols=110 Identities=7% Similarity=0.120 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD-------DASYK 267 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 267 (407)
..+..+...+...|++++|...|+++.+.. +.+...+..++..|...|++++|...++++....+.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666666532 3345566666666666666666666666666522222 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.++.++...|++++|...|+++... .|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 6777777777777777777777664 3344444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=69.25 Aligned_cols=90 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
++..+.+.|++++|...|++++...|.+...+..++.++...|++++|+..|+++++.. |.+...+..++.+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 34444444455555555544444444444444444555555555555555555444432 2333444444444445555
Q ss_pred HHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKE 326 (407)
Q Consensus 315 ~~~A~~~~~~~~ 326 (407)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.5e-08 Score=70.54 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+..++..+.+.|++++|+..|+++++.+ |.+...|..+..++...|++++|+..|+++++..+. +..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~ 89 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHA 89 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 34444555555555555555555555544 234455555555555555555555555555554433 333455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.+..+|...|++++|+..|++.++
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=67.93 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+...|++++|...|++..+. .+.+...|..++.++...|++++|+..|+++++..|. ..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHH
Confidence 3445566667777777777777777777764 2335566777777777777777777777777766521 11466667
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCC
Q 015416 89 SVLDALCNN-GKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 89 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 116 (407)
.+..++... |++++|.+.|..+....+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777777 7777777777777766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=66.33 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM--DDASYKFMMKA 272 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 272 (407)
..+..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++|...|++.....+. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555556666666666666666665532 234555666666666666666666666666665455 56666666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 015416 273 LSDG-GKLDEILEIVGGILDD 292 (407)
Q Consensus 273 ~~~~-g~~~~A~~~~~~~~~~ 292 (407)
+... |++++|++.++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.5e-07 Score=67.09 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555555555555555555555542 233 3445555555555555555555555555432 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 234 RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 234 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
.++.+|...|++++|...|++.....|.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5555666666666666666665554444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-08 Score=71.94 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-cccccch
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR-LAVNLGS 126 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ 126 (407)
..|..++..+...|++++|+..|+++.... +.+...+..++.++...|++++|...|+++....+.... ......+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345556666666666666666666666554 334555666666666666666666666666554321000 0000345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
+..++.+|...|++++|.+.|++..... |+...+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 5666666666666666666666666543 4544444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=72.97 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CCCch
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS---DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---VKMSA 84 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ 84 (407)
.++..+...+...|++++|+..+++..+..+.... ...++..++..+...|++++|+..|++++...+. .....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777777778888887777777664111000 0135666777777777777777777776643210 01113
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
.++..+..++...|++++|...+++..+.............++..+..+|...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455566666667777777776666554311100000012344445555555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-07 Score=66.24 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
++..+...|++++|+..|+++....|+.+.....+..++.++...|++++|...|+++.+..+.... ...++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHH
Confidence 3444444444444444444444433211111133444444444444444444444444443322100 0223444444
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 015416 133 GYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~ 152 (407)
+|...|++++|...|+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-07 Score=66.33 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc---chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG---VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
+..+...+...|++++|...|+.+.+..| .+. ..+..++.++...|++++|+..|++++...|+.+....++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 44567788899999999999999998633 344 588899999999999999999999999876432222667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
+..++...|++++|...|+++.+..+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999987644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-07 Score=81.64 Aligned_cols=128 Identities=9% Similarity=-0.031 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---------------LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL 259 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (407)
..+..+...|.+.|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..+++++...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 355566666666677777777776666532 111 4688899999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH-HHHHH
Q 015416 260 KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK-LMEKK 325 (407)
Q Consensus 260 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 325 (407)
+.+..+|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.+++.+ .+++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999863 4555688888888888888887764 33444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-07 Score=82.28 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC---------------cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD---------------GVVYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|..+...|.+.|++++|+..|++..+..+ .+ ..+|..+..+|.+.|++++|+..|++++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p---~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLE---MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456666677777777777777777766422 12 356666777777777777777777777766
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
+ +.+..+|..+..+|...|++++|+..|+++++..+. +..++..+..++.+.++++++.
T Consensus 347 ~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ------NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred C---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHH
Confidence 5 335666667777777777777777777777665443 4456666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-07 Score=71.38 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC---CCHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDS----GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LK---MDDA 264 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~ 264 (407)
++..+...+...|++++|...+++..+. +.++ ...++..++..+...|++++|...+++.... .. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444444444444444444444321 0000 0223444445555555555555555544430 00 0122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444455555544444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-07 Score=69.84 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+|..++.+|...|++++|+..+++++...|.+..+|..++.+|...|++++|+..|++++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888877778888888888888888888888888888876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=69.21 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=55.9
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 207 VNRVDDGATYFRKMVDSG--LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.|++++|+..|+++++.+ -+.+..++..++.+|...|++++|...|+++....|.+..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 456666777777766632 122344666777777777777777777777777666667777777777777777777777
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
.|++++..
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.58 E-value=8.3e-07 Score=78.71 Aligned_cols=122 Identities=7% Similarity=-0.062 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDS---------------GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
+..+...+.+.|++++|+..|+++++. --+.+..+|..++.+|.+.|++++|+..++++++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 444455555555555555555555430 01223458888899999999999999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
+..++..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998863 4566677777777777777666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-07 Score=69.09 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCC-------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE--------NSS-------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.+...+..+.+.|++++|+..|.+++.. .+. .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555556666666666666666665543 100 0112344555555555555555555555555554
Q ss_pred CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 114 HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.+. +..+|..++.+|...|++++|...|++.+..
T Consensus 93 ~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 332 3445555555555555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=85.56 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+..+...+.+.|++++|++.|++..+. .+.+..+|..++.+|.+.|++++|+..|+++++.+ +.+..++..+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~ 82 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 344455667889999999999999986 34468899999999999999999999999999987 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH--HHhcCCHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG--YCGQGRFKDAIEVFR 148 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 148 (407)
+|...|++++|.+.|+++.+..+. +..++..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH------DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT------CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999987654 44466666666 888899999999988
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-07 Score=79.25 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSS-------------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHN 115 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 115 (407)
.|..++..+.+.|++++|+..|+++++..+. .+.+..+|..+..+|.+.|++++|+..++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4667777788888888888888877752100 022334455555555555555555555555554432
Q ss_pred CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 015416 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178 (407)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 178 (407)
. +..++..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 305 ~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 S------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 33445555555555555555555555554432 22344444444444444444333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=80.83 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (407)
...+..+...+.+.|++++|+..|++++.. .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666677777777888888888777663 333321 112222333222211 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HhhcCcHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE-LSKEGREEE 317 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 317 (407)
|.+.|++++|+..+++.+...+.+..++..+..+|...|++++|+..|++++... +.+...+..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999777889999999999999999999999999998763 3445566666655 334566777
Q ss_pred HHHHHHHHHHhhH
Q 015416 318 VVKLMEKKEREKA 330 (407)
Q Consensus 318 A~~~~~~~~~~~~ 330 (407)
+...++++....+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7888887765543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-06 Score=64.33 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-------DD-----ASYKFMMKALSDGGKLDEILEIVGGILDD------- 292 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 292 (407)
+...+..+...|++++|+..|++.+...|. +. ..|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334444455555555555555555552222 22 26666666666666666666666666654
Q ss_pred CCCCCcHHHH----HHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 293 GGIEFSEELQ----EFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 293 ~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+ |-+...| ...+.+|...|++++|+..|++..+..
T Consensus 94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2 3334455 666677777777777777777766443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=68.57 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=70.1
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
..|++++|+..|++..+..+..+.+..+|..++.+|...|++++|+..|+++++.+ |.+..++..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHH
Confidence 46788899999998887410134567788889999999999999999999998876 446778888888899999999
Q ss_pred HHHHHHHHHHhcCCC
Q 015416 102 EALKLFDRMKNEHNP 116 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~ 116 (407)
+|+..|++.+...+.
T Consensus 79 ~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 79 QGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999988877544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-07 Score=84.17 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=78.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
++..+.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+..++..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445566777777777777777642 2246677777777777777777777777777643 3355677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKA--LSDGGKLDEILEIVGGI 289 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 289 (407)
+++|...|+++.+..|.+...+..+..+ +.+.|++++|++.+++.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7777777777777555555555555555 66667777777776653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=65.10 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 015416 198 GLLMDACFEVNRVDDGATYFRKMVDSGLR------PN-----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-------L 259 (407)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 259 (407)
......+...|++++|+..|++.++.... .+ ...|..+..++...|++++|+..+++.+.. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444444555555555555555442100 01 237888888888888988888888888886 6
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 260 KMDDASY----KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 260 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|.+...| ...+.++...|++++|+..|+++++.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677788 99999999999999999999998875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.7e-07 Score=78.36 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
....+..+...+.+.|++++|+..|++.+... |+... +...+++.++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 34467788889999999999999999988753 44332 222333444433221 136788889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCCHHH
Q 015416 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL-SDGGKLDE 281 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 281 (407)
+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|...|+++....|.+...+..+.... ...+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 346778999999999999999999999999886666677777776663 34567788
Q ss_pred HHHHHHHHHhc
Q 015416 282 ILEIVGGILDD 292 (407)
Q Consensus 282 A~~~~~~~~~~ 292 (407)
+..+|.+++..
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=73.91 Aligned_cols=174 Identities=9% Similarity=-0.030 Sum_probs=118.7
Q ss_pred hcCCh-hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 22 RDGDS-DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM----------EEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 22 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
+.|.+ ++|++.++.+... .|-+..+|+.-..++...|+ +++++..++.++..+ +.+..+|..-
T Consensus 40 ~~~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 34443 5678888888875 33466677777777766666 788888888888776 4567777777
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 91 LDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 91 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..++.+.+ ++++++..++++.+..+. +..+|+.-..++.+.| .++++++.++++++.. +.+...|+....
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ 186 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHH
Confidence 77777777 668888888888877655 6667777777777777 7788888888877765 456677777776
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 168 QLCKN--------------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 168 ~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
++.+. +.++++++.+++++... +-+...|.-+...+...+.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 66653 34566777777766532 2245556555555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-05 Score=72.33 Aligned_cols=174 Identities=9% Similarity=-0.017 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM----------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
..++|++.+++++... |-+..+|+.-..++...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788898888865 4566778887777777777 899999999998754 336778888888888888
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---------
Q 015416 209 --RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG--------- 276 (407)
Q Consensus 209 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 276 (407)
+++++++.++++.+.. +-+..+|+.-...+...| .++++++.+.++++..+.+..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999999865 447788888888888888 889999999999988888889998888887763
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 277 -----GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 277 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
+.++++++.+.+++... |-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999874 6677788888888888777444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=62.21 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++..|+++.+.. +.+...+..++..|...|++++|...|++.....|.+...+..++.+|...|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555566665532 334556666666666667777777777666665555666666666667677777777776666655
Q ss_pred c
Q 015416 292 D 292 (407)
Q Consensus 292 ~ 292 (407)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-06 Score=77.33 Aligned_cols=126 Identities=9% Similarity=-0.018 Sum_probs=97.9
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC----CHHHHH
Q 015416 203 ACFEVNRVDDGATYFRKMVDS---GLRP---N-LAVYNRLVGKLVQVGMLDEAKSFFDIMVK----KLKM----DDASYK 267 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~---~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~~ 267 (407)
.+...|++++|+.++++.++. -+.| + ..+++.|+..|...|++++|..++++.+. ...+ ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999988742 1112 2 34889999999999999999999999887 1222 345789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDD----GG--IEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.|+..|...|++++|+.+++++++. .| .+........+..++...|++++|..+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753 12 2333446677888899999999999999998643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=77.98 Aligned_cols=129 Identities=12% Similarity=-0.031 Sum_probs=74.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCc-----cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCCchhhHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGV-----VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVG-----ENSSVKMSAVANNS 89 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~ 89 (407)
+..+|++++|+.++++..+....+ +....+++.|+.+|...|++++|+.++++++. .|++.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777777766542111 11234667777777777777777777776653 23333444556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNE-----HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
|..+|...|++++|..+++++++. |+..+ ....+.+.+..++...+.+++|+.+|..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp---~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP---ITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766542 22110 022233444555555555555555555553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=60.45 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSD 187 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 187 (407)
.+++++|+.+|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344444444444444332 33333344444443 3444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-05 Score=60.49 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=97.6
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cC
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NG 98 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 98 (407)
.+++++|+..|++..+. + ++... |...|...+.+++|+++|+++.+.+ +...+..|..+|.. .+
T Consensus 8 ~~d~~~A~~~~~~aa~~--g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL--N---EMFGC--LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHT--T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCC
T ss_pred ccCHHHHHHHHHHHHcC--C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCc
Confidence 35789999999999986 5 44444 8888888899999999999999876 67888899999988 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
++++|+..|++..+.+ ++.++..|..+|.. .+++++|..+|++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN--------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999999876 55688999999999 899999999999999876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.5e-07 Score=64.92 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------HHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS------EELQ 302 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 302 (407)
...+..++..+...|++++|...|++.....|.+...+..++.++...|++++|+..|++++... +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 44566666667777777777777777766556666677777777777777777777777776642 222 3344
Q ss_pred HHHHHHHhhcCcHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVK 320 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~ 320 (407)
..++.++...|+.++|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 445555555554444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-07 Score=64.89 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.|..++..+...|++++|+..|++++... +.+...+..+..++...|++++|+..|+++++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44444444555555555555555554443 223444444455555555555555555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=53.48 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
..+..++..+...|++++|...|++.....+.+..++..+..++...|++++|+..|+++.... +.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 4556666666667777777777776666555566666677777777777777777777766653 34455555555555
Q ss_pred hh
Q 015416 310 SK 311 (407)
Q Consensus 310 ~~ 311 (407)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=56.55 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+.|...|++.....|.+...+..++.+|...|++++|+..|++++... +.....+..++.+|...|++++|...+++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788888888778889999999999999999999999999999874 566778999999999999999999999998
Q ss_pred HHhhH
Q 015416 326 EREKA 330 (407)
Q Consensus 326 ~~~~~ 330 (407)
.....
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 76544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-06 Score=57.58 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+...+..++..|...|++++|+..|+++++..|.+..+|..++.+|...|++++|+..|++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555566666666666666665554455555555566666666666666666655554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=54.96 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
..+..+...+...|++++|+..|++++... +.+..++..+..++...|++++|...|++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344555555555555555555555555543 2234455555555555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-06 Score=63.36 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF----------DEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+.+.+++|++.++..++.+ |.+...|..+..++...+++ ++|+..|++.++..+. ...+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHH
Confidence 4455666666666666665 33566666666666665543 4777777777776654 555677
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 129 VMADGYCGQG-----------RFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 129 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+..+|...| ++++|++.|++.++.. |+...|.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~ 128 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHH
Confidence 7777777664 6777777777776653 5544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=60.75 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM----------LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
+.+++|.+.++...+.. +.+...|..++.++...++ +++|+..|++.++..|.+..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44555555666555532 3345555555555555544 457777777777766667777778888777664
Q ss_pred -----------CHHHHHHHHHHHHhcCCCCCcHH
Q 015416 278 -----------KLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 278 -----------~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
++++|++.|+++++. .|+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE---QPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh---CCCCH
Confidence 788888888888885 45543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=9.1e-05 Score=51.67 Aligned_cols=70 Identities=4% Similarity=-0.042 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.|.++..+..++.+|...|++++|+..|+++++.+ +.+...+..++.+|...|++++|...+++..+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999974 55677899999999999999999999999876543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0002 Score=61.97 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=33.9
Q ss_pred ccCCcchHHHHHHHHH--HcC---CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 43 VVSDGVVYGSLMKGYF--MKG---MEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 43 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
.+.+...|...+++.. ..+ ...+|+.+|+++++.+|+ ....|..+..+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 4567788888776654 333 357899999999998744 4566665555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.5e-06 Score=75.14 Aligned_cols=115 Identities=9% Similarity=-0.101 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHHHHhcC----C--CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDG----G--IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSAR 348 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (407)
..|++++|+.++++.++.. | .+....++..++.+|...|++++|..++++......+.. ...||..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------G~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY--------PVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------CSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------CCCChHH
Confidence 4688999999999887641 1 122335788899999999999999999999987654432 3358888
Q ss_pred HHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhhhhhhccccCC
Q 015416 349 AAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADANT 406 (407)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
...+..|+.+|..++ +++||+.+.+++........|.+||.+....+|+
T Consensus 382 a~~l~nLa~~~~~qg---------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 382 ASMWLKLGRLYMGLE---------NKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999988766653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=72.36 Aligned_cols=121 Identities=7% Similarity=-0.064 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--C----CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 015416 269 MMKALSDGGKLDEILEIVGGILDDGG--I----EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEA 342 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 342 (407)
.+..+...|++++|+.+++++++... + +....++..++.+|...|++++|+.+++++........ -
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l--------g 364 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF--------P 364 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc--------C
Confidence 34556678999999999999986521 1 22334778889999999999999999999987654432 3
Q ss_pred HHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhhhhhhccccCC
Q 015416 343 AKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADANT 406 (407)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
..||.....+..|+.+|..++ ++++|+.+.+++...-....|.+||.+....+|+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g---------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQG---------MFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 358888999999999999999 9999999999999999999999999988766553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=50.07 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..+...|++++|...|+++.+..|.+.. .+..++.+|...|++++|+..|++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455566666666666666655555555 6666666666666666666666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=65.13 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNE-----HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..+++.|+.+|...|++++|+.+++++++. |+.... ...+++.|...|..+|++++|+.+|++.
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~---~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN---VASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444555555555555444444321 211111 3444555555555555555555544444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=49.70 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
..+...|++++|+..|+++++.+ +.+.. .+..+..+|...|++++|...|+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444445555555555444443 22333 44444444444555555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.002 Score=55.73 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=32.0
Q ss_pred CCchhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 81 KMSAVANNSVLDALC--NNG---KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
+.+..+|...+++.. ..+ +..+|..+|+++++..|. ....+..+..+|.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~ 244 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDI 244 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 556677777775543 333 358899999999998765 4445555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=63.30 Aligned_cols=91 Identities=18% Similarity=0.067 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCccccccchHHHHHH
Q 015416 60 KGMEEEAMECYNEAVGE-----NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH--NPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 132 (407)
.|++++|+.+++++++. +++.+....+++.++.+|...|++++|+.+++++++.. .-+........+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 34445555555444421 22223333444555555555555555555554443210 000111113445555555
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015416 133 GYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~ 150 (407)
.|...|++++|+.++++.
T Consensus 380 ~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 555555555555555444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0023 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=49.7
Q ss_pred CcCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 7 VADPVVYSYLMLGFVRDGD---SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
+.|+..+..+..++...++ .++|..+|++..+. .|.++.....++..+.+.|++++|+..|++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666677776655444 67788888888775 3446677777778888888888888888888877644
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0034 Score=42.82 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 226 RPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
+.+...+..++.++...++ .++|..++++.+...|.++.+...++..+...|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777754444 6788888888888777788888888888888888888888888887763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0063 Score=45.31 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG---MLDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
.+.+.|.+..+.+ .++..+...+..++++.+ +.++++.+|+.+.+...| +...+..+..+|.+.|++++|.+++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444443 245555555666666655 344566666655553322 3445555555666666666666666
Q ss_pred HHHHhc
Q 015416 287 GGILDD 292 (407)
Q Consensus 287 ~~~~~~ 292 (407)
+.+++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.07 Score=44.38 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhc-CCH
Q 015416 210 VDDGATYFRKMVDSGLRPN---LAVYNRLVGKLVQ-----VGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDG-GKL 279 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~ 279 (407)
...|...++++++ +.|+ -..|..|+..|.. .|+.++|.++|++.+...|- +..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4567778888887 4676 4488888888888 48999999999999985554 488888888888884 899
Q ss_pred HHHHHHHHHHHhc
Q 015416 280 DEILEIVGGILDD 292 (407)
Q Consensus 280 ~~A~~~~~~~~~~ 292 (407)
+++.+++++++..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999885
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0091 Score=44.45 Aligned_cols=85 Identities=8% Similarity=0.021 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG---KLDEILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
...+.+.|.......+++..+...+..++++++ ++++++.+|+.+.+.. .| ..+.+..++-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666676666666789999999999999988 6779999999999863 24 4667778888999999999999
Q ss_pred HHHHHHHHhhHH
Q 015416 320 KLMEKKEREKAE 331 (407)
Q Consensus 320 ~~~~~~~~~~~~ 331 (407)
+.++.+.+..+.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999876653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.053 Score=53.22 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=111.1
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 55 KGYFMKGMEEEAME-CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 55 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
......++++.|.+ ++.. ++ +......++..+.+.|.++.|.++.+.- ..-...
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------------~~~f~~ 661 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-------VE-GKDSLTKIARFLEGQEYYEEALNISPDQ-----------------DQKFEL 661 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-----------------HHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-------CC-chHHHHHHHHHHHhCCChHHheecCCCc-----------------chheeh
Confidence 34455678887766 4311 11 0122366777778888888887655211 111334
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 56678888888875433 4677888888888888888888888887753 33455555556666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
.++.+.....| -++....+|.+.|++++|.+++ .+.+++++|..+-+..
T Consensus 727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~---------------------~~~~~~~~A~~lA~~~---- 775 (814)
T 3mkq_A 727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL---------------------IKSQRFSEAAFLGSTY---- 775 (814)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH---------------------HHTTCHHHHHHHHHHT----
T ss_pred HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH---------------------HHcCChHHHHHHHHHh----
Confidence 55444444432 1222333344455555555444 4456677777765542
Q ss_pred CCCCcH----HHHHHHHHHHhhcCcHHHH
Q 015416 294 GIEFSE----ELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 294 ~~~~~~----~~~~~l~~~~~~~g~~~~A 318 (407)
.|.. .........+...|+.+.|
T Consensus 776 --~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 776 --GLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHhccchhHH
Confidence 2233 4455555556666665444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.023 Score=43.44 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=82.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
......|+++.|.++.+.+ .+...|..|+......|+++-|...|.+... +..+.-.|.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~t 73 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHh
Confidence 3445678888888876654 1566888888888888888888888877542 34455556677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
|+.+.-.++-+.....| -++....++...|+++++.++|.+.... |. -.......|..+.
T Consensus 74 g~~e~L~kla~iA~~~g-----------~~n~af~~~l~lGdv~~~i~lL~~~~r~---~e------A~~~A~t~g~~~~ 133 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRE-----------DFGSMLLNTFYNNSTKERSSIFAEGGSL---PL------AYAVAKANGDEAA 133 (177)
T ss_dssp TCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---HH------HHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHCc-----------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---HH------HHHHHHHcCcHHH
Confidence 77776666655555443 3566666777788888888887654331 11 1111223456666
Q ss_pred HHHHHHHH
Q 015416 178 AEELYGEM 185 (407)
Q Consensus 178 a~~~~~~~ 185 (407)
|.++.+++
T Consensus 134 a~~~~~~~ 141 (177)
T 3mkq_B 134 ASAFLEQA 141 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.012 Score=41.00 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK-------LKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+..|+..+...|++..|..+|+.+... ..+...++..+..++.+.|+++.|+.+++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444444444444444431 012233444444444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0065 Score=42.40 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCC----ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGG----VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
+..-+-.|...+.+.|++..|...|+...+..+. ..+...++..|+.++.+.|+++.|+.++++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4444556666677777777777777776654211 11234556666667777777777777777666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.033 Score=54.69 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred HHHHHhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 131 ADGYCGQGRFKDAIE-VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
.......+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 334455677777766 44221 112233666677777788887776552 111 11233456788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
++.|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++.. |..+...|...|+.+...++.+.+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888775432 3567888888888888888888888887754 333444444455555555444444
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.... . +..-..+|.+.|++++|++++.++.
T Consensus 734 ~~~~----~---~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG----K---FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT----C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC----c---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3321 0 1112223444555555555554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.15 Score=38.97 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD 211 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 211 (407)
......|+++.|.++.+.+ .+...|..|.......|+++-|+..|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455566666666665554 2556667777777777777777666666543 334445555566665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
+-.++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444444433 133444445556666666666644
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.58 E-value=0.42 Score=46.85 Aligned_cols=266 Identities=10% Similarity=0.005 Sum_probs=149.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cccc--chHHHHH
Q 015416 56 GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL--AVNL--GSFNVMA 131 (407)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~ 131 (407)
+....|+.++++.+++..+..+..-.+....-..+.-+....|..+++..++...+........- .+.. .+...|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566888888888776654210012222333344445666676667888777766532100000 0011 1223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--H--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLS--F--NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
-+|.-.++ +++.+.+..++... +... . -.|+..+.-.|+.+....++..+.+.. .-+..-+..+.-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 44444444 45566666665532 2221 1 233444556788777788888777632 11222233344455578
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLA--VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
|+.+.+..+.+.+.... .|... ....++.+|+..|+.....+++..+.+....+..-...+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999988888631 22222 2234566788899988888899888874333444444444455556777777777
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhh
Q 015416 286 VGGILDDGGIEFSEELQEFVKGELSKEGRE-EEVVKLMEKKEREK 329 (407)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 329 (407)
+..+.... .|....-..++-+....|.. .+++..+..+....
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 77666542 45555555555555555554 57888888887433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.1 Score=38.40 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHC
Q 015416 157 PDTLSFNNLIDQLCKNGML------AEAEELYGEMSDKGVNPDEY----TYGLLMD---ACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~----~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 223 (407)
.|..+|-..+...-+.|++ ++..++|+++... ++|+.. .|.-+.- .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555555555555666 5666666666553 444321 0111100 112335666677777666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
+-. =..+|....+.-.++|+...|.+++.+.+...+.+...+...++
T Consensus 90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 212 14556666666666777777777777666644444444444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.038 Score=39.54 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE---AKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
+..+.+.|......| .++..+-..+..++.+..+... ++.+++.+.....| .......+..++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 2455555555555555554444 55555555543222 23344555555556666666666
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.018 Score=47.84 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
...|...++++++.+|. -.+...|..++..|.+. |+.++|.+.|++.++..+.. +..++......++..
T Consensus 179 l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHh
Confidence 46788888888887632 12456788888888884 88999999999888887642 466777788888774
Q ss_pred -CCHHHHHHHHHHHhhCCCC--CCHHHHH
Q 015416 138 -GRFKDAIEVFRKMGEYRCS--PDTLSFN 163 (407)
Q Consensus 138 -g~~~~A~~~~~~~~~~~~~--~~~~~~~ 163 (407)
|+.+.+.+.+++.+..... |+....+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888888886544 4444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.05 Score=38.92 Aligned_cols=87 Identities=10% Similarity=-0.000 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE---ILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREE 316 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 316 (407)
......+.+-|.......+++..+-..+..+++++..... ++.+++.+.... .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344556666666655556899999999999999887766 999999988863 23 4556777888999999999
Q ss_pred HHHHHHHHHHHhhH
Q 015416 317 EVVKLMEKKEREKA 330 (407)
Q Consensus 317 ~A~~~~~~~~~~~~ 330 (407)
+|.+.++.+.+..+
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.17 Score=36.49 Aligned_cols=142 Identities=16% Similarity=0.148 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++..-+. + |. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 3457777777777777653 24555666666655555555555555554331 1 11 2344554444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..+-.+- .+...+...+..+...|+-++-.+++..++.. .+|+++....++.+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4444332 25566677788888999999999999986553 48889999999999999999999999999998888
Q ss_pred HHHH
Q 015416 330 AEAK 333 (407)
Q Consensus 330 ~~~~ 333 (407)
.+..
T Consensus 156 ~kEA 159 (172)
T 1wy6_A 156 EKEA 159 (172)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 6644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.057 Score=39.72 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=76.1
Q ss_pred cCHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHhhCCccCCcc-hHHHHHHH------HHHcCCHHHHHHHHHHHH
Q 015416 8 ADPVVYSYLMLGFVRDGDS------DGVFRLFEELKEKLGGVVSDGV-VYGSLMKG------YFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~ 74 (407)
-|..+|-..+...-+.|+. ++..++|++.... +||+.. .|...+.. +...+++++|.++|+.++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4677888888888888998 8888999988884 666542 12222211 123478899999999987
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+....+ ...|......-.+.|+...|.+++.+.+..++.|
T Consensus 88 ~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 664333 7777777777788999999999999998877665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.57 Score=42.25 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHh---CCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 61 GMEEEAMECYNEAVG---ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 61 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
|+++.|++.+-.+.+ .+.+...+......++..|...++++...+.+.-+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 555666555544433 23333334444555566666666666655555555443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.073 Score=39.98 Aligned_cols=119 Identities=5% Similarity=-0.024 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHH
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDS-GLRPN-------LAVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMDDAS 265 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 265 (407)
+..-+..+...+.++.|+-+...+... +..|+ ..++..++.++...|++..|...|++.+. ..+-...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444455666777777777776665421 11222 12556667777777777777777777655 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 266 YKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
...+. ....... ......+.+....++.||.+.|++++|+.+++.++.+.
T Consensus 103 ~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred ccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 11000 0000000 00123455666668888889999999999888876544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.86 Score=40.05 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK--MSAVANNSVLDALCNN-GKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+...|+..|.+.|+.++..+++.....--+.++ ........++..+... +..+.-.++..+..+.... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~ 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ------EK 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH------HH
Confidence 4556677777777777777777766543211110 0111233444444443 3344444444444443221 11
Q ss_pred chH------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 125 GSF------NVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----TLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 125 ~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
.+| .-|+..|...|++.+|.+++.++.+.--..| ...+-.-+..|...+++.++...+....
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122 1345555555555555555555443210001 1133344445555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.75 E-value=2.6e-05 Score=68.96 Aligned_cols=215 Identities=16% Similarity=0.203 Sum_probs=142.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
.+.+|+.|+.+....+.+.+|++.|-++ + |...|..++.+..+.|.+++-++.+...++... ++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-------e~~ 117 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-------ESY 117 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-------STT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-------ccc
Confidence 5678888898888888888887766332 1 445677888888888998888888876665432 334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------------
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG---------------- 189 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------- 189 (407)
+=+.|+-+|++.++..+..++ +. .|+..-...++.-|...|.++.|.-+|..+....
T Consensus 118 IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 556788888888886654332 22 2666666677778888888777776665543210
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 190 ----VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 190 ----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
-.-++.||..+-.+|...+++.-|.-+--.++-. ++ -...++..|...|.+++-+.+++.....-.....+
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 1235668888888888888777665554444421 11 12235666777777887777777777655567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 015416 266 YKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|.-|+..|++- +.++..+.++.
T Consensus 266 FTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHHhc-CHHHHHHHHHH
Confidence 77777777765 34444544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=1 Score=40.62 Aligned_cols=265 Identities=9% Similarity=0.087 Sum_probs=145.6
Q ss_pred cCChhhHHHHHHHHHHhhC---CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH----H
Q 015416 23 DGDSDGVFRLFEELKEKLG---GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL----C 95 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 95 (407)
.|+++.|++.+-.+.+... ...-.......++..|...|+++...+.+.-+..... ..+ .....+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhH--HHHHHHHHHHHHHHh
Confidence 3788999998888876521 1222344577789999999999999888877665432 222 2223333322 2
Q ss_pred hcCCHHHHHHHHHHHHhc--CCCCCcccc---ccchHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---HHHHHHH
Q 015416 96 NNGKFDEALKLFDRMKNE--HNPPKRLAV---NLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--RCSPD---TLSFNNL 165 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l 165 (407)
.....+....+ ..... ......... .......|...|...|++.+|.+++..+... |.... ...+...
T Consensus 106 ~~~~~d~~~~~--~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDLNTRI--SVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHHHHHH--HHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhHHHHH--HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 23333322221 11111 112111111 1122356788888899999999988887542 21111 2356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHH----H
Q 015416 166 IDQLCKNGMLAEAEELYGEMSD----KGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDS-GLRPNLAVYN----R 234 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~ 234 (407)
++.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.+. ....+...+. .
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 7888888999998888887642 222222 234566677777788888888877776641 0111222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDG--GKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 292 (407)
++.+..-.+....-..++..... ..-++...+..++.+|... .+++...+.|...+..
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 22222233333333344443333 1223455666677777663 4566666666554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.46 E-value=2.2 Score=41.98 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=9.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015416 167 DQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~ 187 (407)
.+|+..|+......++..+..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhcc
Confidence 344445554444445555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.21 Score=44.24 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFVK 306 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~ 306 (407)
+...++..+...|+++++...+..+....|.+...+..++.++.+.|+..+|++.|++.... .|+.|...+....-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44567788889999999999999999988899999999999999999999999999987653 48899998877665
Q ss_pred HHHhh
Q 015416 307 GELSK 311 (407)
Q Consensus 307 ~~~~~ 311 (407)
..+..
T Consensus 253 ~il~~ 257 (388)
T 2ff4_A 253 RILRQ 257 (388)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.16 Score=48.66 Aligned_cols=124 Identities=13% Similarity=0.057 Sum_probs=71.8
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC-HHHHHHHHHHHHh-------cCCC-CH---
Q 015416 199 LLMDACFEVNR-VDDGATYFRKMVDSGLRPNLAVY--NRLVGKLVQVGM-LDEAKSFFDIMVK-------KLKM-DD--- 263 (407)
Q Consensus 199 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~~~-------~~~~-~~--- 263 (407)
.++..+...++ .+.|..+++++.+. .|...++ ..++..+...++ --+|.+++.+.++ ..++ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 46677888887764 2332222 222322223322 2245555544442 1111 11
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 264 -------ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 264 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.....=..-|...|+++-|+++.+++... .|.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234456678888888888888775 36667788888888888888888888888876
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.27 Score=36.94 Aligned_cols=133 Identities=9% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPD-------EYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLAV 231 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 231 (407)
+..-+..+...|.++.|+-+...+... +..|+ ..++..+.+++...+++..|...|++.++. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444567788899999999988886542 12344 236677889999999999999999998642 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
...+. ........ .....+...-..+..+|.+.|++++|+.+++.+-.+ .-++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~s--------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQS--------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHHC
T ss_pred ccccc----ccCCCccc--------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHHh
Confidence 11110 00000000 012345566777889999999999999998876443 34455555555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=1.5 Score=38.75 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD-----KGVNPDEYT 196 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 196 (407)
..++..+...|++.+++..+..+.... |-+...|..++.++.+.|+..+|+..|+.+.+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334455555666666665555555443 34555566666666666666666665555432 355555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.22 Score=47.74 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
.+...|+++-|+.+-++...-.|.+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777666666777777777777777777777666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.00014 Score=64.38 Aligned_cols=244 Identities=11% Similarity=0.171 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
.+..|..|..++.+.+...+|++.| ++. .|+..|..++.+..+.|++++-+.++.-+.+.. .+..+=+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDt 120 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVET 120 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHH
Confidence 3456777888888888888888776 222 277788889999999999998888887665543 2334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--------------- 153 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------- 153 (407)
.|+-+|++.++..+-.+++. .| +..-...+++-|...|.++.|.-+|..+...
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~-----N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GP-----NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CC-----SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CC-----CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 78888888888654333221 11 4444556667777777777766666554221
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015416 154 -----RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228 (407)
Q Consensus 154 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 228 (407)
.-..++.||..+..+|...+.+.-|...--.++- .|| ....++..|-..|.+++-+.+++..+... +..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 1124677899999999999888777655444442 222 12345666778888888888888877432 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHhcCCHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKM------DDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
..+|+-|+-.|++- ++++.++.++...+. .|. ....|.-++-.|.+-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77888888888775 555555555544431 111 2234556666666666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=3.3 Score=38.99 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVY----NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
.+.+.|...+....+.. ..+.... ..++..+...+...++...+..... ...+.....-.++...+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 47788888888876432 2333322 2233333344535566666666544 3344444555555566779999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..|..+-... .........+++++...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998886531 23455556677888889999999999988865
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.6 Score=38.25 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=41.4
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
...+.|+++.|++....-++. .|-|...-..|+..++-.|++++|.+-++.+.+.+|...|....|..+|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 345566666666666666663 3446666666666666667777776666666665544444444444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.25 E-value=1.3 Score=45.31 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------------
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN---------------- 191 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------- 191 (407)
..++..+...+.++.+.++..-. +.+....-.++.+|...|++++|..+|++.-. |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34556667777777766644332 23555556778899999999999999987532 110
Q ss_pred -------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 192 -------PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL----AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 192 -------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
.-..-|..++..+.+.+.++.+.++-..+++.....+. ..|..+.+.+...|++++|...+-.+.. ..
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH
Confidence 01234677888888999999999988888764322222 2688899999999999999999987765 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH------------HHHHHH-HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH-HHHHHHH
Q 015416 261 MDDASYKFMMKALSDGGKLDEI------------LEIVGG-ILDDGGIEFSEELQEFVKGELSKEGREEEVV-KLMEKKE 326 (407)
Q Consensus 261 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 326 (407)
--...+..++..++..|..+.- .+++.. +.........+..|..|-.-+...|++..|- .+|+.+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3456677777777766655443 333322 1111011223345666666666667766554 4555555
Q ss_pred Hhh
Q 015416 327 REK 329 (407)
Q Consensus 327 ~~~ 329 (407)
+.+
T Consensus 1049 RL~ 1051 (1139)
T 4fhn_B 1049 RYI 1051 (1139)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=1.2 Score=32.09 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.-.|..++..++..+..... +..-+|-++--....-+-+-..++++.+-+.- |. ..+
T Consensus 18 ildG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF--------Di----------s~C 74 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF--------DL----------DKC 74 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS--------CG----------GGC
T ss_pred HHhhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhc--------Cc----------Hhh
Confidence 34577888888887777644 33444444444444455555555555543321 11 223
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++......+-.+- .+....+..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++
T Consensus 75 ~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 44444444443332 24455566677777788888888888876542 4677777778888888888888888888
Q ss_pred HHHHHCCCC
Q 015416 218 RKMVDSGLR 226 (407)
Q Consensus 218 ~~~~~~~~~ 226 (407)
.++.+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 888887754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.7 Score=41.44 Aligned_cols=105 Identities=8% Similarity=-0.070 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
.++..++..|.+.|+++.|.+.|.++...-.+...-...+..+++.+...+++..+...+.++...-........-....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888888888888888887764322333456677777888888888888888877654321111000000011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
..-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122234456777777777666543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.94 Score=40.60 Aligned_cols=101 Identities=14% Similarity=-0.062 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH---
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN--- 88 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--- 88 (407)
+...+...|.+.|+++.|.++|.++.....+...-...+-.+++.+...+++..+...+.++...... .++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-GGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-CCCHHHHHHHH
Confidence 45678899999999999999999999874343344567888999999999999999999988643211 11222211
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 89 -SVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 89 -~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.-+..+...+++..|.+.|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222345678999999999887654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.4 Score=45.14 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
.++..+...+.++-+.++..- .+.++..-..++.+|...|++++|.++|.++-
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhh-------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345555566666655543322 22345555667888888899999988887753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.65 E-value=0.85 Score=30.85 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.36 E-value=5.4 Score=35.03 Aligned_cols=302 Identities=10% Similarity=0.034 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCcc--CCcchHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVV--SDGVVYGSLMKGYFMK-GMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.....|...|.+.|+.++..+++.......+.++ -.......++..+... +..+.-.++..+.++.. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3456788999999999999998887655321111 1223456677777654 33444444444444321 0011223
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCH
Q 015416 88 ------NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--RCSPDT 159 (407)
Q Consensus 88 ------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 159 (407)
..++..|...|++.+|.+++.++.+.-...+.-..-..++..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 267899999999999999999887643222221223446677788899999999999999877542 222444
Q ss_pred HHHH----HHHHHHH-HcCCHHHHHHHHHHHHhC-C-C-CCC---HHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCC
Q 015416 160 LSFN----NLIDQLC-KNGMLAEAEELYGEMSDK-G-V-NPD---EYTYGLLMDACFEVNRVDDGATYFR-KMVDSGLRP 227 (407)
Q Consensus 160 ~~~~----~l~~~~~-~~g~~~~a~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~ 227 (407)
.... .-+..+. ..++|..|...|-+..+. . . .|. ...|.. +.+.. .++..+...++. .....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl-~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIM-LGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHH-TTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHH-cCCHHHHHHHhccccccccCCc
Confidence 3322 2233455 689999999888776421 1 0 111 112222 22222 233333223222 111111245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
....+..++.+| ..+++.....++.........|+.....+-..+.+ --...+.++.. +-....+..++.
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~----pYsrIsl~~iA~ 324 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE----PYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT----TCSEEEHHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHHhH----hhceeeHHHHHH
Confidence 555566666664 45577776666666554444455422111111100 01111222222 223345555555
Q ss_pred HHhhcCcHHHHHHHHHHHHHhh
Q 015416 308 ELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+. . ..+++...+-+|...|
T Consensus 325 ~l~-l-s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 325 SIQ-L-PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHT-C-CHHHHHHHHHHHHHTT
T ss_pred HHC-c-CHHHHHHHHHHHHHCC
Confidence 443 2 5667777777776544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.94 E-value=2.3 Score=30.56 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGML---DEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.|+..+-..+..++.+..+. ..++.+++.+....+. ....+..+..++.+.|++++|.++.+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45556656666666665543 2456666655553321 2445556666666666666666666666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.25 E-value=4.7 Score=28.96 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 191 NPDEYTYGLLMDACFEVNRV---DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
.|+..+--.+..++.+.... ..++.+++.+.+.+..-....+..|.-++.+.|+++.|.++.+.+++..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34444444444444444332 2445555555543211112244445555555555555555555555533333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.18 E-value=5.7 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
+-++.+....+.|++.+....+++|.+.+++..|.++|+.+.....+...+|-.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y 127 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 127 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHH
Confidence 334444444455555555555555555555555555555555533333333433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.95 E-value=4.1 Score=33.38 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...+.|.++++++....-++.. +-|...-..|++.+|-.|+|+.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556777777777777777653 55666777777888888888888777777766
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.64 E-value=14 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVF 147 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~ 147 (407)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5556666777777777777776665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.43 E-value=5.8 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 244 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+.-+..+-++.+.. ..-|++......+++|.+.+++..|+++|+.+..+.+ ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 44566666776666 6788999999999999999999999999998887743 33556766654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.98 E-value=9.3 Score=27.84 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGMLD---EAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.|+..+-..+..++.+..+.+ +++.+++.+....+. .......+..++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555666666555433 455555555553332 3344555556666666666666666666664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.05 E-value=19 Score=30.69 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY----GEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~ 202 (407)
|.++..=|.+++++++|++++..-.. .+.+.|+...|-++- +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444557777888888876644211 222334333332222 22333445555555555555
Q ss_pred HHHhcCChH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 203 ACFEVNRVD-DGATYFRKMV----DSG--LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 203 ~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+.....-+ .-..+.+.++ +.| ..-++.....++..|.+.+++.+|...|- . +..+.+..+..++.-+..
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T-SCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h-cCCchHHHHHHHHHHHHH
Confidence 554433211 1122222222 112 23366677778888888888888877763 1 222333555555444433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=29 Score=32.66 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMD----ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
.+.+.|...|....+.. ..+......+-. .....+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36778888887775432 223322222222 222334244566666665442 23444444444555567888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCC-------CcH------H--HH
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----------GIE-------FSE------E--LQ 302 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~-------~~~------~--~~ 302 (407)
...|..+............-+.+++...|+.++|..+|..+.... |.+ ++. . ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 888888766333345556667777888888888888887765421 111 000 0 11
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 303 EFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..-+..+...|....|...+..+...
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 12244577888888888887776643
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.67 E-value=19 Score=30.39 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVF 147 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~ 147 (407)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455666666666666666666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.64 E-value=10 Score=27.28 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 244 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+.-+..+-++.+.. ..-|++......+++|.+.+++..|+++|+.+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 34455566666655 678899999999999999999999999999988874 344566776654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.30 E-value=11 Score=27.43 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 192 PDEYTYGLLMDACFEVNRV---DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258 (407)
Q Consensus 192 p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 258 (407)
|+..+--.+..++.+.... .+++.+++.+...+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444433444444444332 244445555444221112223344445555555555555555555553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.42 E-value=21 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++.....++..|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56677777777777777777776664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 407 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (159), Expect = 2e-12
Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 14/202 (6%)
Query: 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKN 112
L + +G A+ + +AV + + A ++ + L FD A+ + R +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 113 EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172
+ NL Y QG AI+ +R+ E + ++ NL + L +
Sbjct: 232 LSPNHAVVHGNLACV------YYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEK 284
Query: 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-V 231
G +AEAE+ + + + L + E +++ +RK ++ + P A
Sbjct: 285 GSVAEAED-CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAA 341
Query: 232 YNRLVGKLVQVGMLDEAKSFFD 253
++ L L Q G L EA +
Sbjct: 342 HSNLASVLQQQGKLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFD 108
V+G+L Y+ +G+ + A++ Y A+ A ++ +AL G EA ++
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168
S N +A+ QG ++A+ ++RK E + +NL
Sbjct: 296 TALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASV 348
Query: 169 LCKNGMLAEAEELY 182
L + G L EA Y
Sbjct: 349 LQQQGKLQEALMHY 362
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/254 (8%), Positives = 53/254 (20%), Gaps = 30/254 (11%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ G E A + + + + + D + ++
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
NLG+ + + D
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 177 EAEELYGEMSDK-------------------------GVNPDEYTYGLLMDACFEVNRVD 211
A + ++ P+ + F
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 212 DGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270
A + + + L PN Y L L + + D A + + + + +
Sbjct: 186 WLAIHHFEKAVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 271 KALSDGGKLDEILE 284
+ G +D ++
Sbjct: 245 CVYYEQGLIDLAID 258
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.5 bits (102), Expect = 2e-05
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 9/130 (6%)
Query: 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114
K +G ++A+E EA+ + A +S ++ LC +G F+ A + +
Sbjct: 4 KNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
Query: 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174
A L KD + + + + +
Sbjct: 61 PEYLPGASQLRHL------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 114
Query: 175 LAEAEELYGE 184
+ EL +
Sbjct: 115 YEQVSELALQ 124
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.001
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 137 QGRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP-DE 194
+G+ + A+E+ + + SP D ++ I+ LC +G A+E + P
Sbjct: 9 EGQLQQALELLIEA--IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYL 64
Query: 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253
L D A G L + ++
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 7e-05
Identities = 22/225 (9%), Positives = 54/225 (24%), Gaps = 50/225 (22%)
Query: 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALK---------------- 105
M ++ + +A + + + + + + +
Sbjct: 1 MSLQSAQYLRQAEVLKADM---TDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVE 57
Query: 106 --------------LFDRMKNEHNPPK-RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
L + KN NP + + NL F A G + ++
Sbjct: 58 QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAA-----SGFYTQLLQELCT- 111
Query: 151 GEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVN 208
+ + + L K + + + ++ L D N
Sbjct: 112 -VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQ----SSSCSYICQHCLVHLGDIARYRN 166
Query: 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGK-LVQVGMLDEAKSFF 252
+ +Y+R L P+ + G ++
Sbjct: 167 QTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYY 209
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 7e-04
Identities = 16/116 (13%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM-KNEHN 115
+ K + A++ Y++A + + + G +++ +L ++ +
Sbjct: 14 AYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171
+ ++ + + Y + ++KDAI + K +PD L +++ K
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (86), Expect = 0.002
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 9/137 (6%)
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL-DALCNNGKFDEALKLFDRMKNEHN 115
+ M G + A + + A G+F+ A + + +
Sbjct: 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 282
Query: 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK-------MGEYRCSPDTLS-FNNLID 167
+ ++ + ++ Y GR DA V G +
Sbjct: 283 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 342
Query: 168 QLCKNGMLAEAEELYGE 184
QL + L E E+ +
Sbjct: 343 QLIQLNTLPELEQHRAQ 359
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.53 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.51 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.47 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.04 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.99 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.99 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.94 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.93 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.88 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.77 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.62 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.05 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.98 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.78 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.96 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.08 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.17 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 86.91 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.94 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.4e-24 Score=191.66 Aligned_cols=303 Identities=15% Similarity=0.101 Sum_probs=260.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
+...+.+.|++++|+++|+++.+. .|-++.++..++.+|.+.|++++|+.+|+++++.+ |.+..+|..++.+|.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~l~~~~~ 78 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHhh
Confidence 456778899999999999999986 34477889999999999999999999999999887 446788999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccc------------------------------------------------------
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLA------------------------------------------------------ 121 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~------------------------------------------------------ 121 (407)
..|++++|+..+..+.+..+......
T Consensus 79 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 99999999999998887654321000
Q ss_pred --------cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 122 --------VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 122 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
.+...+..+...+...|++++|...+++.+... |.+...|..++..+...|++++|+..+++....+ +.+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 023456677788899999999999999988865 4567789999999999999999999999998753 446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+..++...|++++|...|+++.+.. +.+..++..++..+...|++++|...++......+.+...+..++.++
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 7788889999999999999999999999853 345779999999999999999999999999998888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
...|++++|+..|+++++.+ |.+...+..++.+|.+.|++++|...+++..+..
T Consensus 316 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999864 5667788999999999999999999999987654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.6e-21 Score=173.15 Aligned_cols=292 Identities=15% Similarity=0.097 Sum_probs=254.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS--------- 79 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------- 79 (407)
++..+..+...|.+.|++++|+..|+++.+. .|.+..+|..++.+|.+.|++++|+..+..+....+.
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccc
Confidence 5778899999999999999999999999986 3447789999999999999999999999887765421
Q ss_pred --------------------------------------------------------CCCchhhHHHHHHHHHhcCCHHHH
Q 015416 80 --------------------------------------------------------VKMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 80 --------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
.+.+...+..+...+...|+++.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHH
Confidence 012344566677888889999999
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
...+++..+..+. +..++..+..++...|++++|+..+++....+ +.+...+..++..+.+.|++++|+..|+
T Consensus 189 ~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 189 IHHFEKAVTLDPN------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp HHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999887654 66689999999999999999999999998865 5677888899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 015416 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD 263 (407)
Q Consensus 184 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (407)
++++.. +-+..++..+..++...|++++|.+.++...... +.+...+..++..+...|++++|+..|++.++..|.+.
T Consensus 262 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 339 (388)
T d1w3ba_ 262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999853 3357889999999999999999999999998753 66788999999999999999999999999999778889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 264 ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
.++..++.+|...|++++|+..|+++++.+ |-+...+..++.+|.+.|+
T Consensus 340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 340 AAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999863 5567789999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.5e-17 Score=141.56 Aligned_cols=231 Identities=14% Similarity=0.051 Sum_probs=148.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
..+..+.+.|++++|+..|+++++.+ |.+..+|..++.+|...|++++|...|.++.+..+. +...+..++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la 94 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALA 94 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc------ccccccccc
Confidence 34444444555555555555555443 223444444445555555555555555554444322 333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCS--------------PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYT 196 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~ 196 (407)
.+|...|++++|.+.++........ .+.......+..+...+.+.++...|.++.+.. ..++...
T Consensus 95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~ 174 (323)
T d1fcha_ 95 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred ccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence 4555555555555555444332100 000111112233445567788888888877532 2335677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
+..+...+...|++++|...|++..... +-+..+|..++.+|...|++++|...|+++++..|.+..++..++.+|.+.
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 253 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 253 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence 8888899999999999999999988753 346778999999999999999999999999987777888999999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|++++|+..|+++++.
T Consensus 254 g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 254 GAHREAVEHFLEALNM 269 (323)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998874
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.9e-16 Score=136.83 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=194.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
..-..+..+.+.|++++|+..|+++++..|. +..+|..++.+|...|++++|...|.+..+.. |-+...|..+
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 93 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMAL 93 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccc
Confidence 3445677889999999999999999998755 67789999999999999999999999998865 5567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----------------HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEY----------------TYGLLMDACFEVNRVDDGATYFRKMVDSG-LRPN 228 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 228 (407)
+..|...|++++|.+.++++.... |+.. .....+..+...+.+.++...|.++.+.. -.++
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~ 171 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 171 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred cccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999988742 2211 11112233445567788999998887632 2345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
..++..++..+...|++++|...|++.....|.+..+|..++.+|...|++++|++.|+++++.. |-+...+..++.+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHH
Confidence 77889999999999999999999999999778889999999999999999999999999999864 5567789999999
Q ss_pred HhhcCcHHHHHHHHHHHHHhh
Q 015416 309 LSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~~ 329 (407)
|.+.|++++|+..+++..+..
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999987644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.4e-13 Score=112.78 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
+|+.+..++.+.+.+++|++++++++..+ |-+..+|+....++...| ++++|+..++.+++..+. +..+|
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------~~~a~ 115 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVW 115 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh------hhhHH
Confidence 34444444555555555555555555544 334445555555554443 255555555555554433 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..+..++.+.|++++|+..++++++.. |.+...|..++..+...|++++|+..++++++.+ +-+...|+.+..++.+.
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHc
Confidence 555555555555555555555555543 3344555555555555555555555555555432 11344444444444433
Q ss_pred CC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 208 NR------VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 208 g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+. +++|+..+..+++.. +.+...|+.+...+... ..+++...++...+
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 33 344555555555432 22444454444443322 23445555554444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.2e-13 Score=113.62 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=181.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
..+++.+..++.+.+.+++|+++++++++..|. +..+|+....++...| ++++|+..+++.+... |-+..+|
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~ 115 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVW 115 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHH
Confidence 456777888899999999999999999998766 7778999999998876 5999999999998875 5678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
..+...+.+.|++++|+..++++++.. +-+...|..++..+...|++++|++.++++++.+ +.+...|+.+...+...
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHc
Confidence 999999999999999999999999853 3368899999999999999999999999999864 44677899888888776
Q ss_pred CC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Q 015416 243 GM------LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 243 g~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
+. +++|+..+.+++...|.+...|..+...+...| .+++.+.++...+......+...+..++..|..
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 65 578999999999988889999988887765544 678888888887754334455566667766644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.5e-12 Score=113.19 Aligned_cols=279 Identities=12% Similarity=0.033 Sum_probs=164.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS--AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
......++...|++++|+.+|++++...|...+. ..++..++.+|...|++++|...|+++.+..............+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3344555666777777777777776654321111 23455566677777777777777776655322211111123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEY----RCSPD---TLSFNNLIDQLCKNGMLAEAEELYGEMSDKG----VNPDEYT 196 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~ 196 (407)
..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 55666777777777777776665321 11111 1244556667777777777777777765421 1112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHH
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDS--GLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM----DDASY 266 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 266 (407)
+......+...+....+...+...... ..... ...+..++..+...|+++.|...+.......+. ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555566667777777777777665531 11111 224555666677778888888777776652221 23445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDD---GGIEF-SEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..+..++...|++++|...+++++.. .+..| ....+..++.+|.+.|++++|.+.+++....
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56677777888888888887776532 12222 2346667777788888888888887776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=8.9e-12 Score=108.10 Aligned_cols=280 Identities=12% Similarity=0.041 Sum_probs=203.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CCCchhhH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD--GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---VKMSAVAN 87 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ 87 (407)
.......+...|++++|+.++++..+..|...+. ..++..++.+|...|++++|+..|+++....+. .+.....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3445567789999999999999998852221110 246778899999999999999999998764311 12223456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPP--KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR----CSPDTLS 161 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~ 161 (407)
..+...+...|++..+...+.......... .........+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 677788999999999999998876532110 0000122356677889999999999999998876532 1223446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDK--GVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVY 232 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 232 (407)
+..+...+...+++..+...+.+.... ..... ...+..+...+...|+++.|...+....+..... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 667778888999999999988876541 11111 3346667778889999999999999887542222 24467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMVK-----KLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++..+...|++++|...++.+.. +..| ...++..+..+|...|++++|.+.+++++..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999999875 2222 3557888999999999999999999988763
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.5e-13 Score=118.93 Aligned_cols=273 Identities=9% Similarity=-0.039 Sum_probs=181.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHH----------HHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY----------FMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
++......+..++|+++++.+.+. .|-+...|+.....+ ...|.+++|+.+|+.++..+ |.+..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~---pk~~~ 108 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYG 108 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC---CCcHH
Confidence 333333334457888888888875 222444554433332 23345778888888888776 44667
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 86 ANNSVLDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSF-NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 86 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
.|..+..++...+ ++++|...+.++.+..+. +...+ ......+...+.+++|+..++.++... +-+...|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~ 181 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch------hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHH
Confidence 7777776666655 478888888888877544 33344 344567777888888888888888775 4567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+.+..++...|++++|...++...+. .|. ...+...+...+..+++...+....... +++...+..++..+...
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence 88888888888887776555444331 111 1223344555667777777777777643 34445666677777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
|++++|...+.+.....|.+..++..++.++...|++++|++.|+++.+.+ |.....|..+...+
T Consensus 256 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~ 320 (334)
T d1dcea1 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHH
Confidence 888888888888777666667778888888888888888888888888763 33444555554444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.3e-12 Score=106.98 Aligned_cols=152 Identities=14% Similarity=-0.020 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHHhhCCccC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015416 26 SDGVFRLFEELKEKLGGVVS-DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEAL 104 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 104 (407)
.+.++.-++++.....-.++ ...+|..++.+|.+.|++++|+..|++++..+ |.+..+|..++.+|...|++++|+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhh
Confidence 34555555665543110111 23466777778888888888888888888776 346677777888888888888888
Q ss_pred HHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015416 105 KLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 184 (407)
..|+++++..+. +..++..++.+|...|++++|...|+..++.. +.+......+..++.+.+..+.+..+...
T Consensus 92 ~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 92 EAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhHHHHHHhh------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888776544 45577777777888888888888887777654 33444444444455555555555555444
Q ss_pred HHh
Q 015416 185 MSD 187 (407)
Q Consensus 185 ~~~ 187 (407)
...
T Consensus 165 ~~~ 167 (259)
T d1xnfa_ 165 FEK 167 (259)
T ss_dssp HHH
T ss_pred hhc
Confidence 444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=3.1e-11 Score=102.75 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
+..++|..+|++.++...+.+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578889999988765566677888889999999999999999999987543333557888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 218 RKMVDSGLRPNLAVYNRLVGK-LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE 296 (407)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 296 (407)
+++++.+ +.+...|...+.. +...|+.+.|..+|+.+....|.++..|...+..+...|+++.|..+|++++...+.+
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9998764 3345555555544 3456899999999999999888899999999999999999999999999999875444
Q ss_pred Cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 297 FS--EELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 297 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
|. ..+|...+..-...|+.+.+.++.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 347777788778889999999998887553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=8.5e-13 Score=109.62 Aligned_cols=220 Identities=13% Similarity=-0.015 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH
Q 015416 62 MEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF 140 (407)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 140 (407)
+.+.++.-+++.+......++ ...+|..++.+|.+.|++++|+..|++.++..+. ++.+|..++.+|.+.|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNF 87 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHhhhchHHHHHHHH
Confidence 455677777777765421111 3457778889999999999999999999988655 777899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 141 KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
++|+..|+++++.. |.+..++..++.+|...|++++|...|++.++.. +.+......+..++.+.+..+....+....
T Consensus 88 ~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 88 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999999999875 4567788999999999999999999999998753 334555555555566666665555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 221 VDSGLRPNLAVYNRLVGKLVQVGM----LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.... ++...+. ++..+..... .+.+...+.......+....++..++..|...|++++|++.|++++..
T Consensus 166 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 166 EKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5432 2222222 2222222212 222222222222222223457788899999999999999999999885
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=1.1e-12 Score=113.43 Aligned_cols=262 Identities=8% Similarity=-0.012 Sum_probs=200.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH----------HHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA----------LCNNGKFDEALKLFDRMKNEHNPPKRL 120 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~ 120 (407)
..++......+..++|++++++++..+|+ +...|+..... +...|++++|+.+++.+.+..+.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk---- 105 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---- 105 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 33444333444558999999999988743 45555443333 23345588999999999988755
Q ss_pred ccccchHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 121 AVNLGSFNVMADGYCGQG--RFKDAIEVFRKMGEYRCSPDTLSFN-NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 121 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
+...|..+..++...+ ++++|+..+.++.... +++...+. .....+...+.++.|+..++.+++.+ +-+...|
T Consensus 106 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~ 181 (334)
T d1dcea1 106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (334)
T ss_dssp --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred --cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHH
Confidence 6667777877777766 4889999999998865 45666654 45567778899999999999999864 3368889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 198 GLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
..+..++...|++++|...+....+. .|. ...+...+...+..+++...+.......+++...+..++..+...|
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 256 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ 256 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence 99999999999999887777665542 121 2233445566778888999999988877788888888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
++++|+..+.+....+ +.+...+..++.+|.+.|++++|...++++.+..+
T Consensus 257 ~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 257 SELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999998863 55667888999999999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1.4e-10 Score=98.66 Aligned_cols=188 Identities=10% Similarity=0.083 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 178 (407)
..++|..+|++.++..++. +...|...+..+.+.|+++.|..+|++++.........+|...+..+.+.|+++.|
T Consensus 79 ~~~~a~~i~~ral~~~~p~-----~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 79 FSDEAANIYERAISTLLKK-----NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHH
Confidence 3467777777777643222 44567777777778888888888888877654222344677777777788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDA-CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..+|+++++.+ +.+...|...+.. +...|+.+.|..+|+.+++. .+.+...|...+..+...|+++.|..+|++...
T Consensus 154 r~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 154 RMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88888887653 2233444433333 33457788888888888865 344667788888888888888888888888877
Q ss_pred cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 258 KLKMD----DASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 258 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..+.+ ...|...+..-...|+.+.+.++++++.+.+
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 43322 3467777776677788888888888877654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.05 E-value=7.4e-07 Score=73.16 Aligned_cols=222 Identities=15% Similarity=0.070 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
|+..+..|...+.+.+|+++|++.|++..+. | +..++..|..+|.. ..++..|..++......+ +.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~ 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YS 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----cc
Confidence 3455566666666777777777777777664 4 55566666666665 456777777777766654 23
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC
Q 015416 85 VANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCS 156 (407)
Q Consensus 85 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 156 (407)
.....+...+.. ..+.+.|...++...+.+.. .....+...+.. ......+...+......
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--------~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 139 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--- 139 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhhhh--------hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---
Confidence 333444443332 34566666666666655422 123333333332 23345555555554442
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 015416 157 PDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPN 228 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 228 (407)
.+...+..+...|.. ..+...+...++...+.| +......+...|.. ..+++.|..+|.+..+.| +
T Consensus 140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~ 213 (265)
T d1ouva_ 140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 213 (265)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---C
Confidence 345555555555553 234445555555554433 33344444444433 334555555555555543 3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 015416 229 LAVYNRLVGKLVQ----VGMLDEAKSFFDIMVK 257 (407)
Q Consensus 229 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 257 (407)
...+..|+..|.. ..+.++|.++|++...
T Consensus 214 ~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 214 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 3344444444443 2244455555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=5.8e-09 Score=87.46 Aligned_cols=200 Identities=9% Similarity=-0.036 Sum_probs=101.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY----RC-SPDTLSFNN 164 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 164 (407)
.+.+|...+++++|...|.++.+..........-..+|..++.+|.+.|++++|++.+++.... |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3556777778888888877776542111100002346667777777777777777777665432 10 001234455
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHH
Q 015416 165 LIDQLCK-NGMLAEAEELYGEMSD----KGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN------LAVY 232 (407)
Q Consensus 165 l~~~~~~-~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 232 (407)
++..|.. .|++++|+..|+++.+ .+..+. ..++..++..|...|++++|...|+++........ ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555543 4677777777766543 111111 23455566666666666666666666654321111 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMVKKLKM-----DDASYKFMMKALSD--GGKLDEILEIVGGI 289 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 289 (407)
..++..+...|+++.|...+++..+..+. .......++.++.. .+.+++|+..|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444555566666666666666552221 11223344444433 23455555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.4e-08 Score=79.28 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
...+...|++++|++.|.+ -.+|++.+|..++.+|...|++++|+..|+++++.+ +.+...|..++.+|.+
T Consensus 12 g~~~~~~~d~~~Al~~~~~------i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSA------VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHT------SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHHHh
Confidence 3344555666666555532 134455555556666666666666666666666555 3345555556666666
Q ss_pred cCCHHHHHHHHHHHHhc
Q 015416 97 NGKFDEALKLFDRMKNE 113 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~ 113 (407)
.|++++|+..|++.+..
T Consensus 83 ~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHh
Confidence 66666666666555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.7e-08 Score=84.61 Aligned_cols=202 Identities=8% Similarity=-0.049 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEY----RCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDK----GV-NPDEYT 196 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~ 196 (407)
|...+.+|...|++++|.+.|.+.... +-++ -..+|..++.+|.+.|++++|+..+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 333456789999999999999988653 2111 1357899999999999999999999987642 11 111455
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-------
Q 015416 197 YGLLMDACFE-VNRVDDGATYFRKMVDS----GLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD------- 263 (407)
Q Consensus 197 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------- 263 (407)
+..++..|.. .|++++|.+.|+++.+. +.++. ..++..++..|...|++++|..+|+++....+.+.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6677777754 69999999999988642 21111 33688899999999999999999999988333222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHhh--cCcHHHHHHHHHHHHHh
Q 015416 264 ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE---ELQEFVKGELSK--EGREEEVVKLMEKKERE 328 (407)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 328 (407)
..+...+.++...|+++.|...+++..+.+.--++. .....++.++.. .+++++|+..|+++.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 234566777888999999999999998764211222 234555666654 35688999888766544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.6e-08 Score=71.87 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=72.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKL 279 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 279 (407)
-+..+...|++++|+.+|.++++.. +.+...|..++.+|...|++++|+..+...+...|.++..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4556667777777777777777643 445667777777777777777777777777776667777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 280 DEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
++|+..|+++++.. |-+...+..+.+
T Consensus 88 ~~A~~~~~~a~~~~--p~~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE--ANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 77777777777653 344444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=8.9e-09 Score=80.36 Aligned_cols=142 Identities=13% Similarity=-0.006 Sum_probs=114.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
+..+...|+++.|++.|.++ .+|+..+|..++.+|...|++++|++.|++.++..+. ...+|..+..+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------~~~a~~~~g~~ 79 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGML 79 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------hhhhHHHHHHH
Confidence 66778899999999999864 2557788999999999999999999999999998765 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCS--------------P-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 198 (407)
|.+.|++++|++.|++.+..... . ...++..+..++.+.|++++|.+.|..+.+....+......
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~ 159 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 159 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHH
Confidence 99999999999999997643111 1 13567788999999999999999999998865555454555
Q ss_pred HHHHHHHhc
Q 015416 199 LLMDACFEV 207 (407)
Q Consensus 199 ~l~~~~~~~ 207 (407)
..+..+.+.
T Consensus 160 ~Al~~~~~~ 168 (192)
T d1hh8a_ 160 KAMECVWKQ 168 (192)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.99 E-value=1.8e-06 Score=70.79 Aligned_cols=95 Identities=7% Similarity=0.078 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAV 122 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 122 (407)
+..+..|+..+.+.+++++|+++|+++.+.+ +..++..|...|.. ..++..|...+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--------
Confidence 4456666777777777777777777776655 44555556666655 456666777666666554
Q ss_pred ccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 123 NLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 123 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
++.....+...+.. ..+.+.|...++.....|
T Consensus 69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 22234444444332 345566666666655544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.5e-08 Score=71.99 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
..+...|++++|+..|+++++.+ |.+...|..+..+|...|++++|+..+.++++..+. +...|..++.++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~ 81 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhccc------hhhHHHHHHHHH
Confidence 33444444444444444444443 223444444444444444444444444444444322 333444444444
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 015416 135 CGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~ 152 (407)
...|++++|+..|++.++
T Consensus 82 ~~~~~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLK 99 (117)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444444444444444444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.9e-08 Score=74.86 Aligned_cols=107 Identities=8% Similarity=0.029 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
+...+..|.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|...|+++++..|.+..+|..++.+|...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 3445667888999999999999988764 446778899999999999999999999999987788889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
|++++|+..++++.... |-+...+..+.
T Consensus 92 g~~~eA~~~~~~a~~~~--p~~~~~~~~l~ 119 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK--PHDKDAKMKYQ 119 (159)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 99999999999998863 34444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.7e-08 Score=76.21 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
..+..|.+.|++++|+..|+++++.+ |.+...|..++.+|...|++++|...|+++++..+. +..+|..++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~------~~~a~~~~g 85 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRA 85 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc------chHHHHHHH
Confidence 34556667777777777777777665 345666667777777777777777777777666543 555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
.+|...|++++|+..|++.....
T Consensus 86 ~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 86 ASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777777777777766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=7.1e-09 Score=81.73 Aligned_cols=101 Identities=12% Similarity=-0.003 Sum_probs=81.3
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
|+...+......|.+.|++++|+..|.+.+.. .|.++..|..++.+|.+.|++++|+..|+++++.+ |-+..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~---p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC---CCcHHHH
Confidence 66777777788888888888888888888875 34577788888888888888888888888888776 3457778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
..++.+|...|++++|+..|+++.+..
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=4.1e-08 Score=77.18 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 192 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
|+...+...+..|.+.|++++|+..|.++++.. +.+..+|..++.+|.+.|++++|+..|+++++..|.+..+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 677788888999999999999999999998764 5577789999999999999999999999999877778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 015416 272 ALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+|...|++++|+..|++++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.80 E-value=2.3e-08 Score=70.38 Aligned_cols=94 Identities=11% Similarity=-0.040 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+..++..+.+.|++++|+..|++++..+ |-+..+|..++.++.+.|++++|+..|+++++..|. +..++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 88 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHA 88 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccccc------cccchH
Confidence 34456667777777777777777777765 335677777777777777777777777777776544 556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
.++.+|...|++++|++.|++.+
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777777777777776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.77 E-value=6.6e-08 Score=67.89 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
++..+.+.|++++|...|++++...|.++.+|..++.++.+.|++++|+..|+++++.+ |.+...+..++.+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCC
Confidence 34444555555555555555555444455555555555555555555555555555542 3344455555555555555
Q ss_pred HHHHHHHHHH
Q 015416 315 EEEVVKLMEK 324 (407)
Q Consensus 315 ~~~A~~~~~~ 324 (407)
+++|.+.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=5.2e-07 Score=68.53 Aligned_cols=135 Identities=10% Similarity=-0.067 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+...+..+.+.|++++|+..|.+.+... |.... ....-......+ -..+|+.++.+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 345566777788888888888888776531 10000 000000111111 123677889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
.+.|++++|+..++..+...|.++.++..++.+|...|++++|+..|+++++.+ |-+..+...+..+..+.+...+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999999999999999874 4566677666666555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.2e-08 Score=90.52 Aligned_cols=228 Identities=11% Similarity=-0.022 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015416 28 GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107 (407)
Q Consensus 28 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (407)
+|.+.|++..+.. +..+.++..+..++...|++++| |++++..+|. ....++... ......+..+.+.+
T Consensus 4 eA~q~~~qA~~l~---p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~---~a~~~~~e~--~Lw~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE---YALDKKVEQ--DLWNHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHH---GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH---HHHHHTHHH--HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh---hHHHHhHHH--HHHHHHHHHHHHHH
Confidence 5778888887742 22456677777788888877765 6777655421 111121111 11112245566677
Q ss_pred HHHHhcCCCCCccccccchHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 108 DRMKNEHNPPKRLAVNLGSFN-VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
+...+....+.. ..... .+...+...+.++.++..+....... +++...+..+...+.+.|+.+.|...+....
T Consensus 73 r~~~k~~~~~~~----~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 73 QGQAKNRANPNR----SEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHHHSCSSCTTT----THHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHH
T ss_pred HHhcccccCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 766654433311 11111 11222233455566665555544432 3455567777788888888888887777665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 015416 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASY 266 (407)
Q Consensus 187 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 266 (407)
... ...++..++..+...|++++|...|.++.+.. +.+...|+.|+..+...|+..+|...|.+.+.-.+|.+.++
T Consensus 148 ~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~ 223 (497)
T d1ya0a1 148 SYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred CCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence 421 13466778888888888888888888888743 33456888888888888888888888888888777788888
Q ss_pred HHHHHHHHh
Q 015416 267 KFMMKALSD 275 (407)
Q Consensus 267 ~~l~~~~~~ 275 (407)
..|...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.7e-08 Score=91.25 Aligned_cols=227 Identities=9% Similarity=-0.009 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH
Q 015416 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 65 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
+|.++|+++.+.. +....++..+..++...+++++| |++++...+. ....++...... ...+..+.
T Consensus 4 eA~q~~~qA~~l~---p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~------~a~~~~~e~~Lw--~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE------YALDKKVEQDLW--NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHHH---GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH------HHHHHTHHHHHH--HHHTHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh------hHHHHhHHHHHH--HHHHHHHH
Confidence 6889999998765 22355667777888888888776 6777655321 111111111111 11245567
Q ss_pred HHHHHHhhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 145 EVFRKMGEYRCSPDTLSFNN--LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+.++...+....++..-... ....+...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 77777765443333322211 2222233456666666665554432 23466778888899999999999988887765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 223 SGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.. ...++..++..+...|++++|...|.+.....|.+..+|+.++..+...|+..+|+..|.+.+... +|-...+
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHH
Confidence 21 235788899999999999999999999999888899999999999999999999999999998863 6666677
Q ss_pred HHHHHHHhh
Q 015416 303 EFVKGELSK 311 (407)
Q Consensus 303 ~~l~~~~~~ 311 (407)
..|...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-07 Score=66.61 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML---DEAKSFFDIMVKKLKMD--DASYKFMMKALS 274 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 274 (407)
+++.+...+++++|++.|++.+..+ +.+..++..++.++.+.++. ++|+.+|+++....+.+ ..++..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4444444455555555555554432 23444444444444433322 23444444444321111 124444455555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILD 291 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~ 291 (407)
+.|++++|++.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.5e-07 Score=66.95 Aligned_cols=93 Identities=11% Similarity=-0.040 Sum_probs=37.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCc-hhhHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---EEEAMECYNEAVGENSSVKMS-AVANNSVL 91 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~ 91 (407)
+++.+...+++++|.+.|+..... .|.++.++..++.++.+.++ +++|+.+|++++..++ .|+ ..+|..++
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~--~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC--CchHHHHHHHHH
Confidence 344444444444444444444442 22333444444444433222 2234444444443321 111 12333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 015416 92 DALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.+|.+.|++++|++.|+++++.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.5e-06 Score=65.88 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
...+...+..+.+.|++++|+..|.+.+... +.+.. ....-......+. ..+|+.+..+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~-------------~~~~~~~~~~~~~-------~~~~~nla~~ 71 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------FSNEEAQKAQALR-------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------CCSHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccc-------------cchHHHhhhchhH-------HHHHHHHHHH
Confidence 3455667889999999999999999987642 11100 0000001111111 1356677888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
|.+.|++++|+..++.+++.. +.+..++..++.+|...|++++|...|+.+.+..|.+..+...+..+..+.+
T Consensus 72 y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888753 3467788888888888888888888888888866667776666655544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=3.9e-07 Score=65.54 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccc-ccchHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV-NLGSFN 128 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~ 128 (407)
+..++..+.+.|++++|+..|++++..+ |.+..++..+..+|.+.|++++|+..++++++..+......+ -..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456667777777777777777777765 445667777777777777777777777776664332110000 012455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.+...+...+++++|+..|.+.+..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5566666666777777777666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.53 E-value=2.2e-06 Score=63.58 Aligned_cols=126 Identities=13% Similarity=-0.081 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+...+..+.+.|++.+|+..|.+++..- +.... ..+......... ....+|..++.+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~------------~~~~~~~~~~~~------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE------------WDDQILLDKKKN------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT------------CCCHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh------------hhhHHHHHhhhh------HHHHHHhhHHHHH
Confidence 356667777888888888888888877531 11000 000000000000 1124677888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
.+.|++++|+..++.++...|.+..+|..++.++...|++++|+..|+++++.+ |-+..+...+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~~ 143 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 143 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 999999999999999998888889999999999999999999999999998863 344545544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.53 E-value=4.1e-06 Score=63.24 Aligned_cols=130 Identities=10% Similarity=-0.037 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (407)
..+...+..+.+.|++.+|+..|++.+..- ..+. ....-......+ ...+|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG---------------LSEKESKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---------------CCHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc---------------cchhhhhhcchh-------HHHHHHhHHHH
Confidence 455566677777777777777777665410 0000 000000001111 13367778899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcC
Q 015416 239 LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEG 313 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 313 (407)
|.+.|++++|+..++.++...|.+..+|..++.++...|++++|+..|.+++..+ |.+..+...+..+..+.+
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888899999999999999999999999999999864 556666666655544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=9.3e-07 Score=63.51 Aligned_cols=94 Identities=9% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHHHHH
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD-------DASYKFM 269 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l 269 (407)
+..++..|...|++++|+..|.+.++.+ +.+..++..++.+|.+.|++++|...++++++..+.+ ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344555555555555555555555532 2344455555555555555555555555555411111 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015416 270 MKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+..+...+++++|+..|++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4455555555555555555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.50 E-value=3e-06 Score=64.06 Aligned_cols=119 Identities=12% Similarity=0.027 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC------------CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS------------DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS 78 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 78 (407)
..+.-....+.+.|++++|+..|.......+.... ...+|+.+..+|.+.|++++|+..++.++..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34566677888899999999999887764222111 11335567777788888888888888888776
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 79 SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
|.+..+|..++.++...|++++|...|.++++..|. +..+...+..+..+.+
T Consensus 95 --p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~------n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 95 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ------NKAARLQIFMCQKKAK 146 (168)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHH
Confidence 456777777888888888888888888888776543 4445555544444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=1.7e-06 Score=65.61 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
.+......+...|++.+|+..|.++++. ............. ... -+.....+..++.+|.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~-------~~~-~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG-------AKL-QPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH-------GGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH-------HHh-ChhhHHHHHHHHHHHH
Confidence 3455666777788888888888776541 0000000111100 000 0123457788889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
+.|++++|+..+.++++..|.++.+|..++.++...|++++|+..|+++++.. |.+......+..+.
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVK 155 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999863 44555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=1.3e-06 Score=66.18 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhC-------------CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLG-------------GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
+......+...|++++|+..|.++.+..+ -.+.....|..++.++.+.|++++|+..|+++++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-- 107 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 107 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--
Confidence 44556677788899999888887754200 011233456667777777777777777777777766
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
|.+..+|..++.++...|++++|+..|+++++..+.
T Consensus 108 -p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 108 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 446677777777777777777777777777776543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=3.6e-06 Score=62.45 Aligned_cols=127 Identities=9% Similarity=-0.053 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
..+..-+..+.+.|++.+|+..|.+.+..- +.... . .+......... ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~-~~~~~~~~~~~------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------W-DDQILLDKKKN------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------C-CCHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------h-hhHHHHHhhhh------HHHHHHhhHHHHH
Confidence 456667888999999999999999987642 11000 0 00000000000 0124677788888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKA 272 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 272 (407)
.+.|++++|+..+..+++.. +.+..+|..++.++...|++++|...|++.....|.+..+...+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888888754 44677888888888888899999888888888666676666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.30 E-value=2.3e-05 Score=59.51 Aligned_cols=134 Identities=7% Similarity=0.032 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
....+......|++++|...|.+.+.. .+.... .......-+...-..+... ....+..++..+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 344556778899999999999999874 222110 0001111111112222211 23477889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFVKGEL 309 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 309 (407)
.|++++|+..+++++...|.+...|..++.+|...|+..+|++.|+++... .|+.|...+....-..+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il 151 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 151 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 999999999999999988999999999999999999999999999998553 47888887655444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.23 E-value=3.1e-05 Score=58.74 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS-----DKGVNPDEYT 196 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 196 (407)
.+..++.++...|++++|+..+++++... |-+...|..++.+|...|++.+|++.|+++. +.|+.|+..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45556666666666666666666666654 5666666666666666666666666666653 2466666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=3.6e-06 Score=61.74 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=40.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN----------GKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+.+.+++|+..|+.+++.+ |.+..++..+..+|... +.+++|+..|+++++..|. +..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~------~~~a~~ 79 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch------hhHHHh
Confidence 3344566666666666555 33455555555555432 3346677777777766544 555666
Q ss_pred HHHHHHHhcC
Q 015416 129 VMADGYCGQG 138 (407)
Q Consensus 129 ~l~~~~~~~g 138 (407)
.++.+|...|
T Consensus 80 ~lG~~y~~~g 89 (145)
T d1zu2a1 80 CIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHcc
Confidence 6766666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=4.5e-06 Score=61.20 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ----------GRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
|-+.+.+++|+..|+.+++..|. +..++..+..+|... +.+++|+..|++.++.. |.+..+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~ 79 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHh
Confidence 44566799999999999998766 777888888888754 44577888888888765 55677888
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 164 NLIDQLCKNGM-----------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 164 ~l~~~~~~~g~-----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
.++.+|...|+ +++|.+.|+++++ +.|+...|...+..+ .++.+++.+..+.|
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 88888876543 4666777777666 455554444443333 34555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.18 E-value=1.7e-06 Score=70.43 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=65.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.+.|++++|+..|++.++.+ |.+...+..++.+|+..|++++|.+.|+...+..+. +...+..+...+...
T Consensus 7 L~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPGASQLRHLVKAA 77 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHhc
Confidence 34566777777777776665 446666666677777777777777777766665433 333444444444333
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
+..+++...+......+-+++...+...+..+...|+.++|...+.++.+
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33332222111111111122233344445556667777777777777665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0012 Score=54.87 Aligned_cols=271 Identities=11% Similarity=0.059 Sum_probs=149.9
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
||..--..+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.- +..+|
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~ 72 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKAN--------STRTW 72 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHcC--------CHHHH
Confidence 455555667788889999999999997553 36788889999999999988876542 46688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..+...+........+. +....... .+.....++..|-..|.+++...+++...... ..+...++.++.
T Consensus 73 k~~~~~l~~~~e~~la~-----i~~~~~~~-----~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~ 141 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLAQ-----MCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 141 (336)
T ss_dssp HHHHHHHHHTTCHHHHH-----HTTTTTTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHH-----HHHHHhhc-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHH
Confidence 88888888877665432 22221111 33345678889999999999999999876543 467778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPD--------EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
.|++.+ .++..+.++..-. ...+. ...|..++..|.+.|+++.|..++ .++ .++..-....+..+
T Consensus 142 lyak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~ 214 (336)
T d1b89a_ 142 LYSKFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDII 214 (336)
T ss_dssp HHHTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHH
T ss_pred HHHHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHH
Confidence 888765 3444444433311 11111 011333444455555555444332 121 22322334445556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH-------------HHHHHHhcCCCCCcHHHHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE-------------IVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-------------~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
.+.++.+...++....++. ++.....++......-+..+.++ +++..... -+..+...+.
T Consensus 215 ~k~~N~e~~~~~i~~yL~~---~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~----n~~~vn~al~ 287 (336)
T d1b89a_ 215 TKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNESLN 287 (336)
T ss_dssp HHCSSTHHHHHHHHHHHHH---CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHHHH
T ss_pred HccCChHHHHHHHHHHHHc---CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc----ChHHHHHHHH
Confidence 6666666555555554442 22334444444444444444444 44443332 1345777777
Q ss_pred HHHhhcCcHHHHHHHH
Q 015416 307 GELSKEGREEEVVKLM 322 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~ 322 (407)
..|...++++.-.+.+
T Consensus 288 ~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 288 NLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHhCcchhHHHHHHH
Confidence 7777777765444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0021 Score=53.37 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=142.5
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
||..-...++..|.+.|.++.|..+|..+. -|..++.++.+.+++..|.+++.+.. +.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~~-----------~~ 69 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKAN-----------ST 69 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHHT-----------CH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHcC-----------CH
Confidence 455555668888999999999999997643 36678888899999999988887552 55
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.+|..+...+.+.....-+ .+.......+......++..|-..|.+++...+++..... -.++...++.++..|
T Consensus 70 ~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 70 RTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 143 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHH
Confidence 5888888898888776543 2223333456666778899999999999999999988754 255677888899988
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNL--------AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
++.+ .++..+.+..... .+.+.. ..|..++..|.+.|.++.|..++-. .+++..-....+..+.+.
T Consensus 144 ak~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 144 SKFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQFKDIITKV 217 (336)
T ss_dssp HTTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHHHHHHHHHC
T ss_pred HHhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHHHHHHHHcc
Confidence 8864 3444444433211 111110 1233445555555555555444332 444554556666777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
++.+...++....++. .| .....++......-+..+.++.+++
T Consensus 218 ~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 218 ANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp SSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHh
Confidence 7777766666666553 22 3334444445555555555555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.05 E-value=1.8e-05 Score=58.76 Aligned_cols=103 Identities=22% Similarity=0.235 Sum_probs=55.1
Q ss_pred hHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCC---------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 015416 49 VYGSL--MKGYFMKGMEEEAMECYNEAVGENSSVKM---------SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP- 116 (407)
Q Consensus 49 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 116 (407)
+|..+ +..+.+.|++++|+..|++++...+..+. ...+|+.+..+|.+.|++++|...+++.++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 44455667777777777777654332211 1345666777777777777777777766543110
Q ss_pred ----CCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 117 ----PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 117 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+........+++.+..+|...|++++|+..|++.+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234455556666666666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.98 E-value=5.2e-06 Score=67.43 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
+.|++++|+..+++.++..|. +...+..++..|+..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456666666666666665544 5556666666666666666666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.97 E-value=2.3e-05 Score=58.10 Aligned_cols=105 Identities=16% Similarity=0.025 Sum_probs=80.1
Q ss_pred HHHHHHH--HHHHHhcCChhhHHHHHHHHHHhhCCccCC---------cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 10 PVVYSYL--MLGFVRDGDSDGVFRLFEELKEKLGGVVSD---------GVVYGSLMKGYFMKGMEEEAMECYNEAVGENS 78 (407)
Q Consensus 10 ~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 78 (407)
..+|..+ ...+.+.|++++|+..|++.++..+..+.. ...|+.++.+|...|++++|+..+++++...+
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3466666 556678899999999999999875443321 35788999999999999999999999875321
Q ss_pred ---CCCC-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 79 ---SVKM-----SAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 79 ---~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
...+ ...++..+..+|...|++++|+..|++.++..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0111 12356778999999999999999999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=5e-05 Score=50.75 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---VK-MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
..+..++..+.+.|+++.|+..|+++++..+. .. ....++..+..++.+.|++++|+..++++++..|.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 34445666666666666666666666543211 01 11345566666666666666666666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00027 Score=47.03 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKL------KM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..++..+.+.|++++|...|++..+.. .+ ...++..++.++.+.|++++|+..++++++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34455556666666666666666555411 01 1345566666666666666666666666664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.53 E-value=0.0016 Score=46.14 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHhCC
Q 015416 62 MEEEAMECYNEAVGEN 77 (407)
Q Consensus 62 ~~~~A~~~~~~~~~~~ 77 (407)
++++|+.+|++..+.+
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3444445554444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.52 E-value=0.0013 Score=46.66 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=79.8
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cCC
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NGK 99 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 99 (407)
.|+++|+.+|++..+. + ++..+..|.. ....+.++|+.+|++..+.+ +...+..|...|.. ..+
T Consensus 7 kd~~~A~~~~~kaa~~--g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~~d 74 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL--N---EMFGCLSLVS--NSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKD 74 (133)
T ss_dssp HHHHHHHHHHHHHHHT--T---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCC
T ss_pred cCHHHHHHHHHHHHHC--C---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccchh
Confidence 3688999999998886 5 4455555543 34568889999999988876 45666667766665 456
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
.++|.+.|++..+.+ ++.....|..+|.. ..+..+|.++|++..+.|
T Consensus 75 ~~~A~~~~~~aa~~g--------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 75 LRKAAQYYSKACGLN--------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhhhhccC--------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 788888888888776 44466667777665 457778888888777766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.03 E-value=0.11 Score=35.08 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=88.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.-.|..++..+++.+.... .+..-|+.++--....-+-+-..++++..-+. +.. ..+++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHHH
Confidence 3456666666666666542 24445555555555555555555555444321 110 1233333333
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..+-.+ ..+...+...+..+..+|+-+.-.++++.+.+.. .++++....++.+|.+.|...++-+++.+.-+.|
T Consensus 77 ~C~~~~----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333222 2244556667788888999999999998877743 7888888889999999999999999999988887
Q ss_pred HHHH
Q 015416 330 AEAK 333 (407)
Q Consensus 330 ~~~~ 333 (407)
.+..
T Consensus 151 ~KeA 154 (161)
T d1wy6a1 151 EKEA 154 (161)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 5543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.11 Score=35.20 Aligned_cols=67 Identities=6% Similarity=0.012 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKMDD-ASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.|+..+-...+.++.++.+ .++++.+|+.+....+.+. ..+..+..+|.+.|++++|.+.++.+++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3455566666666665543 4467777777766544443 56667777777777777777777777764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.8 Score=39.18 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLV----GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
.+.+.+...+....... ..+..-+..+- ..+...+..+.+..++...... ..+.....-.+......+++..+.
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-SQSTSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-ccchHHHHHHHHHHHHcCChHHHH
Confidence 56778888888876542 23333332222 2233456677788877776653 345555555666667788999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..+..+... .........-+++++...|+.++|...+..+...
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 999887543 2334455567889999999999999999988653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.18 Score=34.20 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 259 LKMDDASYKFMMKALSDGG---KLDEILEIVGGILDDGGIEFSE-ELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
..+...+-.....++.++. +.++++.+|+.+.... +.+. ..+..|+-+|.+.|++++|.+.++++.+..+.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3467778888888888764 4578999999998753 3343 57778889999999999999999999876543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.68 E-value=0.36 Score=32.57 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=80.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.-.|..++..+++.+..... +..-||-++--....-+-+-..+.++.+-+.- |. ..+
T Consensus 13 ildG~ve~Gveii~k~~~ss-----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F--------Dl----------s~C 69 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF--------DL----------DKC 69 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS--------CG----------GGC
T ss_pred HHhhhHHhHHHHHHHHcccC-----CccccceeeeecccccchHHHHHHHHHHhhhc--------Cc----------hhh
Confidence 44577777777777776543 33344444444444455555555555543321 11 122
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
+++......+-.+- .+....+..+.....+|+-++-.++++.+.+. -+|++.....+..+|.+.|...++-+++
T Consensus 70 ~Nlk~vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell 143 (161)
T d1wy6a1 70 QNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 143 (161)
T ss_dssp SCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 23333332222221 23445555666777777777777777776664 3667777777777888888887777777
Q ss_pred HHHHHCCCC
Q 015416 218 RKMVDSGLR 226 (407)
Q Consensus 218 ~~~~~~~~~ 226 (407)
.++.+.|++
T Consensus 144 ~~ACe~G~K 152 (161)
T d1wy6a1 144 IEACKKGEK 152 (161)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHHhHH
Confidence 777777653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=2.2 Score=36.21 Aligned_cols=291 Identities=13% Similarity=0.059 Sum_probs=151.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
..+..+.+.++++..+..+ +..+++...-...+.+....|+.+.|...+..+-..+ ......+..+...+
T Consensus 77 ~~l~~L~~~~~w~~~~~~~-------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~---~~~p~~c~~l~~~~ 146 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFS-------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG---KSQPNACDKLFSVW 146 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHC-------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS---SCCCTHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHhc-------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 3455667778776544322 2344566666677888888999999988888777665 22344455555555
Q ss_pred HhcCCHH--HHHHHHHHHHhcCCC----------CCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 95 CNNGKFD--EALKLFDRMKNEHNP----------PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 95 ~~~~~~~--~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
.+.|... ...+-+..+...+.. |.. ........+..... ...+.... ... +++....
T Consensus 147 ~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~---~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~~~~~ 215 (450)
T d1qsaa1 147 RASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD---YQTIASAIISLANN---PNTVLTFA---RTT--GATDFTR 215 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG---GHHHHHHHHHHHHC---GGGHHHHH---HHS--CCCHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh---HHHHHHHHHHHHhC---hHhHHHHH---hcC--CCChhhh
Confidence 5544432 222223322222100 000 11112222222221 11111111 111 2333333
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 163 NNLIDQLCK--NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA----CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 163 ~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
..+..++.+ ..+.+.+..++....... ..+...+..+... ....+..+.+...+......+ .+.......+
T Consensus 216 ~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~ 292 (450)
T d1qsaa1 216 QMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHH
Confidence 333333332 346777877777765432 2222222222222 223455666777776666543 3444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCC---------
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----------GIE--------- 296 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~--------- 296 (407)
......+++..+...+..+.........-..-+++++...|+.+.|...|..+.... |.+
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~ 372 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP 372 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCC
Confidence 555667788888888877655333345555677788888888888888888765421 110
Q ss_pred C--cH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 297 F--SE----ELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 297 ~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
. .. ..-..-+..+...|+..+|...+..+....
T Consensus 373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~ 411 (450)
T d1qsaa1 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK 411 (450)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC
Confidence 0 00 001122456778888888888888776544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.17 E-value=1.4 Score=27.99 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=18.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+..+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 29 mN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 29 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.91 E-value=1.7 Score=30.30 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=76.8
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
|.+-....|..-..-+...|++.+|-.+--..... +-.+..|.+.+-.+-...|+..--+.+|..+.+.+.-
T Consensus 26 ~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~g---iLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~~L----- 97 (157)
T d1bpoa1 26 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG---ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQL----- 97 (157)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG---SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCC-----
T ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcc---cccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCCC-----
Confidence 55556667777888888889998888876554432 3445556555544444456666677777777776532
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
+..--.-++..-...|+.+-..+++.+=.- ..+...-. ++ +.-+..-|..+|.+..
T Consensus 98 -N~~ESlEl~r~vL~q~r~~lve~Wl~e~KL---~~SEeLGD-lv----~~~d~~lAl~IY~ka~ 153 (157)
T d1bpoa1 98 -NKYESLELCRPVLQQGRKQLLEKWLKEDKL---ECSEELGD-LV----KSVDPTLALSVYLRAN 153 (157)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCS---CCCHHHHH-HH----HHHCSHHHHHHHHHHC
T ss_pred -chHHhHHHHHHHHhcCcHHHHHHHHHcCCc---cCcHHHHH-HH----HHcCHHHHHHHHHHcc
Confidence 333333456677777888877777776432 23333221 22 2235566777776553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.94 E-value=2.8 Score=26.55 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 244 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+.-+..+-++.+.. ..-|++....+.+++|.+.+++..|+++|+.+..+.+ ++...|..+.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 44456666666666 6778888999999999999999999999998887643 34556666543
|