Citrus Sinensis ID: 015484
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 406 | 2.2.26 [Sep-21-2011] | |||||||
| O22469 | 424 | WD-40 repeat-containing p | yes | no | 0.972 | 0.931 | 0.742 | 0.0 | |
| O22468 | 415 | WD-40 repeat-containing p | no | no | 0.972 | 0.951 | 0.746 | 0.0 | |
| O22467 | 424 | Histone-binding protein M | no | no | 0.948 | 0.908 | 0.567 | 1e-131 | |
| O22466 | 424 | WD-40 repeat-containing p | N/A | no | 0.945 | 0.905 | 0.565 | 1e-130 | |
| Q10G81 | 428 | Histone-binding protein M | yes | no | 0.955 | 0.906 | 0.562 | 1e-129 | |
| Q6INH0 | 425 | Histone-binding protein R | N/A | no | 0.938 | 0.896 | 0.557 | 1e-124 | |
| Q60972 | 425 | Histone-binding protein R | yes | no | 0.938 | 0.896 | 0.554 | 1e-123 | |
| Q09028 | 425 | Histone-binding protein R | yes | no | 0.938 | 0.896 | 0.554 | 1e-123 | |
| Q3MHL3 | 425 | Histone-binding protein R | yes | no | 0.938 | 0.896 | 0.554 | 1e-123 | |
| Q5RF92 | 425 | Histone-binding protein R | yes | no | 0.938 | 0.896 | 0.554 | 1e-123 |
| >sp|O22469|MSI3_ARATH WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana GN=MSI3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/400 (74%), Positives = 352/400 (88%), Gaps = 5/400 (1%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP
Sbjct: 1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGSAGDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQL ELDAEDGPPELLFSH
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400
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Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22468|MSI2_ARATH WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/398 (74%), Positives = 345/398 (86%), Gaps = 3/398 (0%)
Query: 5 EQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKF 64
+++ + QVEE+F+VWKKNTPFLYDL++SHPLEWPSLTVHWVPS P PY AD F VHK
Sbjct: 6 KEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKL 65
Query: 65 VLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCM 124
+LGTHTS +FLM+AD V PT ++E +GG N++P IPKVEI Q+IRVDGEVNRARCM
Sbjct: 66 ILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCM 125
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183
PQKP LVG KTS CEV++FD AK A K Q +CDPDLRL GHDKEGYGLSWSPFKEGYL+
Sbjct: 126 PQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLVGHDKEGYGLSWSPFKEGYLL 185
Query: 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW 243
SGS D KICLWDVSA QDKV++AM VYE HES + DVSWH+KNENLFGSAG+D +L+IW
Sbjct: 186 SGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIW 245
Query: 244 DLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE 303
D RTNQ Q +VK HE+EVNYLSFNP+NEWVLATASSD+TVALFD+RK+ PLH++SSH
Sbjct: 246 DTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEG 305
Query: 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSHGGHKAK 361
EVFQVEWDPNHETVLASS +DRRLMVWDLNR+G+EQL ELDAEDGPPELLFSHGGHKAK
Sbjct: 306 EVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAK 365
Query: 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
ISDF+WNKN+PWVI+SVA+DN++QVWQM +SIYRD++D
Sbjct: 366 ISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYRDEED 403
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Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22467|MSI1_ARATH Histone-binding protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/400 (56%), Positives = 292/400 (73%), Gaps = 15/400 (3%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLTV W+P +P D ++V K +LGTHTSE
Sbjct: 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD--YSVQKMILGTHTSE 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIRVDGEVNRARCM 124
PN+LM+A LP D+ES +++ KV+I Q+I DGEVNRAR M
Sbjct: 75 SEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYM 134
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT + EVYVFD +K K D C+PDL+L+GH EGYGLSWS FK+G+L
Sbjct: 135 PQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHL 194
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242
+SGS D +ICLWD++A ++K +DA +++AHE VVEDV+WHL++E LFGS GDD L+I
Sbjct: 195 LSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
Query: 243 WDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS 299
WDLR+ ++ Q V AH EVN L+FNP+NEWV+AT S+D TV LFD+RK++ LH
Sbjct: 255 WDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFD 314
Query: 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359
SH EEVFQV W+P +ET+LAS RRLMVWDL+RI +EQ DAEDGPPELLF HGGH
Sbjct: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHT 374
Query: 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
+KISDFSWN + WVISSVA+DN +Q+WQM ++IY D+DD
Sbjct: 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414
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Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair, and the fertilization independent seed (FIS) complex, a polycomb group protein complex which is required to maintain the transcriptionally repressive state of homeotic genes throughout development. Required for several aspects of plant development including normal leaf expansion, correct development of flowers, normal endosperm development, repression of parthenogenetic seed development and repression of floral homeotic genes in leaf tissue. Also required for the recruitment of chromosomal DNA into heterochromatic chromocenters. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22466|MSI1_SOLLC WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/403 (56%), Positives = 292/403 (72%), Gaps = 19/403 (4%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLTV W+P +P D ++V K +LGTHTSE
Sbjct: 17 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD--YSVQKMILGTHTSE 74
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
+ PN+LM+A LP +D+E S GG KV+I Q+I DGEVNRAR
Sbjct: 75 NEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFG--CANGKVQIIQQINHDGEVNRAR 132
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S EVYVFD +K K D C+PDLRL+GH EGYGLSWS FK+G
Sbjct: 133 YMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQG 192
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
+L+SGS D+ ICLWD++A ++K ++AM +++ HE VVEDV+WHL++E LFGS GDD L
Sbjct: 193 HLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
Query: 241 MIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
+WDLRT + Q V AH+ EVN L+FNP+NEWV+AT S+D TV LFD+RK++ LH
Sbjct: 253 HVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHT 312
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
L H EEVFQV W+P +ET+LAS RRLMVWDL+RI +EQ DAEDGPPELLF HGG
Sbjct: 313 LDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG 372
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDF 400
H +KISDFSWN + WV++SVA+DN +Q+WQM ++IY D+DD
Sbjct: 373 HTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDL 415
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Solanum lycopersicum (taxid: 4081) |
| >sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica GN=MSI1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/409 (56%), Positives = 292/409 (71%), Gaps = 21/409 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLTV W+P +P D +V K VLGTHTS+
Sbjct: 21 INEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKD--HSVQKMVLGTHTSD 78
Query: 73 DFPNFLMIADAVLPTKDSESN----------VGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
+ PN+LM+A LP D+E++ +GG KV+I Q+I DGEVNRAR
Sbjct: 79 NEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGA--ASGKVQIVQQINHDGEVNRAR 136
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ ++ TKT S EVYVFD +K K D C+PDLRLKGH+ EGYGLSWS FKEG
Sbjct: 137 YMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEG 196
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
+L+SGS D +ICLWD+ A +++K +DA+ +++ H+ VVEDV+WHL++E LFGS GDD L
Sbjct: 197 HLLSGSDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNL 256
Query: 241 MIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
+IWDLR+ + Q V AH+ EVN L+FNP+NEWV+AT S+D TV LFD+RK+ LH
Sbjct: 257 LIWDLRSPVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKIDTSLHT 316
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
H EEVFQV W P +ET+LAS RRLMVWDL+RI EQ DAEDGPPELLF HGG
Sbjct: 317 FDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGG 376
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDFLATTDD 406
H +KISDFSWN + WVI+SVA+DN +Q+WQM ++IY D+DD TDD
Sbjct: 377 HTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDD--VPTDD 423
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Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism such as the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/402 (55%), Positives = 286/402 (71%), Gaps = 21/402 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT SC+V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 NLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY D+D
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Xenopus laevis (taxid: 8355) |
| >sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 286/402 (71%), Gaps = 21/402 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY D+D
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Mus musculus (taxid: 10090) |
| >sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 286/402 (71%), Gaps = 21/402 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY D+D
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Homo sapiens (taxid: 9606) |
| >sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 286/402 (71%), Gaps = 21/402 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY D+D
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Bos taurus (taxid: 9913) |
| >sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/402 (55%), Positives = 285/402 (70%), Gaps = 21/402 (5%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS
Sbjct: 17 INEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTS- 73
Query: 73 DFPNFLMIADAVLPTKDSE----------SNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
D N L+IA LP D++ GG V K+EI KI +GEVNRAR
Sbjct: 74 DEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGS--VSGKIEIEIKINHEGEVNRAR 131
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--QDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
MPQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 181 YLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+L+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 240 LMIWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
LMIWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HG
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
GH AKISDFSWN N+PWVI SV++DN +QVWQM ++IY D+D
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Pongo abelii (taxid: 9601) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 406 | ||||||
| 224103193 | 406 | nucleosome/chromatin assembly factor gro | 0.975 | 0.975 | 0.800 | 0.0 | |
| 85725391 | 410 | putative retinoblastoma binding protein | 0.992 | 0.982 | 0.773 | 0.0 | |
| 224080624 | 417 | nucleosome/chromatin assembly factor gro | 0.980 | 0.954 | 0.787 | 0.0 | |
| 255587862 | 415 | retinoblastoma-binding protein, putative | 0.943 | 0.922 | 0.803 | 0.0 | |
| 15236251 | 424 | histone-binding protein RBBP4 [Arabidops | 0.972 | 0.931 | 0.742 | 0.0 | |
| 297836388 | 415 | hypothetical protein ARALYDRAFT_480561 [ | 0.982 | 0.961 | 0.749 | 0.0 | |
| 297798420 | 405 | hypothetical protein ARALYDRAFT_912880 [ | 0.982 | 0.985 | 0.735 | 0.0 | |
| 27754479 | 424 | putative WD-40 repeat protein (MSI3) [Ar | 0.972 | 0.931 | 0.742 | 0.0 | |
| 21593624 | 415 | putative WD-40 repeat protein, MSI2 [Ara | 0.982 | 0.961 | 0.744 | 0.0 | |
| 2394233 | 424 | WD-40 repeat protein [Arabidopsis thalia | 0.972 | 0.931 | 0.737 | 0.0 |
| >gi|224103193|ref|XP_002312960.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222849368|gb|EEE86915.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/401 (80%), Positives = 357/401 (89%), Gaps = 5/401 (1%)
Query: 4 EEQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVP-SPPQPYSADPT-FAV 61
++QD DQ++EEF+VWKKNTPFLYD ++SHPLEWPSLTV WVP + P P+S DP+ F+V
Sbjct: 6 DDQDVGQDQLDEEFSVWKKNTPFLYDFVISHPLEWPSLTVQWVPLATPLPHSTDPSSFSV 65
Query: 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNV--GGKNENPVIPKVEIAQKIRVDGEVN 119
HK VLGTHTS+DFPN+L+IADAVLPT +E+ + G + N VIPKVEI QKIRVDGEVN
Sbjct: 66 HKLVLGTHTSDDFPNYLLIADAVLPTSVAEAKIDASGSSTNSVIPKVEITQKIRVDGEVN 125
Query: 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAE-KQQDDCDPDLRLKGHDKEGYGLSWSPFK 178
RAR MPQ P +VG KTS CEVYVFD KQAE KQ+D CDPDLRL GHDKEGYGLSWSPFK
Sbjct: 126 RARSMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLSWSPFK 185
Query: 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238
+GYLVSGSHDN+ICLWDVSA+AQDKV+ A+ VYEAHESVVEDVSWHLKNENLFGS GDDC
Sbjct: 186 QGYLVSGSHDNRICLWDVSAVAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGSVGDDC 245
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
QL+IWDLRTNQ Q VKAHEKE+NYLSFNPYNEW+LATASSD TV LFDMRK+TVPLH L
Sbjct: 246 QLIIWDLRTNQIQHSVKAHEKEINYLSFNPYNEWILATASSDATVGLFDMRKLTVPLHAL 305
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
S+ EEVFQVEWDPNHETVLASSADDRRL VWDLNRIG+EQLELDA+DGPPELLFSHGGH
Sbjct: 306 RSNIEEVFQVEWDPNHETVLASSADDRRLNVWDLNRIGEEQLELDADDGPPELLFSHGGH 365
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
KAKISDFSWNKN+PWVISSVADDNT+QVWQM +SIYRD+DD
Sbjct: 366 KAKISDFSWNKNEPWVISSVADDNTLQVWQMAESIYRDEDD 406
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|85725391|gb|ABC79303.1| putative retinoblastoma binding protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/407 (77%), Positives = 361/407 (88%), Gaps = 4/407 (0%)
Query: 3 AEEQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVH 62
A + + + +QVEEEF+VWKKNTPFLYDL++SHPLEWPSLTVHWVPS P PY DPTF VH
Sbjct: 2 AGDSEMNPEQVEEEFSVWKKNTPFLYDLVISHPLEWPSLTVHWVPSSPTPYGPDPTFNVH 61
Query: 63 KFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRAR 122
K VLGTHTS P+FLMIADAVLPT SESN+ KN++PVIPKVEI QK+RVDGEVNRAR
Sbjct: 62 KLVLGTHTSGGAPDFLMIADAVLPTLASESNIAAKNDDPVIPKVEITQKMRVDGEVNRAR 121
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQA--EKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG 180
CMPQ P ++G KTS +V+VFD AKQA ++Q+ DC DLRL+GH+KEGYGLSWSPFKEG
Sbjct: 122 CMPQNPVIIGAKTSGSDVFVFDYAKQAAAKEQEGDCVADLRLRGHEKEGYGLSWSPFKEG 181
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
YL+SGS D+KICLWD+S+ QDKV+DA HVYEAHESVVEDVSWHLKNEN+FGS+GDDC L
Sbjct: 182 YLLSGSQDHKICLWDLSSWPQDKVLDATHVYEAHESVVEDVSWHLKNENIFGSSGDDCML 241
Query: 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS 300
MIWDLRTNQT+ RVKAH++E+NYLSFNPYNEWVLATASSD+TV LFD+RK+TVPLH+LSS
Sbjct: 242 MIWDLRTNQTEHRVKAHDREINYLSFNPYNEWVLATASSDSTVGLFDVRKLTVPLHVLSS 301
Query: 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSHGGH 358
H+ EVFQVEWDPNHETVLASS DDRRLM+WDLNRIG+EQL ELDA+DGPPELLFSHGGH
Sbjct: 302 HSGEVFQVEWDPNHETVLASSGDDRRLMIWDLNRIGEEQLEIELDADDGPPELLFSHGGH 361
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDFLATTD 405
KAKISDFSWNKN+PWVISSVA+DNT+QVWQ+ +SIYRD+DD D
Sbjct: 362 KAKISDFSWNKNEPWVISSVAEDNTLQVWQLAESIYRDEDDTQTAED 408
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080624|ref|XP_002306184.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222849148|gb|EEE86695.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/405 (78%), Positives = 357/405 (88%), Gaps = 7/405 (1%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVP-SPPQPYSADP 57
MAA E Q+A DQ++EEF+VWKKNTP LYDL++SHPLEWPSLTV WVP + P P+ DP
Sbjct: 1 MAAAEDDQEAGQDQLDEEFSVWKKNTPVLYDLVISHPLEWPSLTVQWVPLAAPLPHPTDP 60
Query: 58 T-FAVHKFVLGTHTSEDFPNFLMIADAVLPTK--DSESNVGGKNENPVIPKVEIAQKIRV 114
+ F++HK VLGTHTS+DFPNFLM+ADAVLPT D++ + + + VIPKVEI QKIRV
Sbjct: 61 SSFSIHKLVLGTHTSDDFPNFLMVADAVLPTSVADAKIDTSCSSADSVIPKVEITQKIRV 120
Query: 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAE-KQQDDCDPDLRLKGHDKEGYGLS 173
DGEVNRARCMPQ P +VG KTS CEVYVFD KQAE KQ+D CDPDLRL GHDKEGYGLS
Sbjct: 121 DGEVNRARCMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLS 180
Query: 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS 233
WSPFK+GYLVSGSHDN+ICLWDVS AQDKV+ A+ VYEAHESVVEDVSWHLKNENLFGS
Sbjct: 181 WSPFKQGYLVSGSHDNRICLWDVSGNAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGS 240
Query: 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293
GDDC+L+IWD+RTNQTQ VKAH+KE+NYLSFNPYNEW+LATASSD TV LFDMRK+TV
Sbjct: 241 VGDDCRLVIWDMRTNQTQHSVKAHKKEINYLSFNPYNEWILATASSDATVGLFDMRKLTV 300
Query: 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353
PLH LSSHTEEVFQVEWDPNHETVLASSADDRRL +WDLNRIG+EQLELDA+DGPPELLF
Sbjct: 301 PLHALSSHTEEVFQVEWDPNHETVLASSADDRRLNIWDLNRIGEEQLELDADDGPPELLF 360
Query: 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
SHGGHKAKISDFSWNK++ WVISSVADDNT+QVWQM +SIY DDD
Sbjct: 361 SHGGHKAKISDFSWNKDESWVISSVADDNTLQVWQMAESIYGDDD 405
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587862|ref|XP_002534420.1| retinoblastoma-binding protein, putative [Ricinus communis] gi|223525325|gb|EEF27964.1| retinoblastoma-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/386 (80%), Positives = 348/386 (90%), Gaps = 3/386 (0%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVP-SPPQPYSADPT-FAVHKFVLGTHT 70
++EEF+VWKKNTPFLYDL++SHPLEWPSLTVHW+P + P P+ +P+ F+VHK VLGTHT
Sbjct: 18 LDEEFSVWKKNTPFLYDLVISHPLEWPSLTVHWLPLAAPLPHPTNPSSFSVHKLVLGTHT 77
Query: 71 SEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNL 130
S+DFPNFLMIADAVLP + ++ K+E+ +IPKVEI+QKIRVDGEVNRARCMPQ P
Sbjct: 78 SDDFPNFLMIADAVLPIRGAQPKFDAKSEDSLIPKVEISQKIRVDGEVNRARCMPQNPAF 137
Query: 131 VGTKTSSCEVYVFDCAKQAEKQQDD-CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189
+ KTS C+VYVFD KQ+E+QQDD CDPDL L+GHDKEGYGLSWSPFK GYLVSGSHDN
Sbjct: 138 IAAKTSGCDVYVFDSTKQSERQQDDGCDPDLTLRGHDKEGYGLSWSPFKPGYLVSGSHDN 197
Query: 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249
KICLWDVSA+A+DKV+D+MHVYEAH+SVVEDVSWHLKNEN+FGS GDDC LMIWDLRTNQ
Sbjct: 198 KICLWDVSAVAKDKVLDSMHVYEAHDSVVEDVSWHLKNENIFGSVGDDCMLMIWDLRTNQ 257
Query: 250 TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309
TQ +KAHEKEVNYLSFNPYNEW+LATASSD TV LFDMRK+ PLH+LS HTEEVFQVE
Sbjct: 258 TQHSIKAHEKEVNYLSFNPYNEWILATASSDATVGLFDMRKLIAPLHVLSGHTEEVFQVE 317
Query: 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369
WDPNHETVLAS+ADDRRL VWDLNRIG+EQLELDAEDGPPELLFSHGGHKAKISDFSWNK
Sbjct: 318 WDPNHETVLASTADDRRLNVWDLNRIGEEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 377
Query: 370 NDPWVISSVADDNTVQVWQMTDSIYR 395
NDPWVISSVADDNT+QVWQM + IYR
Sbjct: 378 NDPWVISSVADDNTLQVWQMDEGIYR 403
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236251|ref|NP_195231.1| histone-binding protein RBBP4 [Arabidopsis thaliana] gi|12644054|sp|O22469.2|MSI3_ARATH RecName: Full=WD-40 repeat-containing protein MSI3 gi|2924516|emb|CAA17770.1| WD-40 repeat protein (MSI3) [Arabidopsis thaliana] gi|7270456|emb|CAB80222.1| WD-40 repeat protein (MSI3) [Arabidopsis thaliana] gi|57222170|gb|AAW38992.1| At4g35050 [Arabidopsis thaliana] gi|109134167|gb|ABG25081.1| At4g35050 [Arabidopsis thaliana] gi|332661055|gb|AEE86455.1| histone-binding protein RBBP4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/400 (74%), Positives = 352/400 (88%), Gaps = 5/400 (1%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP
Sbjct: 1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGSAGDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQL ELDAEDGPPELLFSH
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836388|ref|XP_002886076.1| hypothetical protein ARALYDRAFT_480561 [Arabidopsis lyrata subsp. lyrata] gi|297331916|gb|EFH62335.1| hypothetical protein ARALYDRAFT_480561 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/403 (74%), Positives = 350/403 (86%), Gaps = 4/403 (0%)
Query: 1 MAAE-EQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
MA E ++D +DQVEE+F+VWKKNTPFLYDL++SHPLEWPSLTVHWVPS P PY+ADP F
Sbjct: 1 MADEGKEDTGMDQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPSPYAADPYF 60
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVN 119
VHK +LGTHTS +FLM+AD V PT + E +GG N++P+IPKVEI QKIRVDGEVN
Sbjct: 61 GVHKLILGTHTSGSAQDFLMVADVVTPTPNGEPGLGGPNQDPIIPKVEIRQKIRVDGEVN 120
Query: 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPFK 178
RARCMPQKP LVG KTS CEV++FD AK A Q +CDPDLRL GHDKEGYGLSWSPFK
Sbjct: 121 RARCMPQKPTLVGAKTSGCEVFLFDYAKHAATPQTSECDPDLRLVGHDKEGYGLSWSPFK 180
Query: 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238
EGYL+SGS D KICLWDVSA QDKV++AM VYE HES + DVSWH+KNENLFGSAG+D
Sbjct: 181 EGYLLSGSQDKKICLWDVSATPQDKVLNAMFVYEGHESSIADVSWHMKNENLFGSAGEDG 240
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
+L+IWD RTNQ Q +VK HE+EVNYLSFNP+NEWVLATASSD+TVALFD+RK+ PLH++
Sbjct: 241 RLVIWDTRTNQMQHQVKIHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVM 300
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSHG 356
SSH EVFQVEWDPNHETVLASS +DRRLMVWDLNR+G+EQL ELDAEDGPPELLFSHG
Sbjct: 301 SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG 360
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
GHKAKISDF+WN+N+PWVI+SVA+DN++QVWQM +SIYRD++D
Sbjct: 361 GHKAKISDFAWNENEPWVIASVAEDNSLQVWQMAESIYRDEND 403
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798420|ref|XP_002867094.1| hypothetical protein ARALYDRAFT_912880 [Arabidopsis lyrata subsp. lyrata] gi|297312930|gb|EFH43353.1| hypothetical protein ARALYDRAFT_912880 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/404 (73%), Positives = 354/404 (87%), Gaps = 5/404 (1%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE + LDQVEEEF+VWK+NTPFLYDL++SHPLEWPSLT+HWVPS P PY+ DP
Sbjct: 1 MAAEEGKDEPGLDQVEEEFSVWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYAKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGS GDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATASDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSVGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQL ELDAEDGPPELLFSH
Sbjct: 301 LSRHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR+DD+
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYREDDE 404
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|27754479|gb|AAO22687.1| putative WD-40 repeat protein (MSI3) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/400 (74%), Positives = 352/400 (88%), Gaps = 5/400 (1%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP
Sbjct: 1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADDVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGSAGDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQL ELDAEDGPPELLFSH
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21593624|gb|AAM65591.1| putative WD-40 repeat protein, MSI2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/403 (74%), Positives = 349/403 (86%), Gaps = 4/403 (0%)
Query: 1 MAAE-EQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
MA E +++ + QVEE+F+VWKKNTPFLYDL++SHPLEWPSLT+HWVPS P PY AD F
Sbjct: 1 MADEGKEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTIHWVPSTPNPYVADSYF 60
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVN 119
VHK +LGTHTS +FLM+AD V PT ++E +GG N++PVIPKVEI Q+IRVDGEVN
Sbjct: 61 GVHKLILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQDPVIPKVEIRQRIRVDGEVN 120
Query: 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFK 178
RARCMPQKP LVG KTS CEV++FD AK A K Q +CDPDLRL GHDKEGYGLSWSPFK
Sbjct: 121 RARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLVGHDKEGYGLSWSPFK 180
Query: 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238
EGYL+SGS D KICLWDVSA QDKV++AM VYE HES + DVSWH+KNENLFGSAG+D
Sbjct: 181 EGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDG 240
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
+L+IWD RTNQ Q +VK HE+EVNYLSFNP+NEWVLATASSD+TVALFD+RK+ PLH++
Sbjct: 241 RLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVM 300
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSHG 356
SSH EVFQVEWDPNHETVLASS +DRRLMVWDLNR+G+EQL ELDAEDGPPELLFSHG
Sbjct: 301 SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG 360
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
GHKAKISDF+WNKN+PWVI+SVA+DN++QVWQM +SIYRD++D
Sbjct: 361 GHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYRDEED 403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2394233|gb|AAB70244.1| WD-40 repeat protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/400 (73%), Positives = 352/400 (88%), Gaps = 5/400 (1%)
Query: 1 MAAEEQ--DASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP
Sbjct: 1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-QQDDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++E+++WH+KNEN+FGSAGDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEELAWHMKNENIFGSAGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL--ELDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQL ELDAEDGPPELLFSH
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 406 | ||||||
| TAIR|locus:2131551 | 424 | MSI3 "MULTICOPY SUPPRESSOR OF | 0.972 | 0.931 | 0.742 | 5.4e-173 | |
| TAIR|locus:2059856 | 415 | MSI2 "AT2G16780" [Arabidopsis | 0.972 | 0.951 | 0.746 | 1.2e-170 | |
| TAIR|locus:2161253 | 424 | MSI1 "MULTICOPY SUPRESSOR OF I | 0.958 | 0.917 | 0.556 | 1.9e-122 | |
| UNIPROTKB|Q6INH0 | 425 | rbbp4-b "Histone-binding prote | 0.933 | 0.891 | 0.558 | 1.6e-118 | |
| UNIPROTKB|F2Z4M0 | 425 | RBBP4 "Histone-binding protein | 0.933 | 0.891 | 0.555 | 5.4e-118 | |
| UNIPROTKB|Q3MHL3 | 425 | RBBP4 "Histone-binding protein | 0.933 | 0.891 | 0.555 | 5.4e-118 | |
| UNIPROTKB|E2QXR8 | 425 | RBBP4 "Uncharacterized protein | 0.933 | 0.891 | 0.555 | 5.4e-118 | |
| UNIPROTKB|Q09028 | 425 | RBBP4 "Histone-binding protein | 0.933 | 0.891 | 0.555 | 5.4e-118 | |
| MGI|MGI:1194912 | 425 | Rbbp4 "retinoblastoma binding | 0.933 | 0.891 | 0.555 | 5.4e-118 | |
| RGD|1593768 | 425 | Rbbp4 "retinoblastoma binding | 0.933 | 0.891 | 0.555 | 5.4e-118 |
| TAIR|locus:2131551 MSI3 "MULTICOPY SUPPRESSOR OF IRA1 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 5.4e-173, P = 5.4e-173
Identities = 297/400 (74%), Positives = 352/400 (88%)
Query: 1 MAAEE--QDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
MAAEE +A LDQVEEEF++WK+NTPFLYDL++SHPLEWPSLT+HWVPS P PYS DP
Sbjct: 1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPY 60
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118
FAVHK +LGTHTS +FLM+AD V+PT D+E +GG+++ P++PKVEI QKIRVDGEV
Sbjct: 61 FAVHKLILGTHTSGGAQDFLMVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEV 120
Query: 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPF 177
NRARCMPQKP LVG KTS EV++FD A+ + K Q +CDPDLRL GH++EGYGL+WS F
Sbjct: 121 NRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLAWSSF 180
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237
KEGYL+SGS D +ICLWDVSA A DKV++ MHVYE H+S++EDV+WH+KNEN+FGSAGDD
Sbjct: 181 KEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDD 240
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
CQL+IWDLRTNQ Q +VK HE+E+NYLSFNP+NEWVLATASSD+TVALFD+RK+T PLH+
Sbjct: 241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHV 300
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE--LDAEDGPPELLFSH 355
LS H EVFQVEWDPNHETVLASS +DRRLMVWD+NR+GDEQLE LDAEDGPPELLFSH
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GGHKAKISDF+WNK++PWVISSVA+DN++QVWQM +SIYR
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400
|
|
| TAIR|locus:2059856 MSI2 "AT2G16780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
Identities = 298/399 (74%), Positives = 344/399 (86%)
Query: 1 MAAE-EQDASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTF 59
MA E +++ + QVEE+F+VWKKNTPFLYDL++SHPLEWPSLTVHWVPS P PY AD F
Sbjct: 1 MADEGKEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYF 60
Query: 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVN 119
VHK +LGTHTS +FLM+AD V PT ++E +GG N++P IPKVEI Q+IRVDGEVN
Sbjct: 61 GVHKLILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVN 120
Query: 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFK 178
RARCMPQKP LVG KTS CEV++FD AK A K Q +CDPDLRL GHDKEGYGLSWSPFK
Sbjct: 121 RARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSECDPDLRLVGHDKEGYGLSWSPFK 180
Query: 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238
EGYL+SGS D KICLWDVSA QDKV++AM VYE HES + DVSWH+KNENLFGSAG+D
Sbjct: 181 EGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDG 240
Query: 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
+L+IWD RTNQ Q +VK HE+EVNYLSFNP+NEWVLATASSD+TVALFD+RK+ PLH++
Sbjct: 241 RLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVM 300
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE--LDAEDGPPELLFSHG 356
SSH EVFQVEWDPNHETVLASS +DRRLMVWDLNR+G+EQLE LDAEDGPPELLFSHG
Sbjct: 301 SSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHG 360
Query: 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
GHKAKISDF+WNKN+PWVI+SVA+DN++QVWQM +SIYR
Sbjct: 361 GHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYR 399
|
|
| TAIR|locus:2161253 MSI1 "MULTICOPY SUPRESSOR OF IRA1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 226/406 (55%), Positives = 293/406 (72%)
Query: 4 EEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAV 61
EE +++ + EE+ +WKKNTPFLYDL+++H LEWPSLTV W+P +P D ++V
Sbjct: 6 EEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD--YSV 63
Query: 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENP--------VIPKVEIAQKIR 113
K +LGTHTSE PN+LM+A LP D+ES +++ KV+I Q+I
Sbjct: 64 QKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQIN 123
Query: 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKEGYG 171
DGEVNRAR MPQ P ++ TKT + EVYVFD +K K D C+PDL+L+GH EGYG
Sbjct: 124 HDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYG 183
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
LSWS FK+G+L+SGS D +ICLWD++A ++K +DA +++AHE VVEDV+WHL++E LF
Sbjct: 184 LSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHEYLF 243
Query: 232 GSAGDDCQLMIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288
GS GDD L+IWDLR+ ++ Q V AH EVN L+FNP+NEWV+AT S+D TV LFD+
Sbjct: 244 GSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDL 303
Query: 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348
RK++ LH SH EEVFQV W+P +ET+LAS RRLMVWDL+RI +EQ DAEDGP
Sbjct: 304 RKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGP 363
Query: 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
PELLF HGGH +KISDFSWN + WVISSVA+DN +Q+WQM ++IY
Sbjct: 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409
|
|
| UNIPROTKB|Q6INH0 rbbp4-b "Histone-binding protein RBBP4-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 221/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT SC+V VFD K K +C+PDLRL+GH KEGYGLSW+P G L
Sbjct: 134 PQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
| RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 220/396 (55%), Positives = 285/396 (71%)
Query: 13 VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE 72
+ EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +P D F++H+ VLGTHTS+
Sbjct: 17 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD--FSIHRLVLGTHTSD 74
Query: 73 DFPNFLMIADAVLPTKDSESNVGG----KNE----NPVIPKVEIAQKIRVDGEVNRARCM 124
+ N L+IA LP D++ + K E V K+EI KI +GEVNRAR M
Sbjct: 75 E-QNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
PQ P ++ TKT S +V VFD K K +C+PDLRL+GH KEGYGLSW+P G+L
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 183 VSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+S S D+ ICLWD+SA+ ++ KV+DA ++ H +VVEDVSWHL +E+LFGS DD +LM
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 242 IWDLRTNQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
IWD R+N T + V AH EVN LSFNPY+E++LAT S+D TVAL+D+R + + LH
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DAEDGPPELLF HGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
AKISDFSWN N+PWVI SV++DN +QVWQM ++IY
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0CS36 | HAT2_CRYNJ | No assigned EC number | 0.4393 | 0.9162 | 0.8551 | yes | no |
| Q09028 | RBBP4_HUMAN | No assigned EC number | 0.5547 | 0.9384 | 0.8964 | yes | no |
| Q8AVH1 | RBBP7_XENLA | No assigned EC number | 0.5398 | 0.9384 | 0.8964 | N/A | no |
| Q9W7I5 | RBBP4_CHICK | No assigned EC number | 0.5522 | 0.9384 | 0.8964 | yes | no |
| Q4I7L0 | HAT2_GIBZE | No assigned EC number | 0.3798 | 0.9605 | 0.9219 | yes | no |
| Q6INH0 | RBP4B_XENLA | No assigned EC number | 0.5572 | 0.9384 | 0.8964 | N/A | no |
| O22466 | MSI1_SOLLC | No assigned EC number | 0.5657 | 0.9458 | 0.9056 | N/A | no |
| O22469 | MSI3_ARATH | No assigned EC number | 0.7425 | 0.9729 | 0.9316 | yes | no |
| O22468 | MSI2_ARATH | No assigned EC number | 0.7462 | 0.9729 | 0.9518 | no | no |
| Q5M7K4 | RBBP4_XENTR | No assigned EC number | 0.5547 | 0.9384 | 0.8964 | yes | no |
| Q6CSI1 | HAT2_KLULA | No assigned EC number | 0.3538 | 0.9236 | 0.9191 | yes | no |
| Q4R304 | RBBP7_MACFA | No assigned EC number | 0.5232 | 0.9556 | 0.9129 | N/A | no |
| Q3MHL3 | RBBP4_BOVIN | No assigned EC number | 0.5547 | 0.9384 | 0.8964 | yes | no |
| Q75C99 | HAT2_ASHGO | No assigned EC number | 0.3456 | 0.8891 | 0.8534 | yes | no |
| Q6FXI8 | HAT2_CANGA | No assigned EC number | 0.3479 | 0.9162 | 0.8878 | yes | no |
| Q60972 | RBBP4_MOUSE | No assigned EC number | 0.5547 | 0.9384 | 0.8964 | yes | no |
| Q54SD4 | RBBD_DICDI | No assigned EC number | 0.5202 | 0.9679 | 0.9290 | yes | no |
| Q6C7Q4 | HAT2_YARLI | No assigned EC number | 0.3516 | 0.9408 | 0.8451 | yes | no |
| Q2UA71 | HAT2_ASPOR | No assigned EC number | 0.4275 | 0.9334 | 0.8692 | yes | no |
| P39984 | HAT2_YEAST | No assigned EC number | 0.3517 | 0.9285 | 0.9401 | yes | no |
| Q6BK34 | HAT2_DEBHA | No assigned EC number | 0.3503 | 0.9113 | 0.8915 | yes | no |
| Q24572 | CAF1_DROME | No assigned EC number | 0.5301 | 0.9655 | 0.9116 | yes | no |
| Q8SRK1 | HAT2_ENCCU | No assigned EC number | 0.3674 | 0.9014 | 0.9531 | yes | no |
| O94244 | HAT2_SCHPO | No assigned EC number | 0.4307 | 0.9433 | 0.8906 | yes | no |
| Q61Y48 | LIN53_CAEBR | No assigned EC number | 0.5169 | 0.9679 | 0.9447 | N/A | no |
| Q10G81 | MSI1_ORYSJ | No assigned EC number | 0.5623 | 0.9556 | 0.9065 | yes | no |
| Q4WEI5 | HAT2_ASPFU | No assigned EC number | 0.4250 | 0.9334 | 0.8692 | yes | no |
| Q5RF92 | RBBP4_PONAB | No assigned EC number | 0.5547 | 0.9384 | 0.8964 | yes | no |
| O93377 | RBP4A_XENLA | No assigned EC number | 0.5497 | 0.9384 | 0.8964 | N/A | no |
| Q6P3H7 | RBBP4_DANRE | No assigned EC number | 0.5472 | 0.9384 | 0.8985 | yes | no |
| P90916 | LIN53_CAEEL | No assigned EC number | 0.5072 | 0.9679 | 0.9424 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 406 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-29 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-28 | |
| pfam12265 | 73 | pfam12265, CAF1C_H4-bd, Histone-binding protein RB | 4e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-07 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 5e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 8e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 9e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-31
Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 154 DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213
+ + LKGH ++ S YL SGS D I LWD+ + +
Sbjct: 39 ETGELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLE---TGECV---RTLTG 91
Query: 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273
H S V V++ + + S+ D + +WD+ T + ++ H VN ++F+P
Sbjct: 92 HTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TF 149
Query: 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
+A++S D T+ L+D+R + L+ HT EV V + P+ L SS+ D + +WDL
Sbjct: 150 VASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDL- 206
Query: 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
G L GH+ ++ +++ + + S ++D T++VW +
Sbjct: 207 STGKCLGTLR-------------GHENGVNSVAFSPDGYLLASG-SEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-30
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 26/228 (11%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH +++SP L S S D I +WDV K + H V
Sbjct: 88 TLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDV---ETGKCL---TTLRGHTDWVNS 140
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
V++ + S+ D + +WDLRT + + H EVN ++F+P + L ++SSD
Sbjct: 141 VAFS-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSD 198
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
T+ L+D+ L L H V V + P+ +LAS ++D + VWDL R G+
Sbjct: 199 GTIKLWDLS-TGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDL-RTGECVQ 255
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
L GH ++ +W+ + + S + D T+++W
Sbjct: 256 TL-------------SGHTNSVTSLAWSPDGKRLASG-SADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (292), Expect = 8e-29
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 20/228 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + L++SP + S D I LWD+ + H V +
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP------LSTLAGHTDPVSSL 204
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ L S D + +WDL T + + + + SF+P +LA+ SSD
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDG 263
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
T+ L+D+R + L LS H+ V V + P+ + +LAS + D + +WDL
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDL--------- 313
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
E G + GH+ +S S++ + ++S +DD T+++W +
Sbjct: 314 ---ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-28
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGH +++SP L +GS D I +WD+ + + + + H V DV
Sbjct: 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDL------ETGELLRTLKGHTGPVRDV 57
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ L S D + +WDL T + + + H V+ ++F+P L+++S D
Sbjct: 58 AASADGTYLA-SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSSSSRDK 115
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
T+ ++D+ L L HT+ V V + P+ T +ASS+ D + +WDL
Sbjct: 116 TIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLR-------- 165
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ + + GH +++ +++ + ++SS + D T+++W ++
Sbjct: 166 ------TGKCVATLTGHTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 4e-24
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 14 EEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSED 73
EE+ +WKKN PFLYD++ +H LEWPSL+ W+P + + +LGT TS
Sbjct: 1 NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPD--LLKGDNRYPHTQRLLLGTQTSGQ 58
Query: 74 FPNFLMIADAVLPTK 88
N+L++A LP+K
Sbjct: 59 EQNYLLVAKVSLPSK 73
|
The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 7e-22
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268
+ H V V++ + L + D + +WDL T + + +K H V ++ +
Sbjct: 3 RTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+ LA+ SSD T+ L+D+ + L+ HT V V + P+ +L+SS+ D+ +
Sbjct: 62 DGTY-LASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIK 118
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
VWD+ + L + GH ++ +++ D ++S + D T+++W
Sbjct: 119 VWDVE--------------TGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWD 163
Query: 389 M 389
+
Sbjct: 164 L 164
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.5 bits (223), Expect = 8e-20
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
L S S D + LWD+S + E H V +++ + L + D +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLI-----RTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS 300
+WDLRT + + H V+ L+F+P ++A+ SSD T+ L+D+ + LS
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360
H++ V + P+ +LAS + D + +WDL LL + GH +
Sbjct: 241 HSDSVVSS-FSPDGS-LLASGSSDGTIRLWDLRSSS-------------SLLRTLSGHSS 285
Query: 361 KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDFLATTDD 406
+ +++ + + S + D TV++W +
Sbjct: 286 SVLSVAFSPDGKLLASG-SSDGTVRLWDLETGKLLSSLTLKGHEGP 330
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.3 bits (199), Expect = 1e-16
Identities = 65/286 (22%), Positives = 107/286 (37%), Gaps = 25/286 (8%)
Query: 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSW 174
V+ P L+ + +S + ++D + + L GH S+
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST-------LSGHSDSVVS-SF 249
Query: 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234
SP L SGS D I LWD+ + + H S V V++ + L S
Sbjct: 250 SPDGS-LLASGSSDGTIRLWDLRSSSSLLRT-----LSGHSSSVLSVAFS-PDGKLLASG 302
Query: 235 GDDCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292
D + +WDL T + +K HE V+ LSF+P +++ S D T+ L+D+R
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Query: 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352
+ V V + P+ V++S + D + +WDL+ + L
Sbjct: 363 PLKTL--EGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLD 419
Query: 353 FSH-GGHKAKISD----FSWNKNDPWVISSVADDNTVQVWQMTDSI 393
FS G A S W+ S + D V + +D
Sbjct: 420 FSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLS 465
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353
L HT V V + P+ + LA+ + D + VWDL ELL
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLE--------------TGELLR 45
Query: 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ GH + D + + + ++ S + D T+++W
Sbjct: 46 TLKGHTGPVRDVAASADGTYLASG-SSDKTIRLW 78
|
Length = 289 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSA--LAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
++++PF L + S D I W + L Q+ +H+ + H V VS+H N
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMN 139
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
+ SAG D + +WD+ + + +K H ++ L +N + +L T S D + + D R
Sbjct: 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPR 198
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLA---SSADDRRLMVWDLNRI 335
T+ + + + + + W + ++ S + R++M+WD ++
Sbjct: 199 DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247
|
Length = 493 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 8e-07
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347
MRK P+ L HT + ++++P +LAS ++D + VW++ DE ++ E
Sbjct: 62 MRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHNDESVK---EIK 115
Query: 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
P+ + GHK KIS WN + +++ S D+ V +W +
Sbjct: 116 DPQCILK--GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 9e-06
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 253 RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR-------KMTVPLHILSSHTEEV 305
++K H + L FNP +LA+ S D T+ ++++ ++ P IL H +++
Sbjct: 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128
Query: 306 FQVEWDPNHETVLASSADDRRLMVWDL 332
++W+P + ++ SS D + +WD+
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195
LKGH +++SP L SGS D + +WD
Sbjct: 7 LKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
L L HT V V + P+ +LAS +DD + VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195
LKGH +++SP + YL SGS D I LWD
Sbjct: 8 LKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
L L HT V V + P+ LAS +DD + +WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 16/85 (18%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR--------VKAHEKEVNY 263
+ H S + D+ ++ + S +D + +W++ N + +K H+K+++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 264 LSFNPYNEWVLATASSDTTVALFDM 288
+ +NP N +++ ++ D+ V ++D+
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 7e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
+ + H V V++ + NL S DD + +WD
Sbjct: 4 LRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 8e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
+ H V V++ + S DD + +WD
Sbjct: 6 KTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD--KVIDAMHVYEAHE 215
P ++LKGH L ++P L SGS D I +W++ + ++ D + + H+
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245
+ + W+ N + S+G D + IWD+
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+LL + GH ++ +++ + + S +DD TV+VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASG-SDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 154 DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195
+ L GH L+WSP L SGS D I +WD
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 53/243 (21%), Positives = 108/243 (44%), Gaps = 26/243 (10%)
Query: 160 LRLKGHDKEGYGLSWSPF-------KEGYLVSGSHDNK-ICLWDVSALAQD-KVIDAMHV 210
LR+K K+G L+ S ++G + + NK I +++ ++ +D + I V
Sbjct: 468 LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV 527
Query: 211 YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270
A S + + W+ ++ S+ + + +WD+ +Q +K HEK V + ++ +
Sbjct: 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587
Query: 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+LA+ S D +V L+ + + V + + + + V++ LA + D ++ +
Sbjct: 588 PTLLASGSDDGSVKLWSINQ-GVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYY 645
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
DL P L + GH +S + + V SS DNT+++W ++
Sbjct: 646 DLR-------------NPKLPLCTMIGHSKTVSYVRFVDSSTLVSSST--DNTLKLWDLS 690
Query: 391 DSI 393
SI
Sbjct: 691 MSI 693
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 406 | |||
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.98 | |
| PTZ00420 | 568 | coronin; Provisional | 99.98 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| PTZ00421 | 493 | coronin; Provisional | 99.98 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.92 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.84 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.83 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.82 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.8 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.79 | |
| PF12265 | 74 | CAF1C_H4-bd: Histone-binding protein RBBP4 or subu | 99.79 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.79 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.77 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.77 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.71 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.67 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.66 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.62 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.6 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.59 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.56 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.55 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.49 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.49 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.47 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.47 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.47 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.46 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.45 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.42 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.42 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.4 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.39 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.37 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.32 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.3 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.25 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.23 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.2 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.16 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.15 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.11 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.07 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.07 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.07 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.06 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.05 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.05 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.05 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.04 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.02 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.01 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.0 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.98 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.97 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.93 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.93 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.92 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.84 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.79 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.79 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.73 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.67 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.65 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.65 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.64 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.64 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.62 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.59 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.55 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.51 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.5 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.41 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.32 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.29 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.28 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.24 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.23 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.02 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.98 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.97 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.97 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.92 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.91 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.85 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.84 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.82 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.79 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.75 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.74 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.69 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.66 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.59 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.57 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.55 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.51 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.48 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.48 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.47 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.47 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.43 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.42 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.4 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.36 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.31 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.16 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.16 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.08 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.01 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.0 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.85 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.81 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.78 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.74 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.73 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.73 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.72 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.71 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.62 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.62 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.55 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.43 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.42 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.39 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.38 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.36 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.31 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.28 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.22 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.21 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.04 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.03 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.96 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.85 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.65 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.63 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.62 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.51 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.41 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.25 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.18 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.17 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.72 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.7 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.66 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.62 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.54 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.5 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.28 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.21 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.18 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.15 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.8 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.76 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.57 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 93.41 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.37 | |
| PRK10115 | 686 | protease 2; Provisional | 93.36 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.33 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.21 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.98 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.85 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.75 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.59 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.54 | |
| PRK10115 | 686 | protease 2; Provisional | 92.45 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.33 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 91.84 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.82 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.81 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.76 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.7 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.65 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.65 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.52 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.36 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.29 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.24 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.91 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.35 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.98 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.82 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.47 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 86.86 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.28 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 86.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 85.33 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 85.12 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.61 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.42 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 83.8 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.36 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 82.98 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 82.89 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 82.85 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 82.28 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.21 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 81.8 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 81.77 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 81.44 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 81.44 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 81.26 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.86 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.71 |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-76 Score=501.95 Aligned_cols=393 Identities=58% Similarity=1.025 Sum_probs=355.1
Q ss_pred hchhhhhHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCC
Q 015484 8 ASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPT 87 (406)
Q Consensus 8 ~~~~~~~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~ 87 (406)
.+.+.++|||++||||+|||||++++|.|+||||+|||+|+.... . +.+|..||+++||+++++.+|+++|+++.+|.
T Consensus 11 ~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~-~-~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~ 88 (422)
T KOG0264|consen 11 LEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKP-E-EKDFSKQRLILGTHTSGSEQNYLVIASVQLPT 88 (422)
T ss_pred hccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccc-c-CCCceeEEEEEEeecCCCCccEEEEEeecCCC
Confidence 566799999999999999999999999999999999999997665 4 78899999999999999999999999999995
Q ss_pred CCCCCCCC-CCCCC---C----CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCCC
Q 015484 88 KDSESNVG-GKNEN---P----VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCD 157 (406)
Q Consensus 88 ~~~~~~~~-~~~~~---~----~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~ 157 (406)
....+... .+.|. . ..+++++.+++.|.+.|++++++|+.+.++|+++..+.|+|||..+...... +.+.
T Consensus 89 ~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~ 168 (422)
T KOG0264|consen 89 DDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECR 168 (422)
T ss_pred cccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCC
Confidence 44333311 11111 1 3568999999999999999999999999999999999999999988766553 2678
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
|...+.+|....++++|++...+.|++|+.|++|++||++.... .+.+.+...+.+|...|.+++|++.+..+|++++.
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 88899999999999999999888999999999999999988655 35567778899999999999999999999999999
Q ss_pred CCcEEEEECC--CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 237 DCQLMIWDLR--TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 237 dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
|+.+.|||+| +.+......+|...|+|++|+|.+.++||+|+.|++|.+||+|+...++..+.+|...|.++.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 45556667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+||+++.|+.+.|||+...+..+.....+++|++++|.+.||...|.++.|+|+.+|+|+|+++|+.++||++...++
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccc
Q 015484 395 RDDDDFLA 402 (406)
Q Consensus 395 ~~~~~~~~ 402 (406)
.+++....
T Consensus 409 ~~e~~~~~ 416 (422)
T KOG0264|consen 409 NPEDPEES 416 (422)
T ss_pred CccccCcc
Confidence 88776544
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=298.85 Aligned_cols=355 Identities=29% Similarity=0.556 Sum_probs=283.9
Q ss_pred hhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCce-eEEEEEeecCCCCCCCeEEEEEEeCCCCCCC--CCCCCC-CCC
Q 015484 25 PFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFA-VHKFVLGTHTSEDFPNFLMIADAVLPTKDSE--SNVGGK-NEN 100 (406)
Q Consensus 25 ~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~-~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~--~~~~~~-~~~ 100 (406)
|..|.+++.....||||+++.+|+.... . +..|. ..+++.||++++...|.|.++++.--..... ...|++ +|.
T Consensus 57 psaYe~lH~~~~gwPcLsfDVi~D~LG~-e-R~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~ed 134 (440)
T KOG0302|consen 57 PSAYEMLHNFNSGWPCLSFDVIPDRLGD-E-RTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEED 134 (440)
T ss_pred HHHHHHhhcccCCCcccceeeecCCCCc-c-cccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCcccc
Confidence 6799999999999999999999998877 4 45555 3467889999999999999998872111111 111111 111
Q ss_pred C---CCCCeEEEEEeecCCceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccc--------cCCCCCceeeeCCCCC
Q 015484 101 P---VIPKVEIAQKIRVDGEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQ--------QDDCDPDLRLKGHDKE 168 (406)
Q Consensus 101 ~---~~~~~~~~~~~~h~~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~h~~~ 168 (406)
+ ..|.+. .+.++|.+.+++++.++.+ ..+.|+-+..|.|+||++....... .....|+.++.+|...
T Consensus 135 dedD~~P~~~-~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E 213 (440)
T KOG0302|consen 135 DEDDRKPQIE-MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE 213 (440)
T ss_pred chhhcccccc-ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc
Confidence 1 234444 5578999999999999864 4577888899999999997643322 1457889999999999
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.++++|||...+.|++|..-+.|++|...++.- ... ...+.+|...|.+++|+|....+|++|+.||+|+|||+|.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--~vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--KVD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCce--eec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 999999997766899999999999999888542 221 13456799999999999999999999999999999999988
Q ss_pred cccc--cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 QTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.... ..++|.+.|+.|+|+.... +||+|+.||+++|||+|+.+ .|+..++.|..+|++|.|+|.....|++++.|
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 4322 2388999999999999888 99999999999999999754 67999999999999999999988899999999
Q ss_pred CcEEEEeCCCCCcc-----cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 325 RRLMVWDLNRIGDE-----QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 325 g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.+|.|||+...... .......+-|++++|.++|.. .|..+.|+++-+.++++.+.|| +.||.
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccc-eeEEE
Confidence 99999999764431 111223457899999998754 6999999999888899999998 56664
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=306.44 Aligned_cols=290 Identities=21% Similarity=0.311 Sum_probs=251.2
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE
Q 015484 31 IVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ 110 (406)
Q Consensus 31 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (406)
+.+.--+-|...|.|.++. ..++.|+.. ..+.+|+.. . - -.+..
T Consensus 169 ~SQ~gd~rPis~~~fS~ds------------~~laT~sws-----G~~kvW~~~------~------------~-~~~~~ 212 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDS------------KHLATGSWS-----GLVKVWSVP------Q------------C-NLLQT 212 (459)
T ss_pred hhhccCCCcceeeEeecCC------------CeEEEeecC-----CceeEeecC------C------------c-ceeEE
Confidence 3334445588888887642 256667764 345555433 0 0 13456
Q ss_pred EeecCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+|.+.|.++.|+|. ...-+|+|+.||++++|++.+ -.++..+.+|...|..++|+|+|. +|+|++.|.
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~ 283 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------ETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDS 283 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------CcchhhhhcchhhheeeeecCCCc-eeeeccccc
Confidence 7789999999999997 456799999999999999987 356788999999999999999999 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+-++||++++... ....+|...|.+++|+| ++.++++|+.|..-+|||+|+++++..+.+|..+|.+|+|+|+
T Consensus 284 tWRlWD~~tk~El------L~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 284 TWRLWDLETKSEL------LLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred chhhcccccchhh------HhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence 9999999987542 44578999999999998 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|- .||||+.|++++|||+|.... +.++.+|..-|+.+.|+|...++|+|++.|++++||...+ .
T Consensus 357 Gy-~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--------------~ 420 (459)
T KOG0272|consen 357 GY-HLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--------------W 420 (459)
T ss_pred ce-EEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--------------c
Confidence 98 999999999999999998665 8999999999999999997667999999999999999887 5
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.++.++.||.+.|.++..++++. .++|++.|.++++|..
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWRP 459 (459)
T ss_pred ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeeccC
Confidence 78888999999999999999999 6999999999999963
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=296.54 Aligned_cols=300 Identities=20% Similarity=0.324 Sum_probs=254.9
Q ss_pred EEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCC----CCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCC
Q 015484 63 KFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKN----ENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSC 138 (406)
Q Consensus 63 ~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg 138 (406)
-+.-++.+..++...|+ ++.|.|+++.+.+|..+ -++..-........+|..-|.|++|+|++ ..||+|+.||
T Consensus 103 pvtrCssS~~GH~e~Vl--~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg 179 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVL--SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDG 179 (480)
T ss_pred ccceeccccCCCCCcEE--EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCC
Confidence 34456666677777766 77787788888876555 11111222233455899999999999999 5799999999
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC-----CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF-----KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+|++||..++.. .-..+.+|...|++++|.|- .+ +|++++.||.|+|||+..+. ++..+.+
T Consensus 180 ~I~lwdpktg~~-------~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~------~~~~lsg 245 (480)
T KOG0271|consen 180 SIRLWDPKTGQQ-------IGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT------CVRTLSG 245 (480)
T ss_pred eEEEecCCCCCc-------ccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce------EEEEecc
Confidence 999999888533 35678999999999999873 34 89999999999999998764 3567789
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC-----------CCC-----------
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP-----------YNE----------- 271 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-----------~~~----------- 271 (406)
|..+|+|+.|- +..++++|+.|++|++|+...|.+...+++|...|+.++.+. .+.
T Consensus 246 HT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 246 HTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred CccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 99999999997 688999999999999999999999999999999999998872 222
Q ss_pred -------------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 272 -------------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 272 -------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|++|+.|.++.+|+....++|+..+.+|..-|+.+.|+|+++ ++|+++-|..|++||.++
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t---- 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT---- 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCC----
Confidence 15999999999999999988889999999999999999999998 699999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.+.+++||...|+.++|+.|.+ +|+||+.|.++++|++.+..+..+
T Consensus 399 ----------Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 399 ----------GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred ----------cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeeccc
Confidence 577888999999999999999999 899999999999999999877554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=291.78 Aligned_cols=315 Identities=21% Similarity=0.331 Sum_probs=260.6
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEE-Eee----cCCCCCCCeEEEEEEeCCCCCCCCCCCCCCC----CC-CCCCe
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFV-LGT----HTSEDFPNFLMIADAVLPTKDSESNVGGKNE----NP-VIPKV 106 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~-~gt----~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 106 (406)
.-|.++++|.|+.....+ .+....-|+. +-| ++..++.|.+. ++...|+++.+.+|.-+. ++ .++..
T Consensus 115 ~e~Vl~~~fsp~g~~l~t-GsGD~TvR~WD~~TeTp~~t~KgH~~WVl--cvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVT-GSGDTTVRLWDLDTETPLFTCKGHKNWVL--CVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCcEEEEEecCCCceEEe-cCCCceEEeeccCCCCcceeecCCccEEE--EEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 447899999997655423 4444555655 333 34567888887 777778999998764441 11 23344
Q ss_pred EEEEEeecCCceeEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 107 EIAQKIRVDGEVNRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
.-....+|+..|++++|.|- ...+||+++.||.|+|||+... ..+..+.+|+.+|+|+.|- |.++|
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--------~~~~~lsgHT~~VTCvrwG--G~gli 261 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--------TCVRTLSGHTASVTCVRWG--GEGLI 261 (480)
T ss_pred ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--------eEEEEeccCccceEEEEEc--CCceE
Confidence 44556689999999999982 2358999999999999999873 4478899999999999996 45599
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee-----------CC------------------------C
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH-----------LK------------------------N 227 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------p~------------------------~ 227 (406)
++|+.|++|++|+...+.. ...+++|...|+.++.+ |. +
T Consensus 262 ySgS~DrtIkvw~a~dG~~------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKL------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCCCceEEEEEccchhH------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 9999999999999988643 36677899999998876 21 2
Q ss_pred CCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 228 ENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
+..+++|++|+++.+|+.... +++..+.+|..-|+.+.|+|++. ++|+++-|..|++||.++++. +..+.+|-..|.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKF-LASFRGHVAAVY 413 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcch-hhhhhhccceeE
Confidence 236999999999999998654 46788899999999999999999 999999999999999999876 899999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.++|+.+.+ +|++|+.|.++++||+++ .++.+.+.||...|.++.|+|+|. .+++|+.|..+++
T Consensus 414 qvawsaDsR-LlVS~SkDsTLKvw~V~t--------------kKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~l 477 (480)
T KOG0271|consen 414 QVAWSADSR-LLVSGSKDSTLKVWDVRT--------------KKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRL 477 (480)
T ss_pred EEEeccCcc-EEEEcCCCceEEEEEeee--------------eeecccCCCCCceEEEEEecCCCc-eeecCCCceEEEe
Confidence 999999997 899999999999999997 577788899999999999999999 7999999999999
Q ss_pred Ee
Q 015484 387 WQ 388 (406)
Q Consensus 387 w~ 388 (406)
|.
T Consensus 478 w~ 479 (480)
T KOG0271|consen 478 WR 479 (480)
T ss_pred ec
Confidence 95
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=298.10 Aligned_cols=251 Identities=23% Similarity=0.392 Sum_probs=229.2
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCC-CCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFK-EGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg 189 (406)
.++-..+|..+.|++++ ..||||+.+|.++||+..+ +....++.+|...|.++.|+|.. ...|+||+.||
T Consensus 171 Q~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~--------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQ--------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred hccCCCcceeeEeecCC-CeEEEeecCCceeEeecCC--------cceeEEEeccccceeeEEEccCCCccceeeeccCC
Confidence 44567899999999999 6899999999999999988 45588999999999999999973 44899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++|++++. .++..+.+|...|..++|+| ++++|++++.|.+-++||++++..+....+|...|.+++|+|+
T Consensus 242 tvklw~~~~e------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 242 TVKLWKLSQE------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred ceeeeccCCC------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCC
Confidence 9999999875 24577889999999999999 8999999999999999999999998888999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. ++++|+.|..-+|||+|++.+ +..+.+|..+|.+|+|+|+|. .||||+.|++++|||++. .
T Consensus 315 GS-L~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~--------------r 377 (459)
T KOG0272|consen 315 GS-LAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM--------------R 377 (459)
T ss_pred Cc-eeeccCccchhheeecccCcE-EEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecc--------------c
Confidence 99 999999999999999999887 888999999999999999995 799999999999999997 4
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..++.+.+|.+-|+.|.|+|...++|+|++.|++++||...+...
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 557888999999999999996666899999999999999887654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=266.61 Aligned_cols=298 Identities=24% Similarity=0.417 Sum_probs=254.5
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCC--CCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecC
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE--DFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVD 115 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~--~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 115 (406)
..-++++|.|..+ .|++++|-..- .....+.|.++.-| +.+...+.+.-.
T Consensus 9 f~GysvqfSPf~~-----------nrLavAt~q~yGl~G~G~L~ile~~~~-----------------~gi~e~~s~d~~ 60 (311)
T KOG0277|consen 9 FHGYSVQFSPFVE-----------NRLAVATAQHYGLAGNGRLFILEVTDP-----------------KGIQECQSYDTE 60 (311)
T ss_pred cccceeEeccccc-----------chhheeehhhcccccCceEEEEecCCC-----------------CCeEEEEeeecc
Confidence 5568999988543 25555553211 23456776654311 457778888889
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|++...+.+++++.||.++|||+.. ...|+..++.|..+|+++.|++..+..++++|.||+|++|+
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCC-------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 99999999998888999999999999999665 35689999999999999999998777899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
...++. +.++.+|...|...+|+|..+++|++++.||.+++||++.......+..|...+.++.|+..+.++++
T Consensus 134 ~~r~~S------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 134 PNRPNS------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred CCCCcc------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 887643 47789999999999999999999999999999999999986555558899999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
||+.|+.|+.||+|+.+.|+..+.+|.-.|..++|+|....+|++++.|-+++|||..... .++...
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-------------s~~e~~ 274 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-------------SAIETV 274 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-------------hhhhhh
Confidence 9999999999999999999999999999999999999998899999999999999998632 334444
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.-|+..|..+.|++..+..+|+++.|+.++||++
T Consensus 275 ~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEeccccccccCceeeecccccceeeecc
Confidence 5688899999999987768999999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=299.43 Aligned_cols=264 Identities=26% Similarity=0.441 Sum_probs=232.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------cCCCCCce
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------QDDCDPDL 160 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------~~~~~~~~ 160 (406)
|.+.......-...++|+.|++++ .+||.|..|..|++|.+...+.+. ........
T Consensus 367 pSic~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 444444444455789999999999 589999999999999998532111 01222345
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
++.+|.++|+++.|+|+.+ +|+++|.|+++|+|.+.+. .++..+++|..+|.++.|+| .+.+||+++.|++.
T Consensus 446 ~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tA 517 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTA 517 (707)
T ss_pred EeecCCCceeeeeeccccc-ceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecC-CceEEEecCCCcee
Confidence 6889999999999999988 9999999999999999874 35677889999999999999 79999999999999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
++|......+++.+.+|...|.|++|+|+.. ++++|+.|.++++||..++.. ++.|.+|.++|.+++|+|+|+ +|++
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaS 594 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLAS 594 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEee
Confidence 9999999999999999999999999999998 999999999999999999876 999999999999999999998 5999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|+.||.|.+||+.. ..++..+.+|.+.|.++.|+.+|. +||+||.|+.|++||+..-..
T Consensus 595 g~ed~~I~iWDl~~--------------~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 595 GDEDGLIKIWDLAN--------------GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred cccCCcEEEEEcCC--------------CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcc
Confidence 99999999999987 466777889999999999999999 899999999999999876543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=280.79 Aligned_cols=277 Identities=19% Similarity=0.323 Sum_probs=232.0
Q ss_pred EEEeCCCCCCCCCCCCCC-CCC--CCCCeEE-EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC
Q 015484 81 ADAVLPTKDSESNVGGKN-ENP--VIPKVEI-AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC 156 (406)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 156 (406)
..+...++++++.+|... |++ ..-.|.. .....|..+|+++.|++++ ..+++|..+|.|++|+..-.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmn-------- 170 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMN-------- 170 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchh--------
Confidence 344555677777766544 332 1111221 2244699999999999999 78999999999999998752
Q ss_pred CCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.+..++.|. ..|.+++|+|.+. .+++++.||+|+|||....+.. ..+.+|.-.|.+++|+| ...++++++
T Consensus 171 -nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee------~vL~GHgwdVksvdWHP-~kgLiasgs 241 (464)
T KOG0284|consen 171 -NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEE------RVLRGHGWDVKSVDWHP-TKGLIASGS 241 (464)
T ss_pred -hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchh------heeccCCCCcceeccCC-ccceeEEcc
Confidence 244455554 9999999999777 9999999999999999876554 34578999999999999 688999999
Q ss_pred cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.|..|++||.+++.++.++..|+..|..+.|+|+++ +|++++.|..++++|+|.++. +..+.+|+..|+++.|+|-.+
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHH-HHHhhcchhhheeeccccccc
Confidence 999999999999999999999999999999999996 999999999999999997776 889999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.+|.+|+.||.|..|.+.... .+...-.+|...|++++|+|-|. +|++|+.|..+++|.-..
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cceeeccCCCceEEEeccccc-------------cccCCCcccccceeeeeccccce-eEeecCCCcceeeeccCC
Confidence 999999999999999987311 22223357999999999999998 899999999999997543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=254.13 Aligned_cols=289 Identities=21% Similarity=0.290 Sum_probs=237.0
Q ss_pred cCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCC----CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEe
Q 015484 69 HTSEDFPNFLMIADAVLPTKDSESNVGGKNENP----VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFD 144 (406)
Q Consensus 69 ~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~ 144 (406)
.++.++.|.|+ ++.+.++.+++.++.++... .--..+.....-...-|..++|+|.+ +++|+|+-|+...||+
T Consensus 49 r~LkGH~~Ki~--~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIY--AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP 125 (343)
T ss_pred EEeccccccee--eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence 45667777777 66666666666644444111 00011112222245789999999999 7899999999999999
Q ss_pred CCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee
Q 015484 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224 (406)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 224 (406)
+...... +.......+.+|++.+.|+.|-+++ .|+|++.|.+..+||+++++. ...|.+|.+.|.++.++
T Consensus 126 ls~~d~~--g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~------~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 126 LSTRDAE--GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQ------TQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ccccccc--ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceE------EEEecCCcccEEEEecC
Confidence 9854221 2234456789999999999999844 699999999999999999854 46778999999999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCC
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SHT 302 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~ 302 (406)
|.+++.|++|+.|+..++||+|.+..++.|.+|...|+++.|.|+|. -+++|+.|++.++||+|...+ +..+. .-.
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~ 273 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE-LAVYSHDSII 273 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE-EeeeccCccc
Confidence 98899999999999999999999999999999999999999999998 899999999999999998654 54444 234
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
.+|++++|+..|+ +|.+|..|..+.+||.-. .+.+..+.||.+.|.++..+|+|. .+++|+.|.
T Consensus 274 ~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk--------------~e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs 337 (343)
T KOG0286|consen 274 CGITSVAFSKSGR-LLFAGYDDFTCNVWDTLK--------------GERVGVLAGHENRVSCLGVSPDGM-AVATGSWDS 337 (343)
T ss_pred CCceeEEEccccc-EEEeeecCCceeEeeccc--------------cceEEEeeccCCeeEEEEECCCCc-EEEecchhH
Confidence 5899999999997 788999999999999876 466777889999999999999999 799999999
Q ss_pred cEEEEe
Q 015484 383 TVQVWQ 388 (406)
Q Consensus 383 ~i~iw~ 388 (406)
.++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=244.94 Aligned_cols=253 Identities=19% Similarity=0.414 Sum_probs=217.1
Q ss_pred EEEEeecC-CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKIRVD-GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
..+.+.|+ +.|+++...|++ ..||+++.- .|++||+.+. ...|+.++.+|+..|+++.|..+|+ .+++|+
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~q-hvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgr-WMyTgs 102 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDK-KDLAAAGNQ-HVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGR-WMYTGS 102 (311)
T ss_pred EEEEEecCccceeeEEEcCCc-chhhhccCC-eeEEEEccCC------CCCceeEEeccCCceEEEEEeecCe-EEEecC
Confidence 45677776 799999999999 467776644 5999999984 4558999999999999999999999 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEE
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLS 265 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~ 265 (406)
+||+++|||++.....+. -.|.++|+++..+| +...|++|..+|.|++||++...+...+ ......|.++.
T Consensus 103 eDgt~kIWdlR~~~~qR~-------~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRN-------YQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred CCceEEEEeccCcccchh-------ccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 999999999998554332 24679999999999 6777779999999999999987665444 44567899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCC-----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMT-----VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
..|+|. +++.+...|..++|++-+.. .|+..++.|.+.+..+.++|+++ +|++++.|.+++||+....
T Consensus 175 v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~----- 247 (311)
T KOG0315|consen 175 VMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF----- 247 (311)
T ss_pred EcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc-----
Confidence 999999 89999999999999987532 46788999999999999999998 5999999999999999872
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+-..+.+|...+++++||.+|.| |++++.|+.+++|+++.+.
T Consensus 248 --------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 --------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGK 291 (311)
T ss_pred --------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCc
Confidence 2455667899999999999999995 8899999999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=250.52 Aligned_cols=258 Identities=18% Similarity=0.301 Sum_probs=219.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|++.|+.++-.+.++.++++++.|.++.+|++..... ....++..+.||...|..+..++++. +.++++.|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~ 85 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDG 85 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---ccCceeeeeeccceEecceEEccCCc-eEEeccccc
Confidence 35579999999999999889999999999999999987633 24677899999999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~ 268 (406)
++++||+.+++. .+.|.+|...|.+++|+| +++.+++|+.|.+|++|++........... +...|+|+.|+|
T Consensus 86 ~lrlWDl~~g~~------t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATGES------TRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCCcE------EEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999998743 467889999999999999 688889999999999999875443333232 278999999999
Q ss_pred CC-CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 269 YN-EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 269 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
.. +.+|++++.|++|++||+++.+. ...+.+|++.++.++++|+|. ++++|+.||.+.+||++.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~------------- 223 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNE------------- 223 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccC-------------
Confidence 83 33999999999999999998665 778899999999999999996 799999999999999987
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.++.+ +|...|.+++|+|+..+ |+.+ .+..|+|||+.++..-++
T Consensus 224 -~k~lysl-~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 224 -GKNLYSL-EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred -CceeEec-cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhh
Confidence 2344444 47789999999999874 4443 456799999999865443
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=246.36 Aligned_cols=255 Identities=17% Similarity=0.271 Sum_probs=220.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|.++.|+++. +.|++++.||.+.|||.-+.. ..+.++-....|..++|+|.+. ++|+|+.|+.
T Consensus 51 LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn--------K~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~ 120 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN--------KVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNK 120 (343)
T ss_pred ecccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc--------ceeEEecCceeEEEEEECCCCC-eEEecCcCce
Confidence 44799999999999999 579999999999999998743 2556666788999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..||++.+.......+..+.+.+|.+.+.|+.|-+ ...|++++.|.++.+||+++++.+..+.+|.+.|.+++++|..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 99999986543344445577889999999999985 5566699999999999999999999999999999999999944
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
.+.+++|+.|+..++||+|.+.. ++.|.+|...|++++|.|+|. -+++|++|++.++||++...+ .
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~------------~ 264 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE------------L 264 (343)
T ss_pred CCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE------------E
Confidence 44999999999999999999755 999999999999999999997 499999999999999997322 3
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.++....-..+|++++||..|+ +|.+|..|..+.+||.-.+
T Consensus 265 a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecccc
Confidence 3444444566899999999999 7888899999999997655
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=281.26 Aligned_cols=255 Identities=19% Similarity=0.346 Sum_probs=220.2
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
..........+|.++|..++|+|+. ++|++++.|++|++|.+.+ ......+++|..+|+.+.|+|.|- ++
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t--------~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT--------WSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc--------ceeEEEecCCCcceeeEEecCCce-EE
Confidence 3445556688999999999999999 6899999999999999998 455788999999999999999988 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
||||.|++.++|..... .+++.+.+|-+.|.|+.||| +.+++++|+.|.++++||+.+|..++.|.+|.++|.
T Consensus 509 atas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred EecCCCceeeeeecccC------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 99999999999998774 35678889999999999999 899999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE- 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 341 (406)
+++|+|.|. +|++|+.||.|.+||+.++.. +..+.+|++.|.++.|+.+|. +||+|+.|.+|++||+.........
T Consensus 582 al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 582 ALAFSPCGR-YLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred EEEEcCCCc-eEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccccccc
Confidence 999999999 999999999999999998665 888999999999999999997 7999999999999999875443100
Q ss_pred ---------ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 342 ---------LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 342 ---------~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.........++.++.....+|..+.|....- +++.|
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 0111123346677777778999999987653 55554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=242.90 Aligned_cols=256 Identities=21% Similarity=0.306 Sum_probs=208.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+...+|+..|..+..++++ ++.++++.|+++++||+... ++...+.+|...|.+++|+++++ .+++|+.
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g--------~~t~~f~GH~~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATG--------ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred eeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCC--------cEEEEEEecCCceEEEEecCCCc-eeecCCC
Confidence 35566899999999999999 68999999999999999983 55788999999999999999998 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeec--cCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|.+|++|++-... ..+... +...|.|+.|+|.. ..+|++++.|++|++||+++-+....+.+|.+.++.+
T Consensus 126 DkTiklwnt~g~c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 126 DKTIKLWNTLGVC-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred cceeeeeeecccE-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 9999999987642 122222 36789999999954 7789999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+++|+|. ++++|+.||.+.+||++..+. +..+ .|...|.+++|+|+.. .|+. ..+..|+|||+............
T Consensus 199 ~vSpDGs-lcasGgkdg~~~LwdL~~~k~-lysl-~a~~~v~sl~fspnry-wL~~-at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 199 TVSPDGS-LCASGGKDGEAMLWDLNEGKN-LYSL-EAFDIVNSLCFSPNRY-WLCA-ATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EECCCCC-EEecCCCCceEEEEEccCCce-eEec-cCCCeEeeEEecCCce-eEee-ccCCceEEEeccchhhhhhcccc
Confidence 9999999 999999999999999998776 5554 5688999999999974 3544 44667999999874432211111
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..++ ..........+++|+++|. .|.+|-.|+.|++|.+..
T Consensus 274 ~~g~-----s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGP-----SSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccc-----ccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 1111 1122233456889999999 688999999999999753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=265.81 Aligned_cols=242 Identities=24% Similarity=0.461 Sum_probs=216.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+..|+.++|.|+| +.|++|+..|.+.+|+... +.....++.|..+|.++.|++++. .+++|+.+|.|++
T Consensus 95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKY 164 (464)
T ss_pred cccceeeEEEcCCC-ceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEe
Confidence 34689999999999 4689999999999999865 333455789999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
|+.+-.. +..+..| ...|++++|+| +...|+++++||+|+|||....+....+.+|.-.|.+++|+|...
T Consensus 165 Wqpnmnn-------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg- 235 (464)
T KOG0284|consen 165 WQPNMNN-------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG- 235 (464)
T ss_pred cccchhh-------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-
Confidence 9976532 2333444 48999999999 678888999999999999999998888999999999999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++|+.|..|++||.|++.+ +.++..|+..|..+.|+|+++ +|+|+|.|..++++|++. .+-+
T Consensus 236 LiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~--------------mkEl 299 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT--------------MKEL 299 (464)
T ss_pred eeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhH--------------hHHH
Confidence 999999999999999999877 899999999999999999996 799999999999999996 2456
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.+++|...|+++.|+|-.+.+|++|+.||.|..|.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 67789999999999999888899999999999999988
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=259.69 Aligned_cols=245 Identities=22% Similarity=0.418 Sum_probs=220.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|++++|+.+| .+||+|+.||.++||+... ....++..|.++|.++.|+..|. +|++++.||++.+
T Consensus 234 ~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G---------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttil 302 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG---------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTIL 302 (524)
T ss_pred ccCCcceEEecCCC-CeEEEeecCcEEEEEecCc---------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEE
Confidence 34689999999999 7999999999999999986 33667889999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||..++.. .+.+.-|..+-.+|.|- +..-|++++.||.|+++.+....++.++.+|.+.|.++.|+|.+. +
T Consensus 303 wd~~~g~~------~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-L 373 (524)
T KOG0273|consen 303 WDAHTGTV------KQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-L 373 (524)
T ss_pred EeccCceE------EEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-e
Confidence 99987643 35556677777888997 578899999999999999999999999999999999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC--------CEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--------TVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
|++++.|++++||.+..... ...+.+|...|..+.|+|.++ ..+++++.|++|++||+..
T Consensus 374 LaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~----------- 441 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES----------- 441 (524)
T ss_pred EEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-----------
Confidence 99999999999999887554 888999999999999999764 3699999999999999987
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+++.+..|..+|.+++|+|+|+ .+|+|+.||.|+||+..++.+
T Consensus 442 ---gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 442 ---GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred ---CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchhe
Confidence 678888999999999999999999 599999999999999998855
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=234.86 Aligned_cols=271 Identities=21% Similarity=0.399 Sum_probs=215.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.+...-+|++.+..++|+|-...+||+|+.|+.|+||+..... .......+ .+|+..|.+++|+|.|+ +|++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----s~~ck~vld~~hkrsVRsvAwsp~g~-~La~a 79 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----SWTCKTVLDDGHKRSVRSVAWSPHGR-YLASA 79 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----cEEEEEeccccchheeeeeeecCCCc-EEEEe
Confidence 4455667999999999999733699999999999999998521 12222223 36999999999999999 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc---ccccccccCCCee
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVN 262 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~ 262 (406)
|.|.++.||.-.. ..+.++..+.+|...|.+++|++ ++++||+++.|.+|-||.+.... +...+..|...|.
T Consensus 80 SFD~t~~Iw~k~~----~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 80 SFDATVVIWKKED----GEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred eccceEEEeecCC----CceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence 9999999998664 45677899999999999999998 89999999999999999998543 3566789999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+.|+|... +|++++.|.+|++|+-.... ..++++.+|...|.+++|+|.|.. |++++.|++++||.+...-....
T Consensus 155 ~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~~~~~~ 232 (312)
T KOG0645|consen 155 HVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTDLSGMH 232 (312)
T ss_pred EEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce-EEEecCCcceEeeeeccCcchhc
Confidence 999999888 99999999999999876322 347889999999999999999974 99999999999998432110000
Q ss_pred ----c--------------------ccccCCCCe----eE-EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 341 ----E--------------------LDAEDGPPE----LL-FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 341 ----~--------------------~~~~~~~~~----~~-~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. +.....+.. ++ .....|...|+++.|+|..+.+|++|+.||.|++|.+.
T Consensus 233 sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 233 SRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0 000011111 11 12246888999999999655689999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=264.15 Aligned_cols=254 Identities=21% Similarity=0.334 Sum_probs=219.7
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
|+-.+...-+|+..|+++.|.|....+|++++.|+.|+||++.. ....+.++.+|..+|.+++|+++|. .++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~-~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGT-SFL 274 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCC-eee
Confidence 45556667789999999999995558999999999999999987 3556889999999999999999999 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+++.|+.|++||+++++.. ..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+++.++.+..|-+.|..
T Consensus 275 S~sfD~~lKlwDtETG~~~------~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVL------SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeecceeeeeeccccceEE------EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 9999999999999998653 2222 35678999999988899999999999999999999999999999999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCC------------C---------------------------------cEEe
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTV------------P---------------------------------LHIL 298 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------~---------------------------------~~~~ 298 (406)
+.|-+.|. .+++.+.|++++||+.+..-. | ...+
T Consensus 348 i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 348 ITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred eEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh
Confidence 99999999 899999999999999876321 0 1123
Q ss_pred cCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 299 SSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 299 ~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
.+|. +.-..+.|+|+|+ +|++|+.||.+.+||.++ ..++..+.+|..++..+.|+|..+..+|
T Consensus 427 eGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt--------------~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKT--------------TKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cceeccCceeeEEEcCCCC-eEEeecCCccEEEeechh--------------hhhhhccccCCcceEEEEecCCCcceeE
Confidence 3443 2356789999998 599999999999999987 4677778899999999999999888899
Q ss_pred EEeCCCcEEEEe
Q 015484 377 SVADDNTVQVWQ 388 (406)
Q Consensus 377 s~~~dg~i~iw~ 388 (406)
|++.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=239.14 Aligned_cols=254 Identities=20% Similarity=0.327 Sum_probs=219.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|++.|+.+.|+|+| .+||+|+.|..|.+|++.. .++....+++|++.|..+.|.+++. .|++++.|
T Consensus 41 m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g-------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtD 111 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG-------DCENFWVLKGHSGAVMELHGMRDGS-HILSCGTD 111 (338)
T ss_pred hhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc-------cccceeeeccccceeEeeeeccCCC-EEEEecCC
Confidence 3467899999999999988 6899999999999999776 3555778889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|+.||+++++.. ..++.|..-|+.+.-+..+..++.+++.||++++||+|+...++++. .+-+++++.|..
T Consensus 112 k~v~~wD~~tG~~~------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d 184 (338)
T KOG0265|consen 112 KTVRGWDAETGKRI------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD 184 (338)
T ss_pred ceEEEEecccceee------ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc
Confidence 99999999998653 56678999999988666677889999999999999999999888875 466799999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.+. .+.+|+-|+.|++||+|.... ...+.+|...|+.+..+|+|. .+.+-+.|.++++||++.....
T Consensus 185 ~s~-qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~---------- 251 (338)
T KOG0265|consen 185 TSD-QVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS---------- 251 (338)
T ss_pred ccc-ceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC----------
Confidence 888 899999999999999998665 899999999999999999998 5889999999999999864321
Q ss_pred CeeEEEecCCC----CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 349 PELLFSHGGHK----AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 349 ~~~~~~~~~h~----~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++..+.+|. .....++|+|++. .+.+|+.|..+++||....
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR 298 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc
Confidence 23455555553 3456789999999 5899999999999999874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=234.34 Aligned_cols=249 Identities=20% Similarity=0.399 Sum_probs=214.0
Q ss_pred eEEEEcCCCCcEEEEEeC-------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 119 NRARCMPQKPNLVGTKTS-------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.++.|+|--.+.||++.. .|++.|.++..... ......+ .-.+.+..++|++...+.+++++.||++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-----i~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-----IQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-----eEEEEee-ecccceeEeeecCCCcceEEEEecCceE
Confidence 578899965555665543 68899999974221 1112222 3457899999999988899999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
++||+.... .++..++.|...|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|...+|+|..+
T Consensus 86 rl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 86 RLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred EEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 999955432 367888999999999999998899999999999999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
+++++++.|+.+++||+|.....+. +..|...+.++.|+..++++++||+.|+.|++||+++.. ..
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------------~p 226 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------------TP 226 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-------------cc
Confidence 8999999999999999998877444 889999999999999999999999999999999999843 45
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+.+|.-.|..+.|||....+|+|++.|-+++||++..+
T Consensus 227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 227 LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 77889999999999999998889999999999999999854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=245.87 Aligned_cols=254 Identities=22% Similarity=0.382 Sum_probs=228.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|..+|+.+-|+|.- .++++++.|++|++||..++ .....+++|...+..|+|+..|. +|++++.|
T Consensus 102 ~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg--------~~e~~LrGHt~sv~di~~~a~Gk-~l~tcSsD 171 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETG--------ELERSLRGHTDSVFDISFDASGK-YLATCSSD 171 (406)
T ss_pred hhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccch--------hhhhhhhccccceeEEEEecCcc-EEEecCCc
Confidence 4566799999999999988 58999999999999999984 33778999999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
-.+++||..+. .+++....+|...|.+++|-| .+..+++++.|.+|+.|++.++-++.++.+|...|..++.+.
T Consensus 172 l~~~LWd~~~~-----~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 172 LSAKLWDFDTF-----FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred cchhheeHHHH-----HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 99999998763 345566778999999999999 568899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC--------------CCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN--------------HETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~--------------~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|. ++|+++.|.+|++|-+.+... ...+..|..+|-+++|.|. +..++++++.|++|++||+..
T Consensus 246 DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 246 DGT-IIASCSNDQTLRVWVVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred Cee-EEEecCCCceEEEEEeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 999 999999999999999988654 6778899999999999874 124799999999999999998
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
+.+++++.+|...|.+++|+|.|+| |+|+.+|+++++||+.++.+.
T Consensus 324 --------------g~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 324 --------------GMCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred --------------CeEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceee
Confidence 6899999999999999999999995 889999999999999998654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=245.36 Aligned_cols=250 Identities=25% Similarity=0.401 Sum_probs=223.1
Q ss_pred EEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+..+.+ +|.+-|.|+++.|-+ ..+++|+.|++|.|||+.++ +...++.+|...|..+++|+-.. +|+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHp-YlFs~ 211 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHP-YLFSA 211 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCc-eEEEe
Confidence 334333 699999999999987 79999999999999999984 34678999999999999999888 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.|+.|+.||++..+. ++.+.+|-+.|.|++.+| .-..+++|+.|..+++||+|+...+..+.+|..+|.++.
T Consensus 212 gedk~VKCwDLe~nkv------IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKV------IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred cCCCeeEEEechhhhh------HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 9999999999988643 466788999999999999 678888999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+.|.++ .+++|+.|++|++||++.++. ...+..|...|.+++.+|... ++|+++.| .|+-|++..
T Consensus 285 ~~~~dp-qvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~----------- 349 (460)
T KOG0285|consen 285 CQPTDP-QVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPE----------- 349 (460)
T ss_pred eecCCC-ceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCc-----------
Confidence 999888 899999999999999999776 778889999999999999985 68888877 689999976
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++.+.++ ++++|++.|.+.+||..++.
T Consensus 350 ---g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 350 ---GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred ---cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCc
Confidence 35566678999999999999887 68899999999999998874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=245.77 Aligned_cols=253 Identities=23% Similarity=0.363 Sum_probs=216.3
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.....+|+|.|.|+.|.. .++++|+.|.+|+|||.++ ..++.++.+|...|..+.|+. . ++++++.
T Consensus 230 ~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t--------ge~l~tlihHceaVLhlrf~n--g-~mvtcSk 295 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT--------GEPLNTLIHHCEAVLHLRFSN--G-YMVTCSK 295 (499)
T ss_pred HHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC--------CchhhHHhhhcceeEEEEEeC--C-EEEEecC
Confidence 345679999999999975 5899999999999999998 466888999999999999973 3 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|.+|.+||+.... .+.+...+.+|..+|+.+.|+ .+++++++.|.+|++|++.+.+.+.++.+|...|-|+++.
T Consensus 296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR 369 (499)
T ss_pred CceeEEEeccCch---HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc
Confidence 9999999998864 334557778999999999996 5699999999999999999999999999999999999885
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
++ ++++|+.|.+|++||+..+.. +..+.+|..-|.++.|... -+++|+.||+|+|||+.....+....
T Consensus 370 --~r-lvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~----- 437 (499)
T KOG0281|consen 370 --DR-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA----- 437 (499)
T ss_pred --Ce-EEEecCCCceEEEEeccccHH-HHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc-----
Confidence 55 999999999999999999776 8899999999999999854 39999999999999998744332111
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...++.....|.+.|..+.|..- .+++++.|..|-|||+.++.-.
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence 12345556678999999999754 5888899999999999887643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=261.19 Aligned_cols=260 Identities=19% Similarity=0.288 Sum_probs=227.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|.++....+| .+|++|+.|.++++|.+++... ...+.....+|+..|.+++++..+..+|+++|.|+
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc----hhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 456899999999966667 7999999999999999954322 23456667899999999999988888999999999
Q ss_pred eEEEEeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 190 KICLWDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
++++|++...+... .+.+......|...|++++.+| +..++|+|+.|.+.+||++.+......+.+|+..|.++.|
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 99999998733322 1222224457999999999999 8999999999999999999998989999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|..+ +++|++.|++|+||.+.+..+ +.++.+|...|..+.|-.++.. |++++.||.|++|++.+
T Consensus 514 s~~dq-~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt------------ 578 (775)
T KOG0319|consen 514 SKNDQ-LLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKT------------ 578 (775)
T ss_pred ccccc-eeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccc------------
Confidence 99988 999999999999999999776 9999999999999999999974 99999999999999998
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..++.+|.+.|++++-+|.+. +++||+.||.|.+|.=.+..
T Consensus 579 --~eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 579 --NECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred --hhhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCcHH
Confidence 567788899999999999999998 79999999999999755543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=251.20 Aligned_cols=267 Identities=16% Similarity=0.279 Sum_probs=215.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
+.+.-+|...+++++++||| .++|||+.||+|+|||... .-+..++..|+..|+++.|+..+. .+++++.
T Consensus 343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S--------gfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS--------GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC--------ceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 35566899999999999999 6899999999999999988 345889999999999999999988 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
||+|+.||+.....- +++.. ......|++..| .+.++++|+.|. .|.+|++++|+.+..+.+|.++|.+++
T Consensus 413 DGtVRAwDlkRYrNf------RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNF------RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS 485 (893)
T ss_pred CCeEEeeeeccccee------eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence 999999999876443 33332 234567888888 678887777664 599999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA- 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 344 (406)
|+|.+. .|++++.|.+|++||+-.....+.++. +...+..++|.|+|+. |++++.||.|.+||.....+.......
T Consensus 486 f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 486 FSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred EccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchh
Confidence 999999 999999999999999976544344443 5778999999999985 999999999999999764432111111
Q ss_pred --cCC---CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 345 --EDG---PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 345 --~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
..+ ...............+.+++++||. .+++||..+.|.||++.++.+.
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEECchhhee
Confidence 111 1112222233456799999999999 6888999999999999998653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=239.77 Aligned_cols=286 Identities=20% Similarity=0.311 Sum_probs=220.9
Q ss_pred EEEEeCC-CCCCCCCCCCCCCCC----CCCCeEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc
Q 015484 80 IADAVLP-TKDSESNVGGKNENP----VIPKVEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ 153 (406)
Q Consensus 80 i~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 153 (406)
|.++.|. ..+-++.++.++ .. +.|+|+....+. |..-|+|++|+|+| .++|+.+.||+|.+||-.++..
T Consensus 150 ins~~~KpsRPfRi~T~sdD-n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~--- 224 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDD-NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEK--- 224 (603)
T ss_pred EeeeeccCCCceEEEeccCC-CeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccE---
Confidence 3455543 233445544433 22 568888777665 88999999999998 6899999999999999988543
Q ss_pred CCCCCceeee---CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee-------------------------
Q 015484 154 DDCDPDLRLK---GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI------------------------- 205 (406)
Q Consensus 154 ~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------- 205 (406)
+..+. +|++.|++++|+|++. .++|++.|.+++|||+.+.+..+.+
T Consensus 225 -----vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 225 -----VGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred -----EEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 44454 8999999999999999 9999999999999999875332111
Q ss_pred ------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccC--------------
Q 015484 206 ------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHE-------------- 258 (406)
Q Consensus 206 ------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~-------------- 258 (406)
.++..+.+|...|+++..+| ++..|++|+.||.|.-||..++..-... ..|.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 22356778999999999999 5699999999999999998654321100 0000
Q ss_pred ------------------------------------------------------------------CCeeEEEecCCCCc
Q 015484 259 ------------------------------------------------------------------KEVNYLSFNPYNEW 272 (406)
Q Consensus 259 ------------------------------------------------------------------~~v~~i~~~~~~~~ 272 (406)
-...+++++|++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~- 456 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS- 456 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-
Confidence 0134677788887
Q ss_pred EEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 273 VLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
.+++|+.||.|++|.+.... ........|.++|++++++|++. +||+|...+.+.+||+.+... .
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~-------------~ 522 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREV-------------K 522 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCce-------------e
Confidence 89999999999999998754 33456778999999999999997 699999999999999987321 1
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.....-|...|.+++|+|+.. ++|+|+-|..|.||++....
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred cceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh
Confidence 112233889999999999999 89999999999999998653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=233.67 Aligned_cols=273 Identities=21% Similarity=0.355 Sum_probs=222.9
Q ss_pred EEeCCCCCCCCCCCCCCCCC---CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCC
Q 015484 82 DAVLPTKDSESNVGGKNENP---VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDP 158 (406)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 158 (406)
.+....++..+.+|..+... ....-.+...-.|+++|.+++|+..| .+|++++.||++.+||..++..
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~-------- 310 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTV-------- 310 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceE--------
Confidence 56666666666655444100 01111112233599999999999999 7899999999999999987422
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+.-|..+...|.|-.+. .+++++.||.|+++.+.... |..++.+|.++|+++.|+| .+.+|++++.|+
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWNP-TGSLLASCSDDG 381 (524)
T ss_pred EEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC------cceeeecccCceEEEEECC-CCceEEEecCCC
Confidence 44566688887889998654 59999999999999987643 4577788999999999999 689999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCC--------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE--------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
+++||.+........+.+|...|..+.|+|.|+ ..+++++.|++|++||+..+. ++..+..|+.+|.+++|
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAF 460 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEe
Confidence 999999999999999999999999999999754 379999999999999999865 49999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+|+++ ++|+|+.||.|.||+... .+++....+ .+.|..++|+.+|. .|+.+-.|+.+.+-|+.
T Consensus 461 S~~g~-ylAsGs~dg~V~iws~~~--------------~~l~~s~~~-~~~Ifel~Wn~~G~-kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 461 SPNGR-YLASGSLDGCVHIWSTKT--------------GKLVKSYQG-TGGIFELCWNAAGD-KLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCc-EEEecCCCCeeEeccccc--------------hheeEeecC-CCeEEEEEEcCCCC-EEEEEecCCCceEEEec
Confidence 99998 599999999999999987 455555554 55699999999998 46666779999998864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=255.68 Aligned_cols=249 Identities=26% Similarity=0.419 Sum_probs=211.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|...|.++.|+|+| ..+++++.++.+++|+...... .....+.+|...|.+++|+|++. ++++|+.|++|++
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiri 229 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRI 229 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCc-EEEEecCCceEEE
Confidence 36899999999999 4699999999999999965321 23556689999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.... ..+..+.+|...|++++|+|.+ +++++|+.|++|++||+++++++..+.+|...|++++|++++. +
T Consensus 230 wd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~ 302 (456)
T KOG0266|consen 230 WDLKDDG-----RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-L 302 (456)
T ss_pred eeccCCC-----eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-E
Confidence 9994321 2457788999999999999965 9999999999999999999999999999999999999999999 8
Q ss_pred EEEEeCCCcEEEEeCCCCCC-CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 274 LATASSDTTVALFDMRKMTV-PLHILSSHTEE--VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
|++++.|+.|++||+.++.. .+..+..+... ++.+.|+|++. ++++++.|+.+++||+.. ..
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~--------------~~ 367 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRS--------------GK 367 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccC--------------Cc
Confidence 99999999999999998763 24556655555 99999999998 599999999999999997 34
Q ss_pred eEEEecCCCCC---eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 351 LLFSHGGHKAK---ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 351 ~~~~~~~h~~~---v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
......+|... +.+...++.+. .+++|+.|+.|++|++.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred ceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccc
Confidence 44455556553 44455577888 69999999999999999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=233.89 Aligned_cols=248 Identities=23% Similarity=0.362 Sum_probs=223.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.-..+|...|..|+|+..| .+||+++.|-.+.+||.+.. ......+.+|...|.++.|-|.|. +|++++.|
T Consensus 144 ~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD 214 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRD 214 (406)
T ss_pred hhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH-------HHHHHHhcCcccceeeEEEEecCC-eeeecccc
Confidence 3455899999999999999 68999999999999999873 344677889999999999999997 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|+.|++.++- ++.++.+|...|..++.+- ++.++++++.|.+|++|-+.++++...+..|+.+|-+++|.|
T Consensus 215 ~tik~We~~tg~------cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 215 NTIKAWECDTGY------CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred cceeEEecccce------eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc
Confidence 999999999874 4577889999999999985 899999999999999999999999899999999999999987
Q ss_pred CC--------------CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YN--------------EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~--------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.. ..++++++.|++|++||+.++.. +.++.+|...|..++|+|.|+ +|+++.+|+++++||+.+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEecc
Confidence 51 13899999999999999999766 889999999999999999998 599999999999999997
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.+++.....|...|+++.|+.+.+ .++||+-|..+++|..
T Consensus 366 --------------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 --------------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred --------------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 466777788999999999999999 5999999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=227.04 Aligned_cols=249 Identities=19% Similarity=0.330 Sum_probs=211.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.+.....|++.|.+++.+|+. +++|||+.|...+||++.++ .....+.+|+..|+++.|+.+|. +||||+
T Consensus 56 S~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~Fshdgt-lLATGd 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGT-LLATGD 125 (399)
T ss_pred ceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCce-EEEecC
Confidence 345567899999999999966 79999999999999999984 34778999999999999999999 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.+|.|+||...++..... +...-..|.-+.||| ...+|++|+.||.+-+|.+..+...+.+.+|..++++-.|
T Consensus 126 msG~v~v~~~stg~~~~~------~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWK------LDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCccEEEEEcccCceEEE------eecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 999999999998754322 223445678889999 7899999999999999999998888889999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCC----------------------------------------------------
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVP---------------------------------------------------- 294 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------------------- 294 (406)
.|+|+ .++++..||+|++|++.++...
T Consensus 199 ~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~ 277 (399)
T KOG0296|consen 199 IPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPE 277 (399)
T ss_pred cCCCc-eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcc
Confidence 99999 8999999999999999875321
Q ss_pred ------------------------------------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 295 ------------------------------------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 295 ------------------------------------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
++..-.|...|..+.|-+ .. +|++++.+|.|+.||.
T Consensus 278 l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 278 LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDA 355 (399)
T ss_pred ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc-hheeeccCceEEeeec
Confidence 222334666677777777 33 3667777777777777
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++ .++++.+.||...|.+++.+|+.+ +++|++.|+..+|+++.
T Consensus 356 Rt--------------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 356 RT--------------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred cc--------------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 76 688999999999999999999999 79999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=249.32 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=220.8
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|+..|.++.|+|..| .++++-..|.|.||+.++. ..+..+.....+|.+..|-+-.+ .+++|+.|..|+
T Consensus 11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~Ir 80 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIR 80 (794)
T ss_pred ccCCceeeeecCCCCc-eEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccc-eEEEecCCceEE
Confidence 4889999999999997 6777789999999999984 33666777788999999998666 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+|+.++... +..|..|..-|.+|+.||+ ..+++++++|-.|++||-+.+ .+.+++.+|...|.+++|+|...
T Consensus 81 Vfnynt~ek------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 81 VFNYNTGEK------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EEeccccee------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 999998754 4778899999999999994 667779999999999998865 45788899999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+.+|+++-|++|+||.+.+.. |..++.+|...|+++.+-+.|. -+|++|+.|.+|+|||..+ ..
T Consensus 154 ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--------------k~ 218 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--------------KS 218 (794)
T ss_pred cceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------------HH
Confidence 899999999999999999854 5899999999999999987652 2699999999999999987 57
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
++.++.||...|..+.|+|.-+ +++||++||+++||+-.+-.++
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence 7888899999999999999999 8999999999999998775544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=234.99 Aligned_cols=276 Identities=16% Similarity=0.259 Sum_probs=215.4
Q ss_pred EEeCCCCCCCCCCCCCC------CCCCCCCeEEEE-EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC
Q 015484 82 DAVLPTKDSESNVGGKN------ENPVIPKVEIAQ-KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD 154 (406)
Q Consensus 82 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 154 (406)
-+.|+++++.++++..+ +...+..+++.+ ..+|..+|.-|.|+|+. ++|++|+.+-.+.+||..++..
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~---- 303 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDL---- 303 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchh----
Confidence 44555555555543322 111334466554 45799999999999999 5677788888899999998533
Q ss_pred CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEE
Q 015484 155 DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 155 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~ 232 (406)
...+ .+|...+.+++|.|+|. .+++|+.|+++..||++.... ..+.+. ...|.+++..+ +++.++
T Consensus 304 ----~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~-------~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 304 ----RHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNIL-------GNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred ----hhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchh-------hcccccccceeEEEEEcC-CCcEEE
Confidence 2222 23567899999999999 899999999999999976421 112221 24689999998 677777
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC--eEEEEE
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE--VFQVEW 310 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~--v~~i~~ 310 (406)
+.+.|..|++++..+......+. ...+|++++.+.++. ++++.-.+..+++||+..... +..+.+|+.. +..-+|
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhhH-HHHhhcccccceEEEecc
Confidence 88899999999988766554443 567899999999999 777788899999999996444 7778888764 555577
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
-.....++++|++|+.|+||+..+ ..++..+.||...|++++|+|..+.++||+|.||+|+||.+.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~s--------------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRIS--------------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccC--------------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 766667899999999999999887 578899999999999999999999999999999999999887
Q ss_pred Cc
Q 015484 391 DS 392 (406)
Q Consensus 391 ~~ 392 (406)
..
T Consensus 514 ~~ 515 (519)
T KOG0293|consen 514 DN 515 (519)
T ss_pred cc
Confidence 54
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=215.72 Aligned_cols=240 Identities=16% Similarity=0.313 Sum_probs=203.6
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 205 (406)
+.+-+|++++.|.+|++|...+ ..+..+++...+.|..+...|+++ .|++|+. ..|++||+++.+..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~t--------G~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~--- 74 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALT--------GICSRTIQHPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPN--- 74 (311)
T ss_pred CCceEEEeccCcceeeeeehhc--------CeEEEEEecCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCC---
Confidence 3456899999999999999988 455778888889999999999988 8888865 68999999997643
Q ss_pred eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
++..+.+|...|+++.|.. +++.+++|++||+++|||+|...+.+.+. +..+|+++..+|+.. -|++|..+|.|++
T Consensus 75 -Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irv 150 (311)
T KOG0315|consen 75 -PVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRV 150 (311)
T ss_pred -ceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEE
Confidence 5678899999999999997 79999999999999999999966655555 679999999999887 8999999999999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
||++.....-..+..-...|.++...|+|. +|+++...|..++|++-. ... ..+.+++..++.|...+..+
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~-~~~-------~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLN-HQT-------ASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccC-CCc-------cccceEhhheecccceEEEE
Confidence 999986543333444557899999999997 689999999999999976 211 12345666788999999999
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+||+++ .||+++.|..++||+.++-
T Consensus 222 ~lSPd~k-~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 222 LLSPDVK-YLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EECCCCc-EEEeecCCceEEEEecCCc
Confidence 9999999 5999999999999999877
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=268.14 Aligned_cols=260 Identities=20% Similarity=0.320 Sum_probs=210.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.+.|++++|+|++ .+||+|+.|+.|+||+.............+...+. +...+.+++|++....+|++++.||+|+
T Consensus 481 ~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 481 NSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 488999999999998 68999999999999998642111101112233333 3567999999986555999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||+.+++ .+..+.+|...|++++|+|.++.+|++|+.||.|++||++++..+..+.. ...+.++.|++....
T Consensus 559 lWd~~~~~------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 559 VWDVARSQ------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGR 631 (793)
T ss_pred EEECCCCe------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCC
Confidence 99998753 23556789999999999986788999999999999999999888777764 467899999654333
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
+|++|+.||.|++||+++...++..+.+|...|.++.|. ++. .|++++.|+.|+|||++..... .....+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~--------~~~~~l 701 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG--------INETPL 701 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc--------cCCcce
Confidence 999999999999999998776678888999999999997 444 6999999999999999752110 012456
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+.+|...+..++|+|++. +|++|+.|+.|++|+....
T Consensus 702 ~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 702 HSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCC
Confidence 67889999999999999998 6999999999999997644
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=230.85 Aligned_cols=258 Identities=22% Similarity=0.384 Sum_probs=217.5
Q ss_pred EEEeecCCceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....+|.++|.+++|.-.+ ...|++++.|.++++|..+.+... ........||...|-+++..+++. .+++|+
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~----~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS 212 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK----VKALKVCRGHKRSVDSVSVDSSGT-RFCSGS 212 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh----hhHHhHhcccccceeEEEecCCCC-eEEeec
Confidence 4566899999998887543 236999999999999999875442 223344459999999999999998 999999
Q ss_pred CCCeEEEEeCCCc-------------------cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 187 HDNKICLWDVSAL-------------------AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 187 ~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.|.+|.+|+..+. +....-.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeec
Confidence 9999999994321 01112245677899999999999996 67788999999999999999
Q ss_pred CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 248 NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
+....++. ....+++++.+|... +|++|+.|..|++||.|++. .+...+.+|++.|.++.|+|...++|++++.|+
T Consensus 291 g~~~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 291 GGLKSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred ccceeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 99888776 356789999999888 99999999999999999864 346778999999999999999999999999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++++||++. +...++.+.+|...|.++.|+..+ .+++||.|+.|+|+.-.
T Consensus 369 t~klWDvRS-------------~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRS-------------TKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEecc-------------CCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 999999998 234788899999999999999765 59999999999998754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=229.43 Aligned_cols=280 Identities=24% Similarity=0.397 Sum_probs=228.3
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCc
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGE 117 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 117 (406)
-|..++.|.|+. ..++.|+. .+.+.++++.-. -.......|...
T Consensus 10 ~~i~~~~~~~~~------------~~l~~~~~-----~g~i~i~~~~~~-------------------~~~~~~~~~~~~ 53 (289)
T cd00200 10 GGVTCVAFSPDG------------KLLATGSG-----DGTIKVWDLETG-------------------ELLRTLKGHTGP 53 (289)
T ss_pred CCEEEEEEcCCC------------CEEEEeec-----CcEEEEEEeeCC-------------------CcEEEEecCCcc
Confidence 478899998741 24555553 467888765511 012334568889
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+..+.|+|++ .++++++.+|.|++|++... .....+..|...+.++.|++++. ++++++.+|.|.+||+.
T Consensus 54 i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 54 VRDVAASADG-TYLASGSSDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVE 123 (289)
T ss_pred eeEEEECCCC-CEEEEEcCCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECC
Confidence 9999999998 67999999999999999873 33566778999999999999866 88888889999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
+.+. ...+..|...+.+++|+| ++.++++++.+|.|++||+++++....+..+...+.+++|+|++. .++++
T Consensus 124 ~~~~------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 195 (289)
T cd00200 124 TGKC------LTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSS 195 (289)
T ss_pred CcEE------EEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEe
Confidence 6432 344557888999999998 478887877799999999998888888888888999999999998 78888
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
+.++.|++||++.... +..+..|...+.++.|+|++. ++++++.||.|++||+.. ......+.+
T Consensus 196 ~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~--------------~~~~~~~~~ 259 (289)
T cd00200 196 SSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT--------------GECVQTLSG 259 (289)
T ss_pred cCCCcEEEEECCCCce-ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCC--------------ceeEEEccc
Confidence 8899999999987544 666778889999999999964 688888899999999976 244555668
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|...|.+++|+|+++ .+++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 888999999999988 688999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=248.56 Aligned_cols=257 Identities=22% Similarity=0.408 Sum_probs=221.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+..+..++|..++|.....++||+++..+.+++|++.+.. ...+.+|+..|.+++...+|. +|+||+.|.
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~-llat~sKD~ 387 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---------CQIIPGHTEAVLSLDVWSSGD-LLATGSKDK 387 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc---------eEEEeCchhheeeeeecccCc-EEEEecCCc
Confidence 3446789999999987655789999999999999887732 237889999999999555576 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---------cccccccCCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---------QQRVKAHEKE 260 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~ 260 (406)
++++|.+++... ...++....+|...|.+++++..+..+|++++.|+++++|++...+. ......|...
T Consensus 388 svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 999999955432 23345667889999999999887889999999999999999986221 1123679999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++++.+|+.. ++|||+.|.+.+||++..... ...+.+|+..|.++.|+|..+ +++|+|.|++|+||.+.+
T Consensus 466 IN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l-~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~------ 536 (775)
T KOG0319|consen 466 INCVAIAPNDK-LIATGSQDKTAKIWDLEQLRL-LGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST------ 536 (775)
T ss_pred ccceEecCCCc-eEEecccccceeeecccCceE-EEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEecc------
Confidence 99999999998 999999999999999996544 889999999999999999986 799999999999999997
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
..++.++.||...|..+.|-.++. .|+|++.||.|++|++.++.+..
T Consensus 537 --------fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 537 --------FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred --------ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhh
Confidence 688899999999999999999999 68999999999999999997754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=255.10 Aligned_cols=248 Identities=24% Similarity=0.405 Sum_probs=217.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+..|..++|+|..| .++++--.|.|++||.+- +..+..+..|.++|.+++|+|.++ ++++|+.|-.|++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkV 77 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKV 77 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEE
Confidence 457899999999996 688889999999999987 344778899999999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
|+..+.+ ++.++.+|-.-|..+.||+ .-..++++++|.+|+||+..+++++..+.+|...|.|.+|+|... +
T Consensus 78 WnYk~rr------clftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-l 149 (1202)
T KOG0292|consen 78 WNYKTRR------CLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-L 149 (1202)
T ss_pred Eecccce------ehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-e
Confidence 9998754 4577789999999999998 667788999999999999999999999999999999999999888 9
Q ss_pred EEEEeCCCcEEEEeCCCCCC----------------------------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 274 LATASSDTTVALFDMRKMTV----------------------------PLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~----------------------------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
+++++-|.+|+|||+..... ..+.+.+|...|+-++|+|.-+ ++++|+.|.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDR 228 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDR 228 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcc
Confidence 99999999999999864221 1245678999999999999998 799999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.|++|.+.... .--+-+..||.+.|.++-|+|... ++.|.|+|++|+|||+....
T Consensus 229 qVKlWrmnetK------------aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 229 QVKLWRMNETK------------AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeeEEEecccc------------ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence 99999987521 122345679999999999999877 89999999999999998763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=218.97 Aligned_cols=243 Identities=23% Similarity=0.385 Sum_probs=209.3
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|+++|..+.|++++ +.|++++.|.+|+.||.+++ +....+++|..-|.++.-+.-|..++.+|+.||++
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG--------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETG--------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEecccc--------eeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 3899999999999999 67999999999999999984 44778899999999999666677688999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
++||+++.... +++ ..+..++++.|.. ....+.+|+-|+.|++||++.+.....+.+|...|+.+..+|.|.
T Consensus 158 kl~D~R~k~~~------~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 158 KLWDIRKKEAI------KTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred EEEeecccchh------hcc-ccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence 99999975433 222 2356799999995 566777999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCC----CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 272 WVLATASSDTTVALFDMRKMT---VPLHILSSHTE----EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~----~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
++.+-+.|.++++||+|-.. ..+..+.+|.. ....++|+|++. .+.+|+.|..+++||...
T Consensus 230 -~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~---------- 297 (338)
T KOG0265|consen 230 -FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS---------- 297 (338)
T ss_pred -ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc----------
Confidence 89999999999999998643 22566666543 466789999997 599999999999999876
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...++.+.||.+.|..+.|+|..+ +|.+++.|.+|.+=.
T Consensus 298 ----r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 ----RRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred ----ccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEeec
Confidence 578899999999999999999999 899999999988743
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=213.74 Aligned_cols=247 Identities=21% Similarity=0.256 Sum_probs=210.6
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...-.|+++|+.++|+-+| ++.++++.|.+|++|+... ...++++.+|..+|..++.+.++. .|++|+.|
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r--------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgD 80 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR--------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGD 80 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc--------cceeeeecCCCceeeecccccccc-ccccCCCC
Confidence 3344689999999999999 7899999999999999987 345889999999999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccccccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~ 266 (406)
..+.+||+++++. .+.+.+|.+.|+.++|+. ....+++|+-|.++++||.|+. ++++.+......|.++..
T Consensus 81 k~v~vwDV~TGkv------~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKV------DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCee------eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 9999999999864 467789999999999997 7899999999999999999875 567888778889999998
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+.. .+++|+.||+++.||+|.+... ...-..+|++++|+++++ ..++++.|+++++.|-.+
T Consensus 154 ~~h---eIvaGS~DGtvRtydiR~G~l~---sDy~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~t------------ 214 (307)
T KOG0316|consen 154 AEH---EIVAGSVDGTVRTYDIRKGTLS---SDYFGHPITSVSFSKDGN-CSLASSLDSTLRLLDKET------------ 214 (307)
T ss_pred ccc---EEEeeccCCcEEEEEeecceee---hhhcCCcceeEEecCCCC-EEEEeeccceeeecccch------------
Confidence 743 7999999999999999987642 223357899999999997 688899999999999887
Q ss_pred CCCeeEEEecCCCCCee--eEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~--~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+++..+.||...=. +.+++.... .+++|++||.|.+||+.++..
T Consensus 215 --GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 215 --GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred --hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecccee
Confidence 567777888876544 445565555 799999999999999987743
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=250.30 Aligned_cols=245 Identities=24% Similarity=0.411 Sum_probs=210.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|...|++++|+|++ .++++++.|++|+|||+.. ......++.+|...|++++|+|.+. ++++|+.|++|
T Consensus 200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~-------~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tv 270 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD-------DGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTV 270 (456)
T ss_pred cccccceeeeEECCCC-cEEEEecCCceEEEeeccC-------CCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcE
Confidence 5799999999999999 5899999999999999944 2345788999999999999999995 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc--ccccccccCC--CeeEEEec
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEK--EVNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~--~v~~i~~~ 267 (406)
++||++++. +...+.+|...|++++|++ ++++|++++.|+.|++||+.++. +...+..+.. ++++++|+
T Consensus 271 riWd~~~~~------~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs 343 (456)
T KOG0266|consen 271 RIWDVRTGE------CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS 343 (456)
T ss_pred EEEeccCCe------EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC
Confidence 999999853 4577789999999999998 78899999999999999999998 4556644444 59999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC---eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE---VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~---v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|++. ++++++.|+.+++||++.... +....+|... +.+...++.+. ++++|+.|+.|.+||+.+
T Consensus 344 p~~~-~ll~~~~d~~~~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s---------- 410 (456)
T KOG0266|consen 344 PNGK-YLLSASLDRTLKLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS---------- 410 (456)
T ss_pred CCCc-EEEEecCCCeEEEEEccCCcc-eeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc----------
Confidence 9999 999999999999999998766 6677777764 33445566776 699999999999999987
Q ss_pred cCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCC
Q 015484 345 EDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVA--DDNTVQVWQMT 390 (406)
Q Consensus 345 ~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~ 390 (406)
...+..+.+| ...+..+.|+|..+ ++++++ .|+.+++|...
T Consensus 411 ----~~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 ----GGILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ----cchhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 3455566788 88899999999998 688887 78999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=233.15 Aligned_cols=235 Identities=18% Similarity=0.343 Sum_probs=203.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.|+.+.. ..+++|..|++|+|||..+ ......+.||++.|.|+.|. .+ .|++|+.|.+|++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd--~r-viisGSSDsTvrv 261 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYD--ER-VIVSGSSDSTVRV 261 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecccc--------HHHHHhhhcCCCcEEeeecc--ce-EEEecCCCceEEE
Confidence 346899999865 3599999999999999988 44477899999999999996 44 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEEEecCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~ 270 (406)
||++++.. +.++..|...|..+.|+ +.++++++.|.++.+||+..... ...+.+|...|+.+.|+.
T Consensus 262 WDv~tge~------l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 262 WDVNTGEP------LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred EeccCCch------hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence 99999854 46667899999999997 57888999999999999987654 344588999999999974
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+ ++++++.|.+|++|++.+.+. +.++.+|+..|.|+.+. + .++++|+.|.+|++||+.. ..
T Consensus 331 k-yIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~--------------G~ 391 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIEC--------------GA 391 (499)
T ss_pred c-eEEEecCCceEEEEeccceee-ehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccc--------------cH
Confidence 3 999999999999999999776 89999999999999875 4 3899999999999999987 56
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
++..+.||..-|.++.|... .+++|+.||+|+|||+..+.-.
T Consensus 392 cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 77788999999999999854 5899999999999999887643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=262.26 Aligned_cols=259 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+.+...|.+++|+|....+||+++.||+|+|||+.+. .....+.+|...|++++|+|.+..+|++|+.||+
T Consensus 528 ~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 34456789999999875578999999999999999873 3356778999999999999744339999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.++.. +..+.. ...+.++.|++.++.+|++|+.||.|++||++..+ ....+.+|...|.++.|. +
T Consensus 600 v~iWd~~~~~~------~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~ 671 (793)
T PLN00181 600 VKLWSINQGVS------IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D 671 (793)
T ss_pred EEEEECCCCcE------EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C
Confidence 99999987543 233333 46799999987678999999999999999998765 456677899999999997 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC-----CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKM-----TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+. +|++++.|+.|++||++.. ..++..+.+|...+..++|+|+++ +|++|+.|+.|++|+.......... ..
T Consensus 672 ~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~-~~ 748 (793)
T PLN00181 672 SS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSY-KF 748 (793)
T ss_pred CC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEE-ec
Confidence 55 8999999999999999853 245788999999999999999987 7999999999999997653211000 00
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.......-.....|...|.+++|+|++. .|++|+.||.|+||++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 0000000011234566799999999999 6899999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=215.81 Aligned_cols=311 Identities=20% Similarity=0.323 Sum_probs=237.2
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC---
Q 015484 61 VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS--- 137 (406)
Q Consensus 61 ~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d--- 137 (406)
-.+|++||+..+.. |+|.+..++ +++ ..+.....+.|.++|..++-+|..+.+|+++..+
T Consensus 26 ~icFlvgTnslK~d-NqVhll~~d--~e~--------------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~ 88 (370)
T KOG1007|consen 26 HICFLVGTNSLKED-NQVHLLRLD--SEG--------------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSD 88 (370)
T ss_pred ceEEEEeccccCCc-ceeEEEEec--Ccc--------------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCC
Confidence 35899999987655 999977555 122 2233344556789999999999988999998763
Q ss_pred ----CeEEEEeCCCcccccc-CCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeee
Q 015484 138 ----CEVYVFDCAKQAEKQQ-DDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHV 210 (406)
Q Consensus 138 ----g~i~iw~~~~~~~~~~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~ 210 (406)
-.+.||.+........ ..+..+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|++...... ..+. ...
T Consensus 89 s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~-ss~ 165 (370)
T KOG1007|consen 89 SGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVL-SSE 165 (370)
T ss_pred CcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeec-ccc
Confidence 2478999987543211 1233344444 3456899999999887 777765 889999999887542 1111 111
Q ss_pred eeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 211 YEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
-..+....++-+|+|. +++.+ ....|+++..||+|+.+....+ .+|...|..+.|+|+.+.+|++|+.||.|++||.
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~ 244 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT 244 (370)
T ss_pred cccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEec
Confidence 1235667888899994 45555 4566899999999998877666 7889999999999999999999999999999999
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-----------c----CCCCeeEE
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-----------E----DGPPELLF 353 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~----~~~~~~~~ 353 (406)
|+.+.|+..+.+|...|.++.|+|....++++++.|..|.+|.......++..... + .-+...+.
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 99999999999999999999999999889999999999999988765432211100 0 01123455
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++..|...|++++|+.-.+|++|+-+.||.+.|=++...
T Consensus 325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 778899999999999999999999999999999877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=229.99 Aligned_cols=246 Identities=27% Similarity=0.453 Sum_probs=209.9
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+|.++|++++|+|++ .+|++++.+|.|++|++... .....+..|...+..+.|++++. +|++++.+|.|+
T Consensus 7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~ 76 (289)
T cd00200 7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIR 76 (289)
T ss_pred ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCC-EEEEEcCCCeEE
Confidence 799999999999998 68999999999999999873 24567788999999999999887 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|++..+.. ...+..|...+.++.|+| ++.++++++.+|.|++||+++++....+..|...+.+++|+|++.
T Consensus 77 i~~~~~~~~------~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 148 (289)
T cd00200 77 LWDLETGEC------VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT- 148 (289)
T ss_pred EEEcCcccc------eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-
Confidence 999987532 244557788999999998 477888888899999999998888888888889999999999977
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++++.++.|++||++.... +..+..|...+.++.|+|+++ .+++++.|+.|++||++. ...+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~--------------~~~~ 212 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST--------------GKCL 212 (289)
T ss_pred EEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCC--------------Ccee
Confidence 788887799999999987554 777888888999999999997 477888899999999986 2344
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..|...+.++.|+|++. ++++++.||.|++|++.++.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce
Confidence 44557888999999999976 68888889999999998643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=214.92 Aligned_cols=266 Identities=14% Similarity=0.226 Sum_probs=216.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
+...+|..+++-|.|+.+| .+|.+++.|.++.||--.++ ..+-++.+|++.|+|++.+-+.. .+++|+.|
T Consensus 4 i~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~-~liTGSAD 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSK-HLITGSAD 73 (327)
T ss_pred cccccCccccceEEecCCC-cEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcc-eeeecccc
Confidence 4456899999999999999 79999999999999987663 44788999999999999998887 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-----cCCcEEEEECCC-------Ccccccccc
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-----DDCQLMIWDLRT-------NQTQQRVKA 256 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-----~dg~i~i~d~~~-------~~~~~~~~~ 256 (406)
.++++||+.+++.. ..+. ...+|..+.|++ ++++++.+. ..+.|.++|++. .++...+..
T Consensus 74 ~t~kLWDv~tGk~l------a~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 74 QTAKLWDVETGKQL------ATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ceeEEEEcCCCcEE------EEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999998653 2232 467899999998 566665554 457799999983 444666677
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+.+.++.+-|.|.++ +|++|..||.|..||++++.+.+.....|...|+.++++|+.. +++|++.|.+-++||..+..
T Consensus 146 ~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 146 PDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeecccee
Confidence 889999999999999 9999999999999999998887888889999999999999996 69999999999999998754
Q ss_pred ccccccccc-------------------------------CCCC----------eeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 337 DEQLELDAE-------------------------------DGPP----------ELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 337 ~~~~~~~~~-------------------------------~~~~----------~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......... .+.. +-+-...+|-++|++++|+|+|+ ..
T Consensus 224 v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sY 302 (327)
T KOG0643|consen 224 VLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SY 302 (327)
T ss_pred eEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-cc
Confidence 322110000 0000 11122468999999999999999 69
Q ss_pred EEEeCCCcEEEEeCCCcccC
Q 015484 376 SSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~~~ 395 (406)
+||++||.|++.-+....+.
T Consensus 303 sSGGEDG~VR~h~Fd~~YF~ 322 (327)
T KOG0643|consen 303 SSGGEDGYVRLHHFDSNYFD 322 (327)
T ss_pred ccCCCCceEEEEEeccchhh
Confidence 99999999999987776553
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=239.50 Aligned_cols=257 Identities=16% Similarity=0.340 Sum_probs=215.7
Q ss_pred CCeEEEEEeecC-CceeEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe
Q 015484 104 PKVEIAQKIRVD-GEVNRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181 (406)
Q Consensus 104 ~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 181 (406)
|.+.++..+.-. .+|..++|+..| +.||.|+. -|.+.||+.+... -+...++|...+++++++|+|+ +
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--------YVlKQQgH~~~i~~l~YSpDgq-~ 364 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--------YVLKQQGHSDRITSLAYSPDGQ-L 364 (893)
T ss_pred CCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--------eeeeccccccceeeEEECCCCc-E
Confidence 445555555544 688899999888 57777765 4899999999842 2666789999999999999999 9
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKE 260 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 260 (406)
++||+.||.|+|||..++- |+.+|..|.+.|+.++|+. .++.+++.+-||+|+.||+...+..+++.. ....
T Consensus 365 iaTG~eDgKVKvWn~~Sgf------C~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGF------CFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred EEeccCCCcEEEEeccCce------EEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence 9999999999999998763 5688999999999999997 788899999999999999998888777743 3456
Q ss_pred eeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 261 VNYLSFNPYNEWVLATASSDT-TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
..|++..|.|. ++.+|+.|. .|.+|++.+++. +..+.+|.++|.+++|+|.+. +|++++.|.+|++||+-....
T Consensus 438 fscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~-- 512 (893)
T KOG0291|consen 438 FSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSG-- 512 (893)
T ss_pred eeEEEEcCCCC-EEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCc--
Confidence 78999999999 888888887 799999999776 889999999999999999997 799999999999999976211
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+.++ .+...+..++|+|+|+ -++++.-||.|.+||+..+...
T Consensus 513 -----------~vEtl-~i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 513 -----------TVETL-EIRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred -----------eeeeE-eeccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceee
Confidence 12222 2456799999999999 6899999999999999877543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=225.53 Aligned_cols=268 Identities=16% Similarity=0.261 Sum_probs=219.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH- 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 187 (406)
...-+|..+++-.+|+|.| .++|+|...|+|+|||..... ......++.-.++|..|+|+.++. +|++.++
T Consensus 53 ~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~------hiLKnef~v~aG~I~Di~Wd~ds~-RI~avGEG 124 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKE------HILKNEFQVLAGPIKDISWDFDSK-RIAAVGEG 124 (603)
T ss_pred eeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcc------eeeeeeeeecccccccceeCCCCc-EEEEEecC
Confidence 3455799999999999998 799999999999999998732 233455667789999999999999 5555544
Q ss_pred ---CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 ---DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
-|.+.+||..+. +..+.+|...|+++.|-|..+-.+++|++|+.|.+|+-.--+...++..|..-|+++
T Consensus 125 rerfg~~F~~DSG~S--------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~V 196 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNS--------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCV 196 (603)
T ss_pred ccceeEEEEecCCCc--------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeE
Confidence 256777876542 355678999999999999888899999999999999976666667778899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.|+|+|. ++++.+.||.|.+||-.+++. +..+. +|++.|.+++|+|++.+ ++|++.|.+++|||+.........
T Consensus 197 RysPDG~-~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 197 RYSPDGS-RFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EECCCCC-eEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEe
Confidence 9999999 999999999999999998776 66666 89999999999999985 999999999999999875322111
Q ss_pred cc-----------------------------ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 342 LD-----------------------------AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 342 ~~-----------------------------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.- .....+..+..+.||...|+++..+|++. .|.+|+.||.|.-|+..++
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCc
Confidence 00 00112235666789999999999999998 6899999999999999988
Q ss_pred ccCC
Q 015484 393 IYRD 396 (406)
Q Consensus 393 ~~~~ 396 (406)
...+
T Consensus 353 ~~~~ 356 (603)
T KOG0318|consen 353 TSDR 356 (603)
T ss_pred cccc
Confidence 6543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=237.64 Aligned_cols=238 Identities=22% Similarity=0.333 Sum_probs=205.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.-+|++..|-+.. +.+++|+.|..|+||+..+ ...+..+..|.+.|.+++.+|..+ +++|+|.|-+|++|
T Consensus 55 ~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt--------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 55 EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT--------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLW 124 (794)
T ss_pred ccchhhheeeecc-ceEEEecCCceEEEEeccc--------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEe
Confidence 4678889998876 7999999999999999998 445889999999999999999998 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC-CcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN-EWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~ 273 (406)
|.+.. +.+.+++.+|..-|.+++|+|.+.+.|++++-|++|++|.+.+..+..++.+|...|+|+.+-+-| +-+
T Consensus 125 ~we~~-----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 125 DWENE-----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred eccCc-----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcce
Confidence 98864 556789999999999999999999999999999999999999999999999999999999997754 238
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
|++|+.|.+|+|||..+..+ ++++.+|...|..+.|+|.-+ ++++|++||+++||+-.+... ..
T Consensus 200 lIsgaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~l--------------E~ 263 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKL--------------EK 263 (794)
T ss_pred EEecCCCceEEEeecchHHH-HHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceeh--------------hh
Confidence 99999999999999998665 999999999999999999998 799999999999999876322 22
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
.+.-....|++++-.+.+. .++.|...|.|
T Consensus 264 tLn~gleRvW~I~~~k~~~-~i~vG~Deg~i 293 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDG-KIAVGFDEGSV 293 (794)
T ss_pred hhhcCCceEEEEeecCCCC-eEEEeccCCcE
Confidence 2233345677777777666 46666555543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=239.23 Aligned_cols=261 Identities=15% Similarity=0.285 Sum_probs=191.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----cCC-CCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----QDD-CDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDN 189 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg 189 (406)
..|+....++++.+ +++++.+..+..|+........ .+. ......+.+|.+.|.+++|+| ++. +|++|+.||
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDG 98 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCC
Confidence 44555555666433 4455555555566543321110 000 111234789999999999999 555 999999999
Q ss_pred eEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+|++||+...... ....++..+.+|...|.+++|+|.+.++|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765321 112345677889999999999996678999999999999999999988888888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC-eEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-VFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
++. +|++++.|+.|++||++++.. +..+.+|.+. +..+.|.+++..++.+| +.|+.|++||++.....
T Consensus 179 dG~-lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p------ 250 (493)
T PTZ00421 179 DGS-LLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP------ 250 (493)
T ss_pred CCC-EEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc------
Confidence 998 999999999999999998664 7778888765 45788999887544443 24899999999863321
Q ss_pred cCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~~~~ 394 (406)
+.... .+...+....|++++. +|++++ .|+.|++|++.++..
T Consensus 251 -------~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 251 -------YSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred -------eeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCce
Confidence 11112 2234466678999998 466655 699999999988753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=244.42 Aligned_cols=251 Identities=16% Similarity=0.315 Sum_probs=200.5
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc----------------------------cc-c---c--------
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ----------------------------AE-K---Q-------- 152 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~-~---~-------- 152 (406)
.|.+.|+++.|+++| .+||+|+.||.|+||.+... .. . .
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 69999999999999998760 00 0 0
Q ss_pred ------------cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEE
Q 015484 153 ------------QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220 (406)
Q Consensus 153 ------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (406)
.-..+|+..+.||.+.|..|.|+.++ +|++++.|.+|++|++.... ++..| .|..-|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~------CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE------CLKVF-SHNDFVTC 414 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc------eeeEE-ecCCeeEE
Confidence 01345677889999999999999743 89999999999999998754 34444 48999999
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS- 299 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 299 (406)
|+|+|.+.++|++|+-||.||||++...+.+.-.. -...|++++|.|+|+ ..++|+.+|.+++|+.+..+. .....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-VSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-EEeeeE
Confidence 99999999999999999999999998776544433 347899999999999 899999999999999987553 11111
Q ss_pred --------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCC
Q 015484 300 --------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNK 369 (406)
Q Consensus 300 --------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~ 369 (406)
.|. .|+++.|.|....-++..+.|..|+|||.+. ..++..+.|+.. .-...+|+.
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------------~~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------------KDLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc--------------hhhhhhhcccccCCcceeeeEcc
Confidence 133 7999999987766577788899999999965 234444444332 245678999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+|++ |+++++|..|+||+....
T Consensus 557 Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCE-EEEeecCceEEEEeCCCC
Confidence 9995 888899999999998544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=216.03 Aligned_cols=275 Identities=20% Similarity=0.277 Sum_probs=215.8
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc------cc----CCCCCceeeeCCCCCeeEEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK------QQ----DDCDPDLRLKGHDKEGYGLS 173 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~------~~----~~~~~~~~~~~h~~~v~~l~ 173 (406)
++.+......|++++.+.+|+|+| .++|+|+.|..|+|.|++....+ .. .....+.++..|..+|+++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 456666777899999999999999 79999999999999999832111 10 12244667889999999999
Q ss_pred ecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc
Q 015484 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR 253 (406)
Q Consensus 174 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 253 (406)
|+|... .|++|+.|++|++||+.+....+.++. + ....+|.++.|+| .+.++++|.+-..+++||+.+-++...
T Consensus 180 FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~---~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 180 FHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKV---F-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ecchhh-eEEeccCCCeEEEEecccHHHHHHHHH---h-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee
Confidence 999887 999999999999999987654433322 2 2356899999999 789999999999999999998776433
Q ss_pred c---cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 254 V---KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 254 ~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
- ..|...|+++.+++.++ +.++|+.||.|++||--+..+.-..-.+|.+ .|.+..|..+++ ++++.+.|..+++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkL 331 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKL 331 (430)
T ss_pred cCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceeee
Confidence 3 56889999999999999 9999999999999998876653333345654 699999999998 5889999999999
Q ss_pred EeCCCCCccccccccc-----------------------CCCC------------eeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 330 WDLNRIGDEQLELDAE-----------------------DGPP------------ELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~-----------------------~~~~------------~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
|.+.+........+.. +... +.-.-..+|++.+..+.-+|.++ .
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-A 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-c
Confidence 9998865433222110 0000 00011237999999999999999 6
Q ss_pred EEEEeCCCcEEEEe
Q 015484 375 ISSVADDNTVQVWQ 388 (406)
Q Consensus 375 l~s~~~dg~i~iw~ 388 (406)
+++|+.|-.+++|-
T Consensus 411 FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 411 FMTCSDDFRARFWY 424 (430)
T ss_pred eeeecccceeeeee
Confidence 89999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=217.07 Aligned_cols=264 Identities=21% Similarity=0.328 Sum_probs=220.5
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
+++++. ...+|-..|..+++++..+ ++++++.|+.|+-||+.. .+.+..+.+|-+.|+|++.+|.-. .|
T Consensus 182 tg~Lkl-tltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~--------nkvIR~YhGHlS~V~~L~lhPTld-vl 250 (460)
T KOG0285|consen 182 TGQLKL-TLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY--------NKVIRHYHGHLSGVYCLDLHPTLD-VL 250 (460)
T ss_pred cCeEEE-eecchhheeeeeeecccCc-eEEEecCCCeeEEEechh--------hhhHHHhccccceeEEEeccccce-eE
Confidence 344443 3557999999999999886 788999999999999998 345788999999999999999888 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++|+.|.++++||+++.. .+..+.+|..+|..+.+.|.++. +++|+.|++|++||++.++....+..|...|+
T Consensus 251 ~t~grDst~RvWDiRtr~------~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRA------SVHVLSGHTNPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMITLTHHKKSVR 323 (460)
T ss_pred EecCCcceEEEeeecccc------eEEEecCCCCcceeEEeecCCCc-eEEecCCceEEEeeeccCceeEeeecccceee
Confidence 999999999999999854 34778899999999999996554 56999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++.+|... .+|+++.| .|+-|++..+.. +..+.+|..-|++++.+.++ ++++|++.|.+.+||.+++...+...
T Consensus 324 al~lhP~e~-~fASas~d-nik~w~~p~g~f-~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 324 ALCLHPKEN-LFASASPD-NIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred EEecCCchh-hhhccCCc-cceeccCCccch-hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCccccccc
Confidence 999999877 89998887 599999998765 67799999999999999887 69999999999999999866544321
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.. ..|..+ .....|++.+|...|. .|++|..|.+|++|.-.+..-++
T Consensus 399 t~-vqpGSl-----~sEagI~as~fDktg~-rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 399 TI-VQPGSL-----ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred cc-ccCCcc-----ccccceeEEeecccCc-eEEeccCCcceEEEecccccCcc
Confidence 10 111111 1245699999999998 68999999999999876665443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=219.60 Aligned_cols=255 Identities=22% Similarity=0.329 Sum_probs=211.1
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC--CeEEEe
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE--GYLVSG 185 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~ 185 (406)
....+.|..-|.++.-.+ ..+++|+.||.++||+... +....+.+|.++|.+++|...+. ..|+++
T Consensus 98 pl~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa 165 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA 165 (423)
T ss_pred ccccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEe
Confidence 345667888888888773 5799999999999999986 44778899999999999865443 259999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------------------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------- 246 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------- 246 (406)
+.|.++++|..+.+... ........+|...|.++...+ ++..|++|+.|..|.+|+..
T Consensus 166 s~Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred cCCceEEEEEecCchhh--hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999876532 233444559999999999998 78899999999999999932
Q ss_pred ------CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 247 ------TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 247 ------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
++.++..+.+|..+|.++.|++.+ .+.+++.|.+|+.||+..+.. +..+.. ...++++..+|... +|++
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~-Ll~~ 317 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSK-LLAS 317 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccc-eeee
Confidence 112234568899999999999843 799999999999999998776 444443 57899999999886 8999
Q ss_pred EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|+.|..+++||.+.... ....+.+.+|.+.|.++.|+|...++|++|+.||++++||+.+..
T Consensus 318 gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999999999998432 356678889999999999999999999999999999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-29 Score=235.01 Aligned_cols=237 Identities=17% Similarity=0.272 Sum_probs=181.2
Q ss_pred EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-c-eeeeeeee
Q 015484 134 KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-K-VIDAMHVY 211 (406)
Q Consensus 134 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~-~~~~~~~~ 211 (406)
|+.++.|++|+... ..+...+.+|.+.|.+++|+|+...+|++|+.||+|++||+.+.... . ...++..+
T Consensus 50 GG~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 66788999999876 24577889999999999999974449999999999999999864321 1 11234556
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
.+|...|.+++|+|.+..++++++.|+.|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|+|||++++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC
Confidence 78999999999999766677899999999999999988766665 567899999999999 8999999999999999986
Q ss_pred CCCcEEecCCCCCeEEE-----EEcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 292 TVPLHILSSHTEEVFQV-----EWDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i-----~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
.. +..+.+|.+.+... .|++++. +|++++.|+ .|+|||++.... +.....+..+.+.+
T Consensus 200 ~~-i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~-----------pl~~~~ld~~~~~L 266 (568)
T PTZ00420 200 EI-ASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTS-----------ALVTMSIDNASAPL 266 (568)
T ss_pred cE-EEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCC-----------ceEEEEecCCccce
Confidence 55 67888998765443 3457876 477766553 799999986332 12222333344444
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
......+++. ++++|+.|+.|++|++..+.+
T Consensus 267 ~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 267 IPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEeeeCCCCC-EEEEEECCCeEEEEEccCCcE
Confidence 3344444566 788999999999999987743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=208.41 Aligned_cols=317 Identities=18% Similarity=0.348 Sum_probs=238.2
Q ss_pred hhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE
Q 015484 31 IVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ 110 (406)
Q Consensus 31 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (406)
++++.-+||.+...|.- ..+...|+.+|+.. ....|.|.|.++... . ..+....
T Consensus 38 iy~Y~ap~~lya~~Ws~---------~~~~~~rla~gS~~-Ee~~Nkvqiv~ld~~-----------s-----~e~~~~a 91 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSV---------RPDKKFRLAVGSFI-EEYNNKVQIVQLDED-----------S-----GELVEDA 91 (364)
T ss_pred EEEecCCCceeeecccc---------CCCcceeEEEeeec-cccCCeeEEEEEccC-----------C-----CceeccC
Confidence 56677899999999953 33455799999986 456789988876611 1 2344444
Q ss_pred EeecCCceeEEEEcCCC----CcEEEEEeCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 111 KIRVDGEVNRARCMPQK----PNLVGTKTSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.+.|..+++.+.|.|+. +.+||+++. .+++|.+......... .......-..+..+++++.|+.-..++|.+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 58999999999999975 567887654 4999999853221110 0000111234568999999999888899999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCee
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVN 262 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~ 262 (406)
|-|-+..|||++++... .....+-.|..+|.+|+|...+..+||+++.||++|+||+|..+.-..+ .....+..
T Consensus 170 SiDTTCTiWdie~~~~~---~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSG---TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred cccCeEEEEEEeecccc---ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 99999999999987321 1124556899999999999877899999999999999999987654444 22256788
Q ss_pred EEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 263 YLSFNPYNEWVLATASSDT-TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.++|+++..+++|+-..|+ .|.|.|+|....|+..+..|.+.|+.|+|.|.....|+|++.|..+.|||+.........
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE 326 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence 9999999998999887765 799999999999999999999999999999999889999999999999999875441111
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.+.+.+. ..+.|..+.|++..+.-++.+. ++.+.|-.
T Consensus 327 ------dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiLR 363 (364)
T KOG0290|consen 327 ------DPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEILR 363 (364)
T ss_pred ------Cchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEEe
Confidence 1222322 3457999999976553355544 56666543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=233.19 Aligned_cols=255 Identities=18% Similarity=0.278 Sum_probs=191.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|.+..+||+|+.||+|+||++....... ....+...+.+|...|.+++|+|.+.++|++|+.|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 458999999999999443789999999999999997642211 1124567889999999999999987559999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC-eeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE-VNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~~ 269 (406)
|++||+.++. ....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|... +..+.|.++
T Consensus 150 VrIWDl~tg~------~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 150 VNVWDVERGK------AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEECCCCe------EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 9999998763 2355667899999999999 7889999999999999999999988888777654 456789988
Q ss_pred CCcEEEEEe----CCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCCCccccccc
Q 015484 270 NEWVLATAS----SDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHETVLASSA-DDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 270 ~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+. .+++++ .|+.|++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+....
T Consensus 223 ~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~------- 293 (493)
T PTZ00421 223 KD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNER------- 293 (493)
T ss_pred CC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCc-------
Confidence 77 455443 478999999998777666655443 4566677899987 566665 69999999998622
Q ss_pred ccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++.. ..+..++..++|.|... +-...--..++|.+...
T Consensus 294 -------~~~~~~~~s~~~~~g~~~~pk~~---~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 294 -------LTFCSSYSSVEPHKGLCMMPKWS---LDTRKCEIARFYALTYH 333 (493)
T ss_pred -------eEEEeeccCCCCCcceEeccccc---ccccceeeeEEEEecCC
Confidence 22221 23455677888888632 11122234466665544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=223.41 Aligned_cols=254 Identities=17% Similarity=0.330 Sum_probs=207.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-+|...|.|++=+|.....+|+|+.||.|+|||+.. ..+..++..|.+.|.+|++.. . .+++++.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--------R~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDK 129 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--------RECIRTFKAHEGLVRGICVTQ--T-SFFTVGDDK 129 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh--------hhhhheeecccCceeeEEecc--c-ceEEecCCc
Confidence 34689999999999998767899999999999999987 344788999999999999986 3 788999999
Q ss_pred eEEEEeCCCccC------------------------Cc---e-----eeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 190 KICLWDVSALAQ------------------------DK---V-----IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 190 ~i~iwd~~~~~~------------------------~~---~-----~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
+|+.|-++.... .. . ..++..+.-....|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 999998543100 00 0 012333343446688999999889999999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
+.|.+||+|+..+++.+. ....-+.|+|+| ..+.+++|+.|..++.||+|....|+....+|.+.|.++.|+|.|+.
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E- 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE- 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-
Confidence 999999999999887764 344567899999 45589999999999999999999999999999999999999999985
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+++||.|.+|+||..+..... . ++ +..-...|.++.||.|.+ +++||+.|+.|++|...-
T Consensus 287 fvsgsyDksIRIf~~~~~~SR-----------d-iY-htkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSR-----------D-IY-HTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hccccccceEEEeecCCCcch-----------h-hh-hHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 999999999999999863321 1 11 111234699999999999 589999999999998754
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-31 Score=226.81 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=208.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.+++|+|..|+-+|+.+.- .+.||+... ..+...+......|+++.|..+|+ +|++|+..|.|++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~--------~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVT--------RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKV 94 (487)
T ss_pred ccCcceeEecCCCCCCceEEeccc-EEEEEecch--------hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEE
Confidence 347899999999888777776644 499999887 334555666778999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.+.. .+..+.+|..++..+.|+|+++..|++|++|+.+++||+.+......+.+|+..|.|.+|+|....+
T Consensus 95 fD~k~r~------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 95 FDMKSRV------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred eccccHH------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 9965521 2466788999999999999999999999999999999999888755789999999999999998889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+++|+.||.|++||.|....++..+ .|..+|..+.+-|.|. ++++++ ...|+|||+..++ +++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~-------------qll~ 232 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGG-------------QLLT 232 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCc-------------eehh
Confidence 9999999999999999876545555 5899999999999986 577776 5689999998643 4444
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....|...|+|+++..++. .|+|++-|+.|++|++.+-
T Consensus 233 ~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred hhhcccceEEEEEeecCCc-eEeecccccceEEEEccce
Confidence 5556999999999999988 6899999999999996653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=229.74 Aligned_cols=253 Identities=21% Similarity=0.375 Sum_probs=215.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l 182 (406)
+++.....++ ...|+++.|+++| .+||+|..+|.|.|||.... +....+.+ |...|-+++|+ +. .+
T Consensus 207 ~~v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~--------k~~~~~~~~h~~rvg~laW~--~~-~l 273 (484)
T KOG0305|consen 207 GSVTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQ--------KKTRTLRGSHASRVGSLAWN--SS-VL 273 (484)
T ss_pred CceEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhhc--------cccccccCCcCceeEEEecc--Cc-eE
Confidence 4444444444 8999999999999 68999999999999999873 33556666 99999999998 34 89
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
.+|+.||.|..+|++..+... ..+.+|...|..++|++ ++.++|+|+.|+.+.|||.....+...+..|...|.
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~-----~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVV-----STLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred EEecCCCcEEEEEEecchhhh-----hhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 999999999999999865421 23678999999999998 799999999999999999988888999999999999
Q ss_pred EEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCCccc
Q 015484 263 YLSFNPYNEWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS-ADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~ 339 (406)
.++|+|....+||+|+ .|+.|++||..++.. +..+. -.+.|..+.|++..+.++.+- ..++.|.||++.+
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----- 420 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----- 420 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----
Confidence 9999999888999987 488999999998665 44443 357899999999987655543 3578999999987
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+..+.+|...|..++++|+|. .+++|+.|.++++|++-+.
T Consensus 421 ---------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 ---------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence 467778899999999999999999 6999999999999998774
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=204.34 Aligned_cols=215 Identities=24% Similarity=0.463 Sum_probs=185.4
Q ss_pred ceeeeCCCCCeeEEEecCC-CCCeEEEecCCCeEEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEec
Q 015484 159 DLRLKGHDKEGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
...+++|.+.+..++|+|- |. .|++|+.|..|++|+...+ ..+.+...+ .+|+..|++++|+| .+++|++++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~---~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSF 81 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSG---DSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASF 81 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCC---CcEEEEEeccccchheeeeeeecC-CCcEEEEeec
Confidence 5678899999999999997 55 8999999999999998863 223333333 36899999999999 6889999999
Q ss_pred CCcEEEEECCCC--cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcC
Q 015484 237 DCQLMIWDLRTN--QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 237 dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p 312 (406)
|.++.||.-..+ +++..+.+|...|.+++|+++|. +||+++.|..|-||...... ..+..++.|...|..+.|+|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 999999986654 45788899999999999999999 99999999999999988443 34678899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
... +|++++.|.+|++|+-.. +....++.++.+|...|.+++|++.|. .|++++.|+.++||..-..
T Consensus 161 t~d-lL~S~SYDnTIk~~~~~~-----------dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 161 TED-LLFSCSYDNTIKVYRDED-----------DDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred Ccc-eeEEeccCCeEEEEeecC-----------CCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC
Confidence 986 899999999999998763 123588999999999999999999998 6999999999999995543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=236.27 Aligned_cols=247 Identities=19% Similarity=0.341 Sum_probs=211.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+.-+|.|+|+.+.|+|.++ ++++|+.|-+|+||+... .+++.++.+|-+.|..+.|++.-+ .|+++|.|.
T Consensus 46 rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~--------rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQ 115 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT--------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQ 115 (1202)
T ss_pred hhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc--------ceehhhhccccceeEEeeccCCCc-eEEEccCCC
Confidence 3457999999999999995 899999999999999988 456889999999999999999888 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-------------------
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------------------- 250 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------- 250 (406)
+|+||+..+.+ ++..+.+|..-|.|.+|+| ...++++++-|.+||+||+...+.
T Consensus 116 TIrIWNwqsr~------~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 116 TIRIWNWQSRK------CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred eEEEEeccCCc------eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 99999998864 4577889999999999999 688999999999999999852110
Q ss_pred ----------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 251 ----------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 251 ----------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
...+.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+ -.+.+..+|.+.|.++.|+|..+ +++
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIl 266 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LIL 266 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeE
Confidence 123378999999999999999 99999999999999987543 23667889999999999999986 799
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+.|+|++|+|||+.. ...+.++....+.-+.++-+|..+ ++++ +.|+-+.+|.++.
T Consensus 267 SnsEDksirVwDm~k--------------Rt~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTK--------------RTSVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred ecCCCccEEEEeccc--------------ccceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcc
Confidence 999999999999987 345556655567788999999988 5555 5677788888774
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=217.57 Aligned_cols=270 Identities=18% Similarity=0.297 Sum_probs=215.2
Q ss_pred eEEEEEeecCCceeEEEEcCC------CCcEEEEEeCCCeEEEEeCCCcccccc-------------CCCCCceeeeCCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ------KPNLVGTKTSSCEVYVFDCAKQAEKQQ-------------DDCDPDLRLKGHD 166 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~------~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~~~h~ 166 (406)
+-+..-+--+....|+.|... .++++|.|+.+..|.|||+.-...... ...+....-.+|+
T Consensus 164 lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT 243 (463)
T KOG0270|consen 164 LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT 243 (463)
T ss_pred eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch
Confidence 333444444566677777642 237999999999999999875322110 0011112234799
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
..|.+++|+..-++.||+||.|.+|++||+.+++.. ..+..|...|.++.|+|..+.++++|+.|+++.+.|.|
T Consensus 244 davl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 244 DAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK------SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred HHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc------eehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 999999999988889999999999999999998754 44556899999999999999999999999999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
........-...+.|-.++|+|...+.+++++.||+++-+|+|+...++.++++|.++|.++++++..+.+++|++.|+.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 64433333335678999999999998999999999999999999989999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|++|++.... +..+..+.-..+...|+++.|+-.++++.||..+.++|||+.+..
T Consensus 398 Vklw~~~~~~------------~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 398 VKLWKFDVDS------------PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred EEEEeecCCC------------CcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9999997622 222322222234477889999998899999999999999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=238.90 Aligned_cols=251 Identities=24% Similarity=0.403 Sum_probs=209.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|.....++|||++..|.|.+||+..... .+....+..|...++++.|++...++|++||.||+|++||
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc-----chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 45777889876668999999999999999987321 2335578899999999999999998999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++..+.. .++.+....|.+++|+|..+..|+++.+.|.+.+||+|.... ...+.+|.++|.|+.|+|++. +|
T Consensus 163 lR~~~S~------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~l 235 (839)
T KOG0269|consen 163 LRSKKSK------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WL 235 (839)
T ss_pred eeccccc------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-ee
Confidence 9886543 445567789999999999999999999999999999998654 677789999999999999777 99
Q ss_pred EEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCCCCee
Q 015484 275 ATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
|+|+.|+.|+|||+..... ++.++. ...+|.++.|-|..++.|++++. |-.|+|||++. |..+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-------------PYIP 301 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-------------PYIP 301 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc-------------cccc
Confidence 9999999999999986443 333332 35789999999999998998874 88899999997 4455
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++..|...++.++|.....-++.+++.||.|..-.+.+.
T Consensus 302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 66778899999999998765558999999998765554443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=191.86 Aligned_cols=271 Identities=20% Similarity=0.314 Sum_probs=208.4
Q ss_pred CCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cC-CCCCc---eeeeCCCCCeeEEEe
Q 015484 102 VIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QD-DCDPD---LRLKGHDKEGYGLSW 174 (406)
Q Consensus 102 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~-~~~~~---~~~~~h~~~v~~l~~ 174 (406)
..+.|..+..+.-+..|.+++|+|.| .+.|+|+...+.+|.......... +. ...|. ..-+.|.+.|+|.+|
T Consensus 19 ~k~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred cccceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence 45778889999999999999999999 689999999999998665432210 01 11222 233568899999999
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCcee----------------------------------------------eee
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVI----------------------------------------------DAM 208 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------------------~~~ 208 (406)
+|.|+ +|++|++|.+|++.-++.......- +.+
T Consensus 98 s~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 99999 9999999999999876642211000 112
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc----c---cCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----A---HEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~---~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
+.+.+|.+-|.++- + -++.+|++|+.|.+|++||++-..++..+. . ..+.|.+++..|.|+ +|++|..|.
T Consensus 177 ~a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADS 253 (350)
T ss_pred eeecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCC
Confidence 33445555555442 1 146789999999999999999888776662 1 236799999999999 999999999
Q ss_pred cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...+||+|.+. +++.+..|...|.++.|+|... ++++++.|..|++-|+...-. ....+.....|...
T Consensus 254 sc~lydirg~r-~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla----------~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 254 SCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLA----------HELPIMVVAEHKDK 321 (350)
T ss_pred ceEEEEeeCCc-eeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchh----------hcCceEEEEeccCc
Confidence 99999999855 5999999999999999999885 699999999999999875111 01234445678899
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+..+.|+|..- -+++.+.|.++.+|-++
T Consensus 322 ~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 99999999876 57888999999999765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=218.72 Aligned_cols=220 Identities=24% Similarity=0.432 Sum_probs=192.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
+..+|..+-+.++|++.....|++++.|++|.+||+...... .....+...+.+|...|..++|++....+|++++.|+
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccC-CccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 466899888999999988788999999999999999876543 1346677889999999999999998887999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~ 268 (406)
.+.|||+++. . .++.....+|.+.|+|++|+|.+..+||+|+.|++|.+||+|..+ .+.++.+|...|.++.|+|
T Consensus 251 ~L~iwD~R~~-~---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 251 KLMIWDTRSN-T---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred eEEEEEcCCC-C---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 9999999973 2 123355678999999999999999999999999999999999865 4778899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCC-------------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTV-------------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+...+||+++.|+.+.|||+..... ++....+|...|..+.|+|..+.+|++.+.|+.+.||++..
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999999999975432 24566789999999999999999999999999999999873
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=227.19 Aligned_cols=257 Identities=21% Similarity=0.328 Sum_probs=212.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
+.++.++- +-+.+..|.|.+ .++++|...|.+.|||+... ..+-+.+.|.+.|++++.+|++. .+++||
T Consensus 405 kciRTi~~-~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~--------~l~Eti~AHdgaIWsi~~~pD~~-g~vT~s 473 (888)
T KOG0306|consen 405 KCIRTITC-GYILASKFVPGD-RYIVLGTKNGELQVFDLASA--------SLVETIRAHDGAIWSISLSPDNK-GFVTGS 473 (888)
T ss_pred ceeEEecc-ccEEEEEecCCC-ceEEEeccCCceEEEEeehh--------hhhhhhhccccceeeeeecCCCC-ceEEec
Confidence 33444433 366677777766 56777788888888887763 23555678999999999999999 899999
Q ss_pred CCCeEEEEeCCCccC-----Cceeeee--eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 187 HDNKICLWDVSALAQ-----DKVIDAM--HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~-----~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
.|.+|++||+.-... .+.+... .++ .-...|.|+.++| ++++++++--|.++++|-+.+.+...++.+|.-
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 999999999753211 1111111 111 2356799999999 799999999999999999999999889999999
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
||.|+..+|++. +++||+.|..|++|-+.-+.+ -+.+.+|...|.++.|.|.. +++.+++.|+.|+-||-.+
T Consensus 552 PV~smDIS~DSk-livTgSADKnVKiWGLdFGDC-HKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~k----- 623 (888)
T KOG0306|consen 552 PVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDC-HKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEK----- 623 (888)
T ss_pred ceeEEeccCCcC-eEEeccCCCceEEeccccchh-hhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhh-----
Confidence 999999999999 999999999999999987766 67888999999999999976 5799999999999999887
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|++++.+|+|. +++|++.|.+|++|.-.+.++
T Consensus 624 ---------Fe~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 624 ---------FEEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred ---------hhhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccCcce
Confidence 567778899999999999999999 689999999999999887643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=211.00 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=219.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+++..+.+-|..|+|++ .+|++|+.||.|.||+..+++.+..-.....-.+.-+..+|.|+.|+.+.. .|++|+.|
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD 284 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD 284 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence 4467788999999999999 689999999999999998876544333444445666889999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|.+.++.+.+.+. ..|...|+|+.|+. ++..+.+++.|.++++.-+++|++++.+.+|.+.|+...|.+
T Consensus 285 GkIKvWri~tG~ClRrFd-----rAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFD-----RAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred CcEEEEEEecchHHHHhh-----hhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence 999999999987643321 37999999999998 566677999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|. .+++++.||+|++|+..+.++ +.+++. ...+|+++..-|.++..++.|...++|.|-++..
T Consensus 359 dG~-~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------------ 424 (508)
T KOG0275|consen 359 DGH-HIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------------ 424 (508)
T ss_pred CCC-eEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------------
Confidence 999 899999999999999998765 666554 3457999999998877899999999999999875
Q ss_pred CCCeeEEEecC---CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 347 GPPELLFSHGG---HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 347 ~~~~~~~~~~~---h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+.+.++.. ..+...+...+|.|.| +.+.++|+.++.+.+.+|.++.
T Consensus 425 ---QvVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 425 ---QVVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ---eEEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceee
Confidence 45544432 2334667789999996 7788999999999999998754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=206.47 Aligned_cols=249 Identities=17% Similarity=0.266 Sum_probs=207.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
-...+|.+.|+......+. ...|+++.|-+-+|||.-++.+ ++.+ .|..-|.+++|+.+.. +|++|+.+
T Consensus 53 gtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgde--------lhsf-~hkhivk~~af~~ds~-~lltgg~e 121 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDE--------LHSF-EHKHIVKAVAFSQDSN-YLLTGGQE 121 (334)
T ss_pred EeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhh--------hhhh-hhhheeeeEEecccch-hhhccchH
Confidence 3456899999999998876 5688999999999999887433 4444 5888999999999887 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
..++|||++..+.. ...+.+|.+.|..+.|.. ..+.|++.+.|+.||+||.+++..++++. ...+|+++..++
T Consensus 122 kllrvfdln~p~Ap-----p~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~ 194 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAP-----PKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ 194 (334)
T ss_pred HHhhhhhccCCCCC-----chhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc
Confidence 99999999886532 355678999999999997 66777788999999999999999999886 578899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|+ + ++-...+.|.+||..+... ++.+.. ...|.+...+|+.. ++++|+.|+.++.||+.+..+.
T Consensus 195 dG~-i-lTia~gssV~Fwdaksf~~-lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi---------- 259 (334)
T KOG0278|consen 195 DGR-I-LTIAYGSSVKFWDAKSFGL-LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEI---------- 259 (334)
T ss_pred CCC-E-EEEecCceeEEeccccccc-eeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCcee----------
Confidence 998 4 4445567899999998664 555543 56799999999985 7999999999999999984321
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
-....+|-++|.+++|+|+|. +.++|++||+|+||+...+.-
T Consensus 260 ---~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 260 ---GSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ---eecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCc
Confidence 112478999999999999999 899999999999999877643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=202.36 Aligned_cols=257 Identities=21% Similarity=0.331 Sum_probs=205.1
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--CCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--FKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg 189 (406)
..|...|..+...--| ..|||++.|++|+||...+.. ...++.+|.+|.++|+.++|.. .|. +|++++.||
T Consensus 8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCc-EeeEeecCc
Confidence 3588888888777667 579999999999999998853 2466889999999999999975 566 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCc---ccccccccCCCeeEEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~i~ 265 (406)
.|.||.-..+. .........|...|++|+|.|.+ +-+|++++.||.|.+.+.+... ......+|...|++++
T Consensus 81 kVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 99999987763 23345567799999999999954 4567889999999999988652 1334478999999999
Q ss_pred ecCC---CC----------cEEEEEeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCC---CCEEEEEeCCCcEE
Q 015484 266 FNPY---NE----------WVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNH---ETVLASSADDRRLM 328 (406)
Q Consensus 266 ~~~~---~~----------~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~dg~i~ 328 (406)
|.|- |. ..|++|+.|..|+||+..+..-. -.++.+|...|..++|.|.- +..|+++++||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9986 31 25999999999999999875422 34488999999999999974 34699999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
||-.+...++.+ ..++. .....+..++||+.|. +|+.++.|+.|.+|.-+.
T Consensus 237 Iwt~~~e~e~wk--------~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 237 IWTKDEEYEPWK--------KTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEecCccCccc--------ccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 998874322221 12222 2456799999999999 788888999999998654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=220.66 Aligned_cols=267 Identities=17% Similarity=0.232 Sum_probs=204.2
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-----------------------------
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ----------------------------- 153 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------- 153 (406)
.|--..++.-.|+..|.++++.|.| ..|++|+.|-+|++||++.......
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 3455566666788999999999999 5799999999999999986543220
Q ss_pred --------------------C--CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee
Q 015484 154 --------------------D--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211 (406)
Q Consensus 154 --------------------~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 211 (406)
+ -..-....+||...++|.+|+|..++.++|++.||++++||++..+....+-.-...
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 0 011123346888999999999998889999999999999999987643222111111
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc---ccccCC--CeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR---VKAHEK--EVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~--~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.+..-+++.++|+| ++.+||+|+.||+|.+|+.+....-.. -.+|.. .|+||+|+++|+ +|++-+.|+++++|
T Consensus 314 ~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVW 391 (641)
T ss_pred CCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeee
Confidence 23345789999999 678899999999999999865433222 256766 999999999999 99999999999999
Q ss_pred eCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeC------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 287 DMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSAD------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
|+|+.+.++....+-. .+-+.++|+|+.+ +|++|.. .|.+.+||..+ ...++.+.-.
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t--------------~d~v~ki~i~ 456 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMT--------------LDTVYKIDIS 456 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccc--------------eeeEEEecCC
Confidence 9999998887665433 3567899999997 7888764 57799999876 3555555555
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...|..+.|+|.-+. |..|+.||.+++|=
T Consensus 457 ~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQ-IFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEEeecchhhh-eeeecCCCceEEEE
Confidence 778999999998774 55666789998873
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=218.09 Aligned_cols=242 Identities=19% Similarity=0.233 Sum_probs=207.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....|.++.|..|| .+||+|...|.|+|||..+. ..+..+.+|+.+|..+.|+|.+...|++|+.|+.++
T Consensus 66 rFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhccceeEEEeecCC-eEEEccCCcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 456789999999999 69999999999999996552 235678899999999999999887899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+||+.+... ...+.+|...|.|.+|+|.++.++++|+.||.|++||++.. ..+..+. |..+|.++.+-|.|.
T Consensus 137 ~~d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 137 YWDLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS 209 (487)
T ss_pred EEEcCCcEE------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC
Confidence 999988531 24667899999999999998999999999999999999987 4455554 899999999999988
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++++. ..|++||+-++.+.+..+..|...|+|+.+..++. -|++++-|+.|++||+.+ .+.
T Consensus 210 -~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~--------------~Kv 272 (487)
T KOG0310|consen 210 -LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTN--------------YKV 272 (487)
T ss_pred -EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccc--------------eEE
Confidence 8888775 47999999988876777777999999999999886 599999999999999766 455
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.... -.++|.+++.+|+++ .++.|..+|.+.+=+.
T Consensus 273 v~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 273 VHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEeee-cccceeeEEecCCCc-eEEEecccceeeeehh
Confidence 65554 467899999999998 6889999998877643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=224.20 Aligned_cols=240 Identities=13% Similarity=0.227 Sum_probs=178.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.+++|+|+.+.+||+|+.||+|+||++............+...+.+|...|.+++|+|++..+|++|+.|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 44558999999999999855799999999999999997632111011234567889999999999999987567899999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE----
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL---- 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i---- 264 (406)
++|++||++++... ..+. |...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|.+.+.+.
T Consensus 148 gtIrIWDl~tg~~~------~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 148 SFVNIWDIENEKRA------FQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred CeEEEEECCCCcEE------EEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 99999999886422 2222 457899999999 68899999999999999999999888888888765433
Q ss_pred -EecCCCCcEEEEEeCCC----cEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 265 -SFNPYNEWVLATASSDT----TVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 265 -~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.|++++. +|++++.|+ .|+|||+++...++..+..+. +.+.. .|.++...++++|+.|+.|++|++....
T Consensus 220 ~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~- 296 (568)
T PTZ00420 220 DGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGS- 296 (568)
T ss_pred eeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCc-
Confidence 3457777 777776664 799999998666676654332 33333 3444433578999999999999997521
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
...+..+ .+..++.+++|.|..
T Consensus 297 -----------~~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 -----------IRKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred -----------EEeeccc-ccCCCccceEEcccc
Confidence 1112222 256678889999874
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-27 Score=194.92 Aligned_cols=252 Identities=17% Similarity=0.266 Sum_probs=200.2
Q ss_pred eEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 106 VEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 106 ~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
++..+.+. -.+.|+++.|+++| .++++++.|.+++|||..++ +...++..+.-.+..++|..... .++.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~-~~i~ 73 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSN-TVIH 73 (311)
T ss_pred cccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCc-eEEE
Confidence 33444444 36899999999999 57888899999999999984 44677777777888889987666 6666
Q ss_pred ecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++. |.+|+..++.+.+ .++.+.+|...|++|+.+| .+..|++++.|++|++||+|..++...+.....+
T Consensus 74 sStk~d~tIryLsl~dNk------ylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNK------YLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred ccCCCCCceEEEEeecCc------eEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 666 8899999998864 3578899999999999999 4588889999999999999988887776544444
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCC---CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKM-TVPLHILSSH---TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h---~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++|+|.|- ++|++.....|++||+|.. +.|..++... ....+.|.|+|+|+. |+.+...+.+.+.|.-.+
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G--- 219 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDG--- 219 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCC---
Confidence 478999998 8888887779999999986 4566665544 568999999999986 666677889999998762
Q ss_pred cccccccCCCCeeEEEecCCCCC---eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAK---ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.++.++.++... -.+..|+|+++ ++.+|+.||.|++|+++++.
T Consensus 220 -----------~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 220 -----------TVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred -----------cEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc
Confidence 344444444322 26789999999 68899999999999998874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=196.32 Aligned_cols=279 Identities=18% Similarity=0.304 Sum_probs=210.2
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeE
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEV 140 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i 140 (406)
.++++||+. .. |+.+.+-++..... ....+.+.....+ .|.+.|++++.+. .++|+|+.|-+|
T Consensus 2 m~iIvGtYE-----~~--i~Gf~l~~~~~~~~------~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI 65 (362)
T KOG0294|consen 2 MEIIVGTYE-----HV--ILGFKLDPEPKGCT------DSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETI 65 (362)
T ss_pred eeEEEeeee-----eE--EEEEEeccCccccc------cccceeeeccccccccccceeEEEecc---eeEeccCCCCcE
Confidence 478899984 23 33555432221111 1123334333333 5899999999874 589999999999
Q ss_pred EEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCC-CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEE
Q 015484 141 YVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219 (406)
Q Consensus 141 ~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 219 (406)
+|||+... .....+..|.+.|+++.|.+.- .+.|++|+.||.|.+|+... +..+..+++|.+.|+
T Consensus 66 ~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 66 HIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVT 131 (362)
T ss_pred EEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccc
Confidence 99999984 3366778899999999998754 23799999999999999866 355688889999999
Q ss_pred EEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec
Q 015484 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS 299 (406)
Q Consensus 220 ~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (406)
.++.+| .+++.++.+.|+.+++||+-.|+.-.... -....+.+.|+|.|. .++.+..+ .|-+|.+.+... ...+.
T Consensus 132 ~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~A~v-~~~i~ 206 (362)
T KOG0294|consen 132 DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGD-HFVVSGRN-KIDIYQLDNASV-FREIE 206 (362)
T ss_pred eeEecC-CCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCC-EEEEEecc-EEEEEecccHhH-hhhhh
Confidence 999999 78999999999999999999887654443 223334599999999 67777765 599998886443 22222
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe--CCCCCcEEEE
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW--NKNDPWVISS 377 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~~l~s 377 (406)
....+.++.|-..+ .|++|+.|+.|++||... ..+.+.+.+|...|.++.+ .|.+. +|+|
T Consensus 207 -~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds--------------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvT 268 (362)
T KOG0294|consen 207 -NPKRILCATFLDGS--ELLVGGDNEWISLKDTDS--------------DTPLTEFLAHENRVKDIASYTNPEHE-YLVT 268 (362)
T ss_pred -ccccceeeeecCCc--eEEEecCCceEEEeccCC--------------CccceeeecchhheeeeEEEecCCce-EEEE
Confidence 23567788887655 488999999999999886 3566778899999999984 44555 7999
Q ss_pred EeCCCcEEEEeCCCcc
Q 015484 378 VADDNTVQVWQMTDSI 393 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~ 393 (406)
++.||.|+|||+....
T Consensus 269 aSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDMET 284 (362)
T ss_pred eccCceEEEEEccccc
Confidence 9999999999998774
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=232.40 Aligned_cols=262 Identities=21% Similarity=0.342 Sum_probs=213.8
Q ss_pred CCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCcccccc----CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQ----DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|.+|..+|++ ..+|||+ .||.++||+.+.-..... .-.+.+.....|.+.|.|+.|+|+|. +||+|+.|
T Consensus 13 ~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccCc
Confidence 3568999999999 5799999 899999999875331111 12345667778999999999999999 99999999
Q ss_pred CeEEEEeCCC------------ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 189 NKICLWDVSA------------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 189 g~i~iwd~~~------------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
+.|.+|.... ......+++...+.+|...|.+++|+| ++.++++++.|++|.+|+.++.+.+..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeec
Confidence 9999999873 112234567788899999999999999 899999999999999999999999999999
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC------C------------------------------------
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV------P------------------------------------ 294 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~------------------------------------ 294 (406)
|.+.|-.+.|+|-|+ +||+-+.|++|++|+..+... |
T Consensus 170 H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 999999999999999 999999999999999654210 0
Q ss_pred ---------cEEecCCCCCeEEEEEcCC--------C-------CC-EEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 295 ---------LHILSSHTEEVFQVEWDPN--------H-------ET-VLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 295 ---------~~~~~~h~~~v~~i~~~p~--------~-------~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
-..+-+|..++.++.|+|. | .+ ++|+|+.|++|.||..... .
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-------------R 315 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-------------R 315 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC-------------C
Confidence 2345689999999999983 1 11 7899999999999998651 1
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++..+.-....|.+++|+|+|. .|..++.||+|.+..++.+.+
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHHh
Confidence 22222333456799999999998 677889999999999988755
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=195.73 Aligned_cols=251 Identities=16% Similarity=0.292 Sum_probs=208.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|...|.+++|+.+| ..||+|+.|+++.+|++.... ........+|.+.|-.++|+|..+..|++++.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r------~~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDR------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchh------hhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 4455789999999999999 579999999999999998852 222455778999999999999888899999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|++||++.++.. .........+ -+.|+| ++.++++++.|..|.+.|.++.+.....+ ..-.++-++|+-
T Consensus 87 k~ir~wd~r~~k~~------~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCT------ARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNN 157 (313)
T ss_pred ceEEEEEeccCcEE------EEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecC
Confidence 99999999987542 3333333344 468999 68888899999999999999887766554 455678899996
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.+. +++.....|.|.|......+ |+..+++|.....||.|+|+|+ ++|+|+.|..+.+||+..
T Consensus 158 ~nd-~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~E-------------- 220 (313)
T KOG1407|consen 158 SND-LFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDE-------------- 220 (313)
T ss_pred CCC-EEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCc-eEeeccccceeeccChhH--------------
Confidence 666 66666667999999988755 5999999999999999999998 599999999999999986
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..++..+..+.-+|..++|+.+|+ +||++++|-.|-|=++.+|-
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD 264 (313)
T ss_pred hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC
Confidence 355666777889999999999999 69999999999888887763
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=239.14 Aligned_cols=268 Identities=21% Similarity=0.395 Sum_probs=224.1
Q ss_pred eEEEEEeecCCceeEEEEcCCCCc---EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPN---LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
++.+..+.-....++++|.+.+.. +||.|..||.|.+|+....... .....+.+...|++.|.++.|++...+.|
T Consensus 55 lk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 55 LKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCcee
Confidence 344445555677889999997755 6999999999999998873111 22344667888999999999999988899
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC--CC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE--KE 260 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 260 (406)
|+|+.||.|.|||+++.+...... -......|.+++|+....++|++++.+|.+.|||+|..+.+..+..+. ..
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 999999999999999865432221 122467899999998889999999999999999999988877664333 45
Q ss_pred eeEEEecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 261 VNYLSFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+..++|+|++...+++++.|. .|.+||+|....|++.+.+|...|.++.|++.+..+|++++.|+.|.+|+.++
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--- 285 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--- 285 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC---
Confidence 788999999887788887654 79999999999999999999999999999999988999999999999999987
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+.+..+......++++.|+|..+.++++++.||.|.|+.+.+..
T Consensus 286 -----------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 -----------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -----------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 466777777788999999999999889999999999999987764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=200.93 Aligned_cols=264 Identities=19% Similarity=0.342 Sum_probs=222.6
Q ss_pred CeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++.+.+.+ +|...|+.++.....+ ++.+++.|.+.+||.++. ..++..+.+|.+.|++|+|++.+. +++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es--------g~CL~~Y~GH~GSVNsikfh~s~~-L~l 206 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES--------GACLATYTGHTGSVNSIKFHNSGL-LLL 206 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc--------ccceeeecccccceeeEEeccccc-eEE
Confidence 45555544 6999999999887664 899999999999999998 455888999999999999999988 999
Q ss_pred EecCCCeEEEEe------CCCcc---------------------------C-CceeeeeeeeeccCccEEEEEeeCCCCC
Q 015484 184 SGSHDNKICLWD------VSALA---------------------------Q-DKVIDAMHVYEAHESVVEDVSWHLKNEN 229 (406)
Q Consensus 184 s~~~dg~i~iwd------~~~~~---------------------------~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 229 (406)
+++.|++..||. +.... . ...-.++..+.+|.+.|.+..|.. ++.
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccc
Confidence 999999999997 22100 0 011124566788999999999986 888
Q ss_pred EEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEE
Q 015484 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309 (406)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~ 309 (406)
.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+ ++++.+.|.+.++||+|..-..+..|.+|...|+++.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEE
Confidence 999999999999999999999999999999999999999988 9999999999999999976667889999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
|..+.+ +++|+.|.+|+|||++++.. .+.++. -.++++.++.+..++ +|+.--.+..|++||+
T Consensus 365 F~~dd~--vVSgSDDrTvKvWdLrNMRs-------------plATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 365 FNTDDR--VVSGSDDRTVKVWDLRNMRS-------------PLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDL 427 (481)
T ss_pred EecCCc--eeecCCCceEEEeeeccccC-------------cceeee-cCCccceeEeecCCc-eEEeccCCceEEEEec
Confidence 998875 89999999999999998553 233333 356789999998888 7877777788999999
Q ss_pred CCcccCCC
Q 015484 390 TDSIYRDD 397 (406)
Q Consensus 390 ~~~~~~~~ 397 (406)
+...+-..
T Consensus 428 nG~RlaRl 435 (481)
T KOG0300|consen 428 NGNRLARL 435 (481)
T ss_pred CCCccccC
Confidence 98866443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=223.76 Aligned_cols=245 Identities=26% Similarity=0.368 Sum_probs=210.1
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.++++.. +.+++++|+.|.+++|||+.+ ..+...+.+|.+.|.++...+ ..+++|+.|
T Consensus 243 ~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------g~C~~~l~gh~stv~~~~~~~---~~~~sgs~D 310 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------GECTHSLQGHTSSVRCLTIDP---FLLVSGSRD 310 (537)
T ss_pred eeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC--------CcEEEEecCCCceEEEEEccC---ceEeeccCC
Confidence 34779999999999987 447899999999999999887 455889999999999998753 378889999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.+|++|+++++.. +..+.+|..+|+++..+ +.++++|+.||+|++||+.+++++..+.+|...|.++.+.+
T Consensus 311 ~tVkVW~v~n~~~------l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 311 NTVKVWDVTNGAC------LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred ceEEEEeccCcce------EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence 9999999997643 46667799999999986 78899999999999999999999999999999999998876
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
. . .+++|+.|+.|++||+++....+..+.+|..-+..+.+.. + +|++++.|++|++||...
T Consensus 382 ~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~-------------- 442 (537)
T KOG0274|consen 382 E-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--N-FLVSSSADGTIKLWDAEE-------------- 442 (537)
T ss_pred c-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc--c-eeEeccccccEEEeeccc--------------
Confidence 5 4 8999999999999999997345899999999997777653 3 699999999999999987
Q ss_pred CeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 349 PELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 349 ~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.+++....+ |...|..+++. .. .+++++.||.+++||+.++....
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred CceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCchhh
Confidence 355566666 67889888887 23 67888899999999999987654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-29 Score=225.36 Aligned_cols=258 Identities=17% Similarity=0.366 Sum_probs=205.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
-.+..++|...++.. .++.++. ..+.||.+....... +....... -.-.+..|.|.....++|||++..|.
T Consensus 38 ~k~~~nAIs~nr~~~-qiv~AGr-s~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 38 LKAKANAISVNRDIN-QIVVAGR-SLLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred cccccceEeecCCcc-eeEEecc-cceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhheeecCCCc
Confidence 356778888888774 4555543 357888877643321 11111111 11345678998777779999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|.+||+......+ .+..|..|...++++.|++...++|++|+.||.|++||+|..+...++.+....|+.++|+|..
T Consensus 112 i~vWdlnk~~rnk---~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 112 ISVWDLNKSIRNK---LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred EEEEecCccccch---hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 9999998843322 2356788999999999999999999999999999999999999988888888999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
.+.|+++...|.+.+||+|....+...+.+|.++|.++.|+|++. +|||||.|++|+|||+..... .
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~------------~ 255 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRA------------K 255 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCc------------c
Confidence 889999999999999999999988999999999999999999775 799999999999999986221 2
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCCCccc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVA--DDNTVQVWQMTDSIY 394 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~~~~~ 394 (406)
.+.+.. ...+|..|.|-|..++.|++++ .|-.|+|||+....+
T Consensus 256 ~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 256 PKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred ceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 222222 2468999999999999898876 477899999987743
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=218.93 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=215.2
Q ss_pred ecCCcee---EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 113 RVDGEVN---RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~---~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
.|...|+ .+..++.+.++|.+|+.||.|++|+.......+. ......+..|...|..+....+++ .|+++|.|-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGK-TLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCc
Confidence 3445555 5566666667899999999999999988655332 123677889999999999998888 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--ccc--------c-cccC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQR--------V-KAHE 258 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~--------~-~~~~ 258 (406)
+|++|+..... .-++.++..|...|.|++.-..+..++|+||-|+.|.+||+.++.. +.+ + .++.
T Consensus 96 TVK~W~~~~~~----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 96 TVKVWNAHKDN----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred eEEEeecccCc----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 99999998764 1245677789999999999445889999999999999999997732 222 2 3778
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|++++.++.+. .+++|+..+.|++||.|+.+. +..+.+|+..|..+..+++|.. +++++.||+|++||+..
T Consensus 172 ~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq---- 244 (735)
T KOG0308|consen 172 DSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ---- 244 (735)
T ss_pred cceeeeecCCcce-EEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccc----
Confidence 8999999999997 999999999999999999776 7778899999999999999985 88999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..+++++..|...|+++..+|+-. .+++|+.||.|..=++.+
T Consensus 245 ----------QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 245 ----------QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ----------cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 577888899999999999999988 699999999999888877
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=193.92 Aligned_cols=246 Identities=15% Similarity=0.258 Sum_probs=193.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-.+.|.+++|+|....++++|+-||+||+|+++... ...+ .....|.++|.+++|+.+|. .+++|+.|+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----QLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKL 98 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC-----cccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCceEE
Confidence 346799999999766788899999999999999841 1222 45567999999999999997 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCC--EEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN--LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
||+.+++. ..+..|.++|..+.|-+ +.. .|++|+.|.+|++||+|...++.++. ....++++..- .+
T Consensus 99 wDL~S~Q~-------~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~p 167 (347)
T KOG0647|consen 99 WDLASGQV-------SQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YP 167 (347)
T ss_pred EEccCCCe-------eeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--Cc
Confidence 99999743 45567999999999986 444 88999999999999999988888876 34556666553 44
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+++++..++.|.+|+++++........ .-+-.+.+|+..++.+. .+.|+-+|.+.|..+..... .
T Consensus 168 -m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~------------~ 233 (347)
T KOG0647|consen 168 -MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP------------K 233 (347)
T ss_pred -eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCc------------c
Confidence 888999999999999987654332222 22346889999998875 68999999999999876321 2
Q ss_pred eEEEecCCC---------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 351 LLFSHGGHK---------AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 351 ~~~~~~~h~---------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-++++.|. ..|++++|+|... .|+++|.||.+.+||-...
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhh
Confidence 222333332 2588999999877 7999999999999997654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=215.77 Aligned_cols=227 Identities=23% Similarity=0.372 Sum_probs=185.2
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
+.++.+.+|+..|+++.|.|....+|++++.|+.|+||++.... .+++++.+|..+|.+++|+. .+..|.+++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNN-CGTSFLSASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccc-cCCeeeeeec
Confidence 34678899999999999999544499999999999999998732 35788999999999999997 6777889999
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|+.|++||+++|+++..+. ....++|+.|+|++.+.+++|+.|+.|+.||+|+++. ++.+..|-+.|..+.|-+++++
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCce
Confidence 9999999999999998886 4667899999999977999999999999999999775 8888999999999999999985
Q ss_pred EEEEEeCCCcEEEEeCCCCCccccccccc--------------------CCCCeeEEE------------ecCCC--CCe
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLELDAE--------------------DGPPELLFS------------HGGHK--AKI 362 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~------------~~~h~--~~v 362 (406)
++++++|+.++||+.+..-......... ......++. +.||. +.-
T Consensus 357 -FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 -FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred -EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 8999999999999987643221111000 000111111 23554 345
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+.|||+|+ +|++|+.||.+.+||..+-.
T Consensus 436 ~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 436 CQVDFSPDGR-TLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred eeEEEcCCCC-eEEeecCCccEEEeechhhh
Confidence 6789999999 69999999999999988753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=188.14 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=200.7
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..+...-+|..+|..++.+.++ ..+++|+.|..|.+||+.++ +....+.+|.+.|+.++|+.... .+++|
T Consensus 50 ~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~fNeesS-Vv~Sg 119 (307)
T KOG0316|consen 50 ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTG--------KVDRRFRGHLAQVNTVRFNEESS-VVASG 119 (307)
T ss_pred ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccC--------eeeeecccccceeeEEEecCcce-EEEec
Confidence 3445556799999999999988 56999999999999999984 45788999999999999999877 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.|.++++||.++. ..+|++.+......|.+|..+ ...+++|+.||+++.||+|.|+..... ...+|++++
T Consensus 120 sfD~s~r~wDCRS~----s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs 190 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSR----SFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVS 190 (307)
T ss_pred cccceeEEEEcccC----CCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEE
Confidence 99999999999884 345678888788899999986 678889999999999999998865544 357899999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF--QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~--~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|+++++ ..++++.|+++++.|-.+++. +...++|...-. .++++.... .+++|++||.|.+||+..
T Consensus 191 ~s~d~n-c~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd--------- 258 (307)
T KOG0316|consen 191 FSKDGN-CSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVD--------- 258 (307)
T ss_pred ecCCCC-EEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecc---------
Confidence 999999 888889999999999988765 888889887544 445665554 699999999999999986
Q ss_pred ccCCCCeeEEEecCCCCC-eeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 344 AEDGPPELLFSHGGHKAK-ISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+..+... |.+++++|.-.. +++++ ++.+.+|-
T Consensus 259 -----~~~~sk~~~~~~v~v~dl~~hp~~~~-f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 259 -----ETQISKLSVVSTVIVTDLSCHPTMDD-FITAT-GHGDLFWY 297 (307)
T ss_pred -----ceeeeeeccCCceeEEeeecccCccc-eeEec-CCceecee
Confidence 2444555556665 899999998874 44444 35566664
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=191.33 Aligned_cols=271 Identities=18% Similarity=0.295 Sum_probs=206.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg 189 (406)
-+|..-|.++.|.+.| +.+|+|+.|++|+|||..+.. +.+......+.|.+.|..|.|.+. |+ .+|+++.|+
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s----~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS----GTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDR 83 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC----CceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCC
Confidence 3688899999999999 579999999999999975533 346667778899999999999753 55 999999999
Q ss_pred eEEEEeCCCcc---CCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc------cccc-----
Q 015484 190 KICLWDVSALA---QDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT------QQRV----- 254 (406)
Q Consensus 190 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~------~~~~----- 254 (406)
++.||.=.... ..+......++....+.|++|+|.|.. +-.+|+++.||.+|||+...... ...+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999753211 112333445666678899999999853 55688999999999998754322 2222
Q ss_pred --cccCCCeeEEEecCCC--CcEEEEEeCC-----CcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCC---CEEE
Q 015484 255 --KAHEKEVNYLSFNPYN--EWVLATASSD-----TTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHE---TVLA 319 (406)
Q Consensus 255 --~~~~~~v~~i~~~~~~--~~~l~~~~~d-----g~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~---~~l~ 319 (406)
..+..+..|+.|+|.. +.+||+|+.+ +.+.||...... ..+..+..|+.+|+.|+|.|.-. ++||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 2466778899999742 2378888866 478999876544 23566779999999999999742 4799
Q ss_pred EEeCCCcEEEEeCCCCCcccccc------cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLEL------DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+++.|| |+||.+.......... ...+-+.+.+..+.+|++.|..++|+-.|. +|+|.|.||.||+|+.+
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhh
Confidence 999999 9999998533222111 111234566777899999999999999999 89999999999999865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=203.36 Aligned_cols=268 Identities=18% Similarity=0.252 Sum_probs=213.3
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---C------CCCCceee-eCCCCCeeEEEecCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ---D------DCDPDLRL-KGHDKEGYGLSWSPF 177 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~------~~~~~~~~-~~h~~~v~~l~~~~~ 177 (406)
....-.|.-.|.+++++|++ .+..+++.+|+|.=|++.++..... . ...+...- .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 34455799999999999998 5789999999999999987653310 0 11222222 389999999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
++ +|++|+.|..|.||+.++.+. ++.+.+|.+.|.+++|-. +...+++++.|+.+++|++.....+.++.+|
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~eh------v~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTLEH------VKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred Cc-EEEecCCCceEEEecCcccch------hhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 99 999999999999999988643 466789999999999996 6777889999999999999999999999999
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.+.|.+|.....++ .+.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. .+++|+.+|.|.+|++.+...
T Consensus 286 qd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 286 QDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred ccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 99999999887777 777788999999999954 3356778899999999998776 389999999999999987332
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
......++...+.+ ....+..+|++++..|... ++|+|+.+|.|++|.+.++
T Consensus 361 lf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 361 LFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 22111111110110 0011234899999999888 8999999999999999998
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=200.18 Aligned_cols=249 Identities=19% Similarity=0.308 Sum_probs=205.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
-.+.++...|.. ..+++|+.|.++.++|.... +.+..+.||...|+.+.++++.. .+++++.|-.|++|.
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWS 289 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchh-heeecCCcceEEeec
Confidence 467788888874 67999999999999999874 34778999999999999999888 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--cCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~ 273 (406)
....... .....|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|||+|- +
T Consensus 290 ~~~~s~~------~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-i 361 (506)
T KOG0289|consen 290 VPLSSEP------TSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-I 361 (506)
T ss_pred cccccCc------cccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-E
Confidence 8775432 34457999999999999 789999999999999999999988665532 345689999999998 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
|++|..||.|++||+.+... +..|.+|.++|..|+|+.+| |+|++++.|+.|++||++...... .+
T Consensus 362 fgtgt~d~~vkiwdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~k------------t~ 427 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFK------------TI 427 (506)
T ss_pred EeccCCCceEEEEEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccc------------ee
Confidence 99999999999999999775 88999999999999999999 579999999999999999843211 11
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
... ....|.++.|.+.|.| |+.+|.|=.|++++-.+..+....
T Consensus 428 ~l~-~~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 428 QLD-EKKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ecc-ccccceeEEEcCCCCe-EEeecceeEEEEEecccccceeee
Confidence 112 1236999999999995 666677777777775566665443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=221.45 Aligned_cols=239 Identities=25% Similarity=0.368 Sum_probs=207.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
|...+.+..|++ .++++++.+++|++|+..+.. .... +.+|.+.|.++++.. +..+|++|+.|.+++
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~--------~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGY--------LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTER 274 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccce--------EEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEE
Confidence 567888888882 469999999999999998842 2444 889999999999987 444999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||..++.+ ...+.+|...|.++... +..+++|+.|.+|++|++.++..+..+.+|..+|+++..+ +.
T Consensus 275 vWd~~sg~C------~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~- 342 (537)
T KOG0274|consen 275 VWDCSTGEC------THSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP- 342 (537)
T ss_pred eEecCCCcE------EEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-
Confidence 999988864 57778999999998865 5777889999999999999999999998899999999998 55
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC-ee
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP-EL 351 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~ 351 (406)
++++|+.|++|++||.+.++. ++.+.+|...|.++.+.+. . .+++|+.|+.|++||+++ . ++
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~--------------~~~c 405 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRT--------------KRKC 405 (537)
T ss_pred EEEEEecCceEEEEEhhhcee-eeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCc--------------hhhh
Confidence 899999999999999997665 9999999999999998876 3 599999999999999998 3 57
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+..+.+|...+.++.+..+ +|++++.|+.|++||..++....
T Consensus 406 ~~tl~~h~~~v~~l~~~~~---~Lvs~~aD~~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLLRDN---FLVSSSADGTIKLWDAEEGECLR 447 (537)
T ss_pred hhhhcCCcccccccccccc---eeEeccccccEEEeecccCceee
Confidence 7888899998877776644 79999999999999999886644
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=190.98 Aligned_cols=269 Identities=20% Similarity=0.319 Sum_probs=205.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC--CCC-----ceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDP-----DLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
-.|.+.|+.+...+....++++|+.||.|.|||+++........ .+. ...-.+|.-.|..+.|-|-+.+.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999777899999999999999998754221110 110 11224678889999999988889999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++.|.++++||.++.+.. ..|+ ..+.|.+-+|+|.. ..++|+|..+-.|++.|+.+|.....+.+|.+.|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a------~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEA------VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceee------EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 999999999999986543 2222 45678877888743 45788888999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------C-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTV-------------P-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
++.|+|..++.|++|+.||.|++||+|...- | ++.-.+|.+.|+.++|..++.+ +++++.|..++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r 271 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIR 271 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceE
Confidence 9999999999999999999999999986521 1 2234568889999999999985 88999999999
Q ss_pred EEeCCCCCccccccccc---------------------------------CCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 329 VWDLNRIGDEQLELDAE---------------------------------DGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
+|+..++.......... ......+..+..|...|.+..+.|+-+ -.
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq-~~ 350 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE-QC 350 (397)
T ss_pred EeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-hh
Confidence 99998765433221110 011223333456666677777777766 46
Q ss_pred EEEeCCCcEEEEeC
Q 015484 376 SSVADDNTVQVWQM 389 (406)
Q Consensus 376 ~s~~~dg~i~iw~~ 389 (406)
.+|..|+.|..|-+
T Consensus 351 ~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 351 FTGDMNGNIYMWSP 364 (397)
T ss_pred hccccCCccccccc
Confidence 67777888888876
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=197.16 Aligned_cols=248 Identities=20% Similarity=0.291 Sum_probs=204.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.-.|+.+.|+|+. ..+++++.|-.|+||...... .......|..+|+.+..+|.|. ||++++.||+
T Consensus 257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~ 326 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------EPTSSRPHEEPVTGLSLHPTGE-YLLSASNDGT 326 (506)
T ss_pred ccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------CccccccccccceeeeeccCCc-EEEEecCCce
Confidence 44799999999999988 679999999999999998732 3556778999999999999999 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..+.|++++..... ..-....-.+++.+||| ++.+|++|..||.|++||+..+..+..|.+|.++|..++|+.+|
T Consensus 327 w~Fsd~~~g~~lt~----vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 327 WAFSDISSGSQLTV----VSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred EEEEEccCCcEEEE----EeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 99999998753211 11112234689999999 79999999999999999999999999999999999999999988
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
- +|++++.|+.|++||+|..+. ..++.. ....|.++.|.+.|. +|+.++.|=.|++++-.+ ...
T Consensus 402 Y-~Lat~add~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~------------k~W 466 (506)
T KOG0289|consen 402 Y-WLATAADDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKT------------KSW 466 (506)
T ss_pred e-EEEEEecCCeEEEEEehhhcc-cceeeccccccceeEEEcCCCC-eEEeecceeEEEEEeccc------------ccc
Confidence 6 999999999999999998775 444433 234799999999997 477777776666666433 123
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+..+..|.+..+.+.|....+ ++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccce-EEeeccchhheEEeec
Confidence 55556667888899999999888 6999999999999865
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=182.89 Aligned_cols=243 Identities=20% Similarity=0.345 Sum_probs=199.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|-.++|+|..+.++++++.|.+|++||+... ++........+.+ -+.|+|+|. +++.++.|..
T Consensus 60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--------k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~ 129 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--------KCTARIETKGENI-NITWSPDGE-YIAVGNKDDR 129 (313)
T ss_pred ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--------cEEEEeeccCcce-EEEEcCCCC-EEEEecCccc
Confidence 45799999999999999899999999999999999873 4455554444444 678999999 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|...|.++.+... . ......++.++|+- .+++|+.....|.|.|......+++..+++|.....||.|+|+|
T Consensus 130 it~id~r~~~~~~------~-~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 130 ITFIDARTYKIVN------E-EQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred EEEEEecccceee------h-hcccceeeeeeecC-CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC
Confidence 9999998754321 1 12456788899994 67787777778999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+ +||+|+.|-.+.+||+...-+ ++.+..+.-+|..+.|+.+|+ +||++++|..|-|=++.++.
T Consensus 202 r-yfA~GsADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd-------------- 264 (313)
T KOG1407|consen 202 R-YFATGSADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD-------------- 264 (313)
T ss_pred c-eEeeccccceeeccChhHhhh-heeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC--------------
Confidence 9 999999999999999998665 778888999999999999997 79999999999988887733
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---------CcEEEEeCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADD---------NTVQVWQMT 390 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---------g~i~iw~~~ 390 (406)
.+... .+.++-..++|+|..+ +||-++.| |.|+|+-++
T Consensus 265 ~~~eI-~~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 265 RVWEI-PCEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEEEe-eccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 22332 2678899999999988 67666554 456666544
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=192.35 Aligned_cols=229 Identities=24% Similarity=0.464 Sum_probs=186.8
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce--e----ee---eeeeeccCccEEEEEeeCCCCCEEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV--I----DA---MHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~---~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
...|.+.|.++...+....++++|+.||.|.+||+++...... + .+ ...-.+|+-.|.++.|-|.+..+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3468899999999987666999999999999999987542110 1 11 1223468889999999999999999
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN--EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
+++-|.++++||+.+.+....++ ..+.|++-+++|-. ..++|+|..+-.|++.|+.++.. -+++.+|...|.++.|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEe
Confidence 99999999999999988777775 56778888888843 34788888899999999999776 8899999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+|..+++|++|+.||.|++||++.........+... ..+..+....+|.+.|..++|+.++.+ +++++.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeec
Confidence 999999999999999999999998743333222222 334444466789999999999999995 788899999999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
.+|.
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 8874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=196.68 Aligned_cols=254 Identities=17% Similarity=0.264 Sum_probs=199.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|..+|.-+.|+++| .+||+++.|.+..||.+..... .+..+++.+|..+|..+.|||+.+ +|++++.|..
T Consensus 220 l~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~ 292 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEV 292 (519)
T ss_pred HhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCC-eEEecCchHh
Confidence 34699999999999999 6899999999999999876432 455788999999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~~~~ 269 (406)
+.+||+.++.....++ .++...+.+++|.| ++..|++|+.|+.+..||+.. +......+ ....|.+++..++
T Consensus 293 ~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred eeeccCCcchhhhhcc-----cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCC
Confidence 9999999986532221 22457899999999 677788999999999999874 33444433 2356999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. .+++.+.|..|++|+...... .. +..-..+|++++.+.+++ ++++.-.+..+.+||+.. .
T Consensus 366 gk-~vl~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e--------------~ 427 (519)
T KOG0293|consen 366 GK-YVLLVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE--------------N 427 (519)
T ss_pred Cc-EEEEEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch--------------h
Confidence 99 666666899999999876433 22 223357899999999997 577777899999999985 3
Q ss_pred eeEEEecCCCCC--eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 350 ELLFSHGGHKAK--ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 350 ~~~~~~~~h~~~--v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
.++..+.||... |..-+|-.....+++||++|+.|+||+-.++.+..
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 455555666543 44445554443489999999999999998886543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=199.35 Aligned_cols=237 Identities=19% Similarity=0.278 Sum_probs=190.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-.+.|+++.|.+++. .+++++.|+.+++|++.. .....++.+|++.|+++.|..... .+++|+.|.+|+
T Consensus 217 Gs~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~--------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK 286 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDS--------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIK 286 (459)
T ss_pred ccCCCcceeeecCCCc-eEEeecCCCceeeeeccc--------hhhhhhhcccccceeeehhhcccc-ceeeccccchhh
Confidence 4458899999999995 566678899999999988 445788999999999999998666 699999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+||+.+..+.+.+- ..+.+++|+.+ ...+++|-.|+.|++||+++.........+. .|+++..++++.
T Consensus 287 ~WDl~k~~C~kt~l-------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~- 354 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVL-------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL- 354 (459)
T ss_pred hhhhhhhheecccc-------ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-
Confidence 99999865543321 24567777765 5667899999999999999999888887554 899999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
-+.+++.|.++.+.|+|+... ...+.+ -....+.+.|+|+++ ++++|+.||.|+||++.+.
T Consensus 355 ~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg------------- 419 (459)
T KOG0288|consen 355 ELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG------------- 419 (459)
T ss_pred EEeeecCCCceeeeecccccE-EEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc-------------
Confidence 677779999999999998653 334332 123489999999998 5999999999999999873
Q ss_pred CeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 349 PELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 349 ~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
++.+..... ...|++++|+|.|.+ +++++.++.+.+|.
T Consensus 420 -KlE~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 420 -KLEKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred -eEEEEeccCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 333333322 236999999999996 67888999999994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=192.76 Aligned_cols=244 Identities=16% Similarity=0.233 Sum_probs=207.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-|..+|.|+.|+.+. ..||+|+.||.|+||.+.++ .++..+. .|+..|+|+.|+.++. .+++++.|.
T Consensus 259 fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG--------~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~ 328 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETG--------QCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQ 328 (508)
T ss_pred eeecccceEEEeecccH-HHhhccCcCCcEEEEEEecc--------hHHHHhhhhhccCeeEEEEccCcc-hhhcccccc
Confidence 44688999999999998 68999999999999999984 3355555 8999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeEEEec
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~ 267 (406)
++++--+.+++. +..+.+|.+.|+...|.+ +++.+++++.||+|++|+.++.+++.+++ +...+|+++-.-
T Consensus 329 tvRiHGlKSGK~------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 329 TVRIHGLKSGKC------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred eEEEeccccchh------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999988754 466789999999999998 78888899999999999999999988884 345688999998
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|.++..++++...++|.+.++.. +.+..+.. ..+...++..+|.|+ ++.+.++|+.++.|.+.+
T Consensus 402 PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s---------- 468 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS---------- 468 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec----------
Confidence 98887899999999999998874 33555543 234567788999998 589999999999999887
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+-..+.-|...|..++-+|..+ ++|+-++||.+++|.+
T Consensus 469 ----G~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 469 ----GKLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWKP 508 (508)
T ss_pred ----CceeeeeecccccccccccCcccc-hhhhhcccchhhhcCC
Confidence 345556677888999999999888 8999999999999963
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=185.49 Aligned_cols=244 Identities=14% Similarity=0.221 Sum_probs=190.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-...|.++.|+|.+. .|++++.||.+++|+..... ....-.|..++.+++|.+.. .+++|+.||.|+.
T Consensus 12 P~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~---------l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS---------LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRR 79 (323)
T ss_pred ChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh---------hhhheecCCceeeeeccCCc--eEEEeccCceEEE
Confidence 357899999998885 56666799999999998742 22234588999999999743 6999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
+|++++.. ..+..|..+|.||..++ ....+++|+.|++|++||.|.......+.. ...|.++... +. .
T Consensus 80 ~Dln~~~~-------~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~-~ 147 (323)
T KOG1036|consen 80 YDLNTGNE-------DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN-R 147 (323)
T ss_pred EEecCCcc-------eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC-E
Confidence 99998754 34457999999999998 677888999999999999998666666643 3488888876 44 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
|++|+.+..+.+||+|+...+.+... .-+-.+.++++.|++.. ++.++-||.|.+=.+....+.+ ...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~----------skk 216 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ----------SKK 216 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHh----------hhc
Confidence 89999999999999999887653322 23457899999998776 7888999999887666532211 222
Q ss_pred EEecCCC---------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHK---------AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~---------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.++.|. -+|++++|+|-.. .|+|||.||.|.+||+.+..
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchh
Confidence 3333332 3699999999877 79999999999999998763
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=198.50 Aligned_cols=282 Identities=23% Similarity=0.303 Sum_probs=212.0
Q ss_pred hhhhcCCCCCC--ceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCC-CCCCCCCC-CCC-CC
Q 015484 29 DLIVSHPLEWP--SLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDS-ESNVGGKN-ENP-VI 103 (406)
Q Consensus 29 ~~~~~~~~~~p--~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~-~~~~~~~~-~~~-~~ 103 (406)
+++.+|.+-.| .||++|+-..... .-....+.+||.. -.|.||.+.+-+.-. .+..|... -.. ..
T Consensus 163 nlYvHHD~ilpafPLC~ewld~~~~~-----~~~gNyvAiGtmd-----p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~ 232 (463)
T KOG0270|consen 163 NLYVHHDFILPAFPLCIEWLDHGSKS-----GGAGNYVAIGTMD-----PEIEIWDLDIVDAVLPCVTLGSKASKKKKKK 232 (463)
T ss_pred ceeEecceeccCcchhhhhhhcCCCC-----CCCcceEEEeccC-----ceeEEeccccccccccceeechhhhhhhhhh
Confidence 45566665444 5799999873322 2234688999985 367888777431100 12222111 000 00
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++ +-...-+|+..|..++|+..-+++||+|+.|.+|.+||+.+ .+|..++..|.+.|.+++|+|.....|+
T Consensus 233 ~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~--------g~p~~s~~~~~k~Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 233 GK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT--------GKPKSSITHHGKKVQTLEWHPYEPSVLL 303 (463)
T ss_pred cc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------CCcceehhhcCCceeEEEecCCCceEEE
Confidence 01 11122369999999999998889999999999999999998 5667888899999999999999888999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCee
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVN 262 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~ 262 (406)
+|+.|++|.+.|.+...... ..+ ...+.|..++|+|.....|++++.||.|+-+|+|.. +++.++++|...|.
T Consensus 304 sGs~D~~V~l~D~R~~~~s~-----~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNSG-----KEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred eccccceEEeeeccCccccC-----ceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 99999999999998532211 111 235789999999999999999999999999999986 78899999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++++++..++++++++.|+.+++|++...... +......-+...|+++.|+-..+++.|+..+.++|||+.+.
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 99999999999999999999999998754321 11111112347788999998888999999999999999763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=191.00 Aligned_cols=263 Identities=22% Similarity=0.359 Sum_probs=214.9
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC------CCccc------cc--------c------------CC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC------AKQAE------KQ--------Q------------DD 155 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~------~~~~~------~~--------~------------~~ 155 (406)
+.+..+|.+.|++|+|++.+ .++++++.|++..||.. ..... .. . .-
T Consensus 183 L~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred eeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 45567899999999999988 79999999999999982 21000 00 0 01
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
..|+..+.+|...|.+..|...|. .+++++.|.+..+||++++.. +..+.+|....+.++-+| ..+++++.+
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtge~------v~~LtGHd~ELtHcstHp-tQrLVvTsS 333 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETGEV------VNILTGHDSELTHCSTHP-TQRLVVTSS 333 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccCce------eccccCcchhccccccCC-cceEEEEec
Confidence 235678899999999999999887 999999999999999999753 466789999999999999 789999999
Q ss_pred cCCcEEEEECCCC-cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 236 DDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 236 ~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ +++|+.|.+|++||++++..|+.++.. .++++.++.+..+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~ 410 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH 410 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC
Confidence 9999999999843 33667899999999999998775 999999999999999999999988875 6789999999887
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEeCCCcEEEEeCCCcc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+ +|+.-..+..|++||++..... .-+-...++|...|++++|..+.+ .-|.++|.|..+.=|++....
T Consensus 411 ~-iIAiPhDNRqvRlfDlnG~Rla----------RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 411 P-IIAIPHDNRQVRLFDLNGNRLA----------RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred c-eEEeccCCceEEEEecCCCccc----------cCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 6 7888888899999999863221 112234578999999999986644 136788999999999987643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=194.06 Aligned_cols=224 Identities=21% Similarity=0.379 Sum_probs=185.4
Q ss_pred eeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCcc----------CCceeeeeeeeeccCccEEEEEeeCCCCCE
Q 015484 162 LKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALA----------QDKVIDAMHVYEAHESVVEDVSWHLKNENL 230 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~ 230 (406)
...|.+.+..+.-++.++ .+.++=+..|.|.||++...- .....+++.++.+|...-..++|+|.....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 446788888888877653 256666788999999986421 123456778899999999999999977777
Q ss_pred EEEEecCCcEEEEECCCCcc---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeE
Q 015484 231 FGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVF 306 (406)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~ 306 (406)
+++|..-+.|++|...++.- ...+.+|+..|-.++|+|....+|++|+.||+|+|||+|... .+....++|.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 88999999999999988654 244567999999999999998899999999999999999873 34445589999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.|.|+...+ +||+|+.||+++|||++.... ..++..+.-|..+|+++.|+|.....|+++|.|..|.|
T Consensus 307 VISWnr~~~-lLasG~DdGt~~iwDLR~~~~-----------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 307 VISWNRREP-LLASGGDDGTLSIWDLRQFKS-----------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eEEccCCcc-eeeecCCCceEEEEEhhhccC-----------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 999999987 899999999999999998432 35677778899999999999987778999999999999
Q ss_pred EeCCCcccCCC
Q 015484 387 WQMTDSIYRDD 397 (406)
Q Consensus 387 w~~~~~~~~~~ 397 (406)
||+.-..-.++
T Consensus 375 WDlsvE~D~ee 385 (440)
T KOG0302|consen 375 WDLSVEADEEE 385 (440)
T ss_pred EEeeccCChhh
Confidence 99987765433
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=204.14 Aligned_cols=239 Identities=19% Similarity=0.249 Sum_probs=200.3
Q ss_pred EeecCCceeE-EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNR-ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~-i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+|.+-|.+ ++|.+..+-.+++|+.|+.|.+|.... ..|...+.+|...|.+++...++ .+++||.|.
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--------~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~ 122 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--------AEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDS 122 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCC--------CCchhhhhccccceeeeecCCcC--ceEeccccc
Confidence 4457777777 888874434699999999999999987 67789999999999999877655 499999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++|..... ...+.+|...|++++.-| .+ .+++|+.|.+|++|.- ++.++++.+|...|+.+++-++
T Consensus 123 TakvW~~~~l--------~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 123 TAKVWRIGEL--------VYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ceEEecchhh--------hcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 9999987653 244789999999999988 33 7789999999999975 7888999999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. |++++.||.|++|++. +.. +..+.+|+.-|.++...+.++ +++++++|++++||+..
T Consensus 191 ~~--flScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---------------- 249 (745)
T KOG0301|consen 191 SH--FLSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---------------- 249 (745)
T ss_pred CC--eEeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC----------------
Confidence 76 8999999999999994 344 889999999999999776665 79999999999999976
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++...+.-....|+++.+-++|. +++|+.||.|+||.......
T Consensus 250 e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEeccccc
Confidence 33444443455799999999998 77888999999998875543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=187.72 Aligned_cols=217 Identities=20% Similarity=0.351 Sum_probs=174.8
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc------------cCCceeeeeeeeeccCccEEEEEeeCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL------------AQDKVIDAMHVYEAHESVVEDVSWHLK 226 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~i~~i~~~p~ 226 (406)
...+..|.+++.+.+|+++|. ++++|+.|..|+|+|++.. ......+.++++-.|..+|+++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 456788999999999999999 9999999999999998831 11122245677778999999999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE--EecCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH--ILSSHT 302 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~h~ 302 (406)
...+|++++.|++|++||.......+.++ ....+|.+++|+|.|+ +|++|..-..+++||+.+.+.-+. .-..|+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 68999999999999999987544333332 2457899999999999 899999889999999998654222 234689
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCC-CCCeeeEEeCCCCCcEEEEEeC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGH-KAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
+.|+++.+++.++ +.++++.||.|+|||--+.. ++.++ .+| ...|.+..|..+++| +.+.|.
T Consensus 262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~ 325 (430)
T KOG0640|consen 262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGK 325 (430)
T ss_pred cceeEEEecCCcc-EEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccCCeE-EeecCC
Confidence 9999999999997 89999999999999976632 22222 233 346999999999996 667889
Q ss_pred CCcEEEEeCCCccc
Q 015484 381 DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 dg~i~iw~~~~~~~ 394 (406)
|..+++|.+.++..
T Consensus 326 DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 326 DSTVKLWEISTGRM 339 (430)
T ss_pred cceeeeeeecCCce
Confidence 99999999998754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=199.82 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=203.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-.|.+.|..+.|.++. ..|++|+.|..|++|+..... .....++.+..+.|+++.|.+++. .+++++.|+.
T Consensus 171 ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~ 242 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNK-HVIAASNDKN 242 (459)
T ss_pred hhccccccceeEEccCc-chhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCc-eEEeecCCCc
Confidence 33589999999999986 579999999999999998743 344677888889999999999998 8889999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
+++|++...+. +.++.+|...|+++.|.. +...+++|+.|.+|++||+....+.+++. ..+.++.|..++
T Consensus 243 ~r~Wnvd~~r~------~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 243 LRLWNVDSLRL------RHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI-- 312 (459)
T ss_pred eeeeeccchhh------hhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEecc--
Confidence 99999988643 467788999999999986 44448899999999999999887776664 345566676662
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
. .+++|..|+.|++||.|.... ......+ +.|+++..++++.. +.+++.|.++.+.|+++.+-.... .
T Consensus 313 ~-~~~SgH~DkkvRfwD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~--------s 380 (459)
T KOG0288|consen 313 S-DVISGHFDKKVRFWDIRSADK-TRSVPLG-GRVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTF--------S 380 (459)
T ss_pred e-eeeecccccceEEEeccCCce-eeEeecC-cceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEe--------e
Confidence 3 789999999999999998665 6666665 49999999999986 677799999999999983321110 0
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
......+| ..+.+.|||++.| +++|+.||.|+||++.++.++.
T Consensus 381 A~g~k~as--DwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 381 AEGFKCAS--DWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred cccccccc--ccceeEECCCCce-eeeccCCCcEEEEEccCceEEE
Confidence 00111222 3889999999995 8999999999999999997754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=200.95 Aligned_cols=303 Identities=13% Similarity=0.198 Sum_probs=231.5
Q ss_pred hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCC
Q 015484 26 FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPK 105 (406)
Q Consensus 26 ~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (406)
..+..+-+..+..-.-+++|.|..... ..+++ . ..|.+...++... .+.. ++ ..+
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~---------~~lv~-l-----~nNtv~~ysl~~s-~~~~----p~-----~~~ 363 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTE---------NTLVL-L-----ANNTVEWYSLENS-GKTS----PE-----ADR 363 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcc---------eeEEE-e-----ecCceEEEEeccC-CCCC----cc-----ccc
Confidence 355566666666667799999965433 23333 1 1255555566631 1110 00 123
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.......+|...|..++++.+. .++++| ..+.|.||+..+ .+++.++.. ..+.+..|.|.+. ++++|
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t--------~kciRTi~~--~y~l~~~Fvpgd~-~Iv~G 430 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDT--------LKCIRTITC--GYILASKFVPGDR-YIVLG 430 (888)
T ss_pred cceeeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccC--------cceeEEecc--ccEEEEEecCCCc-eEEEe
Confidence 3445567899999999999987 456655 456799999987 344555543 4788999999777 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-----cccccc------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-----QTQQRV------ 254 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~------ 254 (406)
...|.+.+||+.+... +.....|.+.|++++.+| ++..+++|+.|.+|++||..-. ...+.+
T Consensus 431 ~k~Gel~vfdlaS~~l------~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 431 TKNGELQVFDLASASL------VETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ccCCceEEEEeehhhh------hhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 9999999999987643 244568999999999999 6788889999999999997521 111111
Q ss_pred -cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 255 -KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 255 -~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
-.-...|.|++++|++. +||++--|.+++||-+.+.+- ...+.+|.-+|.++..+|++. +++|||.|..|+||-+.
T Consensus 504 tLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccc
Confidence 12357899999999999 999999999999999998776 667899999999999999997 89999999999999988
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
- ..+..++.+|...|.++.|.|... ++.++|.|+.|+-||-..
T Consensus 581 F--------------GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 581 F--------------GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred c--------------chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh
Confidence 7 345556678999999999999776 788999999999997543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=201.74 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=202.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-EEecCCCCCeEEEecCCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-LSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg 189 (406)
..+|...|..+++.+.. .+++++.||++++|+-... +......+.+|.+-|.. +++-+..+..|++|+.|+
T Consensus 10 l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred eccCccchheeEecCCe--EEeecCCCCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccc
Confidence 44799999999987755 6899999999999998763 45556778888887776 888765555799999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|.+|.+... .++..+.+|...|.++.... .+. +++|+.|.++++|-. +++...+.+|+..|.+++.-|.
T Consensus 82 ~i~v~~~~~~------~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 82 TIIVFKLSQA------EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred eEEEEecCCC------CchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCC
Confidence 9999998765 35678899999999998664 344 789999999999975 5566678999999999999987
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+ .++||+.|.+|++|.-. ..+.++.+|...|..+++-+++. +++++.||.|++|++..
T Consensus 152 ~--~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g--------------- 209 (745)
T KOG0301|consen 152 N--TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG--------------- 209 (745)
T ss_pred C--cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC---------------
Confidence 7 59999999999999763 34889999999999999999874 88999999999999964
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.+..+.||++.|.+++..+++. +++|+|+|++++||+..
T Consensus 210 e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 77888899999999999777766 79999999999999976
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=191.70 Aligned_cols=262 Identities=20% Similarity=0.298 Sum_probs=202.5
Q ss_pred ecCCceeEEEEcCCCC-cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKP-NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
-|.+.|++++|+|..+ .++|+|...|+|-+||+..... ...-+..+..|..+|.++.|+|.+...+++.|.||+|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4789999999999765 7999999999999999963222 2333667788999999999999988899999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~ 270 (406)
++-|++...... +.........+.++.|+.. ...++.+..=|.+.+||+|++.. ...+..|...|++++++|..
T Consensus 260 R~~D~~~~i~e~----v~s~~~d~~~fs~~d~~~e-~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEE----VLSLDTDNIWFSSLDFSAE-SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHH----HhhcCccceeeeeccccCC-CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999998854322 1222223456777888874 44455666667999999999776 55667788899999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++||+++.|++++|||+|.... |+.....|...|.++.|+|.+.. |+|.+.|..|+|||..-.... +.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~-------~~ 406 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK-------DE 406 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc-------CC
Confidence 99999999999999999997542 44566789999999999999987 899999999999998521111 11
Q ss_pred CCeeEEEecC-CC--CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 348 PPELLFSHGG-HK--AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 348 ~~~~~~~~~~-h~--~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+ .....+.. +. -......|.|+.. ++++|..-..|-|++-+.+.
T Consensus 407 p-~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 407 P-LGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred c-cceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE
Confidence 1 11112211 11 1355678999888 78999888889999998886
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=189.47 Aligned_cols=247 Identities=16% Similarity=0.264 Sum_probs=198.6
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|...+.+++.+|++ .+||+|+.|..|.||+.++ ..++..+.+|.+.|.+++|-... +.|++++.|++|+
T Consensus 200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t--------~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvk 269 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT--------LEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVK 269 (479)
T ss_pred cccceeEEEEEcCCC-cEEEecCCCceEEEecCcc--------cchhhcccccccceeeeeeecCc-cceeeeecCCceE
Confidence 899999999999999 6899999999999999998 56678899999999999998744 4899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|+++.... +.++.+|...|.+|.-.. -.+.+.+|+.|+++++|++. .+....+.++.+.+-|++|-.+.
T Consensus 270 vw~~~~~s~------vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-- 339 (479)
T KOG0299|consen 270 VWSIDQLSY------VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-- 339 (479)
T ss_pred EEehhHhHH------HHHHhCCccceeeechhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc--
Confidence 999987432 355678999999998764 46666667799999999994 33344557788899999998655
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEe-cCC-----------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHIL-SSH-----------TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h-----------~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+++|+.+|.|.+|++.+.+. +.+. .+| ...|++++..|..+ ++++|+.+|.|++|-+...-.
T Consensus 340 HfvsGSdnG~IaLWs~~KKkp-lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r--- 414 (479)
T KOG0299|consen 340 HFVSGSDNGSIALWSLLKKKP-LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR--- 414 (479)
T ss_pred ceeeccCCceEEEeeecccCc-eeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc---
Confidence 599999999999999987543 4332 222 23789999999886 899999999999999986322
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+..+++.+. -.+.|++++|+++|+++++..+..-.+-=|-....
T Consensus 415 -------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 415 -------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred -------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 234555554 56789999999999988888787777766655433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-27 Score=212.53 Aligned_cols=236 Identities=22% Similarity=0.357 Sum_probs=206.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|...|.++..-..+ ..+++|+.|-.+-+|.+.. ..+...+.+|..+|.++.|++... +|++|+.+|+
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k--------p~~i~S~~~hespIeSl~f~~~E~-Llaagsasgt 93 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK--------PNAITSLTGHESPIESLTFDTSER-LLAAGSASGT 93 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC--------CchhheeeccCCcceeeecCcchh-hhcccccCCc
Confidence 44688999999885445 6899999999999999987 344667899999999999999887 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||++..+. ++++.+|...+.++.|+| -+.+++.|+.|+.+.+||++...+...+.+|...|.++.|+|+|
T Consensus 94 iK~wDleeAk~------vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 94 IKVWDLEEAKI------VRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred eeeeehhhhhh------hhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 99999997643 356778999999999999 68888999999999999999989999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
. +++.|+.|..++|||++.++. +..|..|.+.+..+.|+|.. .++++|+.|+++++||+++ .+
T Consensus 167 r-~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet--------------fe 229 (825)
T KOG0267|consen 167 R-WVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET--------------FE 229 (825)
T ss_pred c-eeeccCCcceeeeeccccccc-ccccccccccccccccCchh-hhhccCCCCceeeeeccce--------------eE
Confidence 9 999999999999999998765 78899999999999999987 5899999999999999986 35
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
++-........|.+++|+|++. .+.+|..+
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred EeeccCCccCCceeeeecCCce-eeecCchh
Confidence 5555556677899999999998 57776544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=207.20 Aligned_cols=218 Identities=17% Similarity=0.297 Sum_probs=169.8
Q ss_pred ee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc----------------------------cC----Cc-----
Q 015484 162 LK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL----------------------------AQ----DK----- 203 (406)
Q Consensus 162 ~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------------~~----~~----- 203 (406)
+. .|.+.|+++.|+++|+ +||+|+.||.|+||.+... .. ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44 7999999999999999 9999999999999987650 00 00
Q ss_pred -----------------eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 204 -----------------VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 204 -----------------~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.-+++..+.+|.+.|.+|.|+. +++|++++.|.+|++|++...+++..|. |...|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 0034466789999999999995 7888899999999999999999999986 9999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|...++|++|+-||.|+||++...+. +.... -..-|++++|.|+|+ ..+.|+.+|.+++|+.....-.. ......
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~V-v~W~D-l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~-~~~I~~ 493 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKV-VDWND-LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVS-DFHIRL 493 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCee-Eeehh-hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEE-eeeEee
Confidence 998888999999999999999987443 33333 348899999999998 58899999999999987622111 000000
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+ . ..|. .|+.+.|.|..+.-++..+.|..|||+|..+.
T Consensus 494 ~~~K---k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 494 HNKK---K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred ccCc---c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 0000 0 1123 79999999876654556678999999999544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=193.30 Aligned_cols=259 Identities=15% Similarity=0.253 Sum_probs=204.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+--+++|.+++-+|.| .+|+.|+..|.|++|.+.++ ..+..+.+|=..|+|+.|+.+|. +|+|||.|
T Consensus 75 ~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG--------~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskD 144 (476)
T KOG0646|consen 75 VQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSG--------ILLNVLSAHYQSITCLKFSDDGS-HIITGSKD 144 (476)
T ss_pred hhhcccccceeeeecCCCc-eEEEeecccCcEEEEEeccc--------cHHHHHHhhccceeEEEEeCCCc-EEEecCCC
Confidence 3566678999999999999 78888889999999999984 33666789999999999999999 99999999
Q ss_pred CeEEEEeCCCc---cCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 189 NKICLWDVSAL---AQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|.|.+|.+... .......++..+..|.-+|+++...+. ....+++++.|.++++||+..+..+.++. ....+.++
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av 223 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAV 223 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeE
Confidence 99999987542 111245677889999999999998763 35678899999999999999998887775 56789999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCC---------------CCcEEecCCCC--CeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMT---------------VPLHILSSHTE--EVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~h~~--~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+.+|-+. .+.+|+.+|.|.+.++.... ..+..+.+|.+ .|+|++.+-+|. +|++|+.||.|
T Consensus 224 ~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~V 301 (476)
T KOG0646|consen 224 ALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKV 301 (476)
T ss_pred EEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCE
Confidence 9999888 89999999999998876533 12456778888 999999999996 89999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+|||+.+ .+++.+.....++|+.+.+.|-.+-.+..-.....+-.|++...+.
T Consensus 302 cvWdi~S--------------~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 302 CVWDIYS--------------KQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIP 354 (476)
T ss_pred EEEecch--------------HHHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCC
Confidence 9999987 3444444434667888888665443333333344455555544433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=179.48 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=175.0
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe-eCCCCCEEEEEecCCcE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-HLKNENLFGSAGDDCQL 240 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i 240 (406)
-..|.+.|..+...-.|. +|+|++.|++|+|+.++.... ...+..+.+|.++|..++| +|.-+.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 346888888887777788 999999999999999988654 2356788999999999999 56678999999999999
Q ss_pred EEEECCCCcc--cccccccCCCeeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCC--
Q 015484 241 MIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNE-WVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPN-- 313 (406)
Q Consensus 241 ~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~-- 313 (406)
.||.-.+++- ......|...|++++|.|.+- .+|++++.||.|.|.+.+... ..-.....|.-.|++++|.|-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999888754 334477999999999999642 379999999999999988652 224456789999999999996
Q ss_pred -CC----------CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC---CcEEEEEe
Q 015484 314 -HE----------TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND---PWVISSVA 379 (406)
Q Consensus 314 -~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~~l~s~~ 379 (406)
|. +-|++|+.|..|+||+..... ..+-..+.+|.+.|.+++|.|.- +..|||++
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcc------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 31 239999999999999998731 23334478999999999999964 34799999
Q ss_pred CCCcEEEEeCC
Q 015484 380 DDNTVQVWQMT 390 (406)
Q Consensus 380 ~dg~i~iw~~~ 390 (406)
.||.|.||...
T Consensus 231 qDg~viIwt~~ 241 (299)
T KOG1332|consen 231 QDGTVIIWTKD 241 (299)
T ss_pred CCCcEEEEEec
Confidence 99999999887
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=173.11 Aligned_cols=243 Identities=18% Similarity=0.234 Sum_probs=187.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.++..|..++|..... .++.++. |.+|+..++.+ .+.+.-+.||...|.+|+.+|-+. .+++++.|++
T Consensus 54 skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~d--------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~t 123 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHD--------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKT 123 (311)
T ss_pred cccccccEEEEecCCc-eEEEccCCCCCceEEEEeec--------CceEEEcCCCCceEEEEEecCCCC-eEEecccCCe
Confidence 4557788889887663 4444555 77899999988 355888999999999999999887 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccc---cccCCCeeEEE
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRV---KAHEKEVNYLS 265 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~---~~~~~~v~~i~ 265 (406)
|++||++..++...+ . ...-..++|.| .+-+||++.....|++||+|.- .+..++ .......+.|.
T Consensus 124 vrLWDlR~~~cqg~l------~--~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~ 194 (311)
T KOG1446|consen 124 VRLWDLRVKKCQGLL------N--LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE 194 (311)
T ss_pred EEeeEecCCCCceEE------e--cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE
Confidence 999999976543222 1 22334568999 6888888888779999999974 233333 23467789999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCe---EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEV---FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v---~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
|+|+|+ +++.++..+.+++.|.-.+.. +..+..+...- ...+|.|+++ ++++|+.||+|.+|++++
T Consensus 195 FS~dGK-~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~t-------- 263 (311)
T KOG1446|consen 195 FSPDGK-SILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLET-------- 263 (311)
T ss_pred EcCCCC-EEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCC--------
Confidence 999999 777777888999999888764 66666655432 6789999997 699999999999999977
Q ss_pred cccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+....+ +..++.++.|+|... +++|+ +..+.+|-+....+
T Consensus 264 ------g~~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 264 ------GKKVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred ------CcEeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence 234444455 688899999999876 56665 56899997765443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=178.92 Aligned_cols=273 Identities=16% Similarity=0.235 Sum_probs=195.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
......+|.+.|++++|+.+| ..||+++.|+.|+||++.+-........+.. -.-+..+.+.|.|+-+..+++.-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n----ve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQN----VEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhcc----ccCCCceEEEECCCcceEEEEEc
Confidence 344456899999999999999 5899999999999999987433221111111 11134578999999887888888
Q ss_pred CCCeEEEEeCCCccCCce-e-----eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 187 HDNKICLWDVSALAQDKV-I-----DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~-~-----~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
...++++|.+........ + .....-..|...+.++-... +..++++++.|..|.+|+++ |+.+..+......
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 888999998866433211 1 11112234566666666653 78899999999999999999 8888888777777
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT-------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
-+..+.+|+|+ ++++++-.-.|++|.+--.+ ..+..+++|+..|..++|+|+... ++|.+.||+++|||+.
T Consensus 231 n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeecc
Confidence 88889999999 88888888899999863221 236678999999999999999975 9999999999999986
Q ss_pred CCCcc---ccccc--------ccCCCCeeEEE----------------------------ecCCCCCeeeEEeCCCCCcE
Q 015484 334 RIGDE---QLELD--------AEDGPPELLFS----------------------------HGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 334 ~~~~~---~~~~~--------~~~~~~~~~~~----------------------------~~~h~~~v~~~~~s~~~~~~ 374 (406)
-..+. ...+. ....|.++... -..|...|.+++|+++|+ .
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~ 387 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-Y 387 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-E
Confidence 52211 00000 00001111000 024778899999999999 4
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
++++| |..+++..-.
T Consensus 388 ~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 388 IATCG-DRYVRVIRNT 402 (420)
T ss_pred Eeeec-ceeeeeecCC
Confidence 77877 7888888633
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=195.78 Aligned_cols=236 Identities=21% Similarity=0.383 Sum_probs=190.4
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
+-+.|+..+ .||+|.. ..|++|+...... ......+...|+++.|+++|. +|++|..+|.|.|||..+
T Consensus 181 nlldWss~n--~laValg-~~vylW~~~s~~v--------~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALG-QSVYLWSASSGSV--------TELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hHhhcccCC--eEEEEec-ceEEEEecCCCce--------EEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhh
Confidence 346677544 6777754 4599999988421 222223378999999999999 999999999999999987
Q ss_pred ccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEE
Q 015484 199 LAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.+.. ..+.. |...|.+++|+ ...+.+|+.+|.|..+|++..+.... +.+|...|..++|++++. +||+
T Consensus 249 ~k~~------~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lAS 318 (484)
T KOG0305|consen 249 QKKT------RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLAS 318 (484)
T ss_pred cccc------ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eecc
Confidence 6543 33345 89999999997 67888999999999999999877555 788999999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--DDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
|+.|+.+.|||... ..++..+..|...|..++|+|..+.+||+|+ .|++|++||..+. ..+..
T Consensus 319 GgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--------------~~i~~ 383 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--------------ARIDS 383 (484)
T ss_pred CCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC--------------cEecc
Confidence 99999999999965 4568899999999999999999888999975 6999999999862 23332
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEE-eCCCcEEEEeCCCc
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSV-ADDNTVQVWQMTDS 392 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~-~~dg~i~iw~~~~~ 392 (406)
.. -...|.+|.|++..+-++.+- -.++.|.||++.+-
T Consensus 384 vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 384 VD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred cc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 22 346799999999986444443 35678999999773
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=179.59 Aligned_cols=206 Identities=20% Similarity=0.335 Sum_probs=170.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
......+|+..|+++.|+.++ .+||||..+|.|+||+..+... ...+...-..+.-+.|+|.+. .|++|+
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~--------~~~~~~e~~dieWl~WHp~a~-illAG~ 167 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGE--------QWKLDQEVEDIEWLKWHPRAH-ILLAGS 167 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCce--------EEEeecccCceEEEEeccccc-EEEeec
Confidence 445677999999999999999 6999999999999999998433 444545556788899999877 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-----------
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----------- 255 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------- 255 (406)
.||.+.+|.+.+... .+.+.+|..++++-.|.| +++.++++..||+|++|++.++.++..+.
T Consensus 168 ~DGsvWmw~ip~~~~------~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~ 240 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQAL------CKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS 240 (399)
T ss_pred CCCcEEEEECCCcce------eeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc
Confidence 999999999988532 366788999999999999 58888899999999999998665432221
Q ss_pred --------------------------------------------------------------------------------
Q 015484 256 -------------------------------------------------------------------------------- 255 (406)
Q Consensus 256 -------------------------------------------------------------------------------- 255 (406)
T Consensus 241 ~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 241 LNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred cccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence
Q ss_pred ----ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 256 ----AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 256 ----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
.|...|..+.|-+ .. +|++++.+|.|+.||.|++.. +..+.+|...|.+++++|+.+ +++|+|.|++.+||+
T Consensus 321 R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRtG~l-~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDARTGQL-KFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFE 396 (399)
T ss_pred heeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccccce-EEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEe
Confidence 1334466666666 34 788889999999999999776 889999999999999999997 799999999999998
Q ss_pred CC
Q 015484 332 LN 333 (406)
Q Consensus 332 ~~ 333 (406)
..
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 64
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=194.99 Aligned_cols=217 Identities=18% Similarity=0.321 Sum_probs=169.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+++|+..|.++++.|.|. .|++|+.|.+|++||+...... +.++.+. ......|++++|++. +..|++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~T-g~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVT-GDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCC-CCeEEEEecC
Confidence 456889999999999999999 9999999999999999865422 1122111 234457999999995 5555566667
Q ss_pred CcEEEEECCCCcccc------------cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----C
Q 015484 238 CQLMIWDLRTNQTQQ------------RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----S 300 (406)
Q Consensus 238 g~i~i~d~~~~~~~~------------~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~ 300 (406)
...+++|-....... .-++|...++|.+|+|.....+++++.||++++||+.+.+..+..+. +
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 789999955332211 22678899999999999988999999999999999988765444443 2
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEEE
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISSV 378 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s~ 378 (406)
..-+++.++|+|+++ +||+|+.||.|.+|+...... ........+|.. .|++|.||++|+ .|+|-
T Consensus 316 ~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSR 382 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGN-YLLSR 382 (641)
T ss_pred cccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccc-hhhhc
Confidence 334789999999998 599999999999999866332 233444567776 899999999999 58899
Q ss_pred eCCCcEEEEeCCCc
Q 015484 379 ADDNTVQVWQMTDS 392 (406)
Q Consensus 379 ~~dg~i~iw~~~~~ 392 (406)
|.|+++++||+..-
T Consensus 383 g~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQF 396 (641)
T ss_pred cCCCceeeeecccc
Confidence 99999999999753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=180.33 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=175.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+.|..-|..++|+.+. +.|++|+.+..++|||++.. --|...+.+|.+.|..+-|..... .|++++.|
T Consensus 94 lhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p-------~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd 164 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRP-------KAPPKEISGHTGGIRTVLWCHEDK-CILSSADD 164 (334)
T ss_pred hhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCC-------CCCchhhcCCCCcceeEEEeccCc-eEEeeccC
Confidence 4577899999999999988 67999999999999999984 344677889999999999999777 88888999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++|++||.+++.....+ . .+.+|+++..++ +++++ +....+.|.+||..+...++.++ ..-.|.+.+.+|
T Consensus 165 ~tVRLWD~rTgt~v~sL------~-~~s~VtSlEvs~-dG~il-Tia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSL------E-FNSPVTSLEVSQ-DGRIL-TIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred CceEEEEeccCcEEEEE------e-cCCCCcceeecc-CCCEE-EEecCceeEEeccccccceeecc-CccccccccccC
Confidence 99999999998643222 2 467899999997 66766 66677889999999988888776 355688999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+.. .+++|+.|..++.||..++.. +.. .++|.++|.|+.|+|+|. +.++|++||+|+||.....
T Consensus 235 ~k~-~fVaGged~~~~kfDy~TgeE-i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 235 KKE-FFVAGGEDFKVYKFDYNTGEE-IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCc-eEEecCcceEEEEEeccCCce-eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 987 999999999999999999877 444 489999999999999998 7999999999999998763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=197.32 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=211.6
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVS 184 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s 184 (406)
......+.-..+|.|+.|+|..++++|.|..+|.|.+||+......+. .........|..+++.+.|..+.. .-+++
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--cccccccccCCcCeEEEEEeccCCCCceEE
Confidence 444556677899999999999999999999999999999998654221 111223346889999999987543 24889
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeee------ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--------
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYE------AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-------- 250 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-------- 250 (406)
++.||.|+.|+++............... .....+++++|.+.+...|+.|+.+|.|.--+-...+.
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 9999999999887643321111111111 22356899999999999999999999998744332221
Q ss_pred cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 251 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
...+..|.++|+++.++|.+..++++++ |.+++||.......|+..+..+...|++++|||..+.+++++..||.|.||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 2244668899999999999996677666 899999998866778888888888999999999999999999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
|+..... .++....-+....+.+.|++.|+ +|++|...|.+++|++.........
T Consensus 470 DLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~~l~~~~~ 524 (555)
T KOG1587|consen 470 DLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSESLAVPSP 524 (555)
T ss_pred hhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCchhhccCc
Confidence 9986332 23333333456678889999999 8999999999999999888765544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=166.13 Aligned_cols=220 Identities=23% Similarity=0.401 Sum_probs=175.9
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc--------------------------------
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-------------------------------- 152 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------------------------- 152 (406)
.....+...|.+.|.|.+|+|.| .+||+|+.|.+|++.-++......
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 45555566689999999999999 699999999999987665432211
Q ss_pred ------------cCCCCCceeeeCCCCCeeEE-EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec---cCc
Q 015484 153 ------------QDDCDPDLRLKGHDKEGYGL-SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA---HES 216 (406)
Q Consensus 153 ------------~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~ 216 (406)
-+...+...+.+|++.|.++ .|+ +. .+++|+.|.+|++||++-......+. ..+.. ..+
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~--~~~~~~gless 232 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLD--NDFHDGGLESS 232 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeecc--CcccCCCcccc
Confidence 02344566677788777766 454 55 89999999999999998765433332 11221 236
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC---CC
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM---TV 293 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~ 293 (406)
.|.+++..| .++++++|-.|....+||++.++.++.+..|...|.|+.|+|... ++++++.|..|++-|+... +.
T Consensus 233 avaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 233 AVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred eeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccchhhcC
Confidence 799999999 799999999999999999999999999999999999999999766 9999999999999998742 34
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
++.....|+..+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 5667778999999999999985 48899999999999764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=196.23 Aligned_cols=245 Identities=18% Similarity=0.318 Sum_probs=198.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
++.|....+.|+|.|+| .+|.+++.||.|++|+.......+ .++..+...|.+++-. .. +|++|+.+++
T Consensus 9 Ryaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P-------~ti~~~g~~v~~ia~~--s~-~f~~~s~~~t 77 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEP-------ETIDISGELVSSIACY--SN-HFLTGSEQNT 77 (933)
T ss_pred hhhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCC-------chhhccCceeEEEeec--cc-ceEEeeccce
Confidence 46899999999999999 589999999999999988753221 1222277788888764 33 8999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|.+|.+..+..... +....-++++++|+- ++.++|.|+.|-.|++.++........+.+|..+|.++.|+|.+
T Consensus 78 v~~y~fps~~~~~i------L~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTI------LARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred EEEeeCCCCCccce------eeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 99999988765432 233567899999996 78999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILS-------SH-TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h-~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
. +||+.+.||.|++||+.++.. ..++. .- ...+..++|+|++.. ++..+.|+.|++|+....
T Consensus 151 ~-fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~w------- 220 (933)
T KOG1274|consen 151 N-FLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGW------- 220 (933)
T ss_pred C-EEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCc-------
Confidence 9 999999999999999997653 22221 11 456788999999876 677777999999998873
Q ss_pred cccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 343 DAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 343 ~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...+.+ ..+...+.++.|+|+|.| ||+++.||.|.|||+.+
T Consensus 221 -------e~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 221 -------ELQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred -------eeheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 333333 234445999999999995 89999999999999997
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=197.46 Aligned_cols=254 Identities=20% Similarity=0.279 Sum_probs=204.8
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEe-cCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSW-SPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~ 190 (406)
-.|..-|+.+..+.++ ..|++++.|-+|++|+..... .-...++..|...|.|++. -++.. .+|+|+-|+.
T Consensus 70 e~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~ 141 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRK 141 (735)
T ss_pred hhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------chhHhhhhcccchheeeeecccCce-eEEecCCCcc
Confidence 3588999999999988 468999999999999998742 2346778899999999999 55555 9999999999
Q ss_pred EEEEeCCCccC-----CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 191 ICLWDVSALAQ-----DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 191 i~iwd~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
|.+||++++.. ...+..-....++...|.+++.++ .+.+|++|+..+.|++||.++.+.+..+.+|...|..+.
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence 99999997632 111111112227888999999997 678999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
.+++|. .+++++.||+|++||++...+ +.++..|...|.++..+|.-. .+.+|+.||.|..=|+++..+
T Consensus 221 ~~dDGt-~~ls~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~-------- 289 (735)
T KOG0308|consen 221 VNDDGT-RLLSASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAK-------- 289 (735)
T ss_pred EcCCCC-eEeecCCCceEEeeeccccce-eeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchh--------
Confidence 999999 899999999999999998665 888999999999999999987 599999999999999987321
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+++. ...+|..+..+..... +-+++.|+.|+-|...-.
T Consensus 290 ---~tlick---~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 290 ---STLICK---EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ---heEeec---CCCchhhhhhccccCC-ceeeeccccceecCCccc
Confidence 122322 2345677776644332 245567888888876544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=170.69 Aligned_cols=253 Identities=16% Similarity=0.185 Sum_probs=191.8
Q ss_pred CeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC
Q 015484 76 NFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD 155 (406)
Q Consensus 76 n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 155 (406)
|.|.+|.++-. +.+..+....|.++|.+++|+.+| ..+++|+.|+.+++||+.+.
T Consensus 50 ~tVR~wevq~~-----------------g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~------- 104 (347)
T KOG0647|consen 50 GTVRIWEVQNS-----------------GQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASG------- 104 (347)
T ss_pred CceEEEEEecC-----------------CcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCC-------
Confidence 77888877722 122234466899999999999999 67999999999999999984
Q ss_pred CCCceeeeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
....+..|.++|.++.|-+... ..|+|||.|.+|+.||.+..... ..+. -...+.++..- ..+++++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv------~t~~-LPeRvYa~Dv~---~pm~vVa 172 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV------ATLQ-LPERVYAADVL---YPMAVVA 172 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee------eeee-ccceeeehhcc---CceeEEE
Confidence 2566788999999999987432 37999999999999999875432 2222 24556666543 5677888
Q ss_pred ecCCcEEEEECCCCccccc-c-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCC--------
Q 015484 235 GDDCQLMIWDLRTNQTQQR-V-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTE-------- 303 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~-~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~-------- 303 (406)
..++.|.+|+++.+..... + ...+-.++||+..++.+ ..|.|+-.|.+.+..+..+. ..-..++.|..
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 8999999999987644322 2 23456789999998888 56899999999998887642 22345555652
Q ss_pred -CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 304 -EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 304 -~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.|++|+|+|... .|+|++.||++.+||-.. ...+.....|..+|++.+|+.+|..+..+.|.|
T Consensus 252 YaVNsi~FhP~hg-tlvTaGsDGtf~FWDkda--------------r~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 252 YAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDA--------------RTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EEecceEeecccc-eEEEecCCceEEEecchh--------------hhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 588999999887 599999999999999876 234455567889999999999999666666655
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=171.26 Aligned_cols=210 Identities=17% Similarity=0.303 Sum_probs=181.2
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
..+++|..+++.|.++.+|. +|++++.|.+..+|--.++. .+.++.+|.+.|+|+..+. ..+.+++|+.|.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGe------rlGty~GHtGavW~~Did~-~s~~liTGSAD~t 75 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGE------RLGTYDGHTGAVWCCDIDW-DSKHLITGSADQT 75 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCc------eeeeecCCCceEEEEEecC-Ccceeeeccccce
Confidence 45789999999999999999 99999999999999876664 2477899999999999986 6788889999999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCCC------CCCcEEecCCCCCeEEE
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRKM------TVPLHILSSHTEEVFQV 308 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~~------~~~~~~~~~h~~~v~~i 308 (406)
+++||+.+|+++..++ ...+|..+.|++.|. +++.... .+.|.++|++.. +.|+..+..+...++.+
T Consensus 76 ~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 76 AKLWDVETGKQLATWK-TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred eEEEEcCCCcEEEEee-cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 9999999999998887 578899999999998 4444432 358999999843 35678888888999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
-|.|-++ .|++|.+||.|.+||+++.. +++.+...|...|++++++++.. ++++++.|..-++||
T Consensus 154 ~Wg~l~~-~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 154 LWGPLGE-TIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVD 218 (327)
T ss_pred eecccCC-EEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCcc-eEEecccCccceeee
Confidence 9999998 59999999999999999732 55666677899999999999999 689999999999999
Q ss_pred CCCccc
Q 015484 389 MTDSIY 394 (406)
Q Consensus 389 ~~~~~~ 394 (406)
+.+-.+
T Consensus 219 ~~tl~v 224 (327)
T KOG0643|consen 219 VRTLEV 224 (327)
T ss_pred ccceee
Confidence 987543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=175.25 Aligned_cols=254 Identities=17% Similarity=0.271 Sum_probs=191.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+.|.. ..|+.|++.| .+||+|..+|.|.|||+.+ ..+...+.+|..+|++++||++|+ +|+|+|.|
T Consensus 18 ~~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T--------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D 86 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT--------FRIARMLSAHVRPITSLCWSRDGR-KLLTSSRD 86 (405)
T ss_pred ceeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc--------cchhhhhhccccceeEEEecCCCC-EeeeecCC
Confidence 34455555 8999999999 7999999999999999998 445778899999999999999999 99999999
Q ss_pred CeEEEEeCCCccCCceeee-----------------ee----------eeec--c-----------CccEEEEEeeCCCC
Q 015484 189 NKICLWDVSALAQDKVIDA-----------------MH----------VYEA--H-----------ESVVEDVSWHLKNE 228 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~-----------------~~----------~~~~--~-----------~~~i~~i~~~p~~~ 228 (406)
..|.+||+..+.....+.. +. .+.. | .....+..|.+ .+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RG 165 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CC
Confidence 9999999998754322210 00 0000 0 00001112444 56
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccC-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------CcEEec
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------PLHILS 299 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~ 299 (406)
+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+ .|+.-+.|..|+.|+++.... +.+.+.
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 889999999999999999999888876555 7889999999999 899999999999999873211 111111
Q ss_pred --CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEE
Q 015484 300 --SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVIS 376 (406)
Q Consensus 300 --~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~ 376 (406)
..+..-.+++|+.+|.+++++.+....++||.... ..++..+.|.. ....++.|+|-.+ +++
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~--------------GsLVKILhG~kgE~l~DV~whp~rp-~i~ 309 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI--------------GSLVKILHGTKGEELLDVNWHPVRP-IIA 309 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCC--------------cceeeeecCCchhheeeccccccee-eee
Confidence 11234567899999997666666778899999776 46777777766 5688999999988 677
Q ss_pred EEeCCCcEEEEeCCC
Q 015484 377 SVADDNTVQVWQMTD 391 (406)
Q Consensus 377 s~~~dg~i~iw~~~~ 391 (406)
+. ..|.++||....
T Consensus 310 si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 310 SI-ASGVVYIWAVVQ 323 (405)
T ss_pred ec-cCCceEEEEeec
Confidence 76 689999998753
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=172.70 Aligned_cols=234 Identities=17% Similarity=0.213 Sum_probs=180.9
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....++.|..++.+++|.++. .+++|+.||.|+.+|+.... ...+..|..+|.||..++... .+++|+
T Consensus 46 ~l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~---------~~~igth~~~i~ci~~~~~~~-~vIsgs 113 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN---------EDQIGTHDEGIRCIEYSYEVG-CVISGS 113 (323)
T ss_pred hhhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCc---------ceeeccCCCceEEEEeeccCC-eEEEcc
Confidence 456678899999999999865 58999999999999999842 455778999999999998665 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEE
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYL 264 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i 264 (406)
.|++|++||.+..... ..+. ....|.++... ++.|++|+.+..+.+||+|+....... ...+-.++|+
T Consensus 114 WD~~ik~wD~R~~~~~------~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVVV------GTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred cCccEEEEeccccccc------cccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 9999999999863221 1122 23478887764 677788999999999999987654332 3345678999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCC---------CeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMT---VPLHILSSHTE---------EVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~---------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
++.|++. -+++++-||.|.+=.+.... .....|+.|.. +|++|+|+|-.. .|+||+.||.|.+||+
T Consensus 184 ~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 184 ALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDL 261 (323)
T ss_pred EEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccC
Confidence 9999777 67888999988876555431 12344555653 699999999976 5999999999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.+ .+.+..+..-...|..++|+.+|. +||.++
T Consensus 262 ~~--------------rKrl~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 262 FN--------------RKRLKQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred cc--------------hhhhhhccCCCCceEEEEeccCCC-eEEEEe
Confidence 87 233344444456799999999999 677775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=189.10 Aligned_cols=274 Identities=17% Similarity=0.251 Sum_probs=207.1
Q ss_pred EEEEEeecC-CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 107 EIAQKIRVD-GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 107 ~~~~~~~h~-~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
++...+.|. ++|+.++|.-||+.++|+|+..|.+.+||++.... .......|.+.|....|.|..+ .++++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-------~~v~~nah~~sv~~~~fl~~ep-Vl~ta 306 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-------INVTRNAHYGSVTGATFLPGEP-VLVTA 306 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-------eeeeeccccCCcccceecCCCc-eEeec
Confidence 346678886 99999999999999999999999999999998322 1233447889999999999666 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------------------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------- 246 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------- 246 (406)
+.|..+++|-.+++.... +.++...+|..+..+|.|.-..+..+.+++.|++++.+++.
T Consensus 307 ~~DnSlk~~vfD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred cCCCceeEEEeeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 999999999877654322 23455568888889998886667777788888777766542
Q ss_pred ----------------------------------------------CCcc-cccc-----cccCCCeeEEEecCCCCcEE
Q 015484 247 ----------------------------------------------TNQT-QQRV-----KAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 247 ----------------------------------------------~~~~-~~~~-----~~~~~~v~~i~~~~~~~~~l 274 (406)
.... ...+ +.....+++++.++.|+ +.
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~ 463 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FV 463 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eE
Confidence 1111 0000 11224577888888888 88
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEe---cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc------
Q 015484 275 ATASSDTTVALFDMRKMTVPLHIL---SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE------ 345 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 345 (406)
+.|+..|.|-+|++.++-. ...+ ..|.++|++++....++ ++++++.+|.+++||+.... ........
T Consensus 464 ~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGI 540 (910)
T ss_pred EEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc-eeeeeccCCCccee
Confidence 8899999999999998654 4455 58999999999998886 79999999999999998743 11111111
Q ss_pred ----------------------CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 346 ----------------------DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 346 ----------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
....+.+..+.||.+.|++++|||+|+| |++++.|++|++||+.++.+-
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCccee
Confidence 1112233445689999999999999997 788999999999999998653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=190.94 Aligned_cols=266 Identities=18% Similarity=0.352 Sum_probs=193.7
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
++...+.|.+.|..+.|.| +...|++++.|.++++||+..... .-...+.+|...|.+++|.+.+...|++|+
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRL------VGGRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecccee------ecceeecccccccchhhhccCCCcceeecc
Confidence 3455678999999999999 668999999999999999998433 223357899999999999999998999999
Q ss_pred CCCeEEEEeCCCccCC-----------------ceeee----eeeeeccCccE----EEEEeeCCCCCEEEEEec-CCcE
Q 015484 187 HDNKICLWDVSALAQD-----------------KVIDA----MHVYEAHESVV----EDVSWHLKNENLFGSAGD-DCQL 240 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~-----------------~~~~~----~~~~~~~~~~i----~~i~~~p~~~~~l~~~~~-dg~i 240 (406)
.||.|.|||++-.... ...++ ......+...| +.+.|- +...||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcce
Confidence 9999999998753200 00000 11222333334 444443 6778888877 9999
Q ss_pred EEEECCCCccccc--------cccc---CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCC--eE
Q 015484 241 MIWDLRTNQTQQR--------VKAH---EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEE--VF 306 (406)
Q Consensus 241 ~i~d~~~~~~~~~--------~~~~---~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~--v~ 306 (406)
++||++....... +..+ ...+.++..+..|.+++|++. |+.|++|+++... .|+..+.++... -.
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeee
Confidence 9999997644221 1222 345778888888895555555 9999999998754 344445444321 22
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.-..+|++. .+++|+.|....+|.+.... .....+.||.-.|++++|.|..-.=++++++|..++|
T Consensus 322 ks~lSpd~~-~l~SgSsd~~ayiw~vs~~e-------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 322 KSELSPDDC-SLLSGSSDEQAYIWVVSSPE-------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred eeecCCCCc-eEeccCCCcceeeeeecCcc-------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 335689997 59999999999999998733 3344557899999999998854334778899999999
Q ss_pred EeCCCcccCC
Q 015484 387 WQMTDSIYRD 396 (406)
Q Consensus 387 w~~~~~~~~~ 396 (406)
|++.+++-+.
T Consensus 388 W~l~~~l~e~ 397 (720)
T KOG0321|consen 388 WRLSNGLEEI 397 (720)
T ss_pred EeccCchhhc
Confidence 9998776543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=210.78 Aligned_cols=261 Identities=25% Similarity=0.425 Sum_probs=200.5
Q ss_pred eeEEEEcCCCCcEEEEEeC----------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC---eEEE
Q 015484 118 VNRARCMPQKPNLVGTKTS----------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG---YLVS 184 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s 184 (406)
-..++|+|.++.++|+|.. +.++-||.+...... ...++...+. -....+.++|.+.+.. +|+.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--SDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--cccccccccc-ccccceeeeecccCCCccceeec
Confidence 3456899988767777754 345556655442211 1122333332 3456789999998764 5999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~ 262 (406)
|..||.|.+||...-........+.....|.+.|..+.|++..++++|+|+.||.|.|||+...+..... ......|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999988743333445567778899999999999988899999999999999999886554444 23567899
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC--CeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE--EVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~ 337 (406)
+++|+..-..+|++++.+|.+.|||+|..+ ++..+..|.+ .+..++|+|++..-|++++.|. .|.+||++...
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as- 243 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS- 243 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-
Confidence 999999888899999999999999999864 4656655544 5789999999887777777654 59999999732
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
..+..+.+|...|.++.|++.+..+++|++.|+.|.+|+.+++...
T Consensus 244 ------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 244 ------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 4455668899999999999998668999999999999999997553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=199.05 Aligned_cols=217 Identities=23% Similarity=0.409 Sum_probs=176.4
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc----------cccccCCCCCceeeeCCCCCeeEEEecCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ----------AEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 177 (406)
+.....|.+.|+|++|+|+| .+||+|++|+.|.||..... .......++....+.+|...|..++|+|+
T Consensus 62 l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred heeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 34566899999999999999 68999999999999998841 11111356678899999999999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-------
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------- 250 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------- 250 (406)
+. +|++++.|++|.+|+..+. ..+..+.+|.+.|..+.|.| -+++||+-+.|++|++|++..-..
T Consensus 141 ~~-~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 141 DS-LLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred cc-EEEEecccceEEEEccccc------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 88 9999999999999998775 34577889999999999999 789999999999999998642100
Q ss_pred ---------------------------------------------cccccccCCCeeEEEecCC------C------C--
Q 015484 251 ---------------------------------------------QQRVKAHEKEVNYLSFNPY------N------E-- 271 (406)
Q Consensus 251 ---------------------------------------------~~~~~~~~~~v~~i~~~~~------~------~-- 271 (406)
-..+-+|..++.++.|+|. . .
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 0123468888999999873 1 1
Q ss_pred --cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 272 --WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 272 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..+|+|+.|++|.||........+.........|..++|+|+|- .|.+++.||+|.+..+..
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcch
Confidence 17899999999999998665543333444567899999999996 588999999999999875
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=202.76 Aligned_cols=222 Identities=23% Similarity=0.448 Sum_probs=193.1
Q ss_pred EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee
Q 015484 131 VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV 210 (406)
Q Consensus 131 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 210 (406)
++.....-.+++|+.+. +..|...+.++..-..++ .+++|+.|..+.+|.+..... +..
T Consensus 7 ~m~~~~~t~Lr~~~~~~--------------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~------i~S 65 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE--------------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNA------ITS 65 (825)
T ss_pred cceeeeeeccccccchh--------------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCch------hhe
Confidence 33444445567777765 456888888888755566 899999999999999877543 234
Q ss_pred eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 211 YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
+.+|..+|.++.|++ ...++++|+.+|+|++||+...+.+.++.+|...+.++.|+|.+. ++|.|+.|+.+++||.|.
T Consensus 66 ~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk 143 (825)
T KOG0267|consen 66 LTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK 143 (825)
T ss_pred eeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE-Eeccccccccceehhhhc
Confidence 778999999999998 789999999999999999999999999999999999999999999 889999999999999997
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
..+ .+.+.+|...|..+.|+|+|+ +++.+++|..++|||+.. .+++..+.+|...+..+.|+|.
T Consensus 144 ~Gc-~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~a--------------gk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 144 KGC-SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTA--------------GKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cCc-eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccc--------------cccccccccccccccccccCch
Confidence 665 888999999999999999998 699999999999999986 4677778899999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCc
Q 015484 371 DPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.- ++++|+.|++|++||+.+-
T Consensus 208 e~-Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 208 EV-LLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred hh-hhccCCCCceeeeecccee
Confidence 76 8999999999999999953
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=183.87 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=200.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
....-|+++...|++ +-|++|+.-.++.|||+..... .....+....-.+++++.+|+.+ ..+++..||.|.
T Consensus 463 ~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp------rikaeltssapaCyALa~spDak-vcFsccsdGnI~ 534 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP------RIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIA 534 (705)
T ss_pred CcccceeeeEecCCC-ceEEeccccceeeeeeccCCCc------chhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEE
Confidence 345678999999999 5688889999999999987422 22334444445788999999988 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
|||+.+.. .++.+++|...+.||..++ ++..|-+|+-|.+||.||+|+++.+.... ..+.|.++..+|.++
T Consensus 535 vwDLhnq~------~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d- 605 (705)
T KOG0639|consen 535 VWDLHNQT------LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD- 605 (705)
T ss_pred EEEcccce------eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc-
Confidence 99998753 3477889999999999998 67778899999999999999998877654 567899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.+++|-.++.+.|....... ...+..|.+.|.++.|.+.|+ ++++.+.|+.+..|....+ ..+
T Consensus 606 WlavGMens~vevlh~skp~--kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyG--------------asi 668 (705)
T KOG0639|consen 606 WLAVGMENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG--------------ASI 668 (705)
T ss_pred ceeeecccCcEEEEecCCcc--ceeecccccEEEEEEecccCc-eeeecCchhhhhhccCccc--------------cce
Confidence 89999999999988877543 567788999999999999998 5999999999999988762 334
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
|... ..+.|.++..+.+.+ +|++|+.|....+|.+
T Consensus 669 Fqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred eecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 4433 356799999999999 6999999999999876
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=187.42 Aligned_cols=253 Identities=16% Similarity=0.234 Sum_probs=202.6
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CCCCCeeEEEecCCCCCeEEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s 184 (406)
+.++.+.|..-|.++..+... ..+.||+. |.|+|||+..... ..|+..+. .....|.++...|+|+ .|++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~-----k~PvsqLdcl~rdnyiRSckL~pdgr-tLiv 482 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGR-TLIV 482 (705)
T ss_pred HhhhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC-----CCccccccccCcccceeeeEecCCCc-eEEe
Confidence 445677898889999998877 46888764 6699999987533 23344333 3456789999999999 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|++-.++.|||+...... + ...+....-....++.+| +.++.++++.||.|.|||++....+..+.+|...+.||
T Consensus 483 GGeastlsiWDLAapTpr--i--kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPR--I--KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred ccccceeeeeeccCCCcc--h--hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 999999999999875321 1 112222234577788999 67888899999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
..+++|. .|.+|+-|.+|+.||+|.+.++. .. ...+.|.++..+|++++ ++.|.+.+.+.|-....
T Consensus 558 dis~dGt-klWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~dW-lavGMens~vevlh~sk---------- 623 (705)
T KOG0639|consen 558 DISKDGT-KLWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGDW-LAVGMENSNVEVLHTSK---------- 623 (705)
T ss_pred EecCCCc-eeecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCccc-eeeecccCcEEEEecCC----------
Confidence 9999998 89999999999999999876632 22 23578999999999985 99999999999888775
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-.+.+.-|.+-|.++.|.+.|+| +++.|.|+.+..|...-+
T Consensus 624 -----p~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 624 -----PEKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred -----ccceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc
Confidence 222334558889999999999996 788899999999998766
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=167.83 Aligned_cols=271 Identities=18% Similarity=0.325 Sum_probs=208.2
Q ss_pred CCeEEEEEeecCCceeEEEEc--CCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC
Q 015484 104 PKVEIAQKIRVDGEVNRARCM--PQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 177 (406)
++.+.+..+.-.-++.++.|+ |+.+..||.|+. .+.|.|..+...... ...... ..|.-+++.+.|.|+
T Consensus 33 ~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e----~~~~a~-fd~~YP~tK~~wiPd 107 (364)
T KOG0290|consen 33 PRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE----LVEDAN-FDHPYPVTKLMWIPD 107 (364)
T ss_pred cccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc----eeccCC-CCCCCCccceEecCC
Confidence 455556677778899999999 455578999875 467888777643221 111222 368889999999997
Q ss_pred CC----CeEEEecCCCeEEEEeCCCccCCceeee---eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 178 KE----GYLVSGSHDNKICLWDVSALAQDKVIDA---MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 178 ~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
.. .+|||.+ ..+++|.+........... ...-..+..++++..|+..+.+++.+.+-|-+..|||++++..
T Consensus 108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~ 185 (364)
T KOG0290|consen 108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS 185 (364)
T ss_pred ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc
Confidence 63 2566654 4799999874322111111 1122346689999999999999999999999999999998743
Q ss_pred ---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCC-
Q 015484 251 ---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADD- 324 (406)
Q Consensus 251 ---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~d- 324 (406)
...+-+|...|..|+|...+..+||+.+.||.+++||+|..+...-.... ...+...++|++...+++|+-..|
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 45567899999999999988889999999999999999987753333332 246899999999998889887765
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..|.|-|++. |...+..+++|.+.|+.++|.|..+..|+|+|.|..+-|||+..-.-
T Consensus 266 ~~V~iLDiR~-------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 266 NKVVILDIRV-------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceEEEEEecC-------------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 4699999997 45677888999999999999999888899999999999999987544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=182.32 Aligned_cols=211 Identities=21% Similarity=0.395 Sum_probs=170.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+..+.+|.+.|.|++=+|..-..+++|+.||.|++||+....+ ...+..|.+.|..|++.. ..+++++.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------~~~f~AH~G~V~Gi~v~~---~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------IRTFKAHEGLVRGICVTQ---TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh------hheeecccCceeeEEecc---cceEEecCCc
Confidence 4567899999999999997745899999999999999987644 466778999999999873 5566888888
Q ss_pred cEEEEECC--------------------------------------CCcccccccccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 239 QLMIWDLR--------------------------------------TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 239 ~i~i~d~~--------------------------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
+|+.|-+. ...++..+.-....|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 88777632 2222333333445678899999888899999999
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 360 (406)
+.|.+||+|.... ++.... ...-+.|+|+|.. ..+++|++|..++.||++... ..+..+.+|.+
T Consensus 210 rsIvLyD~R~~~P-l~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs 273 (433)
T KOG0268|consen 210 RSIVLYDLRQASP-LKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS 273 (433)
T ss_pred CceEEEecccCCc-cceeee-eccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence 9999999998654 444332 3456889999966 469999999999999999843 55677889999
Q ss_pred CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 361 KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 361 ~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.|.++.|||.|+ -+++|+.|.+|+||.+..+.-+
T Consensus 274 AV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 274 AVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred eEEEeccCCCcc-hhccccccceEEEeecCCCcch
Confidence 999999999999 6999999999999999887654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=181.01 Aligned_cols=218 Identities=16% Similarity=0.268 Sum_probs=179.5
Q ss_pred ceeeeCCCCCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+.+.|++++|+|... .++++|+.-|.|-+||+.... +....+..+..|..+|.++.|+|.+...+++.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~--~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE--KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC--CccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 455677889999999999865 689999999999999996322 22334567788999999999999999999999999
Q ss_pred CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 238 CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 238 g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
|+|++-|++...... ........+.++.|+.... .++.+..=|...+||+|..+.....+..|...|.+|+++|..+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 999999998765433 3333556677888988777 5666666679999999998876777888999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++|+|++.|++++|||++...... ..+.....|...|.++.|||.+.. |++.+.|+.|+|||..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~----------sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKA----------SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hheeecccCcceeeeehhhhcCCC----------CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999854321 123445579999999999999884 8888999999999985
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-23 Score=169.00 Aligned_cols=257 Identities=18% Similarity=0.263 Sum_probs=193.6
Q ss_pred EEEEEeecCCceeEEEEcC-------CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC---eeEEEecC
Q 015484 107 EIAQKIRVDGEVNRARCMP-------QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE---GYGLSWSP 176 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~ 176 (406)
.......-...|...+|-+ +. +++|+.+.+.-|++||.-+++. +.......|... ..+++|+|
T Consensus 96 ~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~l------raSy~~ydh~de~taAhsL~Fs~ 168 (406)
T KOG2919|consen 96 HLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKL------RASYRAYDHQDEYTAAHSLQFSP 168 (406)
T ss_pred ceeEEeccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeecccccc------ccchhhhhhHHhhhhheeEEecC
Confidence 3344455667888888873 34 6899999999999999998543 223333345443 45899999
Q ss_pred CCCCeEEEecCCCeEEEEeCCCcc-CCceeeeeee-eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALA-QDKVIDAMHV-YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 254 (406)
+|. .|++| ...+|++||+.... .-.....+.. -.+..+-|.+++|+|.+...++.++....+-||.-..+.++..+
T Consensus 169 DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll 246 (406)
T KOG2919|consen 169 DGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL 246 (406)
T ss_pred CCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee
Confidence 999 88877 56899999995433 2222211111 12346788999999998889999999999999998888889999
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEecCCCC-CeEEEE--EcCCCCCEEEEEeCCCcEEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILSSHTE-EVFQVE--WDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~--~~p~~~~~l~s~~~dg~i~iw 330 (406)
.+|.+.|+.++|+++|+ .|++|.. |-.|..||+|....|+..+..|.. .=..|. ..|.++ +|++|+.||.|++|
T Consensus 247 ggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 247 GGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVW 324 (406)
T ss_pred cccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEE
Confidence 99999999999999999 6777665 668999999998888888888876 333444 468887 79999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
|+...+. .+.....|...++.++++|--+ ++|+++.. ++|...+
T Consensus 325 dlk~~gn-------------~~sv~~~~sd~vNgvslnP~mp-ilatssGq---r~f~~~~ 368 (406)
T KOG2919|consen 325 DLKDLGN-------------EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ---RIFKYPK 368 (406)
T ss_pred ecCCCCC-------------cccccccccccccceecCcccc-eeeeccCc---eeecCCC
Confidence 9987432 2344566788899999999988 78887633 4444433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=183.28 Aligned_cols=266 Identities=19% Similarity=0.287 Sum_probs=205.5
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-------------------------------
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ------------------------------- 152 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------- 152 (406)
|........+|++.|.+|...|.| ..||+|+.||+|+||.+.++...-
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 334445566899999999999988 799999999999999998754321
Q ss_pred --------------------cC-----------C---------CCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---C
Q 015484 153 --------------------QD-----------D---------CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---N 189 (406)
Q Consensus 153 --------------------~~-----------~---------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g 189 (406)
.. . ..-+.....|...|..+.|+..|. +|++..-+ .
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~ 546 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNK 546 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcc
Confidence 00 0 000123345778889999999998 99887654 4
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|.|.++...... ..|....+.|.++.|+|....+| +++ ...|++||+-....++.+......|.+++.+|.
T Consensus 547 ~VliHQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lf-VaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLF-VAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred eEEEEeccccccc------CchhhcCCceeEEEecCCCceEE-EEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 6888888876443 22334567899999999544444 444 367999999988888888777888999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
|. -|+.|+.|+.+..||+.-...|.+++..|...+++++|++.-+ ++++|+.||++.|+.-.--.... .+.-.
T Consensus 619 GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~-----qnpli 691 (733)
T KOG0650|consen 619 GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLL-----QNPLI 691 (733)
T ss_pred CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhh-----cCCce
Confidence 99 6788999999999999988889999999999999999999987 89999999999998654311110 01113
Q ss_pred eeEEEecCCCCC----eeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 350 ELLFSHGGHKAK----ISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 350 ~~~~~~~~h~~~----v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
..+..+.+|... |.++.|+|..+| |.++|.||.|++|
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 456667888766 999999999998 6677889999998
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=180.15 Aligned_cols=244 Identities=18% Similarity=0.259 Sum_probs=198.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-CCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-DKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
-+.+|.+++|+.+. +.||.+-.+|.|.||++... +-....+.++ ...|.+++|++.+ .|++.+.+|.|.
T Consensus 24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSIT 93 (691)
T ss_pred eccceEEEEEeccC-CceeeeccCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEE
Confidence 46899999999988 57999999999999999983 4445556655 4679999999644 699999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cccccCCCeeEEEecCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~ 270 (406)
-||+.+.+. +.......++|++++.+| .+..++.|++||.+..++...++... .+...++.|.+++|+|++
T Consensus 94 EwDl~~lk~------~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 94 EWDLHTLKQ------KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred EEecccCce------eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 999988654 344556778999999999 67888899999988888887766533 335557899999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEE-----ecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHI-----LSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
. .+++|+.||.|++||...+.. +.. ... ...-|.++.|-.++ .|++|..-|+|.+||...
T Consensus 167 ~-~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~-------- 234 (691)
T KOG2048|consen 167 T-KIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIF-------- 234 (691)
T ss_pred c-EEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccC--------
Confidence 8 899999999999999998664 331 111 22347888888776 499999999999999887
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..++..+..|.+.|.+++.++++. .+.++|.|+.|.-+...++.
T Consensus 235 ------gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 235 ------GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ------cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCc
Confidence 467778888999999999999988 57888999999988887763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=175.41 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=172.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHD 188 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~d 188 (406)
..+.+...+..++|+|++..++++++.++.|++||..+... ...+..+. .+..++|+|+++ .+ ++++.+
T Consensus 25 ~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~g~-~l~~~~~~~ 94 (300)
T TIGR03866 25 RTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--------IGTLPSGP-DPELFALHPNGK-ILYIANEDD 94 (300)
T ss_pred EEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--------EEeccCCC-CccEEEECCCCC-EEEEEcCCC
Confidence 34444455788999999965567788899999999987321 23333333 346789999988 55 455678
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
+.|++||+.+... +..+. +...+.+++|+| ++.+++++..++ .+.+||.++++....+. ......+++|+
T Consensus 95 ~~l~~~d~~~~~~------~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s 165 (300)
T TIGR03866 95 NLVTVIDIETRKV------LAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT 165 (300)
T ss_pred CeEEEEECCCCeE------EeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC
Confidence 9999999987432 12222 233467899999 677777777664 56778998876654443 23345789999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++..+++++..++.|++||+++.+. +..+..+. .....++|+|+++.++++.+.++.+.+||+.+.
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~----- 239 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY----- 239 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-----
Confidence 99984445556689999999998653 33332221 123578999999865566666788999998752
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+.+.... +...+.+++|+|++++++++++.+|.|++||+.++..
T Consensus 240 ---------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 240 ---------EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ---------cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 2222221 2346889999999995444456799999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=186.16 Aligned_cols=249 Identities=18% Similarity=0.289 Sum_probs=203.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
...-.-.+++++.+|++ ..||+|..-|+++||++.. .........|..+|.|+.++.. +..+|++++.|
T Consensus 455 ~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd 525 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD 525 (1080)
T ss_pred hcCcccceEEEEECCCc-ceecccCccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCC
Confidence 34455689999999999 5799999999999999998 3446678899999999999863 23389999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCC-cccccc-----cccCCCe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTN-QTQQRV-----KAHEKEV 261 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~-----~~~~~~v 261 (406)
.-|.+||+... +..++++.+|...|+++.|...+ +..+++++.|..|.+ +.... .....+ ......+
T Consensus 526 RlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 526 RLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceE
Confidence 99999998653 34567788999999999998643 256779999987764 43331 111122 1224568
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+.++..|... ++++++.|..|+|||+.+++. .+.|+ .|.+....+...|.|- ++++.+.|.++.++|+.+
T Consensus 600 YDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s---- 672 (1080)
T KOG1408|consen 600 YDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS---- 672 (1080)
T ss_pred EEeeeCCCcc-eEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc----
Confidence 8999999988 999999999999999999876 66665 4667889999999997 599999999999999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++....||...|+.+.|.++-+ .|++.+.||.|.||.+...
T Consensus 673 ----------gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 673 ----------GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ----------chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECchh
Confidence 577888899999999999999999 5889999999999999764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=171.66 Aligned_cols=258 Identities=14% Similarity=0.197 Sum_probs=193.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+.|+++.|+|..+ +|++++.||+++||.+.... ...+..+.--..+|.+.+|.|+|...+++++....+..||
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCcc------ChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 7999999999884 78999999999999998742 2334555556789999999999987899999999999999
Q ss_pred CCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
+.+.+..+. ....++ ...+.....+| ++++++..+..|.|.+.-..+++.+..++ -.+.|..++|+.++. .|
T Consensus 287 le~ak~~k~----~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk-~l 359 (514)
T KOG2055|consen 287 LETAKVTKL----KPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK-EL 359 (514)
T ss_pred ccccccccc----cCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc-EE
Confidence 988655322 222232 34566777887 67899999999999999999999988887 577899999999998 67
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc-----cccc-----
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ-----LELD----- 343 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~----- 343 (406)
++.+.+|.|.+||++.... ++.+.... -.-++++.++++. +||+|+..|.|.|||..+..... ....
T Consensus 360 ~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 7777789999999998754 55554322 2346677788997 69999999999999976532110 0000
Q ss_pred -------c-----------cCC-------CCeeEEEe----cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 344 -------A-----------EDG-------PPELLFSH----GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 344 -------~-----------~~~-------~~~~~~~~----~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. ... |...++.. ....+.|++++|+|.+. ++|.|..+|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence 0 000 11111110 12335699999999998 69999999999999875
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=173.74 Aligned_cols=246 Identities=16% Similarity=0.244 Sum_probs=189.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
+++++-.....+.+|.+..... .....--.++|.+++-+|.|. +|+.|+..|.|.+|.+.++.. +
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~--------~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~L------L 116 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQ--------VVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGIL------L 116 (476)
T ss_pred heeeecccCccccccccCchhh--------hhhhcccccceeeeecCCCce-EEEeecccCcEEEEEeccccH------H
Confidence 3444444556799999987432 112223457899999999998 888888999999999999854 3
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC---------CCcccccccccCCCeeEEEecCCC-CcEEEEEe
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR---------TNQTQQRVKAHEKEVNYLSFNPYN-EWVLATAS 278 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~~~ 278 (406)
..+.+|-..|+|+.|+- ++.+|++|+.||.|.+|++- +-++...+..|.-+|+.+...+.+ ...+++++
T Consensus 117 ~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred HHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 55578999999999996 78999999999999999874 234466778899999999887652 23799999
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc--ccccCCCCeeEEEec
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE--LDAEDGPPELLFSHG 356 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (406)
.|.++++||+..+.. +..+. ....+.+++.+|-+. .+..|+.+|.|.+.++......... .............+.
T Consensus 196 ~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred CCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 999999999998765 44443 357899999999986 6999999999999998764421110 001111124455667
Q ss_pred CCCC--CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 357 GHKA--KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~--~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
||.+ .|++++.+-||. +|++|+.||.|.|||+.+..+
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHH
Confidence 8888 999999999999 899999999999999987654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=164.44 Aligned_cols=232 Identities=16% Similarity=0.265 Sum_probs=176.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccc----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQ----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 205 (406)
-|++|+....|.=+++....... .....|...+..|.++|++++.+ ++ ++++|+.|-+|+|||+.+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~ql--- 76 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQL--- 76 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhh---
Confidence 36778888877777776554111 12355578889999999999996 66 9999999999999999886432
Q ss_pred eeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 206 DAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
..+-.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-..+..+++|...|+.++.+|.+. +.++.+.|+.++
T Consensus 77 ---g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 77 ---GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred ---cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 4456789999999998732 22677999999999999999999999999999999999999999 888888999999
Q ss_pred EEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee
Q 015484 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 364 (406)
+||+-.++.....--. ..-+.+.|+|.|.+ ++.++.+ .|-||.+.... ++..-.....+.+
T Consensus 153 ~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd~-F~v~~~~-~i~i~q~d~A~---------------v~~~i~~~~r~l~ 213 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLK--NKATLVSWSPQGDH-FVVSGRN-KIDIYQLDNAS---------------VFREIENPKRILC 213 (362)
T ss_pred eehhhcCccceeeccC--CcceeeEEcCCCCE-EEEEecc-EEEEEecccHh---------------Hhhhhhcccccee
Confidence 9999887652222222 22344999999986 5555544 68999987621 1111112245777
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 365 FSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.|-..+ .+++|+.|+.|.+||.++.
T Consensus 214 ~~~l~~~--~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 214 ATFLDGS--ELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred eeecCCc--eEEEecCCceEEEeccCCC
Confidence 7776554 4789999999999999874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=175.64 Aligned_cols=235 Identities=17% Similarity=0.238 Sum_probs=187.5
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.+....+.+-. .-.|++..... .++++|+..+.|+|||++.. .....+++|+..|+++.++-.+. +||+
T Consensus 70 ~Vp~~~k~~gd-~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~k--------l~hr~lkdh~stvt~v~YN~~De-yiAs 138 (673)
T KOG4378|consen 70 EVPRVRKLTGD-NAFCVACASQS-LYEISGGQSGCVKIWDLRAK--------LIHRFLKDHQSTVTYVDYNNTDE-YIAS 138 (673)
T ss_pred ccceeeccccc-hHHHHhhhhcc-eeeeccCcCceeeehhhHHH--------HHhhhccCCcceeEEEEecCCcc-eeEE
Confidence 34444444332 34444444444 68999999999999999862 33567889999999999999888 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNY 263 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~ 263 (406)
++..|.|.|..+.++.....+. ......|.-+.|+|....+|.+++++|.|.+||+....+...+ ..|..+...
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~-----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~g 213 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFT-----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRG 213 (673)
T ss_pred eccCCcEEEEecccCcccccee-----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCc
Confidence 9999999999998875433221 1123457789999988888999999999999999987776655 779999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|+|+|.++.+|++.+.|..|.+||.+.... ...+. -..+...++|.++|. +|++|...|.|..||++.
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~--------- 281 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS--------- 281 (673)
T ss_pred ceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCce-EEEeecCCceEEEEeccc---------
Confidence 999999998999999999999999996543 33333 356889999999995 699999999999999997
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
.+.++.....|...|++++|-|.-
T Consensus 282 ----~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 282 ----TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ----CCCCceEeeecccceeEEEeeecc
Confidence 246677778899999999998763
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=162.21 Aligned_cols=235 Identities=19% Similarity=0.330 Sum_probs=179.9
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-------CeEEEEeCCCccCCc---eee
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-------NKICLWDVSALAQDK---VID 206 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~---~~~ 206 (406)
|+.|.+.++...... .....+..|.+.|+.++-+|.+++.|+|+..+ ..+.||.+....... .+.
T Consensus 39 dNqVhll~~d~e~s~-----l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSE-----LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccch-----hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 677888777764332 22445677889999999999988778777552 247899987643321 233
Q ss_pred eeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccc-----cccCCCeeEEEecCCC-CcEEEEEe
Q 015484 207 AMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRV-----KAHEKEVNYLSFNPYN-EWVLATAS 278 (406)
Q Consensus 207 ~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-----~~~~~~v~~i~~~~~~-~~~l~~~~ 278 (406)
++..+. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+ ..+....++-+|+|.. .+.+++ .
T Consensus 114 ~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t 190 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-T 190 (370)
T ss_pred HhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-e
Confidence 333333 3456899999999 556665444 88999999987765 3322 2356678889999943 225554 4
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.|+++..||+|+.++....-.+|...|..+.|+|+.+++|++|+.||.|+|||.+. +...++.+.+|
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~-------------tk~pv~el~~H 257 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK-------------TKFPVQELPGH 257 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC-------------CCccccccCCC
Confidence 58899999999988867777889999999999999999999999999999999997 34677888999
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...|++++|+|....++.+||.|..|.+|....-
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999999987779999999999999987543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=179.14 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=181.2
Q ss_pred eEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 119 NRARCMP--QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 119 ~~i~~~p--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+..|++ ...++||.+..+|.|.++|........+ -........|...|..+.|-| |+..|++++.|.++++||+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e--e~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE--ERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchh--hhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeee
Confidence 3355654 4557999999999999999887433211 112345668999999999999 6659999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--------------------cc----
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--------------------QQ---- 252 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~---- 252 (406)
...... -...+.+|.+.|.+++|.|.+...|++|+.||.|.|||++.... .+
T Consensus 130 k~s~l~----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 130 KTSRLV----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred ccceee----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 886432 22457789999999999999999999999999999999984331 00
Q ss_pred ---cccccCCCeeE---EEecCCCCcEEEEEeC-CCcEEEEeCCCCCC-----CcE--EecCC---CCCeEEEEEcCCCC
Q 015484 253 ---RVKAHEKEVNY---LSFNPYNEWVLATASS-DTTVALFDMRKMTV-----PLH--ILSSH---TEEVFQVEWDPNHE 315 (406)
Q Consensus 253 ---~~~~~~~~v~~---i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~-----~~~--~~~~h---~~~v~~i~~~p~~~ 315 (406)
.-+++...|.+ +.+..|.. .||+++. |+.|+|||+|.... +.. .+..| ...+.++.....|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 01223333333 34444555 7888887 99999999997643 222 22223 33578888888888
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC--eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK--ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++|+|. |+.|++|++..... ..++.+.++... -..-..+|++. .+++|+.|....+|.+.+-.
T Consensus 285 ~L~AsCt-D~sIy~ynm~s~s~------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 285 YLFASCT-DNSIYFYNMRSLSI------------SPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred eEEEEec-CCcEEEEeccccCc------------CchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCcc
Confidence 7666666 99999999987442 223333333221 11234688998 58899999999999998764
Q ss_pred c
Q 015484 394 Y 394 (406)
Q Consensus 394 ~ 394 (406)
.
T Consensus 351 ~ 351 (720)
T KOG0321|consen 351 A 351 (720)
T ss_pred C
Confidence 3
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=176.29 Aligned_cols=262 Identities=18% Similarity=0.277 Sum_probs=205.2
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---------------------------------------
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ--------------------------------------- 152 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------------------------- 152 (406)
.+|.+-|+++.|+|.+ ..|++++.|.++.+|...+....-
T Consensus 264 ~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 3899999999999998 468889999999999876541100
Q ss_pred -----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC
Q 015484 153 -----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 153 -----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 227 (406)
...+.+.....||.+.|.+++|.|.|. +|++++.|.+-|+|-.-. ++ .....+...+-|...++|++|-+ +
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg-~q-~~wHEiaRPQiHGyDl~c~~~vn-~ 418 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWG-RQ-QEWHEIARPQIHGYDLTCLSFVN-E 418 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccc-cc-cceeeecccccccccceeeehcc-C
Confidence 012233445678999999999999999 999999999999997652 22 22334445566888999999986 5
Q ss_pred CCEEEEEecCCcEEEEECC-------------------------------------------CCcc--------------
Q 015484 228 ENLFGSAGDDCQLMIWDLR-------------------------------------------TNQT-------------- 250 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~-------------------------------------------~~~~-------------- 250 (406)
+..|++|.+...+|+|+.. ++..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 7888899999999999653 0000
Q ss_pred -------------------cccccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 251 -------------------QQRVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 251 -------------------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
+..+.+|.-.|++++.+|+++ ++|+++... .|++|+..+... +..+.+|.-.|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLTVT 576 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLTVT 576 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhh-hheecccceEEE
Confidence 012245777899999999999 999988653 689999988766 678999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
.++|+|+++ +|++.+.|.++.+|.......... -......|..-|+++.|+|++.+ ++|++.|.+|++
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~----------~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkV 644 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEF----------RFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKV 644 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhh----------hhccccccceEEEEcccCcccce-eEEecCCceEEE
Confidence 999999997 699999999999999854222111 12225679999999999999996 999999999999
Q ss_pred EeCCCc
Q 015484 387 WQMTDS 392 (406)
Q Consensus 387 w~~~~~ 392 (406)
|...+.
T Consensus 645 W~~~~~ 650 (764)
T KOG1063|consen 645 WEEPDL 650 (764)
T ss_pred EeccCc
Confidence 999887
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-22 Score=164.47 Aligned_cols=248 Identities=19% Similarity=0.337 Sum_probs=185.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC-CCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
..+|++...|.|++||..+. .....++++...+..++|... +.+.+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~--- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR--- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh---
Confidence 46899999999999999883 336678889999999999875 555899999999999999998665432
Q ss_pred eeeeeccC-ccEEEEEeeCCCCCEEEEEe----cCCcEEEEECCCCcc-cccc-cccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 208 MHVYEAHE-SVVEDVSWHLKNENLFGSAG----DDCQLMIWDLRTNQT-QQRV-KAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 208 ~~~~~~~~-~~i~~i~~~p~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
..+..+. .+..+++.+. ..+++++|+ .+-.|.+||+|..+. +..+ ..|...|+++.|+|..+++|++|+.|
T Consensus 110 -~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 110 -ISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred -eeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 2333444 4666776654 567787775 467899999998776 5544 77999999999999999999999999
Q ss_pred CcEEEEeCCCCCC--CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc--------------
Q 015484 281 TTVALFDMRKMTV--PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-------------- 344 (406)
Q Consensus 281 g~i~vwd~~~~~~--~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------- 344 (406)
|.|.+||+..... ++.....|...|.++.|...+-.-|.+-+......+|+++...+.......
T Consensus 188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred ceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 9999999986542 344445677889999999887334778888999999999875432111000
Q ss_pred --------c---------C-CCCee---------------EEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 345 --------E---------D-GPPEL---------------LFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 345 --------~---------~-~~~~~---------------~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+ . ..... ...+ .+|...|.++.|...+. ++.|||+||.+.+|...
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQAWKVE 346 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEEEecC
Confidence 0 0 00000 1112 23667788888987777 89999999999999963
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=163.05 Aligned_cols=312 Identities=17% Similarity=0.260 Sum_probs=213.9
Q ss_pred ChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCC
Q 015484 24 TPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVI 103 (406)
Q Consensus 24 ~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~ 103 (406)
.+|.|.......-.-|.+.++|-+..... ..-+++|-. .|.+.+.++.-. .. .
T Consensus 25 ~~yk~t~~l~ed~~~~I~gv~fN~~~~~~---------e~~vfatvG----~~rvtiy~c~~d--~~------------i 77 (385)
T KOG1034|consen 25 RSYKYTNHLKEDHNKPIFGVAFNSFLGCD---------EPQVFATVG----GNRVTIYECPGD--GG------------I 77 (385)
T ss_pred cceEeeeehhccCCCccceeeeehhcCCC---------CCceEEEeC----CcEEEEEEECCc--cc------------e
Confidence 35666666665656677888885532222 122333332 256666554421 10 0
Q ss_pred CCeEEEEEeecCCceeEEEEcCC---CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQ---KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
..++....-.|......++|+-+ +.-++|+|+.-|.|+|.|+.+. +....+.+|...|..+.+.|...+
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--------~~~~~~~ghG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--------QCSKNYRGHGGSINEIKFHPDRPQ 149 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--------hhccceeccCccchhhhcCCCCCc
Confidence 01111222246667777788753 3347888889999999999884 446789999999999999999988
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-------
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR------- 253 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------- 253 (406)
+++++|.|.+|++|++++..+... +.-..+|...|.++.|++ ++..|++++.|.+|++|++...+....
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~V---fGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAV---FGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEE---ecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 999999999999999999755332 244568999999999998 677999999999999999984321110
Q ss_pred ---------------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-------------cEEec
Q 015484 254 ---------------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-------------LHILS 299 (406)
Q Consensus 254 ---------------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~ 299 (406)
-.-|...|-|+.|- |+ ++++-+.++.|..|.....++. +..+.
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 12345556666664 55 8888888999999988432221 22333
Q ss_pred CCCCCeEEE--EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 300 SHTEEVFQV--EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 300 ~h~~~v~~i--~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.....|.-| +|.|-++ +||.|.+.|.|.+||++..... ......+.-....|.+.+|+.++. +|+.
T Consensus 303 ~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~ 370 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGS-ILVL 370 (385)
T ss_pred cCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecccCc-EEEE
Confidence 334444444 5567776 6999999999999999984432 111222233356799999999999 7888
Q ss_pred EeCCCcEEEEeC
Q 015484 378 VADDNTVQVWQM 389 (406)
Q Consensus 378 ~~~dg~i~iw~~ 389 (406)
..+|+.|.-||.
T Consensus 371 vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 371 VCDDGTVWRWDR 382 (385)
T ss_pred EeCCCcEEEEEe
Confidence 888999998875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-21 Score=165.71 Aligned_cols=241 Identities=17% Similarity=0.273 Sum_probs=185.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.|++|.+++. ++||..+|.|.||+.... +.......|.+.|.+++...+|. |++|+.|..|..||
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~--------~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd 314 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTN--------RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWD 314 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCCc--------eEEeEeeecCCceEEEEEecCcc--EeecCccceEEecc
Confidence 6799999999994 889999999999999763 22444458999999999998775 77799999999999
Q ss_pred CCCccCC-----cee-----------------------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEE
Q 015484 196 VSALAQD-----KVI-----------------------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241 (406)
Q Consensus 196 ~~~~~~~-----~~~-----------------------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 241 (406)
-+-.+.. ... ..-....+|......++.+| +..++++++.|+.++
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEE
Confidence 3211000 000 00123356778888999999 678888999999999
Q ss_pred EEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE
Q 015484 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 242 i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
+|+ ..+.+.+.. -..++.|+.|+|.| .+|.|+..|...+.|..+ ...+..... ..+++.++|+|+|. +||.|
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~-~lAvg 465 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA-FLAVG 465 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC-EEEEe
Confidence 999 344433332 46788999999998 699999999999999998 332444444 88999999999997 79999
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.|+.|+||.+...+. .....-.-+..+|+.+.|+++++ ++.+-+.|-.|-.|...
T Consensus 466 s~d~~iyiy~Vs~~g~------------~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGR------------KYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWKPS 521 (626)
T ss_pred cCCCeEEEEEECCCCc------------EEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEccc
Confidence 9999999999987443 22222222348899999999999 58899999999999443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=164.04 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=177.9
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce-eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV-IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
-.+.+|+++|..++|+|.+.+.||+||.|.+|.||.+........ ..++..+.+|...|.-++|||...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999999888999999999999999976544332 3456778899999999999999999999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETV 317 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~ 317 (406)
.|.+|++.+++.+.++. |...|.+++|+.+|. +|++++.|..|+|||.|.++. +..-.+|.+ .-..+.|-.++. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-e
Confidence 99999999999988887 999999999999999 999999999999999999765 666667776 356677888886 5
Q ss_pred EEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 318 LASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 318 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.||. .+..+-+||-.+..++ .....+.. .+.|.---|.++...+.++|-.|+.|+.|.+.+..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP-----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEP-----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCc-----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55553 3788999998875543 22223332 33465566788888667777789999999998775
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=172.21 Aligned_cols=246 Identities=15% Similarity=0.272 Sum_probs=190.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.++.+.|.....-.+|+.+.|..|++|.-..... ....+..+.+. .-.|++...... ++++|+..++|+|||+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~----~Vp~~~k~~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP----EVPRVRKLTGD--NAFCVACASQSL-YEISGGQSGCVKIWDL 108 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCC----ccceeeccccc--hHHHHhhhhcce-eeeccCcCceeeehhh
Confidence 3899999886633344555677888887665311 11112222222 334555444445 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-CCCeeEEEecCCCCcEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~ 275 (406)
+.... .+.+..|...|+++.++. ...+||+++..|.|.|..+.++.....+... ...|+-+.|+|..+.+|.
T Consensus 109 ~~kl~------hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 109 RAKLI------HRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred HHHHH------hhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 85432 355678999999999996 7889999999999999999998877777533 456778999999998999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.+|.|.+||.............|..+...|+|+|..+.+|++.+.|..|.+||++... ....+
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------------s~~~l 247 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------------STDRL 247 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------------cccee
Confidence 9999999999999987766667788999999999999999999999999999999998621 11111
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-..+...++|.++|. +|+.|...|.|..||+...
T Consensus 248 -~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 -TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -eecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 1245789999999998 6999999999999999764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=154.85 Aligned_cols=229 Identities=19% Similarity=0.291 Sum_probs=171.2
Q ss_pred CCeEEEEEe-ecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 104 PKVEIAQKI-RVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 104 ~~~~~~~~~-~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
+........ .|.+.|..+.|.+ .-+.++|+++.|+++.||.-........ ..+....++......|+.|.|.|..-+
T Consensus 47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence 445555444 5999999999975 3347999999999999998864333322 245556777888899999999996433
Q ss_pred -eEEEecCCCeEEEEeCCCccCCceeeeeeeee-------ccCccEEEEEeeCC--CCCEEEEEecC-----CcEEEEEC
Q 015484 181 -YLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-------AHESVVEDVSWHLK--NENLFGSAGDD-----CQLMIWDL 245 (406)
Q Consensus 181 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~p~--~~~~l~~~~~d-----g~i~i~d~ 245 (406)
.|++++.||+++||+.-.............++ .+..+..|+.|+|. ...+||.|+.+ +.+.||.-
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 68999999999999976654333332222222 46678889999873 34677777765 47888876
Q ss_pred CCCc----ccccccccCCCeeEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC-------------------CCcEEec
Q 015484 246 RTNQ----TQQRVKAHEKEVNYLSFNPYNE---WVLATASSDTTVALFDMRKMT-------------------VPLHILS 299 (406)
Q Consensus 246 ~~~~----~~~~~~~~~~~v~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~ 299 (406)
.... .+..+..|..+|+.|+|.|+-. .+||+++.|| |+||.++... ..+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 5432 2456678999999999999632 4799999999 9999987421 1245577
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|.+.|..+.|+-.|. +|++.+.||+|++|....
T Consensus 286 ~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeee-EEeecCCCceeeehhhhh
Confidence 8999999999999995 799999999999998765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=160.65 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=167.0
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
..+++|.+.|++++|+.+|+ +|+|++.|++|++|+++.-... ..++++... .-+..+.+.|.|+...+++++-....
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENK-EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhh-hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCE
Confidence 45889999999999999999 9999999999999999863221 112222111 12356788999987888888888889
Q ss_pred EEEEECCCCcc---ccc--------c-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEE
Q 015484 240 LMIWDLRTNQT---QQR--------V-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ 307 (406)
Q Consensus 240 i~i~d~~~~~~---~~~--------~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 307 (406)
+++|-+...+. ... + ..|...+..+-....+. +|++++.|..|.+|+++ +. .+..+......-+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cc-eeeeeccccccccc
Confidence 99998754321 111 1 34556666676666666 99999999999999999 33 37777776777788
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.+.+|+|+ ++++++---.|++|.+-....-. -.....++.+.||.+.|..++|+++.. .+++.+.||+.+||
T Consensus 234 aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~------fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 234 AAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGT------FQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIW 305 (420)
T ss_pred eeeCCCCc-EEEEecCCCCceEEEEEeccCcc------hhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEe
Confidence 99999998 68888888889999875422100 011356788899999999999999998 69999999999999
Q ss_pred eCCCccc
Q 015484 388 QMTDSIY 394 (406)
Q Consensus 388 ~~~~~~~ 394 (406)
|.+-..-
T Consensus 306 dtdVrY~ 312 (420)
T KOG2096|consen 306 DTDVRYE 312 (420)
T ss_pred eccceEe
Confidence 9876543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=161.43 Aligned_cols=266 Identities=17% Similarity=0.284 Sum_probs=196.4
Q ss_pred EeecCCceeEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee--eCCCCCeeEEEecCC---CCCe
Q 015484 111 KIRVDGEVNRARCMP----QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL--KGHDKEGYGLSWSPF---KEGY 181 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~---~~~~ 181 (406)
+..|..+|..++|.+ +.+..+|+.+.+ .+.+|+...... ...+..+ ..|....+.++|+-+ +..+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~-----ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~ 107 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG-----IRLLQSYADEDHDESFYTCSWSYDSNTGNPF 107 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc-----eeeeeeccCCCCCcceEEEEEEecCCCCCee
Confidence 345889999999986 445677777654 688998876431 1112222 246778888999753 3348
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHE 258 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~ 258 (406)
+|+|+.-|.|+|.|+.+++.. ..+.+|...|+.|.++|...+++++++.|..|++|++++..++..+ .+|.
T Consensus 108 la~~G~~GvIrVid~~~~~~~------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCS------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred EEeecceeEEEEEecchhhhc------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 999999999999999987653 5567899999999999999999999999999999999999998777 7899
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------------------------Cc-EEecCCCCCeEEEEEc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------------------------PL-HILSSHTEEVFQVEWD 311 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------~~-~~~~~h~~~v~~i~~~ 311 (406)
..|.++.|++++. .+++++.|.+|++|++..... |. .+-..|...|-|+.|-
T Consensus 182 deVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999 999999999999999983210 01 1234577778888887
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE--eCCCCCcEEEEEeCCCcEEEEeC
Q 015484 312 PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS--WNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
- + ++++-+.++.|..|.....++..............+..+.-....|+-+. |.|-++ +||.|...|.|.+||+
T Consensus 261 g--d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 261 G--D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDL 336 (385)
T ss_pred h--h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEEC
Confidence 4 3 58888899999999985433332211111111223333444445566555 456677 6999999999999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
....
T Consensus 337 ~~~e 340 (385)
T KOG1034|consen 337 DNNE 340 (385)
T ss_pred CCCC
Confidence 8754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=157.35 Aligned_cols=262 Identities=16% Similarity=0.303 Sum_probs=192.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----c--------------------------C--CCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----Q--------------------------D--DCD 157 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~--------------------------~--~~~ 157 (406)
+...|.+.|.+++...+| . |++|+.|..|..||-.-....+ + + +..
T Consensus 282 ~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 344899999999999999 3 6679999999999932211111 0 0 111
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+|....+.++.+|+.+ .++|++.|+.+++|+ ..+. .+ . .....++.|+.|+|. + .+|.|+..
T Consensus 360 f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~--~w----t-~~~~d~~~~~~fhps-g-~va~Gt~~ 427 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKL--EW----T-KIIEDPAECADFHPS-G-VVAVGTAT 427 (626)
T ss_pred ceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCce--eE----E-EEecCceeEeeccCc-c-eEEEeecc
Confidence 2334567888999999999888 999999999999999 2111 11 1 123578999999994 4 88999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~ 316 (406)
|...+.|.++...+..-.. ..++++++|+|+|. +||.|+.|+.|++|-+......+.... .|..+|+.+.|+++++
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~- 504 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ- 504 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-
Confidence 9999999998655544444 88999999999999 999999999999999877665444332 3447899999999997
Q ss_pred EEEEEeCCCcEEEEeCCCCCccccc------------------------------------ccc--c-----------CC
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLE------------------------------------LDA--E-----------DG 347 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------~~~--~-----------~~ 347 (406)
+|.+-+-|-.|..|......+.... ... . ..
T Consensus 505 ~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 6999999999999943321110000 000 0 01
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+......+.+|.+-|++++|.-... .+++.+.|.+|..|++
T Consensus 585 ~rA~~he~~ghs~~vt~V~Fl~~d~-~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 585 PRAPSHEYGGHSSHVTNVAFLCKDS-HLISTGKDTSIMQWRL 625 (626)
T ss_pred CcccceeeccccceeEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence 2223344568999999999998888 5666669999999986
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=155.73 Aligned_cols=254 Identities=16% Similarity=0.324 Sum_probs=178.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-C---CCCCceeee-CCCCCeeEEEec-------CCCCCeEEEe
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-D---DCDPDLRLK-GHDKEGYGLSWS-------PFKEGYLVSG 185 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~---~~~~~~~~~-~h~~~v~~l~~~-------~~~~~~l~s~ 185 (406)
...+.|+|+| ..|++-+.|..+.+|++........ . .......++ .....|+..+|- |+.. ++++.
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~-l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN-LFAVS 129 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc-eeeec
Confidence 4567899999 5677888999999999875432221 0 011111122 234567888885 3333 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC-CCCcccccc-------ccc
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL-RTNQTQQRV-------KAH 257 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~-------~~~ 257 (406)
+.+.-|++||.-+++............ .-.+..+++|+|+ +..|+ ++....|++||+ |.|.....+ .+.
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~d-e~taAhsL~Fs~D-Geqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQD-EYTAAHSLQFSPD-GEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHH-hhhhheeEEecCC-CCeEe-ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999987544332221111 1134568999994 55554 456689999999 665432221 233
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.+.+.+++|+|....++++|+....+-||.-.. ..|+..+.+|.+.|+.++|.++|+.++..+-.|-.|..||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-
Confidence 677899999998888999999988888887665 446888999999999999999999755444468899999999844
Q ss_pred ccccccccCCCCeeEEEecCCCC-Cee--eEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKA-KIS--DFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~-~v~--~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++..+..|.. .-. -+...|.++ +|++|+.||.|++||+.+
T Consensus 285 ------------~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 ------------DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ------------chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 33444444543 222 344568888 799999999999999987
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=171.98 Aligned_cols=268 Identities=15% Similarity=0.194 Sum_probs=197.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|+.+.|+|..+ .|++++.||++.+|++++..........|+.++.+|.++|.|++..+.+. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCc
Confidence 3556889999999999885 69999999999999996644444456888999999999999999999998 999999999
Q ss_pred eEEEEeCCCccCCc----eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--cCCCeeE
Q 015484 190 KICLWDVSALAQDK----VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HEKEVNY 263 (406)
Q Consensus 190 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~ 263 (406)
+|+.|++....... .......+.+|...|+.+++++ ....|++++.||++++|+...... .++.. ..+.-.+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999776322111 1112356788999999999998 566688999999999999876555 33321 2233345
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+++-.......++...-+.-.++++..... +..+.. ....++.+.++|..+ +.+++..|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~-- 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKT-- 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccc--
Confidence 555443321222222222223333332221 222211 124578899999997 799999999999999887
Q ss_pred cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
..+++....|...++++++.|+|. .|++++.|+.+++|++....+..+-
T Consensus 521 ------------~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 521 ------------GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ------------cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeecc
Confidence 467777788999999999999999 5899999999999999877665443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=159.82 Aligned_cols=214 Identities=18% Similarity=0.306 Sum_probs=173.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|+++|..++|+|.+.+.||+|+.|.+|.||++....... ....|+..|.+|...|--++|+|.-.+.|++++.|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 348999999999999888999999999999999998765443 2346788999999999999999998889999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC-CeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~ 269 (406)
|.+|++.++... ..+. |...|.++.|+. ++.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+
T Consensus 156 v~iWnv~tgeal------i~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEAL------ITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCcee------eecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999998542 2233 999999999997 899999999999999999999998877766654 3345667777
Q ss_pred CCcEEEEEe---CCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 270 NEWVLATAS---SDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+. ++.+|. .+..+-+||..+...|+..... .++.|.-=-|.|+..-+.++|-.|+.|+-|.+..
T Consensus 228 g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 228 GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 77 555554 3678999999998887544332 2345655567888875555666899999999987
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=157.11 Aligned_cols=272 Identities=15% Similarity=0.185 Sum_probs=198.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
+...+|.+.|+++.|+.++ .+||+|+.|..++||++....... ..+|+.... .|...|.|++|...+. ++++|..
T Consensus 50 KD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCe-eEecCCC
Confidence 4466899999999999987 799999999999999987643321 234554443 3558999999998666 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeee--ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-cccc--ccccCCCee
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYE--AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQR--VKAHEKEVN 262 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--~~~~~~~v~ 262 (406)
+++|..-|+++.+.. ..+. ...+.|..+..+|. .+.|++.+.+|.|.+||.+... .... .........
T Consensus 126 ~~~VI~HDiEt~qsi------~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSI------YVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cceeEeeecccceee------eeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 999999999986432 2222 23458999999995 7888899999999999998765 2222 233456678
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE-------------------------------------EecC-----
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH-------------------------------------ILSS----- 300 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------------------~~~~----- 300 (406)
++.|+|-.+.+|++.+..+-+.+||.|....++. .+..
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 8999999998999999999999999987532200 0001
Q ss_pred ------CC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc---------cccccCCCCeeEEEecCC
Q 015484 301 ------HT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL---------ELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 301 ------h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~h 358 (406)
|. ..+.+++|..+. -+++|+.+-.|.+|.+.......- ....+......+..+.||
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH 356 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH 356 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc
Confidence 11 124455665544 389999999999999875332211 000011122345678899
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.|+|... +|++.|..+.++||.......
T Consensus 357 RSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r~P~ 391 (609)
T KOG4227|consen 357 RSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHRLPW 391 (609)
T ss_pred cccccceeecCCcc-eEeccchhhheeccccccCCc
Confidence 99999999999877 899999999999998766543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=158.60 Aligned_cols=173 Identities=19% Similarity=0.294 Sum_probs=141.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
-..+|..+.|.+...+.+|||+.|..|+||.+........ ........+..|...|+++.|+|+|. +|++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 3478999999998866899999999999999887543221 12333556788999999999999999 999999999999
Q ss_pred EEeCCCccC----------CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 193 LWDVSALAQ----------DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 193 iwd~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+|-...-.. .........+.+|...|..++|+| ++.++++++-|..+++||+..+.....+..|...+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 998762110 122334466778999999999999 788999999999999999999999999999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.++|.|.++ ++++-+.|...+.+.+.
T Consensus 170 gvawDpl~q-yv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 170 GVAWDPLNQ-YVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeecchhhh-hhhhhccCcccceeeee
Confidence 999999888 78888877766665544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=171.48 Aligned_cols=220 Identities=20% Similarity=0.334 Sum_probs=175.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...|.+++... ..|++|+.+++|.+|.+..... ...+...+-++.+++++.+|. +++.||.|-.|++
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~--------~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~ 122 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE--------DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKL 122 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCCc--------cceeeeeeccceEEEEecCCc-EEEeecCceeEEE
Confidence 777788887654 3699999999999999988432 334555667899999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc--------cCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--------HEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~i~ 265 (406)
-++...... ..+.+|.++|.++.|+| .+++||+.+.||.|++||+.++.....+.+ ....+..++
T Consensus 123 ~~~~D~s~~------~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 123 LNLDDSSQE------KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred Eeccccchh------eeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee
Confidence 998876543 55678999999999999 799999999999999999999877655521 145577899
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++. .|+....|+.|++|+.......... ...+...+..++|+|.|. +||+++.||.|.|||..+...
T Consensus 196 W~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~------- 266 (933)
T KOG1274|consen 196 WHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER------- 266 (933)
T ss_pred ecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh-------
Confidence 999988 6777778999999999887653222 223444599999999998 599999999999999986211
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
......|.+++|.|+.+
T Consensus 267 -----------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 267 -----------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred -----------ccccceeEEEecCCCCC
Confidence 11245689999999877
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=163.08 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=195.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-.+.|-.++|++.+ .|.+.+.+|.|.-||+.+ .++...+....+.|++++.+|.+. .++.|+.||.+..
T Consensus 68 ~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~--------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 68 EDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT--------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYD 136 (691)
T ss_pred CCCceeeEEEccCC--eEEeecCCceEEEEeccc--------CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEE
Confidence 44789999999766 478888999999999998 455777777889999999999888 9999999997777
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--------cccCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--------KAHEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~v~~i~ 265 (406)
++...+. +.....+...++.|.++.|+| .+..+++|+.||.|++||...+..+... +....-|.++.
T Consensus 137 ~s~~p~~----I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 137 FSIGPDK----ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred EecCCce----EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence 7766532 333455556678999999999 6777889999999999999988776522 11334577888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+-.++ .|++|...|+|.+||...+.. ++.+..|...|.+++..+++.+ +.+++.|+.|.-|.......+
T Consensus 212 ~Lrd~--tI~sgDS~G~V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~~------- 280 (691)
T KOG2048|consen 212 FLRDS--TIASGDSAGTVTFWDSIFGTL-IQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKSE------- 280 (691)
T ss_pred EeecC--cEEEecCCceEEEEcccCcch-hhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCccc-------
Confidence 87665 699999999999999998776 8888899999999999999874 889999999999888764331
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.........|...|.+++..++ .+++||.|..+.+-....
T Consensus 281 ---wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 ---WVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ---eeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 1222334567788999998887 788999999888766554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=168.19 Aligned_cols=238 Identities=18% Similarity=0.300 Sum_probs=180.1
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
+.+.||++... ..|...+. -...|+++.|+|..+++++.|..+|.|.+||++.+........-.....|..+
T Consensus 222 ~~~~vW~~~~p-------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNP-------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred ceEEEEecCCC-------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 47999999983 34455554 45789999999999889999999999999999987653222112233468899
Q ss_pred EEEEEeeCCC-CCEEEEEecCCcEEEEECCCCccccc-c-----c------ccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 218 VEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQR-V-----K------AHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 218 i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
+..+.|.... +.-|++++.||.|..|+++.-..... . . .....+++++|.+...+.+++|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 9999997521 23477899999999999875433111 1 1 22356889999999988999999999887
Q ss_pred EEeC---CCCC----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 285 LFDM---RKMT----VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 285 vwd~---~~~~----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
--+. +... .+...+..|.++|+.+.++|-+..++++++ |.+++||..... ..+++.+..
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-------------~~Pl~~~~~ 439 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-------------ASPLLSLDS 439 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-------------CCcchhhhh
Confidence 7333 2222 224466778899999999999987777777 999999997731 244555566
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+...|++++|||..+.+++++..||.|.|||+......+.
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 7778999999999998999999999999999987765543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=160.04 Aligned_cols=235 Identities=14% Similarity=0.127 Sum_probs=161.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
+++++++.|+.|++||+.+. .....+..+. .+.+++|+|++. .+ ++++.++.|++||+.+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--------~~~~~~~~~~-~~~~l~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~----- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--------EVTRTFPVGQ-RPRGITLSKDGK-LLYVCASDSDTIQVIDLATGEVI----- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--------ceEEEEECCC-CCCceEECCCCC-EEEEEECCCCeEEEEECCCCcEE-----
Confidence 57889999999999999763 2345555544 367899999988 55 67788999999999875432
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-cEEEE
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-TVALF 286 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-~i~vw 286 (406)
..+..+. .+..++|+|++..++++++.++.|++||+++.+.+..+.. ...+.+++|+|++. ++++++.++ .+.+|
T Consensus 67 -~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 67 -GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGK-IVVNTSETTNMAHFI 142 (300)
T ss_pred -EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCC-EEEEEecCCCeEEEE
Confidence 2222222 3567889995544555666789999999998776665542 34468899999999 777777665 57788
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCC--CCCee
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGH--KAKIS 363 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h--~~~v~ 363 (406)
|.++... ..... ....+..++|+|+++.+++++..++.|++||+.+....... .... ..+ .....
T Consensus 143 d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~----------~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 143 DTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI----------TFEIPGVHPEAVQPV 210 (300)
T ss_pred eCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee----------eecccccccccCCcc
Confidence 9876543 22222 23456789999999865566667999999999873211100 0000 001 11245
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 364 DFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++|+|++++++++.+.++.+.+||+.++..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 6889999996566666677899999987654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=169.08 Aligned_cols=212 Identities=19% Similarity=0.252 Sum_probs=173.8
Q ss_pred EeecCCceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~ 187 (406)
.-.|..+|.|+.|+.. +..+||+++.|.-|.|||... ...++.++.+|...|+++.|--.|. ..+++++.
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------ny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-------ccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 3469999999999862 346899999999999999987 4667889999999999999987762 27889999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---ccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i 264 (406)
|..|. |+.........+-+.......+..+.+++..| ..+++++++.|..|+|||+..++..+.|+ .|.+....+
T Consensus 570 Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 570 DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred chhhh-eehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 98764 44433211111111122222346789999999 78899999999999999999999999885 456778889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...|.|- ++|+...|.++.++|+-+++. +..+.+|...|+.+.|.++-++ |++.+.||+|.||.+..
T Consensus 648 ~lDPSgi-Y~atScsdktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDPSGI-YLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECCCcc-EEEEeecCCceEEEEeccchh-hhhhcCcchheeeeeecccchh-heeecCCceEEEEECch
Confidence 9999998 999999999999999999776 8899999999999999999986 88999999999999865
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=150.51 Aligned_cols=248 Identities=15% Similarity=0.180 Sum_probs=181.5
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+|.+.|+++.|..++ .|.+|...|.|.+|.+++. .+...+. .|...|+.+.--|++ .|.+-+.|+.+
T Consensus 12 p~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L 79 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLL 79 (323)
T ss_pred cccchheehhhccch--hhhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCc--chhhcCCCceE
Confidence 899999999999887 3889999999999999984 3344555 567889999888864 58899999999
Q ss_pred EEEeCCCccCCc---------------------eeeee--------------------ee------eeccCccEEEEEee
Q 015484 192 CLWDVSALAQDK---------------------VIDAM--------------------HV------YEAHESVVEDVSWH 224 (406)
Q Consensus 192 ~iwd~~~~~~~~---------------------~~~~~--------------------~~------~~~~~~~i~~i~~~ 224 (406)
.+|++.-..... ....+ +. -.+..+.+.+..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 999987521100 00000 00 00112334444432
Q ss_pred CCC--CCEEEEEecCCcEEEEECCCCc----------ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 225 LKN--ENLFGSAGDDCQLMIWDLRTNQ----------TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 225 p~~--~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
-.. .-++++|.++|.+.+||+.++. .......|..+|.++.+.+.-. .=++|+.+..+..|.+....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHST 238 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeecccc
Confidence 212 2356778899999999999873 3334467899999999987544 34667777788899886432
Q ss_pred --CCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 293 --VPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 293 --~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.++ .........|..+..-|+++ ++||++.|+.|+||..++ ...+..+.-|.+.|.+++|+|
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt--------------l~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT--------------LNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred CcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc--------------CCchhhhhhhhcceeEEEeCC
Confidence 211 12223345688999999997 899999999999999998 455666778999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeC
Q 015484 370 NDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.+ ++|+++.|+.|.+|++
T Consensus 304 d~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCc-hhhhccCCceEEeeec
Confidence 987 8999999999999986
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=162.98 Aligned_cols=261 Identities=16% Similarity=0.259 Sum_probs=201.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|.+.|..+.|.|.| .+|++.+.|-+-|||-.-..+ ..+..+..-+-|....+|+++-+..- .+++|.....
T Consensus 357 iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q----~~wHEiaRPQiHGyDl~c~~~vn~~~-~FVSgAdEKV 430 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQ----QEWHEIARPQIHGYDLTCLSFVNEDL-QFVSGADEKV 430 (764)
T ss_pred cccccccceeeeecCCC-CEEEEeccccceeeecccccc----cceeeecccccccccceeeehccCCc-eeeeccccee
Confidence 34799999999999999 578888999999998766211 12444555567888999999988544 7999999999
Q ss_pred EEEEeCCCc-------------------------------------------cC--------------------------
Q 015484 191 ICLWDVSAL-------------------------------------------AQ-------------------------- 201 (406)
Q Consensus 191 i~iwd~~~~-------------------------------------------~~-------------------------- 201 (406)
+|+|+.... ..
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 999986531 00
Q ss_pred -CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 202 -DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 202 -~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
...++..+++-+|...|.+++.+| +++++|+++.. ..|++|+..+-..++.+..|.-.|+.++|+|++. +|+
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-~LL 588 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-YLL 588 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-EEE
Confidence 000011244567899999999999 78999998754 3599999998888888999999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 276 TASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
+.+.|+++.+|........ ....+.|+.-|.++.|+|++.+ ++|+|.|.+|++|......... ...
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~----------i~~ 657 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKY----------ISR 657 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhh----------hhh
Confidence 9999999999988654332 3347789999999999999975 9999999999999987632100 011
Q ss_pred EEecCCCCCeeeEEeCCC----CCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKN----DPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~----~~~~l~s~~~dg~i~iw~~~ 390 (406)
+....+...|+.++|.|- ..++++.|-+.|.|.+|...
T Consensus 658 ~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 122346778999999773 22488999999999999966
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=162.07 Aligned_cols=243 Identities=15% Similarity=0.259 Sum_probs=181.5
Q ss_pred EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeee
Q 015484 134 KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYE 212 (406)
Q Consensus 134 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~ 212 (406)
.+..|.|.||++......+.+.. -.+ .....|+.+.|.|.+...|+.++.||.|++|.+..+... ....+...+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~---p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVM---PGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccc---ccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence 34578999999998654432111 111 245679999999988879999999999999999875443 2344556778
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.|...|+++.|+|-..++|++++.|-+|++||+++++....+.+|.+.|..++|+|+|+ .+|+.+.||+|++|..|+..
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCC
Confidence 89999999999998899999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred CCcEEecCCC-CCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 293 VPLHILSSHT-EEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 293 ~~~~~~~~h~-~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.++..-.+.. ..-..|.|.-+|+.++++|-. ...|.+||....... +.....+.... .+.--.+.
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~----------pl~t~~lDvap-s~LvP~YD 822 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR----------PLYTQVLDVAP-SPLVPHYD 822 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC----------cceeeeecccC-cccccccc
Confidence 8877655433 244678888899865555532 356888887653210 11111111100 11112345
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 369 KNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++...++++|-.|..|.+|.+-..
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCC
Confidence 566668899999999999987543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=138.84 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=174.7
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.|.+-+++|.+ .+|++|..+|+|.++.+........ ....++...++|.++|+.++|. +. +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DD-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hh-heeecc-CceEEEe
Confidence 46667889988 6899999999999999876432211 2334456668999999999998 34 788876 5999999
Q ss_pred eCCCccCCceee-------eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 195 DVSALAQDKVID-------AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 195 d~~~~~~~~~~~-------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
..+........+ +.+.-...--.|+++-..|..+.+|.+| .|+.++.||+++|+....+++|+..|.++.-.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 876543311111 1111111223588899999777776555 79999999999999999999999999999884
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---------CC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSS---------HT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
.... .+++|+.||++++||.++.+. +..+.. |- ..|.+++-+. . .|++|+ ...+.+|.++...
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCGg-Gp~lslwhLrsse- 238 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCGG-GPKLSLWHLRSSE- 238 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--c-eEEecC-CCceeEEeccCCC-
Confidence 4344 599999999999999999765 444332 22 2355665443 3 355444 6689999999843
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...++.+.+ .|..+.|..+ .+++++..+.|.-|.++.-
T Consensus 239 -----------~t~vfpipa---~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 239 -----------STCVFPIPA---RVHLVDFVDD---CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -----------ceEEEeccc---ceeEeeeecc---eEEEeccccceeeeeeccE
Confidence 345555554 4777788766 6778888888998887654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=146.05 Aligned_cols=199 Identities=13% Similarity=0.261 Sum_probs=156.0
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..|+.|++.|. +||.|+.||.|.|||+.+... .+.+.+|..+|.+++|++ +++.|++++.|..|.+||+..|
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI------ARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch------hhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCC
Confidence 78999999999 999999999999999988653 355678999999999999 7888899999999999999999
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---CCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS---HTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
.+++.+. ..++|....|+|...+.+++.-.+..-.+.++..+...+..... -...-.+..|.+.|+ ++++|...|
T Consensus 98 s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKG 175 (405)
T KOG1273|consen 98 SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKG 175 (405)
T ss_pred CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcc
Confidence 9888886 68899999999987766666666666666666643221111111 011223346889997 599999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+.++|..+ .+++..++-.. ..|..+.++..|+ +|+.-+.|..||.|++.+-
T Consensus 176 kllv~~a~t--------------~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 176 KLLVYDAET--------------LECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred eEEEEecch--------------heeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence 999999987 34444444333 6789999999999 6778888999999998743
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=159.24 Aligned_cols=262 Identities=20% Similarity=0.240 Sum_probs=206.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.-+. |-| ..++++..++.+.||+........ ......++...+.|+++.--+.--+.++.|+.+
T Consensus 108 ~~~~~~~a~v~~l~--~fG-e~lia~d~~~~l~vw~~s~~~~e~---~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~ 181 (910)
T KOG1539|consen 108 HTTLLHGAKVHLLL--PFG-EHLIAVDISNILFVWKTSSIQEEL---YLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQ 181 (910)
T ss_pred EEeccccceEEEEe--eec-ceEEEEEccCcEEEEEeccccccc---cccceeeeccCCceeeEecchhheeeEEEeecC
Confidence 33445666666654 445 357777889999999998842110 111222333333488875433333479999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.+.+|++++++. +..++++...|+++.-+| -=..++.|..+|.|.+++++.++.+.+++...+.|++++|..
T Consensus 182 G~lql~Nvrt~K~------v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt 254 (910)
T KOG1539|consen 182 GRLQLWNVRTGKV------VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT 254 (910)
T ss_pred CcEEEEEeccCcE------EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc
Confidence 9999999998753 577888889999999888 578899999999999999999999999985569999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|+.++++|+..|.+.+||+...+........|.+.|..+.|.|..+ ++++++.|+.+++|=..+ .++.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~----------~dg~ 323 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDS----------GDGV 323 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeC----------CCCc
Confidence 99989999999999999999986654455568999999999999887 799999999999997764 3455
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++++....||..+..+++|.....+.+.+++.|++++.+.+.....
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 7889999999999999999844334789999999999988765544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=144.77 Aligned_cols=198 Identities=17% Similarity=0.284 Sum_probs=149.9
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
.+++|+.+|. .|++|+.||++|+|+...... +.....|.+.|.++.|+| ++.+|++.+.| ..++|+++++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t------~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT------ILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh------hhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc
Confidence 6899999988 999999999999999765432 234456889999999999 78999999999 89999999997
Q ss_pred cccccc--ccCCCeeEEEecCCC---CcEEEE-EeCCCcEEEEeCCCCCC----CcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 250 TQQRVK--AHEKEVNYLSFNPYN---EWVLAT-ASSDTTVALFDMRKMTV----PLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 250 ~~~~~~--~~~~~v~~i~~~~~~---~~~l~~-~~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
.+.... ........+.|+.++ ..++++ ...-+.|+.||+..... +..........|++++.+++|+ +++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~A 297 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLA 297 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEE
Confidence 666553 223345566776655 222333 23345677777654332 2333333345799999999997 799
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.|+.||.|.|++..... .+.+....|...|+.+.|+|+.++ +++.+.|...++..+.-
T Consensus 298 lGT~dGsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 99999999999998732 445566789999999999999995 77888899998888765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=156.36 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=168.2
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~d 237 (406)
...+.||++.|.|++|+.+|. +|++||.|-.+.|||.-..+... ..-.+|...|.++.|-|. ++.++++|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh-----sI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH-----SISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceee-----eeecccccceeEEeeeccCCCeEEEeccCc
Confidence 456899999999999999999 99999999999999987543221 233579999999999984 46678899999
Q ss_pred CcEEEEECCCC----------cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe---------
Q 015484 238 CQLMIWDLRTN----------QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--------- 298 (406)
Q Consensus 238 g~i~i~d~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------- 298 (406)
..|+++|+... .....+..|...|..|+-.|.+++.+.+++.||+|+-+|+|.....-...
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999999842 22344577889999999999998899999999999999999754221111
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-CCC---eeE-EEecCCC-----------CCe
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-GPP---ELL-FSHGGHK-----------AKI 362 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---~~~-~~~~~h~-----------~~v 362 (406)
...--...++..+|..+++|+.|+.|--.++||.+..-+......... .++ .++ +...+|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 112235678999999999999999999999999655433322222211 111 011 1112222 125
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+-+.|+|+|.-+|++-+.+ .|+++++..+.
T Consensus 277 t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~ 306 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGE-HVYLFDVNEDK 306 (758)
T ss_pred EEEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence 6788999998778777644 69999998763
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-18 Score=139.07 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=167.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
...+|+|.+|++++ ..+|++.....|.||...... .+.+.+++..|...|++|+|+|..+ .|++++.|..-.+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccc
Confidence 35789999999999 579999999999999988742 2777899999999999999999887 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----ccccccCCCeeEEEecCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~ 269 (406)
|....+. ..++.-.+..+...++++.|+| ..+.||+|+.-..|.+|=.+..+.- ..-+.+.+.|++++|+|+
T Consensus 82 w~~~~~~---~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 82 WTQPSGG---TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cccCCCC---eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 9985432 2334444556888999999999 7889999999999999987765432 122456788999999999
Q ss_pred CCcEEEEEeCCCcEEEEeC-----CCCC--------CC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 270 NEWVLATASSDTTVALFDM-----RKMT--------VP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~-----~~~~--------~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
+- +|++|+.|+..+||.. .... .| +..+....+.|..+.|+|.|. .|+-.+.|+++.+-|.
T Consensus 158 nV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 158 NV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDA 235 (361)
T ss_pred cc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeec
Confidence 98 9999999999999853 1111 11 233335567899999999998 5888999999999988
Q ss_pred CC
Q 015484 333 NR 334 (406)
Q Consensus 333 ~~ 334 (406)
..
T Consensus 236 ~~ 237 (361)
T KOG1523|consen 236 AG 237 (361)
T ss_pred CC
Confidence 76
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-16 Score=142.78 Aligned_cols=264 Identities=12% Similarity=0.152 Sum_probs=166.5
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
++...+.+.+.+....++++|+++.+++++..++.|.+|++.... ......... .......++++|+++ +|++
T Consensus 24 ~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-----~l~~~~~~~-~~~~p~~i~~~~~g~-~l~v 96 (330)
T PRK11028 24 ALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-----ALTFAAESP-LPGSPTHISTDHQGR-FLFS 96 (330)
T ss_pred ceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-----ceEEeeeec-CCCCceEEEECCCCC-EEEE
Confidence 455666777778899999999996545555568889999997311 111111111 223456899999998 6666
Q ss_pred ec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-----cc-cc
Q 015484 185 GS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-----VK-AH 257 (406)
Q Consensus 185 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~-~~ 257 (406)
++ .++.|.+|++++..... ....... +......++++|++..++++...++.|.+||+.+...+.. .. ..
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 55 48999999997432111 1112221 2234677889995555556666789999999986432211 11 12
Q ss_pred CCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCC---CcEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 258 EKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTV---PLHILSS------HTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
......+.|+|+++ +++++. .++.|.+||+..... .+..+.. +......+.++|++++++++...++.|
T Consensus 174 g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 174 GAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 34467899999999 555555 488999999974211 1222221 112344689999998644444558899
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+|++...+.. ..++..... ......+.++|+|++++++...++.|.+|+++
T Consensus 253 ~v~~i~~~~~~----------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 253 SVFSVSEDGSV----------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEeCCCCe----------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999653211 112222111 12456789999999766666669999999875
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=145.06 Aligned_cols=195 Identities=18% Similarity=0.316 Sum_probs=153.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc--ccc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV--KAH 257 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~ 257 (406)
.+|++-..|.|++||..+++. +..++++...++.+.|... .++.+.+++.||.|++||+|.......+ ..+
T Consensus 42 ~vav~lSngsv~lyd~~tg~~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQL------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eEEEEecCCeEEEEeccchhh------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 788898999999999988643 3667788888899998753 6788999999999999999987665554 333
Q ss_pred C-CCeeEEEecCCCCcEEEEEeC----CCcEEEEeCCCCCCCcE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 258 E-KEVNYLSFNPYNEWVLATASS----DTTVALFDMRKMTVPLH-ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 258 ~-~~v~~i~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~-~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
. .+..+++.+-.+. ++++|+. +-.|.+||+|+..+++. ....|...|++++|+|..+.+|++|+.||.|.|||
T Consensus 116 ~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 3 4667777765666 7888764 55899999999877544 45689999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+....++ ..++.. -.|...|..+.|..++-..|.+-+..+...+|+++.+.
T Consensus 195 ~~~d~Ee----------DaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 195 TKKDNEE----------DALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cCCCcch----------hhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 9874221 122323 34677799999998873247777889999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=151.19 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=179.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|+.++|-|+|..+++.+ +..+.|||..++ ....++++|.+.|++++|+.+|+ .+++|+.|..|.+|.-
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCc--------ccccccccccceEEEEEEccCCc-eeccCCCceeEEEecc
Confidence 799999999997655544 446999999984 33778999999999999999999 9999999999999986
Q ss_pred CCccCC-----ceeeeee------------------------eeecc--CccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 197 SALAQD-----KVIDAMH------------------------VYEAH--ESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 197 ~~~~~~-----~~~~~~~------------------------~~~~~--~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.-.... ..++++. ....| ...+.+++|.. ++.+|+.|-.+|+|.+-+-
T Consensus 83 klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 83 KLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred cccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecC
Confidence 532110 1111110 00111 24567777875 7889999999999998763
Q ss_pred CCCcccccc---cccCCCeeEEEecCCCC----cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 246 RTNQTQQRV---KAHEKEVNYLSFNPYNE----WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 246 ~~~~~~~~~---~~~~~~v~~i~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
+++....+ .+.+++|.+++|+|... ..+++.....++.+|.+.... +..-..-.-...|+.+.|+|++ +
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--Igk~r~L~FdP~CisYf~NGEy-~ 237 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--IGKDRALNFDPCCISYFTNGEY-I 237 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee--ecccccCCCCchhheeccCCcE-E
Confidence 34443333 44788999999999632 368888888888888776421 2222222334678999999985 7
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.|+.|+.+.+|--.. ..+-+.......|+.++..|+++ .++.|+.||+|..|++...
T Consensus 238 LiGGsdk~L~~fTR~G---------------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDG---------------VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEccCCCceEEEeecC---------------eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHh
Confidence 7888899999997553 45555556678999999999999 5889999999999987654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=158.00 Aligned_cols=282 Identities=14% Similarity=0.175 Sum_probs=190.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.+.....|+..|..++.++....++++|+.||+|++|+........ +..+...++..-...+.++...+.+. .+|.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGD-QFAVST 1117 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCC-eEEEEc
Confidence 3455667999999999998776799999999999999998754332 22333445554567899999998888 999999
Q ss_pred CCCeEEEEeCCCccCCc-eeeeeeeeec--cCccEEEEEeeCCCCC-EEEEEecCCcEEEEECCCCcccccc--cccCCC
Q 015484 187 HDNKICLWDVSALAQDK-VIDAMHVYEA--HESVVEDVSWHLKNEN-LFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKE 260 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~--~~~~i~~i~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~ 260 (406)
.||.|++.+++.....+ ...+...... ....|..-+|...... .++.+..-+.|..||++......++ ....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99999999998732211 1111111111 1223333344433344 7888889999999999987765555 334678
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC--CEEEEEe--CCCcEEEEeCCCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--TVLASSA--DDRRLMVWDLNRIG 336 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~ 336 (406)
|++++.+|.+. .+++|+..|.+.+||+|-.........++..++..+..+|..+ ...++++ ..+.|.+|++.++.
T Consensus 1198 vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99999999998 8999999999999999975543344456678899998888655 3444444 57889999998864
Q ss_pred cccccccccCCCCeeEEEec------CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 337 DEQLELDAEDGPPELLFSHG------GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
... .....++.+.+..... .+.-......+...+. ++.+|+.|..|+.||.....
T Consensus 1277 ~~~-vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQT-VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceE-EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcc
Confidence 322 2222222122211111 1111222233333344 78899999999999998654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-16 Score=147.16 Aligned_cols=254 Identities=24% Similarity=0.430 Sum_probs=194.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEe-cCCCCCeEEEecC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSW-SPFKEGYLVSGSH 187 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~~~ 187 (406)
....|...+.++.+.+.+ ..++.++.++.+.+|+..... .....+..+. ..+..+.+ ++++...++..+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCC
Confidence 456799999999999998 567778889999999998842 1244455533 36777777 6666524444344
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
|+.+.+|++... ......+..|...|..++|+| ++..+++++. |+.+++|++..+..+..+..|...|.+++
T Consensus 132 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 132 LDGTVKLWDLSTP-----GKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred CCccEEEEEecCC-----CeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEE
Confidence 999999999861 122355677899999999999 4557777775 99999999999888888888999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLH-ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++..++++++.|+.|++||.+.... +. .+..|...+ -..|+|++. ++++++.|+.+++|++.....
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~------- 275 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS------- 275 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc-------
Confidence 9998874455558999999999885443 44 577787775 448999994 688999999999999986322
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+....+|...|.++.|+|++. .+++++.|+.+++|+......
T Consensus 276 ------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 276 ------LLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ------EEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce
Confidence 1222267888999999999877 456688889999998877653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-17 Score=149.98 Aligned_cols=263 Identities=14% Similarity=0.202 Sum_probs=185.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.-.+++.+++|.+ +++|+|..||.|.+|.--.... .......+.-|..+|.+++|+++|. +|++|+..|.+.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~----~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv 276 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD----DSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLV 276 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEecccccc----ccccceEEEecccccceeEEecCCc-eEeecccceEEE
Confidence 466678999999999 7999999999999997554111 1233566778999999999999999 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-----------cCCCe
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-----------HEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v 261 (406)
+|.+.+++. +.+..-.++|..+.++| ++.+.+....|..|.+....+.....++.+ ..+-.
T Consensus 277 ~Wq~~T~~k-------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 277 LWQLETGKK-------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred EEeecCCCc-------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 999998762 22344578999999998 677788888899999988755444333311 23345
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------- 294 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------- 294 (406)
+.++++|.-+ .++-.+..|.|.+||+-+....
T Consensus 349 t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 6677777443 5666666777777776542210
Q ss_pred --------------------cEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 295 --------------------LHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 295 --------------------~~~~~~h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
-.....|...+...++.+..+. .+++++.||.++||-+......... .....+..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~----~s~W~c~~ 503 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK----SSNWTCKA 503 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC----ccceEEee
Confidence 1112345555555555443333 6889999999999998653322211 11234444
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC-cccCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD-SIYRD 396 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~-~~~~~ 396 (406)
...-|..+++.++|+.+|. +++++.|+.|.+||..+ ..++.
T Consensus 504 i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLC 545 (792)
T ss_pred eeccccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhc
Confidence 4445889999999999997 44567799999999998 44433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-18 Score=158.79 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=179.3
Q ss_pred CCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCcc-cccc--CCCCCce-eeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 115 DGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQA-EKQQ--DDCDPDL-RLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 115 ~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~-~~~~--~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...|+.+.+-. ++..++++|+.||.|+||+--... ..++ ..+..+. .+.+..+.-.-++|..... +|++++.-.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCee
Confidence 35677777765 344689999999999999865432 1110 0111111 1111222234578988766 777777788
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCC--eeEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKE--VNYL 264 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--v~~i 264 (406)
.|+|||.........+ ..+....|+++.-+-..++++++|..||.|++||.|.... +...+.|+.. |..+
T Consensus 1188 ~IRIWDa~~E~~~~di-----P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADI-----PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred EEEEEecccceeEeec-----ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 9999999875432222 1224556777776655789999999999999999987543 4445667766 9999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCCC--C-CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKM-TVPLHILSSHT--E-EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~--~-~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
.+.+.|-..|++|+.+|.|++||+|.. ......+..|. + .++++..+++.+ ++|+|+. +.|+||++......
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~-- 1338 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLN-- 1338 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhc--
Confidence 999877656999999999999999983 22223333333 3 599999999997 6888887 99999998752211
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..... +..+ ......+.+++|+|... ++|+|+.|..|.||....+.
T Consensus 1339 ~~k~n---~~F~---~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1339 IIKYN---PGFM---GQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccC---cccc---cCcCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 11000 1111 11234579999999887 79999999999999887654
|
|
| >PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-20 Score=125.58 Aligned_cols=71 Identities=41% Similarity=0.788 Sum_probs=54.1
Q ss_pred hHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCC-CCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCC
Q 015484 14 EEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPP-QPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLP 86 (406)
Q Consensus 14 ~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~ 86 (406)
+|+|++||+|+|++||+++++.++||||+|||+|+.. .. . +..+..+++++||++.++.+|+|+|+++++|
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~-~-~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p 72 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGD-N-RNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP 72 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE---T-T-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCccccc-C-CCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence 6899999999999999999999999999999999988 44 3 2346789999999999889999999999977
|
1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-16 Score=123.68 Aligned_cols=247 Identities=15% Similarity=0.188 Sum_probs=170.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CC-----CCCeeEEEecC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GH-----DKEGYGLSWSP 176 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~~~ 176 (406)
++..++..-.|.++|+.++|.. .+|++|+ ||.|+=|......+.. ..++...++ -| --.|+++...|
T Consensus 51 gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~--~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 51 GKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESL--ATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhc--cchhhhhhcCccccCcccCCccceeEecc
Confidence 5566676788999999999993 4566665 5999999887654421 111111111 12 24688999998
Q ss_pred CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
..+ -++.++.|+.+.-||+++++.. ..+++|...|.+++--. ....+++|+.||++|+||+++++.+..+..
T Consensus 125 ~en-Si~~AgGD~~~y~~dlE~G~i~------r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 125 SEN-SILFAGGDGVIYQVDLEDGRIQ------REYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred CCC-cEEEecCCeEEEEEEecCCEEE------EEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEecc
Confidence 777 5555558999999999998543 67789999999998744 345566999999999999999998777632
Q ss_pred c----------CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 257 H----------EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 257 ~----------~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
. ...|.+++-+ .. .+++|+ ...+.+|.+|..+. ...+. -..++..+.|..+ .++++++.+.
T Consensus 197 yk~~~~lRp~~g~wigala~~--ed-WlvCGg-Gp~lslwhLrsse~-t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~ 267 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVN--ED-WLVCGG-GPKLSLWHLRSSES-TCVFP-IPARVHLVDFVDD---CVLIGGEGNH 267 (325)
T ss_pred ccChhhcCcccCceeEEEecc--Cc-eEEecC-CCceeEEeccCCCc-eEEEe-cccceeEeeeecc---eEEEeccccc
Confidence 1 2335555554 34 566555 45899999998664 55544 3677888888754 4778888889
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|.-|.+.. .+...........++..|+..--.++..++..+.+.|+.
T Consensus 268 v~~~~l~G---------------vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 268 VQSYTLNG---------------VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeeecc---------------EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 99998875 333333333334566666543323666677777777763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-15 Score=143.09 Aligned_cols=247 Identities=28% Similarity=0.475 Sum_probs=187.5
Q ss_pred CceeEEEE-cCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEE
Q 015484 116 GEVNRARC-MPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKIC 192 (406)
Q Consensus 116 ~~v~~i~~-~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~ 192 (406)
..+..+.+ .+++..+++..+. ++.+.+|+... .......+..|...|.+++|+|++. .+++++. |+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 181 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST-------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIK 181 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC-------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceE
Confidence 37888888 7777534555444 99999999986 1233667889999999999999998 8888885 99999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~ 271 (406)
+|++.... ....+..|...|.+++|+|.+..++++++.|+.|++||...+.... .+..|.... ...|+|++.
T Consensus 182 ~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 182 LWDLRTGK------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred EEEcCCCc------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC
Confidence 99998732 2345556899999999998444366566999999999988777666 577777665 348999986
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++++.|+.+++|+++.....+..+..|...|.++.|+|++.. +++++.|+.+.+||..... .
T Consensus 255 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~--------------~ 318 (466)
T COG2319 255 -LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGK--------------L 318 (466)
T ss_pred -EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCc--------------e
Confidence 88899999999999999766534444678899999999997764 6668888999999887622 1
Q ss_pred EEE--ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 352 LFS--HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 352 ~~~--~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
... ...|...+..+.|.+++..++.++..|+.+.+|++....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 122 236777899999943324344444688999999998876
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-17 Score=140.11 Aligned_cols=205 Identities=12% Similarity=0.207 Sum_probs=159.0
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.+.|++|.|+|..+ .|++|+.||++++|.++..... .++.+.-...+|.+.+|+|++...+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNP----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccCh----hheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 46899999999888 9999999999999999764332 234444457899999999966658889999999999999
Q ss_pred CCCcccc--ccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 246 RTNQTQQ--RVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 246 ~~~~~~~--~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
.+.+..+ ...++ ...+..+..+|+++ +|+..+..|.|.+....++.. +..++. .+.|..++|+.+++ .|++++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~Ki-eG~v~~~~fsSdsk-~l~~~~ 363 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSFKI-EGVVSDFTFSSDSK-ELLASG 363 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hheeee-ccEEeeEEEecCCc-EEEEEc
Confidence 8876532 22333 34677888999999 999999999999998887654 555553 68899999999997 577777
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+|.|.+||++.. .++..+.. .+ .-++++.++++. +||+|+..|.|.|||..+-...
T Consensus 364 ~~GeV~v~nl~~~--------------~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN--------------SCLHRFVD-DGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred CCceEEEEecCCc--------------ceEEEEee-cCccceeeeeecCCCc-eEEeccCcceEEEeccchhhcc
Confidence 7999999999983 33333221 12 235677789999 5999999999999997766543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=149.32 Aligned_cols=217 Identities=19% Similarity=0.306 Sum_probs=163.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCC-CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPF-KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~-~~~~l~s~~~d 188 (406)
..+|+|.|+|+.|+.+| .+|++|+.|-.+.|||.-.. ++.+. -.+|...|.++.|-|. +..++++|..|
T Consensus 46 L~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hccccceecceeecCCC-CEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 45899999999999999 79999999999999999863 33443 3589999999999995 33389999999
Q ss_pred CeEEEEeCCCccCC----ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----------ccc
Q 015484 189 NKICLWDVSALAQD----KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----------QRV 254 (406)
Q Consensus 189 g~i~iwd~~~~~~~----~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~ 254 (406)
..|+++|+...+.. ........+..|...|..|+-.|.+++.|.+++.||+|+-+|+|..... ..+
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999999863321 1223345567788899999999988899999999999999999974321 111
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------cEEe-cCCC-----------CCe
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-----------------LHIL-SSHT-----------EEV 305 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~-~~h~-----------~~v 305 (406)
....-...++..+|..+++|++|+.|-..++||.|....+ +..+ .+|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 2223456789999999999999999999999996532211 1111 1121 125
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+-+.|+|+|..+|++-+.+ .|+++|+.....
T Consensus 277 t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 6678999998777776644 799999987443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=147.69 Aligned_cols=210 Identities=15% Similarity=0.229 Sum_probs=162.7
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..++.++.||.+.|.+-.. +.......|.+.+.+-.|+|+|. -|+++++||.|++|.-...-.
T Consensus 76 d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLR------- 138 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLR------- 138 (737)
T ss_pred ceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHH-------
Confidence 5688889999999887654 33456778999999999999999 888999999999998543211
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
.++.....+|.|++|.|+..+++.+.+ +.+.|=.+.....+-..++|.+-|.+++|++..+ ++++|+.|-..++||-
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDA 215 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecc
Confidence 223345678999999998777776554 5677666666666667789999999999999988 9999999999999997
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.. .++..-..|..+|++++|+|+. +++.++.. +++ ++ ....+.|..++||
T Consensus 216 ~G--~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~----------------------~p~~GSifnlsWS 265 (737)
T KOG1524|consen 216 QG--ANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS----------------------SPRVGSIFNLSWS 265 (737)
T ss_pred cC--cccccCChhccceeeeeecccc--ceeeeeee-eee---ec----------------------CCCccceEEEEEc
Confidence 63 4477778899999999999993 46666532 343 11 1235679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeC
Q 015484 369 KNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+||. .+++|...|.+.+=-+
T Consensus 266 ~DGT-Q~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 266 ADGT-QATCGTSTGQLIVAYA 285 (737)
T ss_pred CCCc-eeeccccCceEEEeee
Confidence 9999 5888887887655433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=150.10 Aligned_cols=210 Identities=20% Similarity=0.371 Sum_probs=165.5
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee--------------------------------
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID-------------------------------- 206 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------- 206 (406)
...+.+|++.|.+|...|.|. .|++|+.||+|+||.+.++.+.+.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 456789999999999999888 99999999999999998864321110
Q ss_pred -----------------------------------------eeeeeeccCccEEEEEeeCCCCCEEEEEec---CCcEEE
Q 015484 207 -----------------------------------------AMHVYEAHESVVEDVSWHLKNENLFGSAGD---DCQLMI 242 (406)
Q Consensus 207 -----------------------------------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---dg~i~i 242 (406)
.+.....|...|..+.||. .+.+|++..- ...|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEE
Confidence 0112234566788888886 6778877654 346888
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
+++........|....+.|.++.|+|... +|++++. ..|++||+.... .+..+......|..++.+|.|.+ |+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDn-li~gs 626 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDN-LILGS 626 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCe-EEEec
Confidence 88877776666766778899999999998 6666664 579999998743 35666666778999999999987 78899
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.|+.+..+|+.... .....+.-|...|++|+|++.-+ ++++|+.||.+.|+-
T Consensus 627 ~d~k~~WfDldlss-------------kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSS-------------KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeeEEEEcccCc-------------chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 99999999998633 34445567899999999999999 899999999999884
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-16 Score=151.94 Aligned_cols=256 Identities=16% Similarity=0.262 Sum_probs=177.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEEecC-CCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLSWSP-FKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~l~s~~~dg~i~ 192 (406)
+...+.|+|-.+ .++++...-.|+|||.+.... ...+.. ....|+.+.+-. ++..++++|+.||.|+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~--------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRL--------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCce--------eccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 466788999885 577777667899999988432 222222 235688888754 3344899999999999
Q ss_pred EEeCCCcc--CCceeeeeeeeecc----CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEE
Q 015484 193 LWDVSALA--QDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLS 265 (406)
Q Consensus 193 iwd~~~~~--~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~ 265 (406)
||+--... ..+.+.....+.++ .+.=.-+.|.-+.+.++ ++|.-..|+|||......+..+ .+....|+++.
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 99754332 21222111111111 11112346775455555 5555789999999887777666 33456778877
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTV--PLHILSSHTEE--VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
-+-.+.+++++|..||.|++||.|.... ++.....|... |..+.+.+.|-.-|++|+.||.|++||++....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---- 1291 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---- 1291 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc----
Confidence 6655544999999999999999997654 67778888887 999999997754599999999999999997311
Q ss_pred ccccCCCCeeEEEecCC---CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 342 LDAEDGPPELLFSHGGH---KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
+.......| .+.++++..+++.+ ++|+|+. +.|+||++....+..
T Consensus 1292 --------e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1292 --------ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred --------cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcc
Confidence 111112222 22589999999999 8999987 999999999876543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=131.04 Aligned_cols=244 Identities=17% Similarity=0.221 Sum_probs=176.9
Q ss_pred CCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeec
Q 015484 35 PLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRV 114 (406)
Q Consensus 35 ~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 114 (406)
.+.-|.++-.|.++. ..+.++.++ +++.|.+..-. . .--.....-.|
T Consensus 8 ~~~~pitchAwn~dr------------t~iAv~~~~-----~evhiy~~~~~----~------------~w~~~htls~H 54 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDR------------TQIAVSPNN-----HEVHIYSMLGA----D------------LWEPAHTLSEH 54 (361)
T ss_pred eccCceeeeeecCCC------------ceEEeccCC-----ceEEEEEecCC----C------------Cceeceehhhh
Confidence 345588888896642 244454442 67777765521 1 01122334469
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...|+.|.|.|.. +.|++|+.|..-+||....+ +.++|...+..++..++++.|+|.+. .|++|+.-..|.||
T Consensus 55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~-----~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVc 127 (361)
T KOG1523|consen 55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSG-----GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVC 127 (361)
T ss_pred CcceeEEeecCCC-CceeEccCCCCccccccCCC-----CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEE
Confidence 9999999999988 46999999999999999543 46888999999999999999999887 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-----C-------------Ccccccccc
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-----T-------------NQTQQRVKA 256 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-----~-------------~~~~~~~~~ 256 (406)
-++..+.-.. ..+.-+.+.+.|+++.|+| ++-++++|+.|+..+++..- . |..+..+..
T Consensus 128 y~E~ENdWWV--sKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 128 YYEQENDWWV--SKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEecccceeh--hhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 8876543111 1122334678899999999 78999999999999998642 1 111222334
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
..+.+..+.|+|.|. .|+-.+.|+.+.+-|.....+.+.......-+..++.|-.+.. ++.++.|
T Consensus 205 ~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~--vv~ag~~ 269 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS--VVAAGYD 269 (361)
T ss_pred CCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc--eeecCCC
Confidence 567899999999999 8888899999999998876543444444446778888866543 4455555
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=140.34 Aligned_cols=175 Identities=18% Similarity=0.292 Sum_probs=142.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
.+.+.+|.+.|.++.|+.+++ +|++|+.|-.+++|++...-..+..+++.... .|.+.|.|++|.. ++..+.+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCc
Confidence 445778999999999999988 99999999999999987643333334444433 3558999999997 78888999999
Q ss_pred CcEEEEECCCCccccccc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCC
Q 015484 238 CQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPN 313 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~ 313 (406)
++|.+.|+.+.+.+..+. ...+.|+.+..+|..+ .|++.+.++.|.+||.|....++..+ .........+.|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999988876663 3456899999999966 99999999999999999866444333 233456788999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 015484 314 HETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+.+|++.+..+-+.+||++...
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred CceeEEeccccCCCCceeecccc
Confidence 99999999999999999998754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=161.12 Aligned_cols=243 Identities=18% Similarity=0.279 Sum_probs=189.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|...|.|+.|...| .++++|+.|..|+||...+. .....+.||.+.|+.++.+..+. ++++++.|
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~--------~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D 253 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETA--------RCLASCRGHSGDITDLAVSSNNT-MIAAASND 253 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccch--------hhhccCCCCccccchhccchhhh-hhhhcccC
Confidence 4456899999999999999 68999999999999998773 44778999999999999998777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc---cc-cccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RV-KAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~v~~i 264 (406)
..|++|.+..+. ++..+.+|.+.|++|+|+|. ++.+.||++++||.+-.-... .. ......+.++
T Consensus 254 ~vIrvWrl~~~~------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLPDGA------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred ceEEEEecCCCc------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeee
Confidence 999999998874 34667899999999999993 378899999999988211111 11 1123556777
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.|...+. -+++|+.|+.-..|.+.... .+...+.-+.++.+-..+.+++-.+-.+++|++..
T Consensus 323 ~~~~~~~-~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~---------- 384 (1113)
T KOG0644|consen 323 LFENNGD-RFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT---------- 384 (1113)
T ss_pred ecccccc-ccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeeccc----------
Confidence 8877777 79999999988888765321 12222222333333334577777888999999987
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.....+|...+..+.++|-.+.+..+++.||...|||+..++-
T Consensus 385 ----g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 385 ----GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ----chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 4566677889999999999998887888999999999999988753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.9e-16 Score=129.95 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=168.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~i 193 (406)
..++.+.|..+. .+|..|+.|| -++|+...... ..........|..+-|+. . ++|..+.+. .+++
T Consensus 6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k--------~~~~~~~~~~IvEmLFSS--S-LvaiV~~~qpr~Lkv 72 (391)
T KOG2110|consen 6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEK--------CFSKDTEGVSIVEMLFSS--S-LVAIVSIKQPRKLKV 72 (391)
T ss_pred cceeeeeeccce-eEEEccCCCc-eeEEecCchHH--------hhcccCCCeEEEEeeccc--c-eeEEEecCCCceEEE
Confidence 345666688777 6899999998 78888876321 111112223455556664 2 555555443 4888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---ccCCCeeEEEecCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYN 270 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~ 270 (406)
.++.+.... |-. ....+|.++.++. +.|+++-. ..|+|||+++.+.+.++. .+...+.++++++.+
T Consensus 73 ~~~Kk~~~I----Ce~---~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n 141 (391)
T KOG2110|consen 73 VHFKKKTTI----CEI---FFPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN 141 (391)
T ss_pred EEcccCceE----EEE---ecCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence 888764321 111 2456899999873 44444444 349999999999988884 344556667777666
Q ss_pred CcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEeCCCCCcccccccccCC
Q 015484 271 EWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 271 ~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 347 (406)
. ++|--+ ..|.|.+||..+... +..+..|.+.+.+++|+++|. +|||+++.|+ |||+.+..
T Consensus 142 ~-ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~------------- 205 (391)
T KOG2110|consen 142 C-YLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE------------- 205 (391)
T ss_pred c-eEEecCCCCCceEEEEEccccee-eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC-------------
Confidence 6 555433 357999999998654 888999999999999999996 8999999987 78999976
Q ss_pred CCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 348 PPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 348 ~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.++.++.. ...|.+++|+|+++ +|++.+..++|+|++++....++.
T Consensus 206 -G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~ 255 (391)
T KOG2110|consen 206 -GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPP 255 (391)
T ss_pred -ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCC
Confidence 2344444322 33588999999999 688888899999999998875443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-17 Score=142.12 Aligned_cols=253 Identities=20% Similarity=0.313 Sum_probs=175.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec-----CCCCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS-----PFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~dg~i~ 192 (406)
+....++-.+..++.-.+ ..+++|+...... ...++....-......|-+|+ +.+- -|+.|-.-|.|.
T Consensus 126 ~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~----~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq 198 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG--RELYVYSYRGAAD----LSKPIDKREYKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQ 198 (636)
T ss_pred eeeccccCCCCEEEEecC--CeEEEEEccCcch----hccchhhhcccCCCCceecccccccCCCCc-ceEEeeccCceE
Confidence 344444445544443333 3588888875221 122222111111222344442 2233 577888889999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC------------------------
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN------------------------ 248 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~------------------------ 248 (406)
+.|.......+.+..-. .-.+..|+++.|-|.+..+|+++-.+|.+++||....
T Consensus 199 ~idp~~~~~sklfne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 199 LIDPINFEVSKLFNEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred EecchhhHHHHhhhhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 98876632211111101 1134789999999988899999999999999976411
Q ss_pred ----cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 ----QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ----~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.++..+.-....|+.++|+|+|+ +||+.+.||.++|||..+.+. +..++.--+...|++|+|||+ +|++|++|
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGK-yIvtGGED 353 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGK-YIVTGGED 353 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence 01111122345788999999999 999999999999999998654 555666667899999999998 59999999
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC----------------------------------
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---------------------------------- 370 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------------------------------- 370 (406)
-.|.||.+.. .+++..-+||.++|..|+|.|-
T Consensus 354 DLVtVwSf~e--------------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 354 DLVTVWSFEE--------------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred ceEEEEEecc--------------ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 9999999986 5788888999999999999830
Q ss_pred -------------CCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 371 -------------DPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 371 -------------~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
-.|.|.+.+.|-.+.+||+....+..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 13678899999999999999887755
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=144.03 Aligned_cols=248 Identities=16% Similarity=0.249 Sum_probs=170.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEe-CCCccccccCCCCCcee-eeCCCCCeeEEEecC-CCCCeEEE
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFD-CAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSP-FKEGYLVS 184 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~~~~l~s 184 (406)
..++..|...|.|+.|.... .++.+ +.|..+.+|. +........ ...+... ..-| +....--. .+...|+.
T Consensus 7 ~~~k~r~~e~vc~v~w~~~e-ei~~~-~dDh~~~~~~~~~~~s~~~~-~~p~df~pt~~h---~~~rs~~~g~~~d~~~i 80 (737)
T KOG1524|consen 7 ICKKNRNSEKVCCVDWSSNE-EIYFV-SDDHQIFKWSDVSRDSVEVA-KLPDDFVPTDMH---LGGRSSGGGKGSDTLLI 80 (737)
T ss_pred hhhccccceeEEeecccccc-eEEEe-ccCceEEEeecccchhhhhh-hCCcccCCcccc---ccccccCCCCCcceEEE
Confidence 34455778888899999877 34444 4555565554 443221110 0000000 0011 00100000 11226888
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
++.||.+.+.+-... . ......|.+++.+-.|+| ++.-|++++.||.|++|. ++|....++.....+|+|+
T Consensus 81 ~s~DGkf~il~k~~r-V------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 81 CSNDGRFVILNKSAR-V------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EcCCceEEEecccch-h------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 899999999875432 1 134467999999999999 566677999999999998 6677666666678899999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|.|+.+..+.+.+ +.+.+=-+..... +...++|.+-|.++.|++..+ ++++|++|-..+|||-..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G---------- 217 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG---------- 217 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC----------
Confidence 99999986666554 5677766665444 566789999999999999997 799999999999999865
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++....|..+|++++|+|+ . +++.++ -+++++=.++.|
T Consensus 218 -----~~Lf~S~~~ey~ITSva~npd-~-~~~v~S-~nt~R~~~p~~G 257 (737)
T KOG1524|consen 218 -----ANLFTSAAEEYAITSVAFNPE-K-DYLLWS-YNTARFSSPRVG 257 (737)
T ss_pred -----cccccCChhccceeeeeeccc-c-ceeeee-eeeeeecCCCcc
Confidence 777888899999999999999 4 455555 345665444444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=139.56 Aligned_cols=165 Identities=22% Similarity=0.427 Sum_probs=140.5
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
..++..+.|.+...+.|+||+.|..|++|.++...... .+.....+..|..+|+++.|+| ++.++++|+++|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 46899999999877799999999999999998765443 4556677888999999999999 7999999999999999
Q ss_pred EECC--------C-----Cc---ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 243 WDLR--------T-----NQ---TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 243 ~d~~--------~-----~~---~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
|-.. + .+ ....+.+|...+..++|+|++. ++++++.|..+++||+..+.. ...+..|...|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecccee-Eeeccccccccc
Confidence 9765 2 10 1233467889999999999999 999999999999999999776 888999999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++|.|.+++ +++-+.|...+++.+..
T Consensus 170 gvawDpl~qy-v~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 170 GVAWDPLNQY-VASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeecchhhhh-hhhhccCcccceeeeee
Confidence 9999999975 88888898777777654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=143.22 Aligned_cols=221 Identities=18% Similarity=0.283 Sum_probs=171.5
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
.+..+.+|...|+.+.|+|....+|++|+.|..|+||.+..+...+.-.+-..+.+....+.++.|+|....+++++ ..
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~-a~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG-AH 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec-cC
Confidence 45668899999999999998877999999999999999986544332222233344456789999999888888665 46
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC-eEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-VFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-v~~i~~~p~~~~ 316 (406)
|++++||+.+++....+.+|...|.+..|+.+|. +|++.+.|..|+|||.|....+++...+|.+. =..+.|..+-..
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 8999999999999999999999999999999999 99999999999999999988889999988763 456778766555
Q ss_pred EEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 317 VLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 317 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++-+|-. -..|++||.+..+..... ..+. ....|.---+.|+.+.++.+|-.+..+..+.+.+.
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~t-----------leld-~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHT-----------LELD-SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCccee-----------EEee-cccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 4544443 356899999986543322 1222 12235555688998877888888888888887665
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=142.64 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=191.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc------------------------------------
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ------------------------------------ 153 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------------ 153 (406)
+.-+|.|.|+.+.|...| ..|++|+.|..|.+||.........
T Consensus 137 kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344699999999999999 7899999999999999876544320
Q ss_pred ----CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc---cEEEEEeeCC
Q 015484 154 ----DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES---VVEDVSWHLK 226 (406)
Q Consensus 154 ----~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~ 226 (406)
+.......+..|.++|.-++.-|....-|.+++.|+.+.-+|++.......+.+. ..+.. ...+|+.+|.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---EADEKERVGLYTIAVDPR 292 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---ccCCccceeeeeEecCCC
Confidence 1122244556788999999999988878999999999999999886554433322 22223 5788999998
Q ss_pred CCCEEEEEecCCcEEEEECCCCcc------cccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQT------QQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-- 292 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-- 292 (406)
+.+.|++++.|-.+++||.+.-.. +..+ ......|++++++.++. -|++...|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccccCC
Confidence 888999999999999999875322 1222 12345689999997766 45555667789999433211
Q ss_pred ---------CCcEE-ecCCCC--CeEEEEE-cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 293 ---------VPLHI-LSSHTE--EVFQVEW-DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 293 ---------~~~~~-~~~h~~--~v~~i~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
..+.. +++|.. .|..+-| -|..+ ++++|+.-|.|.||+-.. .+++..+.+-.
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t--------------~eii~~MegDr 436 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKT--------------GEIIRFMEGDR 436 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecch--------------hHHHHHhhccc
Confidence 11222 677765 4667765 55665 699999999999999876 24444444445
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..|+|+.=+|.-+ +||++|-|..|+||-+.
T Consensus 437 ~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 437 HVVNCLEPHPHLP-VLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEeccCCCCCCc-hhhccCCccceeeecCC
Confidence 5899999999999 89999999999999983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=130.14 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=189.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEE-eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTK-TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
+.-...|..++|.-++..-+..+ +.+..+..+.+....... .............+|.+++.. +. .|++|-.+|.
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s--~~~~~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~ 126 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS--SLDDAKTVSLGTKSIKGLKLA--DG-TLITCVSSGN 126 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCcccc--ccccccccccccccccchhhc--CC-EEEEEecCCc
Confidence 34456788888886654434444 366667777776643221 111122444556777777664 23 7889999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEEEECCCCcccccccc---------cCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMIWDLRTNQTQQRVKA---------HEK 259 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~---------~~~ 259 (406)
+.+|....+.... ..+..+.. ...+..+.-++....++++|+.. ..+.+||+.+.+.+.+-+. -.-
T Consensus 127 l~~~~~k~~d~hs--s~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 127 LQVRHDKSGDLHS--SKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred EEEEeccCCcccc--ccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 9999988543211 11222332 24566777777788899999998 8899999998755433211 122
Q ss_pred CeeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 260 EVNYLSFNPY-NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 260 ~v~~i~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++.+.|-+. -.+.||+++.-+.+++||.+.+..|+..+..-..+++++...|.+. ++++|..-|.+..||++.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~---- 278 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRG---- 278 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccC----
Confidence 4567888765 1348999999999999999999999999999999999999999997 699999999999999997
Q ss_pred cccccccCCCCeeEE-EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLF-SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+.. .+.+..+.|.++..+|.++ +++++|-|..|||+|+.+.
T Consensus 279 ----------~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 279 ----------GKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ----------ceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 23333 3678889999999999999 7999999999999999984
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=129.56 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=163.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+..+..++|++.- ..+|++..|-.|++|+-... . ...++ .....|+|++|-|.+...|+.|+. +-|++
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~ksst--------~-pt~Lks~sQrnvtclawRPlsaselavgCr-~gIci 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSST--------C-PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICI 166 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCCC--------C-CceecchhhcceeEEEeccCCcceeeeeec-ceeEE
Confidence 3578889999965 56889999999999998761 1 12232 345679999999988767888876 45899
Q ss_pred EeCCCccCC-cee-----ee--eeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 194 WDVSALAQD-KVI-----DA--MHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 194 wd~~~~~~~-~~~-----~~--~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|........ +.+ .+ +....+| .+|++++|++ ++..+++++ .|..|.|||..++..+.......+.+.-+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 987642211 110 01 1122333 6899999999 566666665 67889999999988766554556778889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.|+|++. +|++++-|+..++|.............+ .+.|...+|+|.|+.+|.+++.. -++|.+...++.......
T Consensus 245 kwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 245 KWSPDGD-VLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred EEcCCCC-EEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCc
Confidence 9999999 7888889999999965443322333333 45899999999999878777655 445555543332222111
Q ss_pred cCC-CCeeEEEe------cC---CCCCeeeEEeCCCCCcEEEE
Q 015484 345 EDG-PPELLFSH------GG---HKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 345 ~~~-~~~~~~~~------~~---h~~~v~~~~~s~~~~~~l~s 377 (406)
... ...++..+ .+ ..+.+.+++|.|.|.|+.++
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 000 00111111 11 14578899999999964443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=138.68 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=150.5
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++|+++| ..+++|+.||++|||+... .........|...|.++.|+|+++ +|++.+.| ..+||++++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps--------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS--------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc--------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEecc
Confidence 678999998 6899999999999999876 344666778999999999999999 99999999 899999998
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCC-----CEEEEEecCCcEEEEECCCCcc-----cccccccCCCeeEEEecC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNE-----NLFGSAGDDCQLMIWDLRTNQT-----QQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~i~~~~ 268 (406)
+.......+ .........+.|+. ++ .+++....-+.|+.||+..... ..+.......|.+++.++
T Consensus 217 g~~~a~~t~----~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 217 GAALARKTP----FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred CchhhhcCC----cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 743222111 12233455666764 33 2233334556677777653221 111122345799999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+ ++|.|+.||.|.|++..+.+.....-+.|...|+.+.|+|+.++ +++.+.|..+.|..+..
T Consensus 292 dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 DGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 999 99999999999999999887766667789999999999999985 88888898888887764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=140.98 Aligned_cols=215 Identities=17% Similarity=0.173 Sum_probs=154.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC---CCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC---DPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|.++|.|+++.+.+ ..+.+|+-||+|+.|++. ....+.... .....+.||.+.|+.+++++... .|+++
T Consensus 338 ~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llsc 414 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSC 414 (577)
T ss_pred EEEecccCceEEEEecCCc-eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeeccccc-ceeee
Confidence 3455799999999999998 679999999999999887 333222222 33456889999999999999887 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-------ccC
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-------AHE 258 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~ 258 (406)
+.||++++|+...... ..+ .... ..+...++.+-.......++...-+.-.++++.....+..+. ...
T Consensus 415 s~DgTvr~w~~~~~~~-~~f---~~~~-e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTF---GEPK-EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred cCCceEEeeccCCcCc-ccc---CCcc-ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 9999999999876432 111 1111 122334455543222233333333333344444433333331 122
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..++.+.++|.+. +.+++..|+.|+++|..++.. +.....|...++++++.|+|. +|++++.||.+++|.+..
T Consensus 490 ~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 490 PQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CccceEEecCCCC-eeEecccCCceeccccccccc-chheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 4577889999998 999999999999999998664 888899999999999999998 599999999999999865
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-15 Score=122.34 Aligned_cols=268 Identities=16% Similarity=0.156 Sum_probs=189.3
Q ss_pred eEEEEEeecCCceeEEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 106 VEIAQKIRVDGEVNRARCMP---QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
+...+...| +.++.+.|+. ++...++-+...|.|.+|......... ...++....-......++.|++.+. .+
T Consensus 61 l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--~L~~ls~~ki~~~~~lslD~~~~~~-~i 136 (339)
T KOG0280|consen 61 LDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--HLRGLSSKKISVVEALSLDISTSGT-KI 136 (339)
T ss_pred cceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeee--eecccchhhhhheeeeEEEeeccCc-eE
Confidence 344445444 4577888874 343367778889999999887643211 1111111111112356889999888 78
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccc-ccccCCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQR-VKAHEKE 260 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~ 260 (406)
+++..+|.+.+-+.... .++..+.++.|.-++....|+..+++++.+|++|+.+..||+|.. +.+.. .+.|...
T Consensus 137 ~vs~s~G~~~~v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred EEEcCCCcEEEEeccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 88989999986554442 234456788899999999999888999999999999999999943 33332 4678899
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|.+|.-+|..+.++++|+.|-.|++||.|+..+|+..-.. .+.|..+.++|.....++.++.-.-.+|-+......+
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-- 289 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-- 289 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--
Confidence 9999999887779999999999999999998887765443 4889999999976544555555556777777652221
Q ss_pred cccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEE-EEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DDNTVQ-VWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~-iw~~~~~ 392 (406)
..........|.+-...-.|..... +++|++ .|+.++ +|-.-++
T Consensus 290 -------~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 290 -------FQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred -------hheeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccC
Confidence 1134556677888888888865544 677764 577755 8866554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=137.37 Aligned_cols=262 Identities=17% Similarity=0.240 Sum_probs=184.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC--------------CCCCc------eeee
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD--------------DCDPD------LRLK 163 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~~~------~~~~ 163 (406)
.++++++.++|+...+.|..+|+|..++|+|...-.|++||+.+.....+. ..... ..+.
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 457778889999999999999999999999999999999999886554321 00000 0111
Q ss_pred CCC-----------CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 164 GHD-----------KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 164 ~h~-----------~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
-|. .....++++.-.- -|+.++....|.-++++.+... ..+....+.+++|..++ -..+|+
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~-~hgLla 191 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINE-EHGLLA 191 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEccccccc------cccccccccceeeeecC-ccceEE
Confidence 111 1122333333222 3455555567888888887543 33444568899999998 678999
Q ss_pred EEecCCcEEEEECCCCcccccccc------cC-----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKA------HE-----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~------~~-----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 301 (406)
+|+.+|.|-+||.|....+..+.. +. ..|+++.|+.+|- .+++|+.+|.+.|||+|.....+..-...
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence 999999999999998876655521 22 3499999998876 89999999999999999866544444445
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.-+|..+.|.+.+..--+.......++|||-..+. ..... .....+.++++-|++. ++.++.++
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk--------------~~asi-Ept~~lND~C~~p~sG-m~f~Ane~ 334 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK--------------PMASI-EPTSDLNDFCFVPGSG-MFFTANES 334 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCC--------------ceeec-cccCCcCceeeecCCc-eEEEecCC
Confidence 56899999987643223344456789999987622 22222 2345599999999988 78888888
Q ss_pred CcEEEEeCC
Q 015484 382 NTVQVWQMT 390 (406)
Q Consensus 382 g~i~iw~~~ 390 (406)
+.+..|=+.
T Consensus 335 ~~m~~yyiP 343 (703)
T KOG2321|consen 335 SKMHTYYIP 343 (703)
T ss_pred CcceeEEcc
Confidence 887776554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=138.40 Aligned_cols=230 Identities=15% Similarity=0.238 Sum_probs=180.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
....+.|+.+| ..++.|+..|.|..+|..+... ...+ .-...|.++.|..+.. ++|++ ....+.|||-
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L--------~~Ei-~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~ 198 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKL--------HFEI-NVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDN 198 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeeccccee--------eeee-ehhhhhhhhhhhcchH-HHHhh-hhceEEEecC
Confidence 46778999999 4677888999999999988422 2222 2346788999998776 77766 5678999985
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.. ..+.| +.. ...|..+.|-| .--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|.+. ++-+
T Consensus 199 ~G----tElHC---lk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~ 268 (545)
T KOG1272|consen 199 NG----TELHC---LKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHL 268 (545)
T ss_pred CC----cEEee---hhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEE
Confidence 54 22323 333 35788999999 678889999999999999999999999988888999999999988 9999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
|...|+|.+|.... ..|+..+..|.++|.+|++.++|. +++|++.|..++|||++...+ +.....
T Consensus 269 GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~q-------------l~t~~t 333 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQ-------------LHTYRT 333 (545)
T ss_pred cCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccc-------------cceeec
Confidence 99999999999887 456888888999999999999997 599999999999999998332 222222
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
.-+...+++|..| +||. +....|.||.
T Consensus 334 --p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLAL-SYGDHVQIWK 360 (545)
T ss_pred --CCCcccccccccc--ceee-ecCCeeeeeh
Confidence 2346778888776 3544 3456799995
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=138.16 Aligned_cols=212 Identities=15% Similarity=0.150 Sum_probs=138.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+..|++||..... ...+..|...+.+.+|+|+|+ .|+.++.+ ..|.+||+.++... .+..+.+
T Consensus 183 ~~~i~i~d~dg~~---------~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~----~l~~~~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN---------QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARK----VVASFRG 248 (429)
T ss_pred eEEEEEECCCCCC---------ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceE----EEecCCC
Confidence 4689999987621 345667888899999999998 77776543 47999999875321 1222222
Q ss_pred cCccEEEEEeeCCCCCEEEE-EecCCcEEEE--ECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 214 HESVVEDVSWHLKNENLFGS-AGDDCQLMIW--DLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
....++|+|+ ++.|+. ...+|.+.|| |+.+++ ...+..+...+....|+|+|+.+++++..+|...||++..
T Consensus 249 ---~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 249 ---HNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred ---ccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3346899994 555544 4568876555 665554 3445556667888999999995555555678888888754
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.......+ .+.. ....|+|+++. |+.++.++ +.+||+..... ..+. ..+ ....+.|+|+
T Consensus 324 ~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~------------~~lt--~~~--~~~~~~~sPd 382 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGST------------EVLS--STF--LDESPSISPN 382 (429)
T ss_pred CCCCeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCe------------EEec--CCC--CCCCceECCC
Confidence 33323333 3333 45789999985 66666554 55689876221 1111 111 2356789999
Q ss_pred CCcEEEEEeCCCcEEEEeC
Q 015484 371 DPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~ 389 (406)
|+ +|+.++.++.+.+|.+
T Consensus 383 G~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 383 GI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CC-EEEEEEcCCCceEEEE
Confidence 99 5777777888887775
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-14 Score=125.82 Aligned_cols=239 Identities=10% Similarity=0.098 Sum_probs=148.9
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-cCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-SHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
++++...++.|.+|++.... .......+. +.+....++++|+++ +|+++ ..++.|.+|+++.... +...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g-----~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~---l~~~ 73 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG-----ALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGA---LTFA 73 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC-----ceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCc---eEEe
Confidence 44555778999999996421 122234443 345577899999998 66555 4588999999973211 1111
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-c---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-T---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
.... .......++|+|++..++++...++.|.+|++.+.. . +..+. +......++++|+++.++++...++.|.
T Consensus 74 ~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 2111 233466899999544444444468999999997432 1 12222 2344677899999995666666779999
Q ss_pred EEeCCCCCCCc------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-
Q 015484 285 LFDMRKMTVPL------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG- 357 (406)
Q Consensus 285 vwd~~~~~~~~------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 357 (406)
+||+....... .... .......+.|+|++++++++...++.|.+|++....... ..+.....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----------~~~~~~~~~ 220 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----------ECVQTLDMM 220 (330)
T ss_pred EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----------EEEEEEecC
Confidence 99997633211 1111 234567899999998644444459999999997421110 11111111
Q ss_pred -----CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 358 -----HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 358 -----h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+......+.++|++++++++...++.|.+|++..
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1123446899999996555545688999999854
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-13 Score=116.37 Aligned_cols=208 Identities=16% Similarity=0.245 Sum_probs=140.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc----CC--CCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ----DD--CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
-...|+|++|-|.+...|++|...| |.||.......... .. ...+....+| .+|++++|+++|. .+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeeccc
Confidence 3478999999998878899999887 99998875432211 01 1112233345 6899999999998 8888775
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
|..|.|||..++...... ....+.+.-+.|+| ++..|.+++.|+..++|...............+.|....|
T Consensus 216 gsssi~iWdpdtg~~~pL~------~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacW 288 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLI------PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACW 288 (445)
T ss_pred CcceEEEEcCCCCCccccc------ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeee
Confidence 568999999987653221 12356788899999 6777778899999999965543332233334558999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCC--------------------cEEecC---CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVP--------------------LHILSS---HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------------------~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+|.|+.+|++.+... ++|.+.-..++ +....+ -.+.+.+++|.|.|.+ ||+.-.
T Consensus 289 spcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fK 365 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFK 365 (445)
T ss_pred cCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEc
Confidence 999997777776544 44433221110 000111 1357899999999986 666554
Q ss_pred CC--------cEEEEeCCC
Q 015484 324 DR--------RLMVWDLNR 334 (406)
Q Consensus 324 dg--------~i~iwd~~~ 334 (406)
.+ .|.+||.+.
T Consensus 366 g~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CCchhhhhhhhhhhhcccc
Confidence 33 366777765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=135.80 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=143.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-c
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSS---CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-S 186 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~ 186 (406)
...|...+...+|+|++. .|+..+.+ ..|++||+.+... ..+..+.+| ..+++|+|+|+ .|+.+ +
T Consensus 199 lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~------~~l~~~~g~---~~~~~wSPDG~-~La~~~~ 267 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR------KVVASFRGH---NGAPAFSPDGS-RLAFASS 267 (429)
T ss_pred eccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce------EEEecCCCc---cCceeECCCCC-EEEEEEe
Confidence 345778899999999995 56655543 4799999976321 112223333 34689999998 66655 5
Q ss_pred CCCeEEEE--eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 187 HDNKICLW--DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 187 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
.+|.+.|| |+.++. ...+..+...+....|+|++..++++...+|...+|++...........+.. ...
T Consensus 268 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~ 338 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA 338 (429)
T ss_pred cCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence 68876666 544432 1223445666888999995444555555678888888754322112212332 457
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|+|+|+ .|+..+.++ +.+||+.++.. ..+..+ .....+.|+|+++ +|+.++.++.+.+|++....
T Consensus 339 ~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~-------- 404 (429)
T PRK01742 339 QISADGK-TLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSAD-------- 404 (429)
T ss_pred cCCCCCC-EEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCC-EEEEEEcCCCceEEEEEECC--------
Confidence 8999999 666666654 66799987653 222221 2335678999998 57888888888888764311
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
......+.+|.+.+...+|+|-
T Consensus 405 ----G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 ----GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ----CCceEEccCCCCCCCCcccCCC
Confidence 1344555677788999999985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=122.80 Aligned_cols=162 Identities=20% Similarity=0.337 Sum_probs=123.0
Q ss_pred CCeeEEEecCCCC--CeEEEecCCCeEEEEeCCCccCCce----eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKE--GYLVSGSHDNKICLWDVSALAQDKV----IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
+.+.+..|..... -+|++|.++|.+.+||+.++...-. .+.......|..+|.++.+.+.. ..=++|+.+..+
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl 229 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKL 229 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccc
Confidence 3455555443221 1578888999999999998632211 12234456789999999998743 333477888889
Q ss_pred EEEECCCCcc----cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 241 MIWDLRTNQT----QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 241 ~i~d~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
..|++..... ...+......|..+..-|+++ ++|+++.|+.|+||..+++. |+..++.|+..|++++|+|+.+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~- 306 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE- 306 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-
Confidence 9998875421 122233455688899999999 99999999999999999966 5999999999999999999976
Q ss_pred EEEEEeCCCcEEEEeC
Q 015484 317 VLASSADDRRLMVWDL 332 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~ 332 (406)
++|+++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 7999999999999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=131.91 Aligned_cols=198 Identities=15% Similarity=0.232 Sum_probs=151.3
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCcc---------
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALA--------- 200 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------- 200 (406)
-+..|-..|.|.+.|........ -. .....-.+..|+|+.|-|.+...++.+-.+|.+.+||.....
T Consensus 187 dllIGf~tGqvq~idp~~~~~sk--lf--ne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSK--LF--NEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred ceEEeeccCceEEecchhhHHHH--hh--hhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 46678888999998876621100 00 000111237899999999888788888899999999864310
Q ss_pred --CCcee-----------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 201 --QDKVI-----------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 201 --~~~~~-----------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
....+ .++..+....+.|+..+|+| ++.+||+.+.||.+||||..+.+.+..++..-+...|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 00000 12223333456789999999 89999999999999999999998888887778899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC----------------------------------
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN---------------------------------- 313 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~---------------------------------- 313 (406)
|||+ ++++|++|--|.||.+...+. +..-.+|++.|+.++|.|-
T Consensus 342 PDGK-yIvtGGEDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 342 PDGK-YIVTGGEDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred CCcc-EEEecCCcceEEEEEeccceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 9999 999999999999999987554 8888999999999999831
Q ss_pred -------------CCCEEEEEeCCCcEEEEeCCC
Q 015484 314 -------------HETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 314 -------------~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+-|.+.+.|..+.+||+..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecch
Confidence 123578889999999999865
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=128.41 Aligned_cols=213 Identities=14% Similarity=0.199 Sum_probs=151.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---C-----CCCC-------------------ceeee
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ---D-----DCDP-------------------DLRLK 163 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~-----~~~~-------------------~~~~~ 163 (406)
..+|++.|+|++|+.+| ..+|+|+.|..|.||+.+-.....- . ...| .....
T Consensus 49 LKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS 127 (1081)
T ss_pred cccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence 45799999999999998 5799999999999998654321110 0 0000 00011
Q ss_pred C--CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC----CCEEEEEecC
Q 015484 164 G--HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN----ENLFGSAGDD 237 (406)
Q Consensus 164 ~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~----~~~l~~~~~d 237 (406)
. ....|.+++|..+|. +|+.|-.+|+|.+-+-...... .+....+..++|.+++|+|.. ..++++....
T Consensus 128 K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~----~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKV----KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcce----EEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence 1 124577888999888 9999999999998864332211 122233467899999999853 3577888888
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.++.++.+. |+.+..-..-.-...|+++.++|+ +++.|+.|+.+++|-... ..+.++-.....|..++..|++++
T Consensus 203 qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~G--vrLGTvg~~D~WIWtV~~~PNsQ~- 277 (1081)
T KOG1538|consen 203 QTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRDG--VRLGTVGEQDSWIWTVQAKPNSQY- 277 (1081)
T ss_pred ceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEeecC--eEEeeccccceeEEEEEEccCCce-
Confidence 888888875 444433333344567899999999 888899999999996442 225555556789999999999985
Q ss_pred EEEEeCCCcEEEEeCCC
Q 015484 318 LASSADDRRLMVWDLNR 334 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~ 334 (406)
++.|+.||+|-.|++..
T Consensus 278 v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEEccCeeehhhhHH
Confidence 89999999999998754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-14 Score=130.42 Aligned_cols=247 Identities=18% Similarity=0.236 Sum_probs=171.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC--CeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE--GYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~i 193 (406)
..-....|+++++.+++ . ....|.||...++ .++..+.+|..++..+.+.|... .++.+++.||.|++
T Consensus 17 ~~~~~avfSnD~k~l~~-~-~~~~V~VyS~~Tg--------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFL-C-TGNFVKVYSTATG--------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred ceecccccccCCcEEEE-e-eCCEEEEEecchH--------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 33344568888854443 3 3567999999984 33668999999999999988765 47789999999999
Q ss_pred EeCCCccCCceeee-----------------------------eee----------------e--------eccCccEEE
Q 015484 194 WDVSALAQDKVIDA-----------------------------MHV----------------Y--------EAHESVVED 220 (406)
Q Consensus 194 wd~~~~~~~~~~~~-----------------------------~~~----------------~--------~~~~~~i~~ 220 (406)
||...+...+.+.. +.. + ..+. .-.+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~ 165 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS 165 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence 99877533221100 000 0 0000 0123
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC---CCC
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK---MTV 293 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~ 293 (406)
|.+++ .+.+. ....+..+.+|....+... ... ..|.-.+++.+++|.++ ++|+|..||.|.+|.--. ...
T Consensus 166 I~~~~-~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 166 IVDNN-SGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EEEcC-CceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccc
Confidence 34443 23333 3344556888887764411 111 34666689999999999 999999999999995332 223
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
..+.+.-|...|++++|+++|. +|++|+..|.+.+|.+.+.++ +++ ..-.++|..+.++|++.
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~k------------qfL---PRLgs~I~~i~vS~ds~- 305 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGKK------------QFL---PRLGSPILHIVVSPDSD- 305 (792)
T ss_pred cceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCCc------------ccc---cccCCeeEEEEEcCCCC-
Confidence 3567788999999999999998 499999999999999988432 222 22356899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 015484 374 VISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.+...+|+.|++-...+-.
T Consensus 306 ~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 306 LYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred eEEEEecCceEEEEeccchh
Confidence 57777789999999886543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=110.12 Aligned_cols=196 Identities=15% Similarity=0.226 Sum_probs=140.4
Q ss_pred eeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 118 VNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
|.-+-|+. .++|..+.+ ..+++++...... +..+ ....+|.+|.++. + +|+.+=.+ .|.|||
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~--------ICe~-~fpt~IL~VrmNr--~-RLvV~Lee-~IyIyd 112 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT--------ICEI-FFPTSILAVRMNR--K-RLVVCLEE-SIYIYD 112 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEcccCce--------EEEE-ecCCceEEEEEcc--c-eEEEEEcc-cEEEEe
Confidence 34444554 345544443 3588888876321 2222 2356789999975 3 56666444 499999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE--ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA--GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++..+.. ..+.....+...+.++.+++ .+.+++-- ...|.|.+||+.+-+.+..+.+|++.+-+++|+++|. +
T Consensus 113 I~~MklL---hTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-l 187 (391)
T KOG2110|consen 113 IKDMKLL---HTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-L 187 (391)
T ss_pred cccceee---hhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-E
Confidence 9986433 22233334555676666665 44566543 3578999999999999999999999999999999999 9
Q ss_pred EEEEeCCC-cEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 274 LATASSDT-TVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 274 l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
||+++..| .|||+.+.++.. +..+.... ..|.+++|+|+++ +|++.+..++|.||.+....
T Consensus 188 lATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 188 LATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEeccCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 99999999 579999988765 55554322 3688999999997 68888999999999997644
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=121.06 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=159.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--CeEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NKIC 192 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~ 192 (406)
.+.|..++... ..|++|-.+|.+.+|........ ..+...+..+ ..+..+.-++..++++++|+.. ..+.
T Consensus 105 ~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~h----ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 105 TKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLH----SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccchhhcC---CEEEEEecCCcEEEEeccCCccc----cccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 34455554432 35888899999999999864321 1233444433 4567788888777678889998 8899
Q ss_pred EEeCCCccCCceeeeeee--e-eccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEe
Q 015484 193 LWDVSALAQDKVIDAMHV--Y-EAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~--~-~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~ 266 (406)
+||++.......-+.+.. + -.-.-.++++.|-+ + ...|++++.-+.+++||++.+ +++..+.....+++++..
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 999988632211111000 0 01134567888987 5 788999999999999999975 457777777899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|.+. ++.+|..-|.+..||+|.+......+.+-.+.|.+|..+|.++ ++++++-|..|+|+|+.+
T Consensus 256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 99999 8999999999999999998877777899999999999999997 799999999999999987
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-12 Score=114.77 Aligned_cols=302 Identities=11% Similarity=0.128 Sum_probs=189.1
Q ss_pred EEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEe---CCCeE
Q 015484 64 FVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKT---SSCEV 140 (406)
Q Consensus 64 ~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---~dg~i 140 (406)
+++|+++. +..+.|++.++. .+ .+.+.......-......++++|++..+.++.. .+|.|
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d-----------~~-----~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v 64 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFD-----------EE-----TGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGV 64 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEE-----------TT-----TTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEE
T ss_pred EEEEcCCC-CCCCcEEEEEEc-----------CC-----CCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCE
Confidence 67889875 555788877664 11 245766666666778888999999954444443 36799
Q ss_pred EEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeee-------
Q 015484 141 YVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYE------- 212 (406)
Q Consensus 141 ~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~------- 212 (406)
..|++..... ....+............++.+|+++ +|+++. .+|.|.++++................
T Consensus 65 ~~~~i~~~~g----~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 65 SSYRIDPDTG----TLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EEEEEETTTT----EEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred EEEEECCCcc----eeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence 9999887411 1122333332334456799999998 666664 58999999998742211111111110
Q ss_pred -ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-c---ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 213 -AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-Q---QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 213 -~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.......++.|+|++..++++.-....|.+|++..... + ..+ ......-+.+.|+|+++.++++...++.|.++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 12345788999995444554444556799999976552 2 112 12345678899999999666777778899999
Q ss_pred eCCCCCCC---cEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 287 DMRKMTVP---LHILSS------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 287 d~~~~~~~---~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
++....-. +..... .......|+++|+++++.++....+.|.+|++..... ....+.....
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g----------~l~~~~~~~~ 289 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG----------TLTLVQTVPT 289 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT----------TEEEEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC----------ceEEEEEEeC
Confidence 98832211 111111 1126889999999998777777889999999954211 1233333332
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCcccCCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIYRDD 397 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~ 397 (406)
.......++++|+|++++++...++.|.+|++ .++.+...
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 33458899999999987777778889999977 46665443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-14 Score=115.38 Aligned_cols=157 Identities=14% Similarity=0.368 Sum_probs=103.8
Q ss_pred EEEEeeCCCCCEEEEEec---------CCcEEEEECCCC-cccccccc-cCCCeeEEEecCCCCcEEEE-EeCCCcEEEE
Q 015484 219 EDVSWHLKNENLFGSAGD---------DCQLMIWDLRTN-QTQQRVKA-HEKEVNYLSFNPYNEWVLAT-ASSDTTVALF 286 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~-~~~~~~~~-~~~~v~~i~~~~~~~~~l~~-~~~dg~i~vw 286 (406)
..+.|+|.+..+++.... -|...+|-++.. .....+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 356788855555544441 133555555332 22333322 34579999999999844333 4456799999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
|++ ..++..+ +...++.|.|+|+|+. |++++. .|.|.+||.+. ...+.... | ..++
T Consensus 89 d~~--~~~i~~~--~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~--------------~~~i~~~~-~-~~~t 147 (194)
T PF08662_consen 89 DVK--GKKIFSF--GTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRK--------------KKKISTFE-H-SDAT 147 (194)
T ss_pred cCc--ccEeEee--cCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCC--------------CEEeeccc-c-CcEE
Confidence 997 2334444 4577899999999985 666553 46799999985 23343332 3 3478
Q ss_pred eEEeCCCCCcEEEEEe-----CCCcEEEEeCCCcccCC
Q 015484 364 DFSWNKNDPWVISSVA-----DDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~-----~dg~i~iw~~~~~~~~~ 396 (406)
.++|+|+|++++.+.+ .|+.++||++....+..
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred EEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 9999999997555544 38999999998776644
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-13 Score=124.73 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=143.4
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..|...+.+.+|+|+|+ .|+..+. +..|.+||+.++.. ..+..+
T Consensus 182 ~~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~ 244 (435)
T PRK05137 182 KRLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-------ELVGNF 244 (435)
T ss_pred eEEEEECCCCC---------CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-------EEeecC
Confidence 36888887552 2345667888999999999998 7776653 46899999987642 222334
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCc--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCC--cEEEEeCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQ--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDT--TVALFDMR 289 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg--~i~vwd~~ 289 (406)
.+.+....|+|++..++++.+.++. |.+||+.++.. ..+..+........|+|+|+ .|+..+ .+| .|+++|+.
T Consensus 245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECC
Confidence 5567788999965555566666665 77779887654 34444555667799999999 555444 444 68888876
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
... ...+..+...+....|+|+|+.++++.... ..|.+||+..... ..+ . .+ ..+....|
T Consensus 323 g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~------------~~l-t-~~--~~~~~p~~ 384 (435)
T PRK05137 323 GSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE------------RIL-T-SG--FLVEGPTW 384 (435)
T ss_pred CCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce------------Eec-c-CC--CCCCCCeE
Confidence 543 344444456677789999998644444333 3577788654111 111 1 11 23678899
Q ss_pred CCCCCcEEEEEeCC-----CcEEEEeCCCccc
Q 015484 368 NKNDPWVISSVADD-----NTVQVWQMTDSIY 394 (406)
Q Consensus 368 s~~~~~~l~s~~~d-----g~i~iw~~~~~~~ 394 (406)
+|+|+.+++++... ..+.++++..+..
T Consensus 385 spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 385 APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 99999655555433 2577778776543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-13 Score=122.64 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=135.5
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec---CCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS---HDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|..... ...+..+...+.+.+|+|+|+ .|+..+ .+..|.+|++.+++.. .+.. ..
T Consensus 180 ~l~~~d~dg~~---------~~~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~----~l~~---~~ 242 (429)
T PRK03629 180 ELRVSDYDGYN---------QFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR----QVAS---FP 242 (429)
T ss_pred eEEEEcCCCCC---------CEEeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeE----EccC---CC
Confidence 68888887621 233455677899999999998 666543 2457999999775421 1122 22
Q ss_pred ccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEE--eCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALF--DMRK 290 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vw--d~~~ 290 (406)
..+....|+|++..++++.+.+| .|++||+.+++... +..+...+....|+|+|+ .|+..+ .++...+| |+..
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCC
Confidence 33456899995544554545555 48899998876543 333445678899999999 554444 44544444 6654
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
+. ...+..+........|+|+|+.+++++..++ .|.+||+..... ..+. .. .......|+
T Consensus 321 g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------~~Lt--~~--~~~~~p~~S 382 (429)
T PRK03629 321 GA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------QVLT--DT--FLDETPSIA 382 (429)
T ss_pred CC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------EEeC--CC--CCCCCceEC
Confidence 33 3444444455677899999986444444443 478888865221 1111 11 123467899
Q ss_pred CCCCcEEEEEeCCCc---EEEEeCCCccc
Q 015484 369 KNDPWVISSVADDNT---VQVWQMTDSIY 394 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~---i~iw~~~~~~~ 394 (406)
|+|++ |+.++.++. +.+++++.+..
T Consensus 383 pDG~~-i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 383 PNGTM-VIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CCCCE-EEEEEcCCCceEEEEEECCCCCe
Confidence 99995 555555553 77778865543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-15 Score=134.10 Aligned_cols=278 Identities=20% Similarity=0.390 Sum_probs=201.9
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCC--CC
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFK--EG 180 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~--~~ 180 (406)
+.|-..-.+.-.+.++.+..+|.|+. +|.++.-| +++-|+... ..|..-+..-+ -.|-.+.|+|.. ..
T Consensus 13 ~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p-------~~ppr~l~h~tpw~vad~qws~h~a~~~ 83 (1081)
T KOG0309|consen 13 PTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP-------FTPPRWLHHITPWQVADVQWSPHPAKPY 83 (1081)
T ss_pred CccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCC-------CCCceeeeccCcchhcceecccCCCCce
Confidence 33444445566789999999999965 66666666 778888873 34444443222 346678898753 31
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEK 259 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 259 (406)
.+++.+ ...-.+|++...... .+ -..+.+|..+|+++.|+|+.+.++++++.|-.+..||+++... +.....-..
T Consensus 84 wiVsts-~qkaiiwnlA~ss~~-aI--ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 84 WIVSTS-NQKAIIWNLAKSSSN-AI--EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred eEEecC-cchhhhhhhhcCCcc-ce--EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 344444 455568998765432 22 2345689999999999999999999999999999999998654 344444455
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
....++|+-..++.+| .+....|.+||+|.+..|+..+++|...|+.+.|+..-...+.+++.||+|++||..+...+.
T Consensus 160 ~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred cCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 6678999988874555 455668999999999999999999999999999988665678999999999999987643322
Q ss_pred ccccc-----------------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCC-------
Q 015484 340 LELDA-----------------------------------------EDGPPELLFSHGGHKAKISDFSWNKND------- 371 (406)
Q Consensus 340 ~~~~~-----------------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~------- 371 (406)
..... .......+..+.||...|..+.|-..+
T Consensus 239 ~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 239 KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 11000 011245677888999999988885432
Q ss_pred --CcEEEEEeCCCcEEEEeCCCcccC
Q 015484 372 --PWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 372 --~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+.|++-+.|..+++|-+.+.+++
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred ccceeEEEeecCCceEeeeccHHHHH
Confidence 257999999999999999988764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-13 Score=125.87 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=138.7
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.+||.... ....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.++.. ..+...
T Consensus 184 ~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~ 246 (433)
T PRK04922 184 YALQVADSDGY---------NPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR-------ELVASF 246 (433)
T ss_pred EEEEEECCCCC---------CceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE-------EEeccC
Confidence 36888988642 1344566777899999999998 7777653 34699999977542 112223
Q ss_pred CccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRK 290 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~ 290 (406)
.+...+..|+|++..++++.+.+| .|++||+.+++. ..+..+.......+|+|+++.++++...+|. |+++|+..
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 344557899996555655666665 599999988764 3344444455678999999944444444554 66667665
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
+. ...+..+.......+|+|+|+.++++...++ .|.+||+..... . .+. +........|+
T Consensus 326 g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------~---~Lt-~~~~~~~p~~s 387 (433)
T PRK04922 326 GS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------R---TLT-PGSLDESPSFA 387 (433)
T ss_pred CC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------E---ECC-CCCCCCCceEC
Confidence 43 3333333444557899999986444443333 589999865221 1 111 11234567999
Q ss_pred CCCCcEEEEEeCC--CcEEEEeCCCcc
Q 015484 369 KNDPWVISSVADD--NTVQVWQMTDSI 393 (406)
Q Consensus 369 ~~~~~~l~s~~~d--g~i~iw~~~~~~ 393 (406)
|+|++++++.... +.|.++++..+.
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCc
Confidence 9999655554433 357777776554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=109.49 Aligned_cols=235 Identities=14% Similarity=0.224 Sum_probs=154.7
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC--CeeEEEecCCCCCeEE-EecCC------C
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK--EGYGLSWSPFKEGYLV-SGSHD------N 189 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~-s~~~d------g 189 (406)
.+++|+.+. ..+++|..+| .+||+++.-.+. .....+.+ .+..+-|- .+ +|+ .|+.+ .
T Consensus 9 lsvs~NQD~-ScFava~~~G-friyn~~P~ke~--------~~r~~~~~G~~~veMLfR--~N-~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 9 LSVSFNQDH-SCFAVATDTG-FRIYNCDPFKES--------ASRQFIDGGFKIVEMLFR--SN-YLALVGGGSRPKYPPN 75 (346)
T ss_pred eEEEEccCC-ceEEEEecCc-eEEEecCchhhh--------hhhccccCchhhhhHhhh--hc-eEEEecCCCCCCCCCc
Confidence 348999887 5788888888 999999873321 11111221 22222222 12 333 33332 4
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccccccc--cCCCeeEEEe
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRVKA--HEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~--~~~~v~~i~~ 266 (406)
.|.|||=.... ++..+ ....+|.+|.+.+ ..+++.- .+.|.+|... ..+.+..+.. ....+.+++-
T Consensus 76 kviIWDD~k~~------~i~el-~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 76 KVIIWDDLKER------CIIEL-SFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred eEEEEecccCc------EEEEE-EeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecC
Confidence 69999933222 22222 2467899999974 3443443 5689999887 4455554421 2233444444
Q ss_pred cCCCCcEEEE-EeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLAT-ASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~ 343 (406)
+.... +||. |-.-|.|.|-|+..... +...+.+|.+.|.+++.+-+|. ++||+|..|+ |+|||..++.
T Consensus 145 ~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~------- 215 (346)
T KOG2111|consen 145 TSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGT------- 215 (346)
T ss_pred CCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCc-------
Confidence 43333 4444 44568999999987554 4578899999999999999996 8999999987 7999998733
Q ss_pred ccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++..+ ......|.+++|||+.. .||++++-|+|+|+.+.....
T Consensus 216 -------~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 216 -------LLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred -------EeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCC
Confidence 23322 22345699999999999 588889999999999987654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-13 Score=125.77 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=132.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..+...+.+.+|+|+|+ .|+..+.+ ..|.+||+.++... .+...
T Consensus 176 ~~L~~~D~dG~---------~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~-------~l~~~ 238 (427)
T PRK02889 176 YQLQISDADGQ---------NAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRR-------VVANF 238 (427)
T ss_pred cEEEEECCCCC---------CceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEE-------EeecC
Confidence 35777776441 1334556778899999999998 77666532 45999999876421 12223
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEE--CCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWD--LRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+.+....|+|++..++++.+.+|...+|. +..+. ...+..+........|+|+|+.+++++..+|...+|.+....
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 345567899996555555677788766665 44443 444444455566789999999444454445666666554222
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.....+..+........|+|+|+. |+..+.++ .|.+||+..... ..+ .. ........|+|
T Consensus 318 g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~------------~~l---t~-~~~~~~p~~sp 380 (427)
T PRK02889 318 GAAQRVTFTGSYNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQV------------TAL---TD-TTRDESPSFAP 380 (427)
T ss_pred CceEEEecCCCCcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCe------------EEc---cC-CCCccCceECC
Confidence 112333333334456789999986 55544443 699999876221 111 11 12346789999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCC
Q 015484 370 NDPWVISSVADDNT--VQVWQMTD 391 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~ 391 (406)
+|+.++++....|. +.+.++..
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEECCC
Confidence 99976666655554 44445533
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=117.46 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=176.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC------------CCeeEEEecCCCC-Ce
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD------------KEGYGLSWSPFKE-GY 181 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~~~-~~ 181 (406)
..-|.++.|...| .+||||..+|.|.+|.-...... .......++.|. ..|..+.|.+++. ..
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 4568899999988 68999999999999987664321 122233444443 4688899998754 25
Q ss_pred EEEecCCCeEEEEeCCCccCCc---------------ee--------------eeeeee-eccCccEEEEEeeCCCCCEE
Q 015484 182 LVSGSHDNKICLWDVSALAQDK---------------VI--------------DAMHVY-EAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~---------------~~--------------~~~~~~-~~~~~~i~~i~~~p~~~~~l 231 (406)
++....|.+|++|.+......+ .+ .|.+.+ ..|..-|++|.++. +...+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~ 179 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETF 179 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceE
Confidence 6666789999999987533211 00 111222 35778899999997 45555
Q ss_pred EEEecCCcEEEEECCCCcccccc---c-----ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---------
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRV---K-----AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP--------- 294 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~---~-----~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------- 294 (406)
+ ..+|=.|.+|.+.-...-..+ + ....-|++..|+|..-++++-.+..|+|++.|+|.....
T Consensus 180 l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 L-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred e-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 4 456778999998754432222 2 223568899999988888999999999999999953211
Q ss_pred ------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe---eeE
Q 015484 295 ------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI---SDF 365 (406)
Q Consensus 295 ------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~~ 365 (406)
...+..--..|..+.|++.|++ +++-. --+|++||+.....+.........-...+..+. -...| ..+
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY-EnD~IfdKFec 335 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY-ENDAIFDKFEC 335 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh-hccchhheeEE
Confidence 1111122246889999999984 65543 468999999764432211111000000000000 01223 458
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+|+.++. .++||+..+.++++++..+..++.
T Consensus 336 ~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 336 SWSGNDS-YVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred EEcCCcc-eEecccccceEEEecCCCCcceee
Confidence 9999998 689999999999999887765443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=137.09 Aligned_cols=244 Identities=16% Similarity=0.272 Sum_probs=176.7
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..-+|.+.|+.++.+..+ .++|+++.|..|++|.+.. ..|+..+.+|++.|++|+|+|-. +.+.||
T Consensus 227 s~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~--------~~pvsvLrghtgavtaiafsP~~-----sss~dg 292 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD--------GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDG 292 (1113)
T ss_pred cCCCCccccchhccchhh-hhhhhcccCceEEEEecCC--------CchHHHHhccccceeeeccCccc-----cCCCCC
Confidence 345899999999999877 6899999999999999998 56788899999999999999843 677899
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
++++||.+-......-.+. .+ .....+-++.|.. ...-+++++.|+.-..|.+.... .+...+.-+..+.+
T Consensus 293 t~~~wd~r~~~~~y~prp~-~~-~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd 363 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPL-KF-TEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSD 363 (1113)
T ss_pred ceEeccccccccccCCCCC-Cc-ccccceeeeeccc-cccccccccCCcccccchhhHhh------hhccceEEEecccc
Confidence 9999998721111111111 11 1234556666664 56778899999988888764321 12222222222222
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
-..+.+++-.+-.+++|++-.+.. .+.+.+|...+..+.++|.+..+..+++.||...|||+-.+. +
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~------------p 430 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI------------P 430 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC------------c
Confidence 223667777788899999998765 788889999999999999998888899999999999997632 2
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+. .+| ..+.+-.||++|. -++....-|.++|.....+
T Consensus 431 ik~y~-~gh-~kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 431 IKHYF-IGH-GKLVDGKFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ceeee-ccc-ceeeccccCCCCc-eEecCCCCCceEEeccCCC
Confidence 22222 344 4577889999998 4666666788888766544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=132.32 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=156.5
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
..+..+..|...+..++.++....+++|||.||+|++|+....... ...+...++......+.++.+.+ ++..+|.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEc
Confidence 3456677888899999998877459999999999999999875433 34445555555677888888887 788899999
Q ss_pred cCCcEEEEECCCCccc-------ccccc-cCCCee-EEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCC
Q 015484 236 DDCQLMIWDLRTNQTQ-------QRVKA-HEKEVN-YLSFNPYNEW-VLATASSDTTVALFDMRKMTVPLHI--LSSHTE 303 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~-------~~~~~-~~~~v~-~i~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~ 303 (406)
.||.|++.++...+.. ..... ..+.+. .-++...... .++.+..-+.|..||.|+... ... .....+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCcccc
Confidence 9999999999863211 11111 122333 3344333332 788888889999999998653 222 334457
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE-ecCCCCCeeeEEeCCCCC---cEEEEEe
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS-HGGHKAKISDFSWNKNDP---WVISSVA 379 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~---~~l~s~~ 379 (406)
.|++++.+|.+. ++++|+..|.+.+||++-. .++.. ..++..+|..+..+|..+ +.++++.
T Consensus 1197 ~vTSi~idp~~~-WlviGts~G~l~lWDLRF~--------------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR--------------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred ceeEEEecCCce-EEEEecCCceEEEEEeecC--------------ceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 899999999997 6999999999999999872 22222 234457788888777543 4444444
Q ss_pred -CCCcEEEEeCCCccc
Q 015484 380 -DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 -~dg~i~iw~~~~~~~ 394 (406)
..+-|.+|++.+|..
T Consensus 1262 ~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCCceeeeecccCcc
Confidence 567899999998843
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-13 Score=111.06 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=165.1
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecC---CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSP---FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 211 (406)
..|.+.+|++...... +...++ .-+..+..+.|+. ++.-.++-+...|.|.++........-.++++...
T Consensus 44 R~Gkl~Lys~~d~~~~------~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ 117 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLS------PLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK 117 (339)
T ss_pred eccceEEEeecccccC------ccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh
Confidence 3578999999885432 222222 2345677888864 22225667778899999987654433333333222
Q ss_pred eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 212 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.-......++.|++ .+..++++-.+|.+.+-+...... ++..+.|.-......|+...++++.+|+.|+.+..||+|
T Consensus 118 ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 118 KISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 21222345778887 566677888899998666555443 447789999999999998888899999999999999999
Q ss_pred CCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 290 KMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 290 ~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
.++..+.. .+.|...|.+|.-+|..++.++||+.|-.|++||.++.+++..... -.+.|+.+.++
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--------------v~GGVWRi~~~ 262 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--------------VGGGVWRIKHH 262 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--------------cccceEEEEec
Confidence 55443333 5678899999999998888999999999999999998765443211 12679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 369 KNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
|.....+..+..-+-.+|-+++.+..+
T Consensus 263 p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred chhhhHHHHHHHhcCceEEEecccccc
Confidence 864422333333444677777766554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=126.87 Aligned_cols=250 Identities=14% Similarity=0.177 Sum_probs=182.8
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
++...+.-...|..+.|.... .++|++ ....++|||-.. ..++.++.| ..|..+.|.|..- +|++++
T Consensus 162 ~L~~Ei~v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~G---------tElHClk~~-~~v~rLeFLPyHf-LL~~~~ 228 (545)
T KOG1272|consen 162 KLHFEINVMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNG---------TELHCLKRH-IRVARLEFLPYHF-LLVAAS 228 (545)
T ss_pred eeeeeeehhhhhhhhhhhcch-HHHHhh-hhceEEEecCCC---------cEEeehhhc-Cchhhhcccchhh-eeeecc
Confidence 344555566789999998876 567765 566799999765 224445544 4688999999877 899999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
..|.++.-|+..++.... +....+.+..++-+| -+.++-+|...|+|.+|.....+++..+..|.++|.+|++
T Consensus 229 ~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv 301 (545)
T KOG1272|consen 229 EAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV 301 (545)
T ss_pred cCCceEEEeechhhhhHH------HHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence 999999999999865432 334456788888888 6788889999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
.+.|. +++|.+.|..++|||+|+...+ .+... ..+...+++|..| +++++....|.||.=...+..
T Consensus 302 ~~~G~-YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~-------- 367 (545)
T KOG1272|consen 302 DRGGR-YMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSG-------- 367 (545)
T ss_pred CCCCc-EEeecccccceeEeeecccccc-ceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCC--------
Confidence 99999 9999999999999999997763 33333 4567788888776 445555668999953321110
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....+...+ ...++|.++.|+|-.. +|..|-..|.-.|.=+..|
T Consensus 368 ~~~~pYm~H-~~~~~V~~l~FcP~ED-vLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 368 HGETPYMNH-RCGGPVEDLRFCPYED-VLGIGHAGGITSILVPGSG 411 (545)
T ss_pred CCCcchhhh-ccCcccccceeccHHH-eeeccccCCceeEeccCCC
Confidence 000111111 1234899999999776 6766666665555544443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=121.82 Aligned_cols=220 Identities=11% Similarity=0.095 Sum_probs=135.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEe---CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE-EecC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKT---SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV-SGSH 187 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~ 187 (406)
..+...+...+|+|+|.. ||..+ .+..|++|++..... ..+..+. ..+..++|+|+|+ .|+ +.+.
T Consensus 195 t~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~---~~~~~~~~SPDG~-~La~~~~~ 263 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAV------RQVASFP---RHNGAPAFSPDGS-KLAFALSK 263 (429)
T ss_pred ecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCe------EEccCCC---CCcCCeEECCCCC-EEEEEEcC
Confidence 345678999999999954 55433 245799999876321 1122222 3345689999998 555 4455
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCc--EEEEECCCCcccccccccCCCee
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQ--LMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+| .|.+||+.++.. ..+..+...+....|+|+ ++.|+.++ .++. |.++|+.+++. ..+........
T Consensus 264 ~g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 264 TGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred CCCcEEEEEECCCCCE-------EEccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 55 588899877532 122233446778899995 55554444 4444 44556665543 33333344556
Q ss_pred EEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc---EEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR---LMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~---i~iwd~~~~~~ 337 (406)
...|+|+|+.+++++..++ .|.+||+.++. ...+.. ........|+|+|+. |+.++.++. +.++++..
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~-~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G--- 407 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD-TFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG--- 407 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC-CCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC---
Confidence 7899999994444443333 58889988754 333332 123456789999985 666665654 56666643
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+.+|.+.+...+|+|-
T Consensus 408 ------------~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 ------------RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ------------CCeEECccCCCCcCCcccCCC
Confidence 233344567778899999984
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=122.58 Aligned_cols=221 Identities=13% Similarity=0.131 Sum_probs=135.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...|...+...+|+|++. .|+..+. ...|++|++..... ..+..+.+...+.+|+|+|+.++++.+.
T Consensus 199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~---------~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR---------ELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE---------EEeccCCCCccCceECCCCCEEEEEEeC
Confidence 345667899999999995 5665553 34699999976321 2233334445578999999844456566
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCc--EEEEECCCCcccccccccCCCee
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQ--LMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+| .|.+||+.++.. ..+..+.......+|+|+ ++.++.++ .+|. |.++|+.+++. ..+........
T Consensus 269 ~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~ 339 (433)
T PRK04922 269 DGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNA 339 (433)
T ss_pred CCCceEEEEECCCCCe-------EECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 65 589999877532 222334444567899995 55554444 4554 66677766553 22322333455
Q ss_pred EEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCc
Q 015484 263 YLSFNPYNEWVLATASS-DT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGD 337 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~ 337 (406)
.++|+|+|+ .++..+. ++ .|.+||+.++.. ..+. +........|+|+++.++++....+ .|.++++..
T Consensus 340 ~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g--- 412 (433)
T PRK04922 340 RASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG--- 412 (433)
T ss_pred CEEECCCCC-EEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC---
Confidence 789999999 5554443 33 699999976543 3333 2234556799999986555554433 466666643
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.....+..+.+.+...+|+|
T Consensus 413 ------------~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 ------------RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ------------CceEEcccCCCCCCCCccCC
Confidence 12222333445677788887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=113.88 Aligned_cols=275 Identities=17% Similarity=0.308 Sum_probs=183.8
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccC---------------------------
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQQD--------------------------- 154 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------------- 154 (406)
.|.|...+.+.-...|+.|+|.+++ ...++..+.|.+|++|.+........+
T Consensus 72 epEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v 151 (433)
T KOG1354|consen 72 EPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV 151 (433)
T ss_pred CcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee
Confidence 3556667777778899999999864 345667788999999998765443310
Q ss_pred CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc-----CccEEEEEeeCCCC
Q 015484 155 DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH-----ESVVEDVSWHLKNE 228 (406)
Q Consensus 155 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~p~~~ 228 (406)
...|...+ .+|+-.|.+|.++.++. .++++ .|=.|.+|+++-....-.+ ...+.+ ..-|++..|+|...
T Consensus 152 ea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnI---VDIKP~nmEeLteVITsaEFhp~~c 226 (433)
T KOG1354|consen 152 EASPRRVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNI---VDIKPANMEELTEVITSAEFHPHHC 226 (433)
T ss_pred eeeeeeeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeE---EEccccCHHHHHHHHhhhccCHhHc
Confidence 01111112 35777899999999888 77777 5789999999865432222 112222 34588899999999
Q ss_pred CEEEEEecCCcEEEEECCCCccc----ccc------------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQ----QRV------------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
+.|+-.+..|+|++.|+|..... +.+ ..--..|..+.|++.|+ ++++-+. -+|++||+....
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~ 304 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEA 304 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccC
Confidence 99999999999999999954321 111 11224578899999999 6765443 589999998777
Q ss_pred CCcEEecCCCC---------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC--------C
Q 015484 293 VPLHILSSHTE---------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP--------P 349 (406)
Q Consensus 293 ~~~~~~~~h~~---------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~ 349 (406)
.|+.+...|.. .-..++|+.++. .++||+....+++|++..+............+ +
T Consensus 305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~ 383 (433)
T KOG1354|consen 305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKL 383 (433)
T ss_pred CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCcccccccc
Confidence 78888777652 134688999887 59999999999999976544332222111111 1
Q ss_pred eeEEEecCC------------CCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 350 ELLFSHGGH------------KAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 350 ~~~~~~~~h------------~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
..+.....+ ...+...+|+|... .+|.+.. +.+.|+
T Consensus 384 ~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en-~ia~aat-nnlyif 431 (433)
T KOG1354|consen 384 RLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN-SIAVAAT-NNLYIF 431 (433)
T ss_pred eeeecCCCccccccccchhhhhhHHHhhccCCccc-eeeeeec-CceEEe
Confidence 111111111 22466678999988 6766654 456665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-13 Score=109.95 Aligned_cols=152 Identities=18% Similarity=0.373 Sum_probs=101.3
Q ss_pred eEEEecCCCCCeEEEecC---------CCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEE-EecCC
Q 015484 170 YGLSWSPFKEGYLVSGSH---------DNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGS-AGDDC 238 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~-~~~dg 238 (406)
..+.|++.|..+++.... -|...+|.++..... . ..+. ...++|.+++|+|.+..++++ |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~---~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--V---ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--c---ceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 367899988844444441 244666666443221 1 1121 234579999999954444333 34577
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.|.+||++ ++.+..+ ....++.+.|+|+|+ +|++++. .|.|.+||.++.+. +.... ...++.++|+|+|+
T Consensus 84 ~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~--~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKK-ISTFE--HSDATDVEWSPDGR 156 (194)
T ss_pred ccEEEcCc-ccEeEee--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEE-eeccc--cCcEEEEEEcCCCC
Confidence 99999997 5555555 356788999999999 6776654 46799999996543 44433 34579999999999
Q ss_pred CEEEEEeC------CCcEEEEeCCC
Q 015484 316 TVLASSAD------DRRLMVWDLNR 334 (406)
Q Consensus 316 ~~l~s~~~------dg~i~iwd~~~ 334 (406)
+ |+++.. |+.++||++..
T Consensus 157 ~-~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 157 Y-LATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred E-EEEEEeccceeccccEEEEEecC
Confidence 6 555543 88899999864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=108.80 Aligned_cols=244 Identities=15% Similarity=0.264 Sum_probs=160.2
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
-..|.-|.|..+.-.+|.....++.|.+|++.... -...+.....++.+++|||+|+..|.+...+-.|.+|
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce--------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 46778889998887778888889999999998742 2445666678899999999998788889999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------------------------------------CC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------------------------------------DC 238 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------------------------------------dg 238 (406)
.+.+.+. ..+...+..+..++|+| ++++.+.++. +.
T Consensus 120 SL~t~~~-------~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 120 SLNTQKG-------YLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred Eecccee-------EEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 9988542 11222234557777887 5555444332 12
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------------------
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV------------------------- 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------- 293 (406)
.+.+||.--.-.+..+ ...-.+..++|+|.++ +|++|+.|+.+++.+--+.+.
T Consensus 192 ~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~ 269 (447)
T KOG4497|consen 192 WLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI 269 (447)
T ss_pred EEEEecchhhheeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence 2334442211111111 1234678899999998 999999999888754221100
Q ss_pred --------------------------------C--cEEec------CCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEe
Q 015484 294 --------------------------------P--LHILS------SHTEEVFQVEWDPNHETVLASSAD--DRRLMVWD 331 (406)
Q Consensus 294 --------------------------------~--~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd 331 (406)
| +..++ .....+..++|+++.. +++|-.. -+.+-+||
T Consensus 270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wd 348 (447)
T KOG4497|consen 270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWD 348 (447)
T ss_pred hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEe
Confidence 0 11111 1223567799999985 5766543 25689999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++..+ ++..-....+|....|+|..+. |+.+.....+++|.++...
T Consensus 349 lq~l~---------------l~avLiQk~piraf~WdP~~pr-L~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 349 LQNLK---------------LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred chhhh---------------hhhhhhhccceeEEEeCCCCce-EEEEcCCceEEEEcCCCce
Confidence 98722 2222224567999999999885 4444445679999887653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=120.18 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=134.1
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeC-C--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTS-S--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+...+.+.+|+|++. .|+..+. + ..|++||+..+.. ..+....+.+.+.+|+|+|+.++++.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~---------~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR---------RVVANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE---------EEeecCCCCccceEECCCCCEEEEEEccC
Confidence 45778899999999995 5555543 2 3699999987421 22333344566899999998344567788
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC--CCCcccccccccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL--RTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~i~~ 266 (406)
|...+|.++.... .. ..+..+........|+|++..++++...+|...+|.+ .+++. ..+..........+|
T Consensus 262 g~~~Iy~~d~~~~--~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGS--GL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCC--Cc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEE
Confidence 8877776543211 11 2223344455677899954444444444566666654 44332 222222233456789
Q ss_pred cCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|+|+ .|+..+.++ .|.+||+..+.. ..+... .......|+|+++.++++....|.-.++-+...+
T Consensus 336 SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g------- 404 (427)
T PRK02889 336 SPDGK-LLAYISRVGGAFKLYVQDLATGQV--TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG------- 404 (427)
T ss_pred CCCCC-EEEEEEccCCcEEEEEEECCCCCe--EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-------
Confidence 99999 565555443 699999987542 333322 3446789999998766655555553344332211
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 405 ------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 ------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ------CceEEeecCCCCCCCCccCCC
Confidence 122223345566778888874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=115.37 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=129.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...|.+.+...+|+|++. .|+..+. +..|++|++.... ...+..+.+.+.+.+|+|+|+.++++.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQ---------RELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCc---------EEEeecCCCcccCcEECCCCCEEEEEEec
Confidence 446788999999999995 4555442 4689999997632 23344556677889999999844456666
Q ss_pred CCe--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCC--cEEEEECCCCcccccccccCCCee
Q 015484 188 DNK--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDC--QLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
+|. |.+||+.++.. ..+..+........|+|+ ++.++..+ .+| .|+++|+..++. ..+......+.
T Consensus 267 ~g~~~Iy~~d~~~~~~-------~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~ 337 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-------TRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS 337 (435)
T ss_pred CCCceEEEEECCCCce-------EEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence 665 66678776532 223334455677899995 55554444 333 588888776543 33433345567
Q ss_pred EEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 263 YLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
...|+|+|+ .|+..+.+ ..|.+||+.... ...+.. ...+....|+|+|+.+++++...+ .+.++|+..
T Consensus 338 ~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~--~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 338 TPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG--ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CeEECCCCC-EEEEEEcCCCceEEEEEECCCCc--eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 789999999 55554432 268888875533 233322 335678899999986555544332 467777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-11 Score=99.12 Aligned_cols=168 Identities=17% Similarity=0.276 Sum_probs=121.9
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--CCCCeeEEEecCCCCCeEEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s 184 (406)
..+..+....+|.++.+.++. |++.. .+.|+||...+.. +.++.+.. ......+++-..... +||.
T Consensus 86 ~~i~el~f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~~~~~~~k~-~Laf 153 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNP-------KLLHVIETRSNPKGLCSLCPTSNKS-LLAF 153 (346)
T ss_pred cEEEEEEeccceeeEEEcCCe---EEEEe-cCeEEEEEcCCCh-------hheeeeecccCCCceEeecCCCCce-EEEc
Confidence 346677788999999999854 55444 5679999998632 22232222 122233333222222 4443
Q ss_pred -ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccccccc--cCCC
Q 015484 185 -GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQRVKA--HEKE 260 (406)
Q Consensus 185 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~ 260 (406)
|-.-|.|.|-|+...... +......|.+.|.|++.+- .+.++|+++..|+ |||||..+++.++.+.. ....
T Consensus 154 Pg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred CCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 445699999999875432 2355678999999999996 7899999999987 78999999999888843 3467
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
|.+|+|+|+.. +||+++..|+++||.++...
T Consensus 229 iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEeCCCcc-EEEEEcCCCeEEEEEeecCC
Confidence 99999999999 99999999999999988643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-12 Score=113.03 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=154.3
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec------C-------------CCCCeEEEe
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS------P-------------FKEGYLVSG 185 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-------------~~~~~l~s~ 185 (406)
|....++|....||.++||+........+ ..|...+ ++..++..|. | .+...++-|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e--~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE--FAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee--eccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 33446899999999999999988654321 2233222 2344455552 1 122267888
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
...|.|.+|++..++.... ..-..|.+.|+++.++. .-..|.+++.|+.+..|+................+.+++
T Consensus 77 t~~g~v~~ys~~~g~it~~----~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAK----LSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC 151 (541)
T ss_pred cCCccEEEEEecCCeEEEE----EecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence 8899999999988754322 22246889999999985 678888999999999999999998888888889999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC-----CCCEEEEEeCCCcEEEEeCCCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN-----HETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+|++. .+++++ +.|++||+.+.+. +..|.+|.++|.+++|--. |.++|.+...+.-+.+|-+....
T Consensus 152 is~D~~-~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 152 ISPDGK-ILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EcCCCC-EEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 999998 888887 6799999999665 8999999999999999877 77778788888889999887633
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-11 Score=109.57 Aligned_cols=264 Identities=15% Similarity=0.181 Sum_probs=153.2
Q ss_pred eEEEEEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 106 VEIAQKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 106 ~~~~~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.++...+...+.+ ..+.|+|+++ ++.+++.||.|.++|+.+. +.+..+.. .....+++++++|+ ++++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~--------~~v~~i~~-G~~~~~i~~s~DG~-~~~v 94 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATG--------KVVATIKV-GGNPRGIAVSPDGK-YVYV 94 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSS--------SEEEEEE--SSEEEEEEE--TTT-EEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcc--------cEEEEEec-CCCcceEEEcCCCC-EEEE
Confidence 4456667655554 4477899995 5666788999999999984 33555554 34467899999999 6665
Q ss_pred e-cCCCeEEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCe
Q 015484 185 G-SHDNKICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEV 261 (406)
Q Consensus 185 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v 261 (406)
+ ...+.+.++|..+.+..+.+...... ......+..|..+|....++++.-+.+.|.+.|....+.+. .........
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 5 56899999999886543332211100 01234677787787444455555666889888977654432 222234567
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------- 294 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------- 294 (406)
....|+|++++++++...+..|-++|..+.+..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 788999999966665556667888887664310
Q ss_pred -------cEEecCCCCCeEEEEEcCCCCCEEEE---EeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-CCCCee
Q 015484 295 -------LHILSSHTEEVFQVEWDPNHETVLAS---SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-HKAKIS 363 (406)
Q Consensus 295 -------~~~~~~h~~~v~~i~~~p~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~ 363 (406)
+..+.....+ .-+.-+|+++++.+. +...+.|.++|..+. +.+..+.. ....+.
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------------~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------------KVVKTITPGPGKRVV 319 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------EEEE-HHHHHT--EE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------ceeEEEeccCCCcEe
Confidence 1111111222 456678999864444 355689999999872 33333321 123488
Q ss_pred eEEeCCCCCcEEEEEeCCC-cEEEEeCCCcccC
Q 015484 364 DFSWNKNDPWVISSVADDN-TVQVWQMTDSIYR 395 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~~~~ 395 (406)
.+.|+++|+++.+|.-..+ .|.|||..+....
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999998777776666 8999999886543
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=124.20 Aligned_cols=266 Identities=18% Similarity=0.347 Sum_probs=188.8
Q ss_pred hhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCC
Q 015484 25 PFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIP 104 (406)
Q Consensus 25 ~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 104 (406)
||---....|..+|....+||.|....+ ..++.|..- . -.|+.+..|.+ .
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~----------~wiVsts~q----k-aiiwnlA~ss~---------------~ 104 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKP----------YWIVSTSNQ----K-AIIWNLAKSSS---------------N 104 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCc----------eeEEecCcc----h-hhhhhhhcCCc---------------c
Confidence 3333445778899999999999865544 455555421 1 22455554411 1
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.++ ....+|...|+.+.|+|+.+.++|+++.|..|..||+... ..|......-......|+|+-..+ .+.+
T Consensus 105 aIe-f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp-------~~p~ys~~~w~s~asqVkwnyk~p-~vla 175 (1081)
T KOG0309|consen 105 AIE-FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP-------HRPFYSTSSWRSAASQVKWNYKDP-NVLA 175 (1081)
T ss_pred ceE-EEEecCccceeccccCCCCCcceeeccccccceeeeccCC-------CcceeeeecccccCceeeecccCc-chhh
Confidence 122 3467899999999999999999999999999999999983 445555555556678899998777 5555
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccccCCCeeE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNY 263 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~ 263 (406)
.+....|++||++.+.. ++..+++|...|+.+.|+..-...+.+++.||+|+.||-...... ........+|..
T Consensus 176 sshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR 250 (1081)
T ss_pred hccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence 66778899999998764 356677788999999998766677889999999999997654322 112234566777
Q ss_pred EEecCCCCcEEEEEeCC-CcEEE---------EeCCCCCCCcEEecCCCCCeEEEEEcCCC---------CCEEEEEeCC
Q 015484 264 LSFNPYNEWVLATASSD-TTVAL---------FDMRKMTVPLHILSSHTEEVFQVEWDPNH---------ETVLASSADD 324 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~d-g~i~v---------wd~~~~~~~~~~~~~h~~~v~~i~~~p~~---------~~~l~s~~~d 324 (406)
-.+-|.|+.+++--... ..+.+ |+..+...|++.+.+|...|....|-..+ ..-|+|-+.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 77777776443332221 13333 44444567899999999999888775432 2459999999
Q ss_pred CcEEEEeCCC
Q 015484 325 RRLMVWDLNR 334 (406)
Q Consensus 325 g~i~iwd~~~ 334 (406)
..+++|-+..
T Consensus 331 ~~lrlWpI~~ 340 (1081)
T KOG0309|consen 331 QTLRLWPIDS 340 (1081)
T ss_pred CceEeeeccH
Confidence 9999999865
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=116.58 Aligned_cols=235 Identities=17% Similarity=0.259 Sum_probs=165.0
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCcee------------------------------
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVI------------------------------ 205 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------ 205 (406)
......|..|.+.|..|.|+..|. .|++|+.|..|.+||....+....+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 344567889999999999999999 9999999999999997653211000
Q ss_pred ------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCC---CeeEEEec
Q 015484 206 ------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEK---EVNYLSFN 267 (406)
Q Consensus 206 ------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~v~~i~~~ 267 (406)
.....+..|.++|..++.-|....-|.+++.|+.+.-+|+++......+ ..+.. ..++++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 0012344688899999999999999999999999999999987664433 22333 57889999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCC-----cEEecCC------CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVP-----LHILSSH------TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~h------~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
|...+.+++|+.|..+++||.|..... +..+..| .-.|++++|+.++.-+| ++-.|-.|+++.-....
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEecccccc
Confidence 999889999999999999999864321 2333322 34699999997776544 55557788888443311
Q ss_pred cccccccccCCCCeeEEEecCCCC--CeeeEEe-CCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKA--KISDFSW-NKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
. ................+.||.. .|..+-| -|... ++++|+.-|.|.||+-.++.+
T Consensus 370 G-~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 370 G-SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred C-CCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHH
Confidence 1 0000000001112223677754 4777766 45666 699999999999999888743
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-12 Score=113.94 Aligned_cols=193 Identities=14% Similarity=0.305 Sum_probs=154.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee------C-------------CCCCEEEEEecCCcEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH------L-------------KNENLFGSAGDDCQLM 241 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~------p-------------~~~~~l~~~~~dg~i~ 241 (406)
++|....||.+++|+...++....+.+.... .+...+..|. | .+...++-|...|.|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 8999999999999999887654444333222 2333444442 1 1345678888999999
Q ss_pred EEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 242 IWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 242 i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
+|++..++....+ ..|.+.|+++.++.+-. .|.+++.|+.+..|+...... +.........+.+++.+|++. +++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee-eeeeccCCCccceEEEcCCCC-EEE
Confidence 9999999876666 56889999999998777 899999999999999987554 777888888999999999987 577
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC-----CCcEEEEEeCCCcEEEEeCCCccc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN-----DPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+++ +.|++||+++ .+.+..+.||.++|.+++|--. |.++|.+...+..+.+|.+....-
T Consensus 161 ~as--~~ik~~~~~~--------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 161 TAS--RQIKVLDIET--------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred ecc--ceEEEEEccC--------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence 775 5799999997 6888999999999999999877 788888888888999998877443
Q ss_pred C
Q 015484 395 R 395 (406)
Q Consensus 395 ~ 395 (406)
+
T Consensus 225 k 225 (541)
T KOG4547|consen 225 K 225 (541)
T ss_pred c
Confidence 3
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=105.11 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc----cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ----QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|+.+.+..+ ..|+++..++.+..+......... .....+...+..|+++-.+-+.+-.+. .++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 555555543 356666666555554443321111 013445666666666655555555565 7999999999999
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEe-----cCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAG-----DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
++.+..... ...... |.+ -.+.+... .++++.++. .-+..+.|+++..+....-......|.+++-+
T Consensus 116 ~s~~~~~~~-----~~~i~~~~~~-~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 116 FSTDKDLAL-----MSRIPSIHSG-SASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred EechHHHhh-----hhhccccccc-ccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 998762110 011111 111 11111111 233333322 23456677777654433222233449999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
|..++++++|+.||.+.+||.|+...|...+..|+.++..+.|+|..+.-|.++++||.+..||...
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9988899999999999999999998889999999999999999998877799999999999999874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-11 Score=100.72 Aligned_cols=231 Identities=17% Similarity=0.266 Sum_probs=153.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----- 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----- 188 (406)
-+.++..++|+|+|+.+|.+...+-.|.||.+.+.. ...++..+..+..++|+|+|+ +.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------GYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDY 159 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccce---------eEEecccccCceeEEECCCCc-eeeeeecccHHHH
Confidence 457899999999999999999999999999998832 223344455678889999888 66655432
Q ss_pred -------------------------------CeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEec
Q 015484 189 -------------------------------NKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 189 -------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
..+.+||--- . ...+.-+ .-.+..++|+| .+.+++.|+.
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-------e-ykv~aYe~~lG~k~v~wsP-~~qflavGsy 230 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-------E-YKVYAYERGLGLKFVEWSP-CNQFLAVGSY 230 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-------h-heeeeeeeccceeEEEecc-ccceEEeecc
Confidence 1122332110 0 0111112 34688899999 7899999999
Q ss_pred CCcEEEEECCCCcc------------------------------------------------------------cccc--
Q 015484 237 DCQLMIWDLRTNQT------------------------------------------------------------QQRV-- 254 (406)
Q Consensus 237 dg~i~i~d~~~~~~------------------------------------------------------------~~~~-- 254 (406)
|+.+|+.+--+-+. +..+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99988754211000 0000
Q ss_pred ----cccCCCeeEEEecCCCCcEEEEEeCC--CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 255 ----KAHEKEVNYLSFNPYNEWVLATASSD--TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 255 ----~~~~~~v~~i~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
......+--++|+++.. ++++-... ..+-+||+++.+ +...-....+|....|+|..+. |+.+.....++
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk~piraf~WdP~~pr-L~vctg~srLY 386 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLK--LHAVLIQKHPIRAFEWDPGRPR-LVVCTGKSRLY 386 (447)
T ss_pred CCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhh--hhhhhhhccceeEEEeCCCCce-EEEEcCCceEE
Confidence 01123355689999886 66655432 378999999755 4444456788999999999986 66666677799
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
+|.... +..+... +..-.|.++.|.-.|. .++-.+.|..
T Consensus 387 ~W~psg--------------~~~V~vP-~~GF~i~~l~W~~~g~-~i~l~~kDaf 425 (447)
T KOG4497|consen 387 FWAPSG--------------PRVVGVP-KKGFNIQKLQWLQPGE-FIVLCGKDAF 425 (447)
T ss_pred EEcCCC--------------ceEEecC-CCCceeeeEEecCCCc-EEEEEcCCce
Confidence 998764 2222222 2224599999999999 5777777764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=121.00 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=153.5
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|....+.-... .++.+..+..+.+||...+.....+.+-.. .--....-+.+++ ..-++++|+.-+.|.+|+....
T Consensus 90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er--~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDER--CTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCce--EEEEeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence 33344444455 788888899999999877543221111000 0001111223444 5677889999999999998844
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
+....+.+|.+.+.++.|+-+|. ++++.+.|.++++|++.+.+.......+|+..|..++|.|. .++|++.|.+.+
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred CCcceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 43345789999999999999999 99999999999999999988766678899999999999998 499999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
+|+... ..+..+.+|. ..|..++..+... +++|++.|+.+++|++.....+..
T Consensus 242 vW~~~~---------------~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 242 VWGVNG---------------TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred EEeccc---------------ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccccc
Confidence 997654 2233555564 3588999998887 799999999999999988776543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-09 Score=93.54 Aligned_cols=294 Identities=11% Similarity=0.133 Sum_probs=186.5
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC--CCe
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS--SCE 139 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~--dg~ 139 (406)
+.+++||.+-.. ..-|+++.+.-+ .+++...++..+.+.++-++|+|+++.+.+.... +|.
T Consensus 3 ~~~YiGtyT~~~-s~gI~v~~ld~~----------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg 65 (346)
T COG2706 3 QTVYIGTYTKRE-SQGIYVFNLDTK----------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG 65 (346)
T ss_pred eEEEEeeecccC-CCceEEEEEeCc----------------ccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCc
Confidence 478899998443 356777766632 1445566677888999999999998544433333 577
Q ss_pred EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEEEEeCCCccCCceeeeeeeeeccCcc-
Q 015484 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKICLWDVSALAQDKVIDAMHVYEAHESV- 217 (406)
Q Consensus 140 i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~- 217 (406)
|.-|.+....... ..+........+-+-++++++++ +|+++.. .|.|.++-++....... ......|.+.
T Consensus 66 vaay~iD~~~G~L----t~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~ 137 (346)
T COG2706 66 VAAYRIDPDDGRL----TFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSG 137 (346)
T ss_pred EEEEEEcCCCCeE----EEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCC
Confidence 8888887631111 11111111223337899999998 7777755 58999999876422111 1111223333
Q ss_pred ---------EEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccc---cccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 218 ---------VEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 218 ---------i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
+....+.| +++++++.. .--.|.+|++..++....- -.....-+.|.|+|+++...++.--+++|.
T Consensus 138 p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 138 PHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred CCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEE
Confidence 77888999 566665553 2336999999977653221 123455688999999996566666789999
Q ss_pred EEeCCCCCCCcEEecC---------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 285 LFDMRKMTVPLHILSS---------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~---------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|........+..++. .......|..+|+|+.+.++--....|.+|.+...+.. ..++...
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~----------L~~~~~~ 286 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK----------LELVGIT 286 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE----------EEEEEEe
Confidence 9998874222222221 23467889999999854444444568888888763321 2333344
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..+.....++.+++.+++++++.-.+..|.+|..+.
T Consensus 287 ~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 445555789999999996665555556789987654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=109.32 Aligned_cols=218 Identities=14% Similarity=0.145 Sum_probs=130.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CC--eEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DN--KICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|..... ...+..+...+.+..|+|+|+ .|+..+. ++ .|.+||+.+++.. .+.. ..
T Consensus 199 ~l~i~d~dG~~---------~~~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~----~lt~---~~ 261 (448)
T PRK04792 199 QLMIADYDGYN---------EQMLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVRE----KVTS---FP 261 (448)
T ss_pred EEEEEeCCCCC---------ceEeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeE----EecC---CC
Confidence 56666765521 234555677888999999998 6665543 33 5888888775321 1111 12
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCc--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQ--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKM 291 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 291 (406)
.......|+|++..++++.+.+|. |.++|+.+++. ..+..+.......+|+|+++.++++...++ .|.++|+.++
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 234467899965556556666775 77888887654 334334455677899999995555554444 4666677654
Q ss_pred CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE--EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV--WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+ ...+..........+|+|+++.++++...++...| +|+.... ...+ ... .......|+|
T Consensus 341 ~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~------------~~~l---t~~-~~d~~ps~sp 402 (448)
T PRK04792 341 K--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA------------MQVL---TST-RLDESPSVAP 402 (448)
T ss_pred C--EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC------------eEEc---cCC-CCCCCceECC
Confidence 4 23332223334557999999875555555554444 5655421 1111 111 1123458999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+|+.++.+...++. +.+++.+.+
T Consensus 403 dG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 403 NGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC
Confidence 99977776666655 666676544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-11 Score=106.20 Aligned_cols=244 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee
Q 015484 131 VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV 210 (406)
Q Consensus 131 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 210 (406)
+++-..+|.|.|.|..+. +.+..+......-..+.++|+++ ++++++.||.|.++|+.+.+.. ..
T Consensus 9 ~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v------~~ 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVV------AT 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEE------EE
T ss_pred EEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEE------EE
Confidence 455667899999999873 33566665444434578999998 8888889999999999987532 22
Q ss_pred eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-------cCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 211 YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-------HEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 211 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
+.. .....++++++++..++++....+.+.++|.++.+.++.+.. ....+..+..+|..+.++++.-..+.|
T Consensus 74 i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 74 IKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred Eec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 332 445788999985444444556899999999999988877632 234677888888887444444455789
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-------------------
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA------------------- 344 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------- 344 (406)
.+.|......+...............|+|++++++++......|-++|......... .+.
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-IDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-EE-SSSBEETTEEEEEETTTEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-eeccccccccccccccCCCcce
Confidence 999988765433333334567889999999998777777788898998776322110 000
Q ss_pred -----------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE---EeCCCcEEEEeCCCc
Q 015484 345 -----------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISS---VADDNTVQVWQMTDS 392 (406)
Q Consensus 345 -----------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s---~~~dg~i~iw~~~~~ 392 (406)
.....+.+......... .-+..+|+++++.+. +...+.|.++|..+-
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 00111223333332333 567789999976655 456688999999876
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-11 Score=111.85 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=129.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+...+...+|+|+|..++.+...++ .|++||+..... ..+..........+|+|+|+.++++.+.+|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------EKVTSFPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---------EEecCCCCCcCCeeECCCCCEEEEEEeCCC
Confidence 345567788999999965444433333 588888876321 112222233457899999984444566677
Q ss_pred e--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEE
Q 015484 190 K--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
. |.++|+.++.. ..+..+.......+|+|++..++++...++ .|.++|+.+++... +..........+
T Consensus 285 ~~~Iy~~dl~tg~~-------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~ 356 (448)
T PRK04792 285 QPEIYVVDIATKAL-------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGS 356 (448)
T ss_pred CeEEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCee
Confidence 5 67777766432 222234445667899995544555544444 46667777665432 221222334578
Q ss_pred ecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~ 341 (406)
|+|+|+.++++...++ .|.++|+.++. ...+... .......|+|+++.++++...+|. +.+++...
T Consensus 357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G------- 426 (448)
T PRK04792 357 ITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG------- 426 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-------
Confidence 9999995555444455 45557777654 2333322 122345899999876666666665 55556532
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 427 --------~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 --------RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred --------CceEECcCCCCCcCCCccCCC
Confidence 222223334456777888873
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=109.29 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=136.3
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeecc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
..|.++|.... ....+..+...+...+|+|+|+ +|+.++.+ ..|.+||+.++.. ..+..+
T Consensus 170 ~~l~~~d~~g~---------~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~ 232 (417)
T TIGR02800 170 YELQVADYDGA---------NPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQR-------EKVASF 232 (417)
T ss_pred ceEEEEcCCCC---------CCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCE-------EEeecC
Confidence 35777777542 1344556677788999999998 77766543 4799999987532 112234
Q ss_pred CccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRK 290 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~ 290 (406)
...+.+++|+|++..++++.+.++ .|++||+.++... .+..+........|+|+++.++++....+ .|+++|+..
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 455667899995555555555544 5888998876543 33334444557789999984444444444 577778775
Q ss_pred CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 291 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
.. ...+..+...+....|+|+++. ++.++.++ .|.+||+..... ..+ ... .......|
T Consensus 312 ~~--~~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~-~~~~~p~~ 372 (417)
T TIGR02800 312 GE--VRRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE------------RVL---TDT-GLDESPSF 372 (417)
T ss_pred CC--EEEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe------------EEc---cCC-CCCCCceE
Confidence 43 3445555667788899999985 55555554 688888765111 111 111 12345689
Q ss_pred CCCCCcEEEEEeCCC--cEEEEeCCCc
Q 015484 368 NKNDPWVISSVADDN--TVQVWQMTDS 392 (406)
Q Consensus 368 s~~~~~~l~s~~~dg--~i~iw~~~~~ 392 (406)
+|++++++++...++ .+.+.+....
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 999996555554443 3555555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=106.98 Aligned_cols=226 Identities=14% Similarity=0.155 Sum_probs=129.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe--EEEecCCC--eEEEEeCCCccCCceeeeeeeeec
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY--LVSGSHDN--KICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.|.+.|..... ...+......+..-+|+|+|+.. +++...+| .|.+.++..+... . +. .
T Consensus 165 ~~l~~~d~dG~~---------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~---lt---~ 228 (428)
T PRK01029 165 GELWSVDYDGQN---------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K---IL---A 228 (428)
T ss_pred ceEEEEcCCCCC---------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E---ee---c
Confidence 356676765521 22344445566778999999742 22444444 5777787765431 1 12 2
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCc--ccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQ--TQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~--~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
..+.....+|+|++..++++...+| .+.+|++..+. ....+ ..........+|+|+|+.++++...+|...+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 2334456789995545554443333 34446766531 12222 22223446789999999444444456655555
Q ss_pred --eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 287 --DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 287 --d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
++.........+..+...+....|+|+|+.++.++..+ ..|.+||+..... .. +......+
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------~~---Lt~~~~~~ 373 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------YQ---LTTSPENK 373 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------EE---ccCCCCCc
Confidence 44322222444555556778899999998654444443 3688999876321 11 11122346
Q ss_pred eeEEeCCCCCcEEEEEeC--CCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDPWVISSVAD--DNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~--dg~i~iw~~~~~~~ 394 (406)
....|+|+|+++++++.. ...|.++++.++..
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 778999999976656543 34688888877744
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=101.04 Aligned_cols=204 Identities=15% Similarity=0.193 Sum_probs=150.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.+.+++++.+.+.. ..|.+|-..|++.=+.+...-. ..........|...+..+-|+-... .+++.+.|..+.-
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn----km~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~ 140 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN----KMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAW 140 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh----hcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEE
Confidence 45789999999988 6799999999999998876433 2344566778999999999998777 8999999987764
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC--CCcccccccccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR--TNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
--.+.+...... .+ ....+++.+.- . +...|...|.|.+..+. .-..+.++.+|...+.+++|.|...
T Consensus 141 hc~e~~~~lg~Y----~~---~~~~t~~~~d~--~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~ 210 (404)
T KOG1409|consen 141 HCTESGNRLGGY----NF---ETPASALQFDA--L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR 210 (404)
T ss_pred EeeccCCcccce----Ee---eccCCCCceee--E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc
Confidence 444443321110 00 11122222221 1 33455566666655443 3345677789999999999999877
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+|++|..|..+.+||+...+.....+.+|...|..+...+.-+ .+.+++.||.|.+|+++..
T Consensus 211 -~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 211 -LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 9999999999999999877766778899999999998888776 4889999999999998764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-10 Score=105.73 Aligned_cols=224 Identities=14% Similarity=0.197 Sum_probs=131.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEe-CC--CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKT-SS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+...+...+|+|++.. |+..+ .+ ..|++|++.+... ..+....+.+...+|+|+|+.++++.+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~~---------~~l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKR-IAYVSFEQKRPRIFVQNLDTGRR---------EQITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred EecCCCceeeeeECCCCCE-EEEEEcCCCCCEEEEEECCCCCE---------EEccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 4467788999999999954 54444 32 3689999976422 1222233345578999999833345555
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeE
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+| .|.+||+.++.. ..+..+........|+|++..++++...+| .|+++|+.+++.. .+.........
T Consensus 264 ~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~ 335 (430)
T PRK00178 264 DGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNAR 335 (430)
T ss_pred CCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccc
Confidence 55 578888877532 122234444566789995555555544444 5777788776642 22212223345
Q ss_pred EEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCCCCCccc
Q 015484 264 LSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLNRIGDEQ 339 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 339 (406)
..|+|+++.++++...++ .|.++|+.++.. ..+.. ........|+|+|+.++++...+|. +.++++..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g----- 407 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING----- 407 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-----
Confidence 789999994444443344 588889887543 33322 2223356899999876666655554 45555532
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+..+.+.+...+|+|-
T Consensus 408 ----------~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 ----------RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------CceEECcCCCCCcCCCccCCC
Confidence 111122233445677788874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-10 Score=109.24 Aligned_cols=218 Identities=12% Similarity=0.097 Sum_probs=132.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---CeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|.++|.... ....+..+...+...+|+|+|+ .|+..+.+ ..|.+|++.++... .+....
T Consensus 180 ~l~~~d~~g~---------~~~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~-------~l~~~~ 242 (430)
T PRK00178 180 TLQRSDYDGA---------RAVTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRRE-------QITNFE 242 (430)
T ss_pred EEEEECCCCC---------CceEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEE-------EccCCC
Confidence 4677777652 1344556777889999999998 76655433 36889999876421 112223
Q ss_pred ccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKM 291 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 291 (406)
+.+....|+|++..++++...+| .|+++|+.+++.. .+..+........|+|+++.++++...+| .|+++|+..+
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34556899995555555665555 5888899877643 34434455667899999995555544444 5777777665
Q ss_pred CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 292 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+. ..+...........|+|+++.++++...++ .|.+||+..... ..+. .. .......|+|
T Consensus 322 ~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------~~lt-~~---~~~~~p~~sp 383 (430)
T PRK00178 322 RA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------RILT-DT---SLDESPSVAP 383 (430)
T ss_pred CE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------EEcc-CC---CCCCCceECC
Confidence 42 222222233456789999986555544444 477888765221 1111 11 1223568999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+|++++++...++. |.++++..+
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC
Confidence 99976666655443 666666544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-11 Score=110.05 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=124.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSS---CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+...+...+|+|++. .|+.+... ..|++|++.+.. ...+..+...+.+++|+|+++.++++.+.
T Consensus 185 l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred eecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECC
Confidence 345666788999999995 55555433 479999997632 12233455566789999999844455555
Q ss_pred CC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeE
Q 015484 188 DN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 188 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
++ .|.+|++.++.. ..+..+........|+|++..++++...++ .|.++|+.+++. ..+..+...+..
T Consensus 255 ~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~ 326 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNAS 326 (417)
T ss_pred CCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccC
Confidence 54 588888876532 122223344456789984444444443343 577888876653 333334556778
Q ss_pred EEecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeC
Q 015484 264 LSFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDL 332 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~ 332 (406)
+.|+|++. +++.++.++ .|.+||+.+.. ...+... .......|+|+++.++++...++. +.+.+.
T Consensus 327 ~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 327 PSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG--ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eEECCCCC-EEEEEEccCCceEEEEEeCCCCC--eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 89999998 666666554 78889987643 2333322 234556899999865555544443 444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=128.40 Aligned_cols=189 Identities=17% Similarity=0.346 Sum_probs=146.4
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-..|.++.-+|..+ +.+||+.||.|++|...... ++..++ ..+..|+.+.|+.+|+ .+..+..||.+.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~--------~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQ--------QVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLS 2276 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCC--------eEEEeeccCcchhhhhhhcccCC-ceeeeccCCcee
Confidence 346788888899885 57799999999999988732 233332 2338899999999998 899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCccc-ccccccCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i~~~~ 268 (406)
+|.+.. ++....+.|.....++.|-. .++++++ .++.+.+||..-.... ..-..|.+.++++++.|
T Consensus 2277 l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2277 LWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP 2346 (2439)
T ss_pred ecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC
Confidence 999873 23455677888999999873 6666654 6789999997643221 11278999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..+ +|++|+.+|.|++||+|..+. ++.+.. ++ .. .++++|+..|.++||++...
T Consensus 2347 ~~q-llisggr~G~v~l~D~rqrql-~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2347 KHQ-LLISGGRKGEVCLFDIRQRQL-RHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cce-EEEecCCcCcEEEeehHHHHH-HHHhhh---------hh-hh-heeeccCcccceEEEEcccc
Confidence 998 999999999999999997443 444433 44 33 36999999999999999874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=103.54 Aligned_cols=242 Identities=15% Similarity=0.243 Sum_probs=156.9
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC-eEEE-----ecCCCeEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVS-----GSHDNKIC 192 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s-----~~~dg~i~ 192 (406)
++..|+++.. +++--..+.+++|++.+- ..+.. .-|...|..+.+||.+.. .+|+ ++.-+.|+
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f-------~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSF-------KTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCc-------cceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence 6788888773 444455678999999872 11122 336778999999996433 3433 35567899
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-----------CCcEEEEECCCCcccccccccCCCe
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-----------DCQLMIWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v 261 (406)
||..........+.. +.| ....=..+.|++.+..+|+.++. ...+++.++........+. ..++|
T Consensus 198 i~~~~~~~~~~~~a~-ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPV 273 (566)
T KOG2315|consen 198 IYKYPEEGQHQPVAN-KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPV 273 (566)
T ss_pred Eeccccccccchhhh-ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCc
Confidence 998874332222211 111 12223356788766666655543 2368888888444444443 57899
Q ss_pred eEEEecCCCCcEEEE-EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLAT-ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~ 338 (406)
.++.|+|++..+.++ |-.--.+.|||++. .++.. ...++=+++-|+|.|+.++++|-. -|.|-|||+.+
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---- 345 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---- 345 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc----
Confidence 999999999733333 33345899999985 33433 346788999999999865555433 58899999987
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC-----CCcEEEEeCCCcccC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD-----DNTVQVWQMTDSIYR 395 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~-----dg~i~iw~~~~~~~~ 395 (406)
.+++..+.. ..-+-+.|+|+|++++.+.+. |+.++||++...++.
T Consensus 346 ----------~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 346 ----------RKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ----------hhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 233333332 234567999999975555443 889999999988653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-11 Score=100.27 Aligned_cols=256 Identities=18% Similarity=0.278 Sum_probs=183.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+..+|.+.|+....-|..+ -+.+.+.|.+++||--.+.. +.-|.. ...-..+++++.+.+... .|+.|-..
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~-----q~wpsI-~~~mP~~~~~~~y~~e~~-~L~vg~~n 89 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSG-----QYWPSI-YHYMPSPCSAMEYVSESR-RLYVGQDN 89 (404)
T ss_pred hhhcCchhhhhhheeccCCC-CeEEccccceeeeEEecccc-----ccCchh-hhhCCCCceEeeeeccce-EEEEEEec
Confidence 34457888899888888664 38889999999999765532 122211 112346789999998777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|++.-+.+...- ..+...+.+..|...+..+.|+. ....+++.+.|..+.---.+.+..+..+.. ....+++.+.-
T Consensus 90 gtvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~ 165 (404)
T KOG1409|consen 90 GTVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA 165 (404)
T ss_pred ceEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee
Confidence 999988765421 11233456677999999999986 577888889888776555555554433210 11111122211
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC-CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKM-TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
. +...|...|.|.+-.+... -.++.++.+|.+.+.+++|.|..+ +|.+|..|..+.+||+...
T Consensus 166 ~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~------------ 229 (404)
T KOG1409|consen 166 L---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGR------------ 229 (404)
T ss_pred E---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCC------------
Confidence 1 4455666677766555432 345888999999999999999886 7999999999999999752
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
........+|...|..+..-+.-+ .+.+++.||.|.+|+.+....
T Consensus 230 -~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 230 -KGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred -cceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence 345567788999999998887777 688999999999999987654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.6e-10 Score=102.34 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=118.9
Q ss_pred cCCceeEEEEcCCCCc--EEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE-ecCC
Q 015484 114 VDGEVNRARCMPQKPN--LVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS-GSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~d 188 (406)
....+..-+|+|+|.. ++.+...+| .|++.++..+. . ..+....+.....+|+|+|+ .|+. ...+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~------~---~~lt~~~g~~~~p~wSPDG~-~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA------G---KKILALQGNQLMPTFSPRKK-LLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC------c---eEeecCCCCccceEECCCCC-EEEEEECCC
Confidence 4455677799999865 323444443 57777887632 1 22233334455789999998 5554 4333
Q ss_pred C----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEE--ECCC-CcccccccccCCCe
Q 015484 189 N----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW--DLRT-NQTQQRVKAHEKEV 261 (406)
Q Consensus 189 g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~--d~~~-~~~~~~~~~~~~~v 261 (406)
| .+..|++..+..... ..............+|+|++..++++...+|...+| ++.. +.....+......+
T Consensus 253 g~~di~~~~~~~~~g~~g~~---~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKP---RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred CCcceeEEEeecccCCCCcc---eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc
Confidence 3 344467665321111 111122223345679999544455454456655555 4432 22233343344566
Q ss_pred eEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCC
Q 015484 262 NYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNR 334 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~ 334 (406)
....|+|+|+.++++...+| .|.+||+.+++. ..+......+....|+|+++.+++++... ..|.++|+..
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 78899999994444444333 699999987653 34443344677899999998655555443 4577778765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-11 Score=106.77 Aligned_cols=208 Identities=13% Similarity=0.169 Sum_probs=152.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..-..++++...-.++++| ....|+-++++.+ .-+..+....+++++|..++... +|++|+.+|.|..||
T Consensus 134 ~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG--------rfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG--------RFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWD 203 (703)
T ss_pred cCCccccccCCCccEEEee-cCcceEEEEcccc--------ccccccccccccceeeeecCccc-eEEecccCceEEEec
Confidence 3455667766554544444 4456888888874 22444555668999999999887 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCc-----cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCC
Q 015484 196 VSALAQDKVIDAMHVYEAHES-----VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY 269 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~ 269 (406)
.+.......+........|.+ .|+++.|+. ++-.+++|+.+|.+.|||+|+.+++..- ....-+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 988655444444333334443 499999995 5888999999999999999998876544 445678999999776
Q ss_pred CC-cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 270 NE-WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 270 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+. ..+++. ....++|||-.+++. ...+.. ...++.+++-|++. ++.++-.++.+..|=+...+..
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCc-eeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccCCC
Confidence 33 245544 346899999988765 555544 45699999999986 7999999999988888775543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-11 Score=98.52 Aligned_cols=270 Identities=16% Similarity=0.238 Sum_probs=167.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC------------CCeeEEEecCC-CCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD------------KEGYGLSWSPF-KEGY 181 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~-~~~~ 181 (406)
...|+++.|...| .+|++|...|.|.+|....... ...+-...+++|. ..|..+.|..+ +.+.
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 4568899998888 7899999999999998776431 1122234455554 35788888764 4446
Q ss_pred EEEecCCCeEEEEeCCCccCC----------------------ce--------------eeeeeee-eccCccEEEEEee
Q 015484 182 LVSGSHDNKICLWDVSALAQD----------------------KV--------------IDAMHVY-EAHESVVEDVSWH 224 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~----------------------~~--------------~~~~~~~-~~~~~~i~~i~~~ 224 (406)
++..+.|.+|++|.+...... +. ..+.+.+ ..|..-|+++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 667779999999988653100 00 0111222 4577889999998
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCccccc---cccc-----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC--
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQR---VKAH-----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-- 294 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~-----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-- 294 (406)
. +...++ ...|-.|.+|++.-...... ++.| ..-|++..|+|...+++.-.+..|.|++-|+|.....
T Consensus 182 s-D~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 182 S-DKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred C-chheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 6 444443 45677899999875433222 2222 3458889999988778888888999999999953211
Q ss_pred -------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 295 -------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 295 -------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...+..-...|..+.|+++|++ +++-+ --+|+|||.+....+.........-...+.... ....
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y-EnDa 336 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY-ENDA 336 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEEec-cceEEEEecccccCCceeechHHHHHHHHHhhh-hccc
Confidence 1112223357889999999974 55444 568999999875443322111000000000000 0122
Q ss_pred e---eeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 362 I---SDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 362 v---~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
| ..+.|+.+.+ -+.+|+..+..-||-+.+.-.
T Consensus 337 ifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 337 IFDKFEISFSGDDK-HVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred eeeeEEEEecCCcc-cccccccccceeeeccccCCC
Confidence 2 3467787777 477888777777776544433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-09 Score=107.20 Aligned_cols=266 Identities=10% Similarity=0.104 Sum_probs=161.5
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc----eee-eCCCCCeeEEEecCCCCCeEEEe-cCCCeEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD----LRL-KGHDKEGYGLSWSPFKEGYLVSG-SHDNKIC 192 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~-~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~ 192 (406)
..+++.+.+..++++-+.++.|+++|.........+..... -.+ ..+-....+|++.+++. .|+.+ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EEEEEeCCCceEE
Confidence 45788876556788888889999999865321110000000 000 00112347899998776 55554 4457899
Q ss_pred EEeCCCccCCceeeeee----eeecc-------CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc--------
Q 015484 193 LWDVSALAQDKVIDAMH----VYEAH-------ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-------- 253 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~----~~~~~-------~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------- 253 (406)
++|+.++.. ..+.... .+.+. -.....++++|.++.++++.+.++.|++||..++.....
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999876421 1110000 00000 112457899987778888888899999999876543210
Q ss_pred ccc------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE------------EecC--------CCCCeEE
Q 015484 254 VKA------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH------------ILSS--------HTEEVFQ 307 (406)
Q Consensus 254 ~~~------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~--------h~~~v~~ 307 (406)
..+ .-.....|+++|++..++++-+.++.|++||+.++...+. .+-. .-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 1123467999999886666777788999999986442110 0000 0113468
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-----cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA-----EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
++++++|. ++++-..+++|++||........ .... .++. ...+.-.....++++++|+ ++++-+.++
T Consensus 809 vavd~dG~-LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~-----~~~a~l~~P~GIavd~dG~-lyVaDt~Nn 880 (1057)
T PLN02919 809 VLCAKDGQ-IYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGK-----ALKAQLSEPAGLALGENGR-LFVADTNNS 880 (1057)
T ss_pred eeEeCCCc-EEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCc-----ccccccCCceEEEEeCCCC-EEEEECCCC
Confidence 89999996 78888889999999987522110 0000 0000 0112234578899999998 788888899
Q ss_pred cEEEEeCCCccc
Q 015484 383 TVQVWQMTDSIY 394 (406)
Q Consensus 383 ~i~iw~~~~~~~ 394 (406)
.|++|++.++..
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-09 Score=93.45 Aligned_cols=235 Identities=11% Similarity=0.151 Sum_probs=147.0
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----CCeEEEEeCCCccCCceeeeeeeeec
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH----DNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.|++|++..... ......... -......++++|+++ +|.++.. +|.|..|.+.... ..+..+.....
T Consensus 13 ~gI~~~~~d~~~g----~l~~~~~~~-~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETG----TLTLVQTVA-EGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp TEEEEEEEETTTT----EEEEEEEEE-ESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CcEEEEEEcCCCC----CceEeeeec-CCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc--ceeEEeeeecc
Confidence 6899998844221 111122221 234456789999888 7777765 5799999987642 22333344443
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccc---cc----------ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQR---VK----------AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~---~~----------~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
.......++++|++..++++...+|.|.++++... ..... +. .......++.++|+++.++++.-.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 44556678999954445554557999999999873 32211 10 123456789999999955544444
Q ss_pred CCcEEEEeCCCCCCCcE---Ee-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 280 DTTVALFDMRKMTVPLH---IL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~---~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
...|.+|++......+. .+ .........+.|+|+++.+.++.-.++.|.++++....... ..+...
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~----------~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL----------TEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE----------EEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce----------eEEEEe
Confidence 55899999986552222 12 23446789999999998777777789999999988322111 111111
Q ss_pred c----C--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 356 G----G--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 356 ~----~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. + .......++++|+|++++++....+.|.+|+++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 1 1 122578899999999888888888999999994
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=106.19 Aligned_cols=255 Identities=16% Similarity=0.270 Sum_probs=175.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-------CCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-------DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+......|+.|+... .++|+|+.||.++|..+.+...... .....-.++.||+..|.-+.|+.... .|-|.
T Consensus 12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 345678899999977 6899999999999999876433221 12223456889999999999998877 89999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccccCCCeeEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNYL 264 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~i 264 (406)
..+|.|.+|-+-++.--..+ .....++.|.+++|+. ++..++....||.|.+=.+...+.. +.++ ......+
T Consensus 90 Dt~GlIiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv 162 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEM----INNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHV 162 (1189)
T ss_pred CCCceEEEEeeecccHHHHH----hhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcc--hheccce
Confidence 99999999998776422111 1123567899999997 6788888899999888776644321 1122 2334578
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCC------C-c---EEecCCCCCeEEEEEc--------CCCCCEEEEEeCCCc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTV------P-L---HILSSHTEEVFQVEWD--------PNHETVLASSADDRR 326 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~-~---~~~~~h~~~v~~i~~~--------p~~~~~l~s~~~dg~ 326 (406)
.|+++.+ .++.+-..|.+.+||....-. . + ..+......|..+.|. |+.+ .|+.+-..|.
T Consensus 163 ~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGR 240 (1189)
T ss_pred eecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCce
Confidence 9999988 666777889999999764211 0 0 1111222346667774 4565 5899999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---------CcEEEEeCCCccc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---------NTVQVWQMTDSIY 394 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---------g~i~iw~~~~~~~ 394 (406)
+.|-.-.+. +.++..-.| -.|.++.|+++|. +|+.+|.| +.|++|.+-..++
T Consensus 241 ~QiMR~eND-------------~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~G~i~ 301 (1189)
T KOG2041|consen 241 MQIMRSEND-------------PEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPYGHIV 301 (1189)
T ss_pred ehhhhhcCC-------------CCCeEEecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEeccchhhe
Confidence 888654431 122222222 4588999999999 78887765 3577776655443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-10 Score=107.53 Aligned_cols=195 Identities=18% Similarity=0.286 Sum_probs=146.5
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCe-----eEEEecCCCCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEG-----YGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
|....+.-.. ..++.++.+..+.+||........ .. .+...+ .-+.++++.= ++++|+.-+.|.
T Consensus 90 i~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~--------~i-~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~ii 158 (967)
T KOG0974|consen 90 IFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLS--------KI-QSDERCTLYSSLIIGDSAEEL-YIASGSVFGEII 158 (967)
T ss_pred ccccchhhhc-ceEEEEEcCceEEEEecccCceeh--------hc-CCCceEEEEeEEEEeccCcEE-EEEeccccccEE
Confidence 3334444444 467888888899999988743211 11 122211 1223344333 899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~ 271 (406)
+|+....+.. ..+.+|.+.|.++.|+. ++++++++++|.++|+|++.+.+... ..-+|...|..+.|+|+
T Consensus 159 vW~~~~dn~p------~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 159 VWKPHEDNKP------IRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred EEeccccCCc------ceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 9998833221 24678999999999996 79999999999999999999988766 55789999999999997
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
.+++++.|-+.++|+..... +..+..|.. .+..++..+... +++|++.||.+++||+....
T Consensus 230 -~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence 69999999999999765432 446667764 688999988875 79999999999999987643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=97.30 Aligned_cols=259 Identities=14% Similarity=0.230 Sum_probs=148.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC-----------CCeEEEEeCCCccccccCCCCCceeeeC--CCCCe-
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS-----------SCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEG- 169 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v- 169 (406)
+.+...+++.|++ |.-+.|||.. .+|+|-+. ...+.|||+.++.. ...+.. ....+
T Consensus 239 ~~f~r~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l--------krsF~~~~~~~~~W 308 (698)
T KOG2314|consen 239 ESFDRIQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL--------KRSFPVIKSPYLKW 308 (698)
T ss_pred ccHHHHHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccch--------hcceeccCCCcccc
Confidence 3466677888986 8899999988 57887654 24699999998543 222222 22222
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-----------------------
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----------------------- 226 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----------------------- 226 (406)
.-+.||.+++ ++|.-.. .+|.||+..+.... ..-.-....|....|+|.
T Consensus 309 P~frWS~DdK-y~Arm~~-~sisIyEtpsf~ll------d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 309 PIFRWSHDDK-YFARMTG-NSISIYETPSFMLL------DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred ceEEeccCCc-eeEEecc-ceEEEEecCceeee------cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 3468999888 8877655 56888886542110 000001122333333331
Q ss_pred -----------------------CCCEEEEE----------ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 227 -----------------------NENLFGSA----------GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 227 -----------------------~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++.+|+.- +.-..+-|+.++........-.....|...+|-|.|+.+
T Consensus 381 Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 381 PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 22333211 111123334443332211112235667889999999844
Q ss_pred EEEEeCC--CcEEEEeCCC-CCCCcEEecCCCCCeEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccccCC
Q 015484 274 LATASSD--TTVALFDMRK-MTVPLHILSSHTEEVFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~~d--g~i~vwd~~~-~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
.+..+.+ .++.+|.+.+ ...+-..........+.+.|+|.|+. ++.+ |..|.+.++|+......
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~f-vvva~l~s~~g~l~F~D~~~a~~k--------- 530 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRF-VVVAALVSRRGDLEFYDTDYADLK--------- 530 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcE-EEEEEecccccceEEEecchhhhh---------
Confidence 3333333 4789998873 33222222223356789999999985 4443 45788999998751110
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe------CCCcEEEEeCCCcccCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVA------DDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~------~dg~i~iw~~~~~~~~~ 396 (406)
......|. ..+.+.|.|.|+| +++++ .|..-+||++...++++
T Consensus 531 ----~~~~~eh~-~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll~~ 579 (698)
T KOG2314|consen 531 ----DTASPEHF-AATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLLKE 579 (698)
T ss_pred ----hccCcccc-ccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHHHH
Confidence 01112232 4678999999997 44544 35668899888776643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-09 Score=86.05 Aligned_cols=247 Identities=15% Similarity=0.104 Sum_probs=158.1
Q ss_pred eEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
..+.|.|- .-.+||.|+..|...+|...+... .......|...|+-+.=.-+....+..++.|.++++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccc-------ceeeecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 34556552 224799999999999999986321 1222233444333221111222257778899999999
Q ss_pred eCCCccCCceeeeeeeeeccC--ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cc-cccccCCCeeEEEecCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHE--SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQ-RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~~~v~~i~~~~~ 269 (406)
+++.+..... .|. -.+++++.++ +++++++.+....|..|.+..... +. ........-.+.+|+..
T Consensus 144 ~~~~~s~~~~--------~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 144 VVSGDSNKFA--------VHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred EEecCcccce--------eeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 9876543221 122 2378889998 789999999999999999875432 22 12334455677889988
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHI----LSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
.. .+|++..||++.|||+|....|... -..|.+.+..+.|++.|.. +|...-.-+.+.+-|+++....+.....
T Consensus 215 ~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 215 DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred cc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 87 8999999999999999988765443 3458899999999987643 3444445678999999985543322111
Q ss_pred cCCCCeeEEEecCCCC-CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 EDGPPELLFSHGGHKA-KISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++. ...|.. .|+...|+.++.. +.+.+++ .+.=|++.+
T Consensus 294 ~d~-------~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 294 DDV-------ERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccc-------cccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence 111 122333 3888888887764 3343433 244555544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=116.54 Aligned_cols=196 Identities=17% Similarity=0.314 Sum_probs=146.8
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
.++.+-..|.++.=+|... +.+||+.||.|++|.-..++..-.+ ++ ...+.|+.+.|+. .++.+..+..||.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~---rt--~g~s~vtr~~f~~-qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCF---RT--AGNSRVTRSRFNH-QGNKFGIVDGDGDL 2275 (2439)
T ss_pred EeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEe---ec--cCcchhhhhhhcc-cCCceeeeccCCce
Confidence 3444556788888888888 8999999999999998776532211 21 2237889999997 56777788889999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.+|.+. .+.....+.|......+.|-. . ++++++. ++.+.+||.......-.....|.+.++++++.|..+ +
T Consensus 2276 ~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-l 2350 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-L 2350 (2439)
T ss_pred eecccC-CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-E
Confidence 999987 555666677888888888865 3 6676653 579999997654332333388999999999999986 7
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
|++|+.+|.|++||++. .++...++ . +. ... .+++|+..|.++||+++.-.
T Consensus 2351 lisggr~G~v~l~D~rq--------------rql~h~~~-----~----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQ--------------RQLRHTFQ-----A----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EEecCCcCcEEEeehHH--------------HHHHHHhh-----h----hh-hhh-eeeccCcccceEEEEccccc
Confidence 99999999999999986 22222222 1 44 334 68899999999999998753
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-08 Score=91.43 Aligned_cols=208 Identities=17% Similarity=0.299 Sum_probs=133.5
Q ss_pred eEEEEEeecCCceeEEEEcCC-CCcEEEE-----EeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ-KPNLVGT-----KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE 179 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 179 (406)
++.....-|...|+.+.++|. .+..+|+ ++.-+.|+||.+..... ..++..-.-....=..+.|++-|.
T Consensus 156 f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-----~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 156 FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-----HQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc-----cchhhhccccccceeEEEeccCCc
Confidence 333333446788999999996 3445554 34556899999884221 111111111122233678998887
Q ss_pred CeEEEecCC-----------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEE--EecCCcEEEEECC
Q 015484 180 GYLVSGSHD-----------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS--AGDDCQLMIWDLR 246 (406)
Q Consensus 180 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~ 246 (406)
.+|+.++.| .++.+.+++... +...+ ...++|.++.|+| +++-|++ |-.-..+.|||++
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s------~~V~L-~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGES------VSVPL-LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCce------EEEec-CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCC
Confidence 666655432 357777776211 11111 2368999999999 4555544 3456789999987
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
++.+..+ ..++-+++-|+|.|+ +++.++- -|.+-+||..+.+. +..+.. ..-+-+.|+|+|++ ++|+..
T Consensus 303 -~~~v~df--~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a--~~tt~~eW~PdGe~-flTATT 374 (566)
T KOG2315|consen 303 -GKPVFDF--PEGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDVPNRKL-IAKFKA--ANTTVFEWSPDGEY-FLTATT 374 (566)
T ss_pred -CCEeEeC--CCCCccceEECCCCC-EEEEeecCCCCCceEEEeccchhh-cccccc--CCceEEEEcCCCcE-EEEEec
Confidence 4444444 467778899999999 5555554 47999999998554 666654 33456899999986 555544
Q ss_pred ------CCcEEEEeCCC
Q 015484 324 ------DRRLMVWDLNR 334 (406)
Q Consensus 324 ------dg~i~iwd~~~ 334 (406)
|+.++||++..
T Consensus 375 aPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 375 APRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccEEecCCeEEEEecC
Confidence 78999999875
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-11 Score=109.49 Aligned_cols=211 Identities=17% Similarity=0.324 Sum_probs=146.7
Q ss_pred CceeEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----CCCe
Q 015484 116 GEVNRARCMPQK-PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----HDNK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~dg~ 190 (406)
-.+.|+++.-+. +.++++|..+|.|.+-....... .......+|...+++++|++-+.+.||+|- .|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc------ccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 356666665543 36899999999999988876322 123445678899999999998776788773 3678
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
+.|||+.+.-....-.. ....+.....++++|.. +.+++.+|.....+.++|+|....... ...+..+..+..+|..
T Consensus 131 ~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCcccc-ccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh-hhhhhhcccceecCCC
Confidence 99999988622111110 11111334566889984 788888999999999999995432211 1234456778888855
Q ss_pred CcEEEEEeCCCcEEEEe-CCCCCCCcEEecCCCC----CeEEEEEcCCCCCEEEEEeCC-CcEEEEeCCCCC
Q 015484 271 EWVLATASSDTTVALFD-MRKMTVPLHILSSHTE----EVFQVEWDPNHETVLASSADD-RRLMVWDLNRIG 336 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~h~~----~v~~i~~~p~~~~~l~s~~~d-g~i~iwd~~~~~ 336 (406)
.+++++-. ||.|.+|| .++.+.|+..+...+. .+..++|+|....++++.+.| ++|+++|+....
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 54777655 89999999 7777776665554343 499999999887778887754 789999987643
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=91.83 Aligned_cols=242 Identities=14% Similarity=0.274 Sum_probs=149.4
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----------
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---------- 187 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------- 187 (406)
=+-+.|||.| .+|++-...| |.+|--.+ ......+. |. .|.-+.|||... +|+|=+.
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~--------f~r~~RF~-Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES--------FDRIQRFY-HP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc--------HHHHHhcc-CC-CceeeecCCccc-eEEEecCCccccCcccC
Confidence 3568999999 6899988888 88997665 22233332 43 478899999888 9998643
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
...++|||+.+|...+.+.+. ......-.-..|+. +++++|.-.. .+|.||+.....++..-...-..|....|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~---~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVI---KSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred CCceEEEEEccccchhcceecc---CCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCccc
Confidence 257999999999776555432 22222233457886 6788866655 46888887654332211112234455555
Q ss_pred cCCCCcEEEE-----------------------------------------------E----------eCCCcEEEEeCC
Q 015484 267 NPYNEWVLAT-----------------------------------------------A----------SSDTTVALFDMR 289 (406)
Q Consensus 267 ~~~~~~~l~~-----------------------------------------------~----------~~dg~i~vwd~~ 289 (406)
+|.+. +||- - +.-..+.|+.++
T Consensus 355 sP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 355 SPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred CCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 55443 3321 0 111134445555
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC--CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD--DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
....|+..... +..|...+|.|.|..+.+..+. ..++.+|.+.... ..+.++..+.. ...+.+.|
T Consensus 434 eKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------~~~~lVk~~dk--~~~N~vfw 500 (698)
T KOG2314|consen 434 EKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------KKPSLVKELDK--KFANTVFW 500 (698)
T ss_pred ccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------Cchhhhhhhcc--cccceEEE
Confidence 44444444432 5678899999999875444443 3568888887411 12345544443 45778999
Q ss_pred CCCCCcEEEEE--eCCCcEEEEeCCC
Q 015484 368 NKNDPWVISSV--ADDNTVQVWQMTD 391 (406)
Q Consensus 368 s~~~~~~l~s~--~~dg~i~iw~~~~ 391 (406)
+|.|+++++.+ |..|.+.++|.+-
T Consensus 501 sPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 501 SPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cCCCcEEEEEEecccccceEEEecch
Confidence 99999644443 3478899999885
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=102.45 Aligned_cols=218 Identities=14% Similarity=0.183 Sum_probs=150.2
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
..+......+|...|+.+.--.+. +-+++++.|++|++|.+....... +...+..+++.|+.+|.++.|..+.+ +++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~-~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ 800 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI-GTSACQFTYQAHKKPIHDIGFLADLR-SIA 800 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc-ccceeeeEhhhccCcccceeeeeccc-eee
Confidence 345566677899999998876655 568899999999999998753322 23446788899999999999998776 665
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEE-ecCCcEEEEECCCCcccccc-----cc
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSA-GDDCQLMIWDLRTNQTQQRV-----KA 256 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~-----~~ 256 (406)
++ ||-|.+||.-.+....++ ..-..| +.+..+..-|. +..++++| +...+|+++|.|..+....+ .+
T Consensus 801 Sc--D~giHlWDPFigr~Laq~---~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 801 SC--DGGIHLWDPFIGRLLAQM---EDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred ec--cCcceeecccccchhHhh---hcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 54 789999997665332211 111112 22333333332 44555454 78889999999988765544 34
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE-EeCCC
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV-WDLNR 334 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i-wd~~~ 334 (406)
....+++++..+.|+ .++++-..|.|.+.|.|++.. +............++ .|..+ .|+....|.++.+ |..-.
T Consensus 875 Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq-~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGN-KLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CchheeEEEeccCcc-hhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhH-HHHhhcccceeEeeehhcC
Confidence 456789999999998 889999999999999999764 444444333343343 34443 5777777888888 86543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-08 Score=94.10 Aligned_cols=246 Identities=15% Similarity=0.202 Sum_probs=170.7
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-----------CeE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-----------GYL 182 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-----------~~l 182 (406)
|...-.++.|+|.| ++|.|+. ..|.|-|... .+.+..+..|...|+.+.|.|... -+|
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s--------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS--------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh--------hhhhhccccCccceeEEEeccCCCchhccCccccceeE
Confidence 34456788999988 6777664 4588888776 445777888999999999987421 157
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
+++...|.|.+||+...... ..+..+..++.+++|-+. ...++++......+.+|+..+|+..........
T Consensus 83 AsaD~~GrIil~d~~~~s~~------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVI------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred EeccccCcEEEEEehhhhhh------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 88888999999999876432 344567889999999763 336777878888999999999998888776677
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC------cEEecCCCC----------------C---------eEEE
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP------LHILSSHTE----------------E---------VFQV 308 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~h~~----------------~---------v~~i 308 (406)
...|+.+.|.....+..-+..|.+.+-+.-...++ .+.-..|.. . ...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 78889999987766777777787777765432221 122222221 0 1235
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVW 387 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw 387 (406)
+|+|.-++.+. ...-..+.|+|++- ...+....-..+.+.-+.|-|+++. .|.+.-.||.+.||
T Consensus 237 af~p~~rn~lf-i~~prellv~dle~--------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 237 AFSPHWRNILF-ITFPRELLVFDLEY--------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hcChhhhceEE-EEeccceEEEcchh--------------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEE
Confidence 67887766443 33466789999876 2333333333444556677776542 68888999999999
Q ss_pred eCCC
Q 015484 388 QMTD 391 (406)
Q Consensus 388 ~~~~ 391 (406)
--..
T Consensus 302 vrk~ 305 (1062)
T KOG1912|consen 302 VRKE 305 (1062)
T ss_pred Eeec
Confidence 6544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-07 Score=80.78 Aligned_cols=251 Identities=11% Similarity=0.056 Sum_probs=141.1
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCee
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGY 170 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 170 (406)
++...+.-...-..+ ++|+++.+.++.+ .+..|.+||..+... ...+.-. ...-.
T Consensus 38 ~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--------~~~i~~p~~p~~~~~~~~~ 108 (352)
T TIGR02658 38 RVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--------IADIELPEGPRFLVGTYPW 108 (352)
T ss_pred EEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--------EeEEccCCCchhhccCccc
Confidence 344444433333344 9999977777777 688999999998433 3333321 12234
Q ss_pred EEEecCCCCCeEEEec-C-CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-
Q 015484 171 GLSWSPFKEGYLVSGS-H-DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT- 247 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~- 247 (406)
.++++|+|+ +|+... . +..|.+.|+.+++....+.. .....-...+ ....+ +-+.||......+..
T Consensus 109 ~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------p~~~~vy~t~--e~~~~-~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 109 MTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------PDCYHIFPTA--NDTFF-MHCRDGSLAKVGYGTK 177 (352)
T ss_pred eEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEec--CCccE-EEeecCceEEEEecCC
Confidence 789999998 666554 3 78999999998754332211 1111111111 11111 233444444433322
Q ss_pred Ccc-cc---cccccCCCee-EEEecC-CCCcEEEEEeCCCcEEEEeCCCCC----CCcEEecC-------CCCCeEEEEE
Q 015484 248 NQT-QQ---RVKAHEKEVN-YLSFNP-YNEWVLATASSDTTVALFDMRKMT----VPLHILSS-------HTEEVFQVEW 310 (406)
Q Consensus 248 ~~~-~~---~~~~~~~~v~-~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~-------h~~~v~~i~~ 310 (406)
++. .. .+.....++. .-.+.+ ++. .+.+... |.|.+.|+.... .+...+.. ..+.+.-+++
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 111 00 0111000000 003345 666 5555554 999999975432 12222211 2334455999
Q ss_pred cCCCCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEeC
Q 015484 311 DPNHETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVAD 380 (406)
Q Consensus 311 ~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~~ 380 (406)
+|+++.+++... ..+.|.++|..+ .+.+....- ...+..++++|+++ .++++...
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCC--------------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 999987555332 125799999877 234443332 24689999999999 65556557
Q ss_pred CCcEEEEeCCCccc
Q 015484 381 DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 dg~i~iw~~~~~~~ 394 (406)
++.|.+.|+.++..
T Consensus 321 s~~VsViD~~t~k~ 334 (352)
T TIGR02658 321 DKTLYIFDAETGKE 334 (352)
T ss_pred CCcEEEEECcCCeE
Confidence 88999999998854
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-07 Score=79.90 Aligned_cols=240 Identities=14% Similarity=0.125 Sum_probs=146.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 213 (406)
+.-|++|++.+.... .. ...+..+.+..+-|+|+|+++ +|.++-. +|.|..|.++.... .+..+.....
T Consensus 15 s~gI~v~~ld~~~g~----l~-~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGE----LS-LLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccc----cc-hhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCC--eEEEeecccc
Confidence 345999999854321 11 222334567788999999888 7777644 57888888775311 1222222222
Q ss_pred cCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCC-Cccccc--ccccCCC----------eeEEEecCCCCcEEEEEeC
Q 015484 214 HESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRT-NQTQQR--VKAHEKE----------VNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~~l~~~~~ 279 (406)
...+..-++++++ +++++++ ...|.|.++-++. |..... ...|... +.+..+.|+++ +|++..-
T Consensus 87 ~g~~p~yvsvd~~-g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DL 164 (346)
T COG2706 87 PGSPPCYVSVDED-GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDL 164 (346)
T ss_pred CCCCCeEEEECCC-CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeec
Confidence 3344477889984 5555444 5678999999876 332211 1223333 78899999999 5555543
Q ss_pred -CCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 280 -DTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 280 -dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
.-.|.+|++..+... ...+ ........|.|+|+++...+.+-.+++|.+|.+................+ ..+
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP---~dF 240 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP---EDF 240 (346)
T ss_pred CCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc---ccc
Confidence 337999999865421 1112 33456799999999986555566799999999987422221111100000 011
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
. .......|..+++|+++.+|--....|.++.+..
T Consensus 241 ~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 241 T-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred C-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 2 2345778899999996555544556777777654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=95.63 Aligned_cols=265 Identities=18% Similarity=0.265 Sum_probs=162.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc-------------c----------c--C-CC--------CCc
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEK-------------Q----------Q--D-DC--------DPD 159 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~----------~--~-~~--------~~~ 159 (406)
-.+.|.+++|+||+ .+||..+.+|++.+-...-.... + . + .. .|.
T Consensus 119 vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 45789999999999 57888888888877643211000 0 0 0 00 111
Q ss_pred ------eeeeCCCCCeeEEEecCCCCCeEEEecC---C---CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC
Q 015484 160 ------LRLKGHDKEGYGLSWSPFKEGYLVSGSH---D---NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 160 ------~~~~~h~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 227 (406)
..+. +...-..|+|..||. ++|+.+. . ..++||+-+ +... .....-.+--.+++|.| .
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~------stSE~v~gLe~~l~WrP-s 267 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQ------STSEPVDGLEGALSWRP-S 267 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEE------eccccCCCccCCccCCC-C
Confidence 1122 344556899999999 8888764 3 478999865 2211 11111223345789999 6
Q ss_pred CCEEEEEec---CCcEEEEECCC---CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEec-
Q 015484 228 ENLFGSAGD---DCQLMIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILS- 299 (406)
Q Consensus 228 ~~~l~~~~~---dg~i~i~d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~- 299 (406)
++++|+... ...|.+|.-+. ++....+......|..++|++++. +||....|. |.+|-..+-.-.+ +.+.
T Consensus 268 G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence 788877654 34577776332 222222234567899999999999 888877664 9999887644212 1222
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------ccccccCCCCeeEEEecCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ---------------------LELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~h 358 (406)
.....+..+.|+|..+..|...+.+|.+..+++.-.-... +.+....-||.+....-..
T Consensus 346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 2233455699999988778888877887766653211000 0011111122222111224
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+|.+++|++++. .+++-..||.|.+|.....
T Consensus 426 ~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 426 PSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence 56899999999987 4788888999999996554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-09 Score=85.86 Aligned_cols=146 Identities=19% Similarity=0.214 Sum_probs=97.0
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEecC-----CCeEEEEeCCCccCCc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSGSH-----DNKICLWDVSALAQDK 203 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~ 203 (406)
-++++..||.+.+++.+..... ...... |.+. .+.+....+. ++.++.. -+..+.|+++..+.
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~-------~~~i~~~~~~~-as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t-- 171 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLAL-------MSRIPSIHSGS-ASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKT-- 171 (319)
T ss_pred ceEecCCCceEEEEechHHHhh-------hhhcccccccc-cccceeeccc-EEecCCcceEeeccceeeeccccccc--
Confidence 4899999999999998872111 111111 1111 1222333344 4444322 22344555543211
Q ss_pred eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEEEEeCCCc
Q 015484 204 VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTT 282 (406)
Q Consensus 204 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 282 (406)
+ ..-......|.+++-+|...+++++|+.||.+.+||.|.... ...++.|+.++..+-|+|..+..|++++.||.
T Consensus 172 -~---~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 172 -L---IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred -c---cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 1 101112234999999998899999999999999999998754 34458899999999999998889999999999
Q ss_pred EEEEeCCC
Q 015484 283 VALFDMRK 290 (406)
Q Consensus 283 i~vwd~~~ 290 (406)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999874
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-10 Score=94.15 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=114.2
Q ss_pred EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----CCCcEEecCCCCCeEE
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM----TVPLHILSSHTEEVFQ 307 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~ 307 (406)
++.+.+-.+-+-|+.++.. +.+. ..+.|.++.|.-.++ ++..|...|.|..+|+|.. ..+.+ ...|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhh
Confidence 4566677788999988753 3333 678899999998787 9999999999999999975 23333 3358899999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE--eCCCCCcEEEEEeCCCcEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS--WNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~~l~s~~~dg~i~ 385 (406)
+..-...+..|++.+.+|+|++||++.... ..-+..+.||...-.-+- ..+... +++++|.|...+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytR 371 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKC-----------KKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTR 371 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhc-----------ccceeeeecccccccccccccccccc-eEEEccCeeEEE
Confidence 987773334688889999999999987322 123667778865443333 344445 788899999999
Q ss_pred EEeCCCcccCCCcccc
Q 015484 386 VWQMTDSIYRDDDDFL 401 (406)
Q Consensus 386 iw~~~~~~~~~~~~~~ 401 (406)
||.+.++.+..+.++.
T Consensus 372 iWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEecccCceeeccCCC
Confidence 9999998876665544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=95.44 Aligned_cols=252 Identities=13% Similarity=0.241 Sum_probs=157.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..+.|.++.|.++. ..++.+..+|.|.+........ .........-...|.+++|||++. .|+.+..+|++.+
T Consensus 74 ~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~-----~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPD-----EDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCC-----CceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEE
Confidence 34789999999988 4577788999999993322100 111222233457899999999999 9988888899888
Q ss_pred EeCCC-----------------------ccCCcee-------------eee------eeeeccCccEEEEEeeCCCCCEE
Q 015484 194 WDVSA-----------------------LAQDKVI-------------DAM------HVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 194 wd~~~-----------------------~~~~~~~-------------~~~------~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
..-.= |+...++ .+. ..+. ....-..|+|-. ++.+|
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEE
Confidence 65321 0000000 000 0011 233456788987 78888
Q ss_pred EEEec---C---CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCCcEEe--cC
Q 015484 232 GSAGD---D---CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVPLHIL--SS 300 (406)
Q Consensus 232 ~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~--~~ 300 (406)
|+.+- . ..+++|+-. |....+-..-.+--.+++|.|.|. ++|+... ...|.+|.-.....--..+ ..
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC
Confidence 87764 2 579999954 654433333344445789999998 7877665 2356777644332211122 23
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEe
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
....|..+.|++++. +||..-.|. |.+|-..+..-. +...+. .....+..+.|+|..++.|...+
T Consensus 303 ~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWY------------LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 303 EEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWY------------LKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEE------------EEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 456799999999997 677766554 999988773321 122221 12233555999998887677777
Q ss_pred CCCcEEEEeCC
Q 015484 380 DDNTVQVWQMT 390 (406)
Q Consensus 380 ~dg~i~iw~~~ 390 (406)
.+|.+..++..
T Consensus 369 ~~g~~~~~~~~ 379 (928)
T PF04762_consen 369 SNGQYEIYDFA 379 (928)
T ss_pred cCCcEEEEEEE
Confidence 76777655543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.3e-07 Score=74.46 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=134.8
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC---CCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD---KEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
++.+++| .+||. -.|..|.|-...+.-.. .+...+.+. -.=.-++|||++. +||.+...|+|++||+.
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf~s------i~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDDFSS------IIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLM 73 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCCchh------eeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecc
Confidence 4566777 55554 46777777766653221 112222222 2345799999999 99999999999999987
Q ss_pred CccCCceeeeeeeeec-cCccEEEEEeeCCC-----CCEEEEEecCCcEEEEECCCC--c---ccccc---cccCCCeeE
Q 015484 198 ALAQDKVIDAMHVYEA-HESVVEDVSWHLKN-----ENLFGSAGDDCQLMIWDLRTN--Q---TQQRV---KAHEKEVNY 263 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~-----~~~l~~~~~dg~i~i~d~~~~--~---~~~~~---~~~~~~v~~ 263 (406)
.... ..+.+...+.+ -..+|..+.|.+.. ...|++...+|.++-|-+-.+ + ....+ ..+...|++
T Consensus 74 g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 74 GSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred ccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 5322 22222121111 23567777775422 235667778888887765322 1 12222 224678999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCcE------EEEeCCCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL-ASSADDRRL------MVWDLNRIG 336 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l-~s~~~dg~i------~iwd~~~~~ 336 (406)
+.++|..+ +|++|+.... .. . .-++....+++-..-.+.+++. ++...|+.. .+|.+-+
T Consensus 153 ~vy~p~h~-LLlVgG~~~~------~~--~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-- 218 (282)
T PF15492_consen 153 AVYHPKHR-LLLVGGCEQN------QD--G---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-- 218 (282)
T ss_pred EEEcCCCC-EEEEeccCCC------CC--c---cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc--
Confidence 99999888 6666654322 00 0 0112223334333333333322 222222221 2222221
Q ss_pred cccccccccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 337 DEQLELDAEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...+.. ......|..|..||+|. +||+...+|.|.+|++.+-...
T Consensus 219 -------------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 219 -------------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred -------------eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhh
Confidence 111222 22456799999999999 8999999999999999876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-08 Score=90.95 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=160.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|++.|.-+.|+.+. ..|-+...+|.|.||-+-++. +-....-....+.|.+++|+.+|. .++....||.
T Consensus 67 LeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgs------W~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGa 138 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGS------WCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGA 138 (1189)
T ss_pred hccCcceEEEEEecccc-ccccccCCCceEEEEeeeccc------HHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCC
Confidence 34799999999999887 468888999999999998742 222222334556788999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-------c----cccccCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-------Q----RVKAHEK 259 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-------~----~~~~~~~ 259 (406)
|.+=.++..+. +. ..++ ......+.|++ +...+..+-..|.+.+||....-.. . .+.....
T Consensus 139 vIVGsvdGNRI---wg--KeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 139 VIVGSVDGNRI---WG--KELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred EEEEeecccee---cc--hhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc
Confidence 98877665321 10 1111 12344678998 5566667778899999997632110 0 1111223
Q ss_pred CeeEEEec--------CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC------
Q 015484 260 EVNYLSFN--------PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR------ 325 (406)
Q Consensus 260 ~v~~i~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg------ 325 (406)
.+..+.|. |+.+ .|+++...|.+.+..-.+...|+..-.+ -.+..+.|+++|. +|+.++.+.
T Consensus 211 kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~ 286 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPT 286 (1189)
T ss_pred cccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCc-EEEEccCcccccCcc
Confidence 35556664 4666 8999999999988766655565544443 6789999999996 788887653
Q ss_pred ---cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 326 ---RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 326 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.|.+|..- ...+.+++.....|++++|-..|- .++- ..|+.|.+=++.
T Consensus 287 d~n~v~Fysp~---------------G~i~gtlkvpg~~It~lsWEg~gL-riA~-AvdsfiyfanIR 337 (1189)
T KOG2041|consen 287 DSNKVHFYSPY---------------GHIVGTLKVPGSCITGLSWEGTGL-RIAI-AVDSFIYFANIR 337 (1189)
T ss_pred ccceEEEeccc---------------hhheEEEecCCceeeeeEEcCCce-EEEE-EecceEEEEeec
Confidence 23333321 133444455566799999987765 2333 336666655544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-09 Score=90.24 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=106.5
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEE--EEEecCCcEEEEECCCC
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF--GSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l--~~~~~dg~i~i~d~~~~ 248 (406)
.+..++.++ +||.+..+....++++...... .+.+..+. -...-+.+.|...+...+ -..++...+.+|....+
T Consensus 67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKG--AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccCCCce-EEEEEeCCCceEEEEEecCCCc--ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445566666 7888777777777777654431 11122211 122233333333222322 23345556666665553
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. ...+.+|-+.++.++|+|+++ +++++..|..|++-........-...-+|+.-|..++.-++. .|+++|.|++++
T Consensus 143 ~-~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 R-CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred C-cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 3 334457999999999999998 999999999999988776544223345799999999998875 589999999999
Q ss_pred EEeCCCCCcc
Q 015484 329 VWDLNRIGDE 338 (406)
Q Consensus 329 iwd~~~~~~~ 338 (406)
+||+.++...
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999986543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-08 Score=79.80 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=127.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
+|+.|+..|...+|...+.... +.....+...|+-+.-..+...-+..++.|.++++.++..+..........-.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h-----~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGH-----LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred EEEeccccceeeeecccCcccc-----eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 7999999999999998864321 12222232222211111112233446788888888888755433333222233
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+++++++++++ ++++.+....|..|.+......+.. .......-.+..|+.... .+|++.+||++.|||++..+.+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccc
Confidence 88999999999 7888888889999998765443322 233344567788998886 6999999999999999986543
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc--EEEEEeCCCcEEEEeCCCc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW--VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--~l~s~~~dg~i~iw~~~~~ 392 (406)
... ...+...|.+.+..+.|++-|.. ++++ -.-+.+++-|+.+.
T Consensus 239 m~~---------~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 239 MAE---------ISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNY 284 (344)
T ss_pred hhh---------hcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccC
Confidence 321 11223458899999999987653 4444 34567888888776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=84.16 Aligned_cols=245 Identities=13% Similarity=0.235 Sum_probs=150.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCC---------------eEEEEeCCCccccccCCCCCceeeeCCCCC--ee-EE
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSC---------------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKE--GY-GL 172 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l 172 (406)
.+.|+ .|.-+.|+|.+ .+|.+-+..+ .+.+||+..+.. +..+.....+ .+ -+
T Consensus 68 ~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i--------v~sf~~~~q~~~~Wp~~ 137 (561)
T COG5354 68 RFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI--------VFSFNGISQPYLGWPVL 137 (561)
T ss_pred eeecC-CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCcee--------EeeccccCCccccccee
Confidence 44453 47778888877 5777765433 489999988533 3444444444 44 67
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEE-----EecCCcEEEEECC
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGS-----AGDDCQLMIWDLR 246 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~-----~~~dg~i~i~d~~ 246 (406)
.|+-++. ++|-. ....+.++++ +.... ..+...+. ...|....|+|. +...|+. .+..+.+++|.+.
T Consensus 138 k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~--~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 138 KFSIDDK-YVARV-VGSSLYIHEI-TDNIE--EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred eeeecch-hhhhh-ccCeEEEEec-CCccc--cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 8888776 65554 3457999997 32211 11112221 356888888885 2333333 3578899999998
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS----------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
.+..+.+..-....-..+.|++.|.++++-.- ....+++++++....++.. .-.++|...+|.|.++.
T Consensus 211 ~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 211 KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCc
Confidence 66655444333444457889999985443321 1246889998865554433 55789999999999876
Q ss_pred EEE-EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCc
Q 015484 317 VLA-SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---NTVQVWQMTDS 392 (406)
Q Consensus 317 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~ 392 (406)
+.+ +|-.+-.+.++|++. .+.+.. ....=..+.|+|.++|+|+ ++.| |.+-+|++.+.
T Consensus 289 F~vi~g~~pa~~s~~~lr~---------------Nl~~~~--Pe~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~r 350 (561)
T COG5354 289 FAVISGYMPASVSVFDLRG---------------NLRFYF--PEQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred eeEEecccccceeeccccc---------------ceEEec--CCcccccccccCcccEEEE-ecCCccccceEEeccCCc
Confidence 433 335788899999986 333322 2333455667777775443 3333 45666666554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-07 Score=79.36 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=112.3
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-eEEEEeCCCccC
Q 015484 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-KICLWDVSALAQ 201 (406)
Q Consensus 123 ~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~ 201 (406)
|++....++|..+ .|...|.+.... ...-.+|...|.-..+..+++ -++.|..|| .+-++|..++..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~----------~~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~ 394 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDG----------YSIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEV 394 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCC----------eeEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCceE
Confidence 4444446777766 466777776552 112235777788888887777 889999999 899999988642
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
..+...-+.|.++..+| +++.++++.....|.+.|+.+++....-+...+-|+.+.|||+++ ++|-+--+|
T Consensus 395 -------kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~g 465 (668)
T COG4946 395 -------KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEG 465 (668)
T ss_pred -------EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcc
Confidence 33444567899999998 788888889999999999999986544455678899999999999 777766555
Q ss_pred ----cEEEEeCCCCC
Q 015484 282 ----TVALFDMRKMT 292 (406)
Q Consensus 282 ----~i~vwd~~~~~ 292 (406)
.|+++|+...+
T Consensus 466 y~tq~Iklydm~~~K 480 (668)
T COG4946 466 YYTQSIKLYDMDGGK 480 (668)
T ss_pred eeeeeEEEEecCCCe
Confidence 79999998754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-07 Score=85.01 Aligned_cols=197 Identities=7% Similarity=0.013 Sum_probs=116.7
Q ss_pred CeeEEEecCCCCCeEEEecC---CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEE
Q 015484 168 EGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMI 242 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i 242 (406)
......|+|+|+..++..+. +..|.++|+.+++.. .+....+......|+|++..++++.+.+ ..|.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 67789999999843554333 356888898775431 1122344556678999655666665544 46888
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
+|+.+++. ..+..+........|+|+|+.++++....+ .|.+.|+..+.. ..+...... ...|+|+|+.++++
T Consensus 262 ~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 262 YDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKNYIVYS 336 (419)
T ss_pred EECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCCc--CceECCCCCEEEEE
Confidence 88877753 334333333345689999995555554444 677788876543 222221111 24899999975555
Q ss_pred EeCC--------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc--EEEEeCC
Q 015484 321 SADD--------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT--VQVWQMT 390 (406)
Q Consensus 321 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~--i~iw~~~ 390 (406)
.... ..|.+.|+..... ..+.. . .......|+|+|+.++.+....+. +.+.++.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~------------~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYI------------RRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCe------------EECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 5443 3577777765221 11111 1 123358899999965555544333 5566665
Q ss_pred Cc
Q 015484 391 DS 392 (406)
Q Consensus 391 ~~ 392 (406)
..
T Consensus 401 g~ 402 (419)
T PRK04043 401 YN 402 (419)
T ss_pred CC
Confidence 54
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-10 Score=98.92 Aligned_cols=215 Identities=17% Similarity=0.258 Sum_probs=142.2
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+.+|+..|..++--.+.+ .+++++.|.+|++|.++.... ...-.+..++..|+.+|.++.|-. +.+.+ ++.|
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-cccee--eecc
Confidence 456778999998887655444 899999999999999976432 223345677889999999999986 45555 4668
Q ss_pred CcEEEEECCCCcccccc--cccCCCeeEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCC--CcEEe--cCCCCCeEEEE
Q 015484 238 CQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNP--YNEWVLATASSDTTVALFDMRKMTV--PLHIL--SSHTEEVFQVE 309 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~h~~~v~~i~ 309 (406)
|.|++||.--++.+..+ ....+.+..+..-| +..-+++.++...+|+++|.|..+- ..+.. .+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999998877776544 11223333333333 3342344447788999999997653 12222 34456789999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE-Ee
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV-WQ 388 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i-w~ 388 (406)
..|.|+. ++++-..|+|.+.|.+++. .+.....-......++ .|..+ .++....|.++.+ |.
T Consensus 884 Va~~GN~-lAa~LSnGci~~LDaR~G~--------------vINswrpmecdllqla-apsdq-~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 884 VADKGNK-LAAALSNGCIAILDARNGK--------------VINSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWH 946 (1034)
T ss_pred eccCcch-hhHHhcCCcEEEEecCCCc--------------eeccCCcccchhhhhc-CchhH-HHHhhcccceeEeeeh
Confidence 9999985 8888899999999998833 2222222121222222 23344 4666666777777 77
Q ss_pred CCCccc
Q 015484 389 MTDSIY 394 (406)
Q Consensus 389 ~~~~~~ 394 (406)
..+++.
T Consensus 947 aldgim 952 (1034)
T KOG4190|consen 947 ALDGIM 952 (1034)
T ss_pred hcCCee
Confidence 766654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-07 Score=84.60 Aligned_cols=196 Identities=9% Similarity=0.056 Sum_probs=115.7
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--Ce
Q 015484 116 GEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~ 190 (406)
+.+..-.|+|++..+++..+. ...|+++|+.+... ..+....+......|+|+|+.++++.+.+ ..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 467789999999654554333 35688899876322 22333445566788999998555555544 45
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.++|+..+.. ..+..+........|+|++..++++....| .|.++|+.+++..+.... ... ...|+|
T Consensus 259 Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SP 328 (419)
T PRK04043 259 IYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVST 328 (419)
T ss_pred EEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECC
Confidence 77777766432 112222222334579996555655554444 577888887665332221 111 248999
Q ss_pred CCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc--EEEEeCC
Q 015484 269 YNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR--LMVWDLN 333 (406)
Q Consensus 269 ~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~--i~iwd~~ 333 (406)
+|+.++++.... ..|.+.|+..+. ...+... .......|+|+|+.++.+....+. +.+.++.
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 999555554433 368888887654 3444433 233458899999865555544444 4444443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-06 Score=74.19 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=141.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
++.|.+....++++-...+.|+.|+...... ..+.... ..++++...+. .|+.+...+ +.++|+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~---------~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV---------EVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE---------EEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE---------EEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCC
Confidence 5688885547888888899999999987421 1122222 66778873333 555565544 555688775
Q ss_pred cCCceeeeeeeee--c-cCccEEEEEeeCCCCCEEEEEecC--------CcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 200 AQDKVIDAMHVYE--A-HESVVEDVSWHLKNENLFGSAGDD--------CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 200 ~~~~~~~~~~~~~--~-~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+. ..+.... . .....+++++.| ++++.++.... |.|..++.. ++. ..+...-...+.|+|+|
T Consensus 71 ~~----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 71 KV----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EE----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEET
T ss_pred cE----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECC
Confidence 32 2222221 1 345789999999 56677665533 567777776 443 22323345678999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCc------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPL------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++.++++-+..+.|..|++......+ ..+....+..-.+++..+|+ +.++....+.|.+++...
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G-------- 214 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG-------- 214 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS--------
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc--------
Confidence 999566677778899999986433211 12222223478899999996 677777889999999763
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEe-CCCCCcEEEEEe
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSW-NKNDPWVISSVA 379 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~l~s~~ 379 (406)
+++....-....+++++| -++...+++|.+
T Consensus 215 -------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 -------KLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------CEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -------cEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 334433333457999999 456565666653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=88.21 Aligned_cols=223 Identities=14% Similarity=0.252 Sum_probs=152.6
Q ss_pred CCeEEEEEeecCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCcccccc-------------------------C---
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQ-------------------------D--- 154 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~-------------------------~--- 154 (406)
+.|...+...-...|+.|.|..+ +...++..+.|.+|++|.+.....+.. +
T Consensus 74 ~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls 153 (460)
T COG5170 74 LEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLS 153 (460)
T ss_pred cchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccc
Confidence 44555566666788999999864 344566678899999999876422110 0
Q ss_pred ------CCCCceee-eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-----ccEEEEE
Q 015484 155 ------DCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-----SVVEDVS 222 (406)
Q Consensus 155 ------~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~i~~i~ 222 (406)
...|...+ ..|.-.|.++.|+.+.. .++++ .|-.|.+|+++.....-.+ ...+.|. .-|++..
T Consensus 154 ~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItSae 228 (460)
T COG5170 154 EHDEIIAAKPCRVYANAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceEEEeccceeccccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEE---EeccCccHHHHHHHHhhcc
Confidence 01111112 35667788999998877 77776 5788999998765432221 2222332 4588899
Q ss_pred eeCCCCCEEEEEecCCcEEEEECCCCccc----cc------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QR------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 223 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
|+|.....|.-.+..|.|++-|+|+.... .. +..-.+.|..+.|+++|+ ++++-+. -++++|
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEE
Confidence 99988888888899999999999954321 11 122335678899999998 6665543 589999
Q ss_pred eCCCCCCCcEEecCCCC------------Ce---EEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 287 DMRKMTVPLHILSSHTE------------EV---FQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~------------~v---~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
|.+..+.|+.++..|.. .| ..+.|+.+... +++|+..+..-||-..+
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecccc
Confidence 99998888888865542 22 35788888875 77888888877776443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-09 Score=90.02 Aligned_cols=228 Identities=14% Similarity=0.151 Sum_probs=153.9
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEE
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIW 243 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~ 243 (406)
|...|+.+.-.. .. ++.+++.||.++.|--.... ....+..+..|-..|.+++.+- ++.++++++. |..++++
T Consensus 8 hrd~i~hv~~tk-a~-fiiqASlDGh~KFWkKs~is---GvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AK-FIIQASLDGHKKFWKKSRIS---GVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh-hh-eEEeeecchhhhhcCCCCcc---ceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence 667777665543 33 89999999999999754421 1233455667888888888885 7888888787 9999999
Q ss_pred ECCCCcccccccc--cCCCeeEEEecCCCC-cEEEE-EeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEE
Q 015484 244 DLRTNQTQQRVKA--HEKEVNYLSFNPYNE-WVLAT-ASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 244 d~~~~~~~~~~~~--~~~~v~~i~~~~~~~-~~l~~-~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
|+..-..+.-++. ..+.+. ...+|... ..+++ .-.+|.+.++|-+...++ ...-..|..+|..+.++|.+.. +
T Consensus 82 DvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-A 159 (558)
T ss_pred EeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-e
Confidence 9987655433321 112221 12222211 13333 345789999999876643 4455679999999999999984 8
Q ss_pred EEEeCCCcEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 319 ASSADDRRLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
++....|.|.-|.... ...+......+.....-++.+........++.|+|++. .+.+-+.|..|+++.+.++.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhh
Confidence 8888899999999873 11111111111111122333344566789999999999 688889999999999999987666
Q ss_pred cccc
Q 015484 398 DDFL 401 (406)
Q Consensus 398 ~~~~ 401 (406)
-++.
T Consensus 239 iDE~ 242 (558)
T KOG0882|consen 239 IDEV 242 (558)
T ss_pred hhcc
Confidence 5443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=87.68 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=105.7
Q ss_pred EEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CC
Q 015484 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VP 294 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~ 294 (406)
..+..++ ++.++|++..+....+++.+.......+ ..-...-+++.+..... ....+...|.++-+|+-+.. .+
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeecccccC
Confidence 3344555 7788888888877777777654431111 11122234455544444 34444444444444443311 23
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
...+-+|-+.++.++|+|+++ +|+++..|..|+|-.+.... ..-.-.-||...|..++.-++. .
T Consensus 144 ~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-------------~IesfclGH~eFVS~isl~~~~--~ 207 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-------------VIESFCLGHKEFVSTISLTDNY--L 207 (390)
T ss_pred cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-------------chhhhccccHhheeeeeeccCc--e
Confidence 455678999999999999997 69999999999998876511 1112235799999999999875 4
Q ss_pred EEEEeCCCcEEEEeCCCcccC
Q 015484 375 ISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~~ 395 (406)
|+|+|.|++|++||+.++...
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeecCCCCcEEEEecccCCcc
Confidence 889999999999999998765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-07 Score=74.25 Aligned_cols=204 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCC-----CCeEEEecCCCe
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFK-----EGYLVSGSHDNK 190 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-----~~~l~s~~~dg~ 190 (406)
+=+.++|+|++ .+||.+...|+|++||+....... ..+.....+ -...|.++.|.+.. ...|+.-...|.
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~---I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV---IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE---cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 45678999999 689999999999999998633211 112121211 23566777776543 124667778899
Q ss_pred EEEEeCCCcc--CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 191 ICLWDVSALA--QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++-|-+..+. .-...........+...|+++.++|. .++|++||.... +.+. -++....+++-..-.
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILS 189 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC-CCEEEEeccCCC------CCcc----ccccccCceEEEEcC
Confidence 9888774322 11111111111234678999999994 456655554221 1100 111222333333322
Q ss_pred CCCcEE-EEEeCCCc------EEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 269 YNEWVL-ATASSDTT------VALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 269 ~~~~~l-~~~~~dg~------i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+.+++. ++...|+. ..+|.+-+... ..........|..|..+|+|. +||+...+|.|.+|++.+...
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~-fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKF-FSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceee-eeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence 222222 22222221 12332221110 011122356799999999997 799999999999999987443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-07 Score=93.39 Aligned_cols=215 Identities=11% Similarity=0.122 Sum_probs=133.4
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCC-------CCCeeEEEecCCCCCeEEEecCC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGH-------DKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....|++.+++..++++-...+.|+++|..+...... +.........+. -..-.+++++|++..++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 3577888887744455555567899999866322110 000000000000 01235799999555377777888
Q ss_pred CeEEEEeCCCccCCceeee---eeeeec------cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-------
Q 015484 189 NKICLWDVSALAQDKVIDA---MHVYEA------HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ------- 252 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~---~~~~~~------~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~------- 252 (406)
+.|++||..++... .+.. .....+ .-.....|+++|+++.++++-+.++.|++||+.++....
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999998765321 0000 000000 112456799999655577788888999999998754211
Q ss_pred ------cccc--------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--------------CCCC
Q 015484 253 ------RVKA--------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--------------HTEE 304 (406)
Q Consensus 253 ------~~~~--------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------h~~~ 304 (406)
.+.. .-.....++++++|. ++++-+.++.|++||..+.. +..+.+ .-..
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCC
Confidence 0000 011235789999998 88888889999999987643 222211 1235
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...|+++++|+ ++++-+.++.|++||+.+..
T Consensus 861 P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 861 PAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 78899999996 78888899999999997743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-07 Score=79.26 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CCCCeeEEE-ecCCCCCeEEEecCCCeEEEEeCCCccC
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HDKEGYGLS-WSPFKEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
+|+.++.. ..|.|++||..+.......-..|+..-.. .-.+..-+. |++....+++..|. |...+.+...+-
T Consensus 277 DGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~- 352 (668)
T COG4946 277 DGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY- 352 (668)
T ss_pred CCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe-
Confidence 56555554 45669999988754322111101110000 001111121 44433338888865 777777765542
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
....++...|.-..+.. .+.-++.|..|| .+-++|.++++. ..+...-+.|.++..+|+|. .++++...
T Consensus 353 -------~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK-~~vvaNdr 422 (668)
T COG4946 353 -------SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK-KVVVANDR 422 (668)
T ss_pred -------eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc-EEEEEcCc
Confidence 11234666677777765 455777899999 899999988764 44555678899999999999 78888777
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----cEEEEeCCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR----RLMVWDLNR 334 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg----~i~iwd~~~ 334 (406)
..|.++|+.+++. ...-+...+-|+.+.|+|+++ ++|-+--+| .|+++|+..
T Consensus 423 ~el~vididngnv-~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 423 FELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eEEEEEEecCCCe-eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCC
Confidence 8999999998764 333344567899999999998 588776665 589999876
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-08 Score=93.55 Aligned_cols=186 Identities=17% Similarity=0.246 Sum_probs=136.8
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 259 (406)
..++-|+....+..+|+++.+..+. ..-....|.-+.. +++.+.+|...|+|.+-|.++.+.+.++.+|.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~------~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT------TNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred cceeecchhhheeeeecccceeeee------eeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 3677787888888999988654321 1112223554543 578888999999999999999999999999999
Q ss_pred CeeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 260 EVNYLSFNPYNEWVLATASS---------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.|..+.. .|+ +|++++. |..|+|||+|+... +.-+..+.++ .-+.|+|.-...++.++..|...+-
T Consensus 219 siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 219 SISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ceeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 9977655 476 7777764 55789999998764 3333333333 5578889877779999999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|...... |+.-++........+..+.+++++. .++-|..+|.|.+|.-.
T Consensus 294 d~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 294 DTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cccccCC----------CccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCC
Confidence 9444222 2233444444555699999999999 79999999999999743
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-07 Score=89.57 Aligned_cols=183 Identities=16% Similarity=0.274 Sum_probs=134.1
Q ss_pred CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 128 PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 128 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
+..++.|+-...+..+|+.+..+ .....-....|+-++.+ ++ .+.+|...|+|.+-|.++. +.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e--------~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~~ 209 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKE--------TRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------ET 209 (1118)
T ss_pred Ccceeecchhhheeeeeccccee--------eeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------ce
Confidence 34566676677788888887432 22222223345555543 55 8999999999999998774 34
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEec---------CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGD---------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
++.+..|.+.|.++... +++|+++|. |.-|++||+|..+.+..+.-+.++ .-+.|+|.-...+++++
T Consensus 210 iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 210 IHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe
Confidence 57888999999987764 677777764 556899999998887777555444 45788888766899999
Q ss_pred CCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 279 SDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
..|...+-|......| +..+......+..+.++++++ .|+.|..+|.|.+|.-
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 9999999994443333 444455556699999999997 6999999999999983
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=83.44 Aligned_cols=268 Identities=11% Similarity=0.042 Sum_probs=173.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-C
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-D 188 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-d 188 (406)
+.+-|...|+.+..... .++.+++.||.++.|.-..... ..-+..+..|...|.+++.+-++. ++.|++. |
T Consensus 4 ksymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG-----vEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~D 75 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG-----VEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPD 75 (558)
T ss_pred hhhcccceeeeEeeehh--heEEeeecchhhhhcCCCCccc-----eeehhhhHHHHHHHHhhhccccce-eEeeccCcc
Confidence 45678888888876654 5899999999999998765211 222455667888999999998888 8888777 9
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC--CEEEEEecCCcEEEEECCCCccc-c-cccccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE--NLFGSAGDDCQLMIWDLRTNQTQ-Q-RVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~-~-~~~~~~~~v~~i 264 (406)
..++++|+++-.....++ +.--.+.+..+ .+|.+. .+-++.-.+|.+.++|-+...+. . .-..|..+|..+
T Consensus 76 hs~KvfDvEn~DminmiK----L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIK----LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cceeEEEeeccchhhhcc----cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence 999999998754322221 11122222221 122111 22233457899999998765432 2 225689999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCC-CCCC-------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRK-MTVP-------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.+++.+. .+++....|.|.-|.... .+.| +..+...+....++.|+|++.. +.+-+.|..|+++
T Consensus 151 ~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F 228 (558)
T KOG0882|consen 151 RYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGF 228 (558)
T ss_pred Eeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEE
Confidence 9999998 788888889999998763 1111 1222234566889999999985 8888999999999
Q ss_pred eCCCCCccccccccc----CC---CCeeEEE-----------ecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 331 DLNRIGDEQLELDAE----DG---PPELLFS-----------HGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 331 d~~~~~~~~~~~~~~----~~---~~~~~~~-----------~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++.++...+...+.. .. +..+... +..|. ..-+.+.|...+.+ |.-++-=| |++.++.+
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f-lly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF-LLYGTILG-IKVINLDT 306 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE-EEeeccee-EEEEEeec
Confidence 998754322111110 00 0000000 01122 23467889999985 55555444 88888888
Q ss_pred ccc
Q 015484 392 SIY 394 (406)
Q Consensus 392 ~~~ 394 (406)
+.+
T Consensus 307 n~v 309 (558)
T KOG0882|consen 307 NTV 309 (558)
T ss_pred CeE
Confidence 754
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-06 Score=76.49 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=143.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|...|..++|+|....++..++.+.+|.|.|+.+. ..+..+..| ..+++++|.-+..++|.+|...|.|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccc--------eeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 467899999999988668999999999999999983 224455556 78999999999988999999999999
Q ss_pred EEeCCCccCCceeeeeeeeec--cCccEEEEEeeCC-----CCCEEEEEecCCcEEEEECCCC--cccccc-cccCCCee
Q 015484 193 LWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLK-----NENLFGSAGDDCQLMIWDLRTN--QTQQRV-KAHEKEVN 262 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~-----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~-~~~~~~v~ 262 (406)
+||++...... ..+.+ ...+|..++.-+. .+.+++....+ +..|.+... .....+ ....+...
T Consensus 262 vyD~R~~~~~~-----~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ci 334 (463)
T KOG1645|consen 262 VYDMRQPEGPL-----MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICI 334 (463)
T ss_pred EEEccCCCchH-----hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCccee
Confidence 99998754321 11111 1233444332221 24444433332 445654422 112212 12355667
Q ss_pred EEEecCCCCcEEEEEeCCC---c---EEE-EeCCCCCCCcEEecCC-CCC------eEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 263 YLSFNPYNEWVLATASSDT---T---VAL-FDMRKMTVPLHILSSH-TEE------VFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg---~---i~v-wd~~~~~~~~~~~~~h-~~~------v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
+++.++..+.+|++.-.+. + |.. -|.+.+......-..+ .+. -..+.=.++...++..+..-+.+.
T Consensus 335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~li 414 (463)
T KOG1645|consen 335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELI 414 (463)
T ss_pred eeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeE
Confidence 7777776665666654421 1 111 1111111111111111 000 011222344555666777778999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+||..+. +.+..+. -..+|.+++... ++..+|+.-. |..++||..+.
T Consensus 415 l~D~~s~--------------evvQ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 415 LQDPHSF--------------EVVQTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred Eeccchh--------------heeeecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9999873 3444433 236777777644 3333455544 77899997654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=79.19 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=108.2
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.++...+.+|...|.+++|+|...+++..++.+..|+|.|+++... ...+..+ ..+++++|.-++.+++.+|-
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEec
Confidence 3444567788899999999999888999999999999999998543 2334444 78999999998899999999
Q ss_pred cCCcEEEEECCCCccc-cccc--ccCCCeeEEEec------CCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCC
Q 015484 236 DDCQLMIWDLRTNQTQ-QRVK--AHEKEVNYLSFN------PYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEE 304 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~-~~~~--~~~~~v~~i~~~------~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~ 304 (406)
..|.|.+||++..+.. ..+. ....+|..++.- +.+. +|+....+ +..|.+.... .+...-....+.
T Consensus 256 ~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred cCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 9999999999976542 2221 233455554432 2344 44444332 5667654322 111122233566
Q ss_pred eEEEEEcCCCCCEEEEEeCC
Q 015484 305 VFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~d 324 (406)
..+++.++..+++|++.-.+
T Consensus 333 cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred eeeeeecCccceEEEEecCC
Confidence 77888888777777776553
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=84.19 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=107.8
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE 212 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 212 (406)
+.+.+-.|.+-++.++- ...+. .++.|.++.|...++ +++.|..+|.|...|++.......... .. -
T Consensus 229 s~G~sqqv~L~nvetg~---------~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a-~r-l 295 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH---------QQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCA-QR-L 295 (425)
T ss_pred cccccceeEEEEeeccc---------ccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcce-EE-E
Confidence 33445567788887731 12232 567899999998787 999999999999999998755433322 22 2
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEE--EecCCCCcEEEEEeCCCcEEEEe
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYL--SFNPYNEWVLATASSDTTVALFD 287 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i--~~~~~~~~~l~~~~~dg~i~vwd 287 (406)
-|.+.|+++..-..++..|.+.+.+|.|.+||+|.-++ +.++.+|-..-.-+ ..++... .+++++.|...+||.
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWS 374 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEe
Confidence 47889999886654677888889999999999998766 66666664332222 2344455 788899999999999
Q ss_pred CCCCCCCcEEec
Q 015484 288 MRKMTVPLHILS 299 (406)
Q Consensus 288 ~~~~~~~~~~~~ 299 (406)
++.+.. +.++.
T Consensus 375 l~~ghL-l~tip 385 (425)
T KOG2695|consen 375 LDSGHL-LCTIP 385 (425)
T ss_pred cccCce-eeccC
Confidence 998654 44443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-07 Score=84.82 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=168.4
Q ss_pred EEEEee-cCCceeEEEEcCC-----------CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec
Q 015484 108 IAQKIR-VDGEVNRARCMPQ-----------KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS 175 (406)
Q Consensus 108 ~~~~~~-h~~~v~~i~~~p~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 175 (406)
.++.++ |+..|+.++|.|. ..-+||++.-.|.|.+||.... ..+..+..|.+++..++|-
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--------s~~~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--------SVINWLSHSNDSVQDLCWV 118 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--------hhhhhhcCCCcchhheeee
Confidence 344444 7799999999883 1236788888999999999873 3356678889999999997
Q ss_pred CC---CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--
Q 015484 176 PF---KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-- 250 (406)
Q Consensus 176 ~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-- 250 (406)
+. .+..|++-....+|.+|+..+|... ...........|+.+.|.+.+.|..-+..|.+.+.+.-..+.
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~ 192 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKF------WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD 192 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCcee------eccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence 64 2236777777889999999988642 222333456777999998888887777778777766432110
Q ss_pred --cccc---cccCC-------------------------CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC
Q 015484 251 --QQRV---KAHEK-------------------------EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 251 --~~~~---~~~~~-------------------------~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.+.+ ..|.. ..-.++|+|.-++.++..- ...+.++|+.-.. ++.....
T Consensus 193 ~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~-~l~vvpi 270 (1062)
T KOG1912|consen 193 VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYEC-CLAVVPI 270 (1062)
T ss_pred CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhc-eeEEEEe
Confidence 0100 11111 0123567887775555544 5679999998744 4666666
Q ss_pred CCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCCCCcccccccc----cC-CCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 301 HTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLELDA----ED-GPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
..+.+.-+.|-|+.+. .|.+...||.+.||-.+......+.... .. .....+.... .-.+......|..+..
T Consensus 271 er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa 348 (1062)
T KOG1912|consen 271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSA 348 (1062)
T ss_pred ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChhh
Confidence 6676777788777542 6888899999999976553222211000 00 0011111111 1123333445553333
Q ss_pred EEEEeCCCcEEEEeCCCccc
Q 015484 375 ISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~ 394 (406)
++.--.+|.+.+|++.++..
T Consensus 349 ~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 349 LAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred hhhhhhcchhHHHhhhcCCc
Confidence 44444578899999997654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-05 Score=68.35 Aligned_cols=234 Identities=18% Similarity=0.194 Sum_probs=145.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-----CCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCE-VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-----HDN 189 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg 189 (406)
...-.++.+|..+..++.+-.-|+ ..+||..+..........+-..+.+| -.|+++|+ +|++.- ..|
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g~G 77 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETGRG 77 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCC-EEEEeccccCCCcE
Confidence 445567888877678888887775 67899987544322222333445554 36999999 777753 358
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-----------------cCCcEEEEECCCCcccc
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-----------------DDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~ 252 (406)
.|-|||...+ +..+..+..+.-....+.+.|++..++++-+ .+-++.+.|.++++.+.
T Consensus 78 ~IgVyd~~~~-----~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 78 VIGVYDAARG-----YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred EEEEEECcCC-----cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 9999999832 2334556667666778888984434443321 12346666777787765
Q ss_pred c--c--cccCCCeeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCCcEEe-------cCCCCCeEEEEEcCCC
Q 015484 253 R--V--KAHEKEVNYLSFNPYNEWVLATASSDT-------TVALFDMRKMTVPLHIL-------SSHTEEVFQVEWDPNH 314 (406)
Q Consensus 253 ~--~--~~~~~~v~~i~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~-------~~h~~~v~~i~~~p~~ 314 (406)
. + ..|.-.+..++++++|. .++..-..| -|-+++.... +..+ ..-.+.+-+|++++++
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred eeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCC
Confidence 5 3 33677899999999987 444333332 2334433321 1112 2234679999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
..+.+|+=..+.+.+||..+. .++.... -..+..++-.+++ +++|.+ .|.+
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg--------------~~~~~~~--l~D~cGva~~~~~--f~~ssG-~G~~ 279 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATG--------------RLLGSVP--LPDACGVAPTDDG--FLVSSG-QGQL 279 (305)
T ss_pred CEEEEECCCCCEEEEEECCCC--------------CEeeccc--cCceeeeeecCCc--eEEeCC-CccE
Confidence 866677778999999998872 3332222 2346667776666 466655 3443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-06 Score=80.98 Aligned_cols=198 Identities=12% Similarity=0.177 Sum_probs=132.8
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCC
Q 015484 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVS 197 (406)
Q Consensus 123 ~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~ 197 (406)
|++.+ ..+|.|+.+|.|.+.+-.- +....++.+...+...-|.-++.++|++.+.|+ .+++|+++
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~---------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF---------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc---------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 45555 5799999999988877543 223556666666444445555655888887765 48999998
Q ss_pred CccCCceeeee---eee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC----CcccccccccCCCeeEEEe
Q 015484 198 ALAQDKVIDAM---HVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT----NQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 198 ~~~~~~~~~~~---~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~i~~ 266 (406)
.........++ ..+ .....++.+++.+. +-..+|+|-.+|.|.++.-.- +...........+|+.+.+
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 76433322222 111 12356788999986 678888999999999885321 1111112345789999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..++...+++++. ..|.+|.+.........+..|...++|..+++....+++++ ...+.+|+...
T Consensus 180 ~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~ 244 (933)
T KOG2114|consen 180 RSDGKSVLFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDG 244 (933)
T ss_pred ecCCceeEEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCC
Confidence 9888853444443 47999999855523445788888999999998876544433 45799999875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-05 Score=68.05 Aligned_cols=199 Identities=13% Similarity=0.164 Sum_probs=126.5
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
++.|.+....++++--..+.|..|+..++.. ..+.. .. ...+++...++.++ .+.. +.+.++|+.+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------~~~~~-~~-~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------EVIDL-PG-PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------EEEES-SS-EEEEEEECTTSEEE-EEET-TCEEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------EEEec-CC-CceEEEEccCCEEE-EEEc-CceEEEecCCCcE
Confidence 6789884443777777789999999887532 11121 22 67777773255554 4444 4456669988765
Q ss_pred cccccc-----cCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCE
Q 015484 251 QQRVKA-----HEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 251 ~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
...... .....+.+++.|+|. +.++.... |.|..++.. .+ +......-...+.|+|+|+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchhe
Confidence 333322 345678899999998 66665543 457777766 22 33333334567999999999877
Q ss_pred EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 318 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++-+..+.|..+++......... ...........+..-.+++..+|. +.++....+.|.+++....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC
T ss_pred eecccccceeEEEeccccccceee-------eeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc
Confidence 778888999999998653321110 122223333333477899999998 6777777899999998844
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9e-09 Score=94.22 Aligned_cols=207 Identities=15% Similarity=0.235 Sum_probs=137.7
Q ss_pred CCeeEEEecCCCC-CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe----cCCcEE
Q 015484 167 KEGYGLSWSPFKE-GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG----DDCQLM 241 (406)
Q Consensus 167 ~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----~dg~i~ 241 (406)
..+.|++++-... .+++.|..+|.|.+-.++..... ......++....++++|++-+.+.||+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 4566777765433 47889999999999988764332 11334567789999999998888887774 467899
Q ss_pred EEECCCC--ccc--ccccc-cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC
Q 015484 242 IWDLRTN--QTQ--QRVKA-HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 242 i~d~~~~--~~~--~~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|||+.++ .+. ..+.+ ......+++|..+.+ ++.+|.....+.++|+|...... ....+..+..+...|-...
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~--~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSV--SSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhh--hhhhhhhcccceecCCCCC
Confidence 9999876 221 12222 345567899997777 88889888899999999533212 2223456777888884444
Q ss_pred EEEEEeCCCcEEEEe-CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-CcEEEEeCC
Q 015484 317 VLASSADDRRLMVWD-LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-NTVQVWQMT 390 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-g~i~iw~~~ 390 (406)
++++.. ||.|-+|| .++.+.+....... -......+..++|+|....++++...| ++|+.+++.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~---------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRN---------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhC---------CCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 465554 99999999 44433222111000 011122488999999876667776655 678888875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-05 Score=78.10 Aligned_cols=206 Identities=16% Similarity=0.271 Sum_probs=128.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+.|.++.|.-+. +-++.+...|.|.+-|..+.. ......-...|.+++|+|++. .++-.+..+++.+.+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~---------~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLE---------LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccc---------eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEe
Confidence 579999999887 567778889999998777631 222233457899999999998 888888878877654
Q ss_pred CC----Ccc--------CCceee-----eeeeeec---------------------cCccEEEEEeeCCCCCEEEEEe--
Q 015484 196 VS----ALA--------QDKVID-----AMHVYEA---------------------HESVVEDVSWHLKNENLFGSAG-- 235 (406)
Q Consensus 196 ~~----~~~--------~~~~~~-----~~~~~~~---------------------~~~~i~~i~~~p~~~~~l~~~~-- 235 (406)
-. ..+ ..+.+. .-..+.+ ....=+.|.|-- ++.+||+..
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~ 216 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVE 216 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEe
Confidence 31 000 000000 0001110 011123478885 677887732
Q ss_pred --cC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCC--cEEecCCCCCeEE
Q 015484 236 --DD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTVP--LHILSSHTEEVFQ 307 (406)
Q Consensus 236 --~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~ 307 (406)
.+ ..|++||-+ +..-..-......-.+++|-|.|. ++++-. +|+.|.+|.-.....- ...+......|..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 33 789999976 443222233344456899999998 777654 3557989876543221 1112223344899
Q ss_pred EEEcCCCCCEEEE---EeCCCcEEEEeCCCCC
Q 015484 308 VEWDPNHETVLAS---SADDRRLMVWDLNRIG 336 (406)
Q Consensus 308 i~~~p~~~~~l~s---~~~dg~i~iwd~~~~~ 336 (406)
++|+.++. +|++ ......|++|-+.+..
T Consensus 295 L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 99999997 6766 4555569999987643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=81.27 Aligned_cols=183 Identities=14% Similarity=0.195 Sum_probs=126.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+.|++++. .+|+-|+-+|.|++++.+.. + .....|+.. ...|. ++++|+.||+|.|-
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~---------~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN---------P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIG 98 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCc---------c-ccccccccc------ccCCc-eEEEecCCCcEEEe
Confidence 46777777764 57999999999999998762 1 223334433 55577 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCC----CCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----NENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~ 268 (406)
.+-+.+.... .....++.+|+++|+ ..+.|++||.-| +.++.-+-... ...+....++|.++.|.
T Consensus 99 sl~~~~~~~~-------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 99 SLFTDDEITQ-------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred eccCCcccee-------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 8877654211 124678999999984 357788999888 77775332111 11345567899999997
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE------EVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
|. ++|-++.+| |++||...... +..+..... ....+.|.++.+ |+.| ...+|+|..++
T Consensus 170 -g~-lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -GN-LIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIK 233 (846)
T ss_pred -Cc-EEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEe
Confidence 55 888888776 99999987554 333332222 235678888774 4333 44578888887
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-06 Score=73.87 Aligned_cols=242 Identities=15% Similarity=0.226 Sum_probs=150.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC----
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN---- 189 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---- 189 (406)
-.-++..++|+|.| .+|++....| |.+|.-.... .+..+. ...|..+.|+|.+. +|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~~-V~~~~g~~~~--------~l~~~~--~~~V~~~~fSP~~k-YL~tw~~~pi~~p 97 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAAG-VECWGGPSKA--------KLVRFR--HPDVKYLDFSPNEK-YLVTWSREPIIEP 97 (561)
T ss_pred cCcchhheeecCcc-hheehhhccc-eEEccccchh--------heeeee--cCCceecccCcccc-eeeeeccCCccCh
Confidence 34678899999999 5787777666 9999887631 123332 34688999999998 998865543
Q ss_pred -----------eEEEEeCCCccCCceeeeeeeeeccCcc--EE-EEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccc
Q 015484 190 -----------KICLWDVSALAQDKVIDAMHVYEAHESV--VE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRV 254 (406)
Q Consensus 190 -----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~--i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~ 254 (406)
.+.+||+.++... ..+.....+ .. -+.|+- +..+.|-. -...++++++ ++.. ...+
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv------~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIV------FSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred hhccCCccccCceeEEeccCceeE------eeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCch
Confidence 4899999887542 222222222 33 567886 44444333 3346999997 3332 2222
Q ss_pred cc-cCCCeeEEEecCCCCc-EEEE-----EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC----
Q 015484 255 KA-HEKEVNYLSFNPYNEW-VLAT-----ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---- 323 (406)
Q Consensus 255 ~~-~~~~v~~i~~~~~~~~-~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---- 323 (406)
.. ....+...+|+|-++. .||. ++..+.+++|.+..... +.+...-...=..+.|++.|.++++-.-.
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-eeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 21 2366888899997431 3333 34567899999885433 43333333344578899999875543322
Q ss_pred ------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCcc
Q 015484 324 ------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 324 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+.|+++.... +.....-.++|.+++|.|.++. -+++|-.+..+.++++...+
T Consensus 248 nKsyfgesnLyl~~~~e~~---------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl 309 (561)
T COG5354 248 NKSYFGESNLYLLRITERS---------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL 309 (561)
T ss_pred ccceeccceEEEEeecccc---------------cceeccccccceeeeecccCCceeEEecccccceeecccccce
Confidence 2456667665311 1111144678999999998874 33444577888888888774
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.625 Sum_probs=35.0
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+++..+.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46778899999999999999988 799999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-08 Score=56.43 Aligned_cols=37 Identities=35% Similarity=0.677 Sum_probs=34.5
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
+...+.+|.+.|++|+|+|++. +|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 3678999999999999999987 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00055 Score=63.37 Aligned_cols=170 Identities=14% Similarity=0.228 Sum_probs=106.1
Q ss_pred EEEEEeeCCCCCEEEEEe----cCCc----EEEEECCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 218 VEDVSWHLKNENLFGSAG----DDCQ----LMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~----~dg~----i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
..++.|+-..++.+.+.. .+|. -.+|+....+.. .+ -.....|.+++++|+.. .|+.|+.||.|.+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvts-ipL~s~v~~ca~sp~E~-kLvlGC~DgSiiL 285 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTS-IPLPSQVICCARSPSED-KLVLGCEDGSIIL 285 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEE-EecCCcceEEecCcccc-eEEEEecCCeEEE
Confidence 456677765566665542 3443 335666544321 12 23577899999999998 8999999999999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe---cCCCCCe
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH---GGHKAKI 362 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v 362 (406)
||.... +.......-.++.++|+|+|. ++++|+..|.+.+||+.-..-...... ++..+.....+ -.+...+
T Consensus 286 yD~~~~---~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls-Ed~~P~~~L~Ls~yf~~~~~L 360 (545)
T PF11768_consen 286 YDTTRG---VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS-EDATPKSTLQLSKYFRVSSSL 360 (545)
T ss_pred EEcCCC---eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc-ccCCCccEEeeehhccCcchh
Confidence 998754 333444456789999999996 799999999999999875332222221 12222222222 2345567
Q ss_pred eeEEeCCCCC------------cEEEEEeCCCcEEEEeCCCccc
Q 015484 363 SDFSWNKNDP------------WVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 363 ~~~~~s~~~~------------~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.|.+... .+++-.=+.|-+-+-.+..|..
T Consensus 361 ~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~ 404 (545)
T PF11768_consen 361 VHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVF 404 (545)
T ss_pred heeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccc
Confidence 7888884432 1233333445555555555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=76.22 Aligned_cols=195 Identities=14% Similarity=0.205 Sum_probs=126.7
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-----EEEEECCC
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-----LMIWDLRT 247 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-----i~i~d~~~ 247 (406)
+|++.+. .++.|+.+|.|.+.+-. ++.++.++.+...+...-+.-....+|++.+.|+. +++||+..
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 3566565 99999999999887633 22335555666553333344335568888776654 89999874
Q ss_pred Cc------cc--ccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCCCCcEEecCCCCCeEEEEEc
Q 015484 248 NQ------TQ--QRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR---KMTVPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 248 ~~------~~--~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~i~~~ 311 (406)
-+ ++ ..+ .....++.+++.+.+-. .+|+|-.+|.|..+.-. ..............+|+.+.+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 31 11 011 12356788899998866 89999999999988532 2122223333446799999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 312 PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++..++.++. -..|.+|.+... ...+..+..|...+.+.++++.... +++++ +..|.+|+.+.
T Consensus 181 ~d~~s~lFv~T-t~~V~~y~l~gr-------------~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVAT-TEQVMLYSLSGR-------------TPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEe-cceeEEEEecCC-------------CcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCC
Confidence 99876333333 457999998741 1234446667778999999886653 44444 45799998875
Q ss_pred c
Q 015484 392 S 392 (406)
Q Consensus 392 ~ 392 (406)
.
T Consensus 245 ~ 245 (933)
T KOG2114|consen 245 R 245 (933)
T ss_pred c
Confidence 4
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00024 Score=63.61 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=108.6
Q ss_pred eEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 119 NRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
..++++|+|+.++++--. +..|.+.|+...+. +..+.. .+...-...+. .. ...-+.||......+.
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--------v~ei~v-p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--------VRMMDV-PDCYHIFPTAN-DT--FFMHCRDGSLAKVGYG 175 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--------EEEEeC-CCCcEEEEecC-Cc--cEEEeecCceEEEEec
Confidence 378999999544434324 78999999998432 232322 11111222222 11 1222345555554444
Q ss_pred CccCCceeeeeeeeeccCccEEE-EEeeCCCCCEEEEEecCCcEEEEECCCCc-----ccccccc-------cCCCeeEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVED-VSWHLKNENLFGSAGDDCQLMIWDLRTNQ-----TQQRVKA-------HEKEVNYL 264 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~-------~~~~v~~i 264 (406)
...... ......+.....++.. -.|.+.++..+.+... |.|.+.|+.... ....+.. ....+.-+
T Consensus 176 ~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 322211 1111111110011100 0345535566655555 999999964432 2222210 12333449
Q ss_pred EecCCCCcEEEEEe---------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATAS---------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~ 334 (406)
+++|+++.+++... ..+.|.++|..+.+. +..+.. ...+..++++|+++ .++++...++.|.++|..+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99999984444231 124799999988665 554443 45789999999998 5444555789999999987
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.1e-08 Score=91.23 Aligned_cols=198 Identities=15% Similarity=0.209 Sum_probs=132.9
Q ss_pred CeEEEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
+|+..+.+ .|....+|++|+-.. +.|++|+-.|.|++|++.++.. ......|.++|+-+.=+.+|.-.|.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~--------e~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSM--------EESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hcccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccc--------cccccccccccccccccCCcceeee
Confidence 34444444 477899999999877 6899999999999999998543 4557789999999999999983344
Q ss_pred EecCCC-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc----cccC
Q 015484 184 SGSHDN-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----KAHE 258 (406)
Q Consensus 184 s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~ 258 (406)
+++... -..+|++.... .+.+.+ ..-.++.|+.. ...-+.|+......+||+.++..+.++ .+..
T Consensus 1161 sss~S~PlsaLW~~~s~~-----~~~Hsf----~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTG-----GPRHSF----DEDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eccccCchHHHhcccccc-----Cccccc----cccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 443333 46789987621 122222 23456788752 233344555567899999999887764 1222
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..-++..|+|... +++ .|| .+||.|... .++.|...+.. ..=.|+|.|.. ++.-+ .|||+++.
T Consensus 1231 y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~-aIh~FD~ft~~-~~G~FHP~g~e-VIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDT-LIL---NDG--VLWDVRIPE-AIHRFDQFTDY-GGGGFHPSGNE-VIINS-----EIWDMRTF 1293 (1516)
T ss_pred hhccccccCCCcc-eEe---eCc--eeeeeccHH-HHhhhhhheec-ccccccCCCce-EEeec-----hhhhhHHH
Confidence 3337788999988 553 455 479999863 36666543322 22369999975 44443 48999874
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=76.00 Aligned_cols=143 Identities=18% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEEeCCCccC
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
.| .++++|+.||+|.|-.+.+... ...+ ....++.+|+++|+ ....+++|+.-| +.++.-+-.+.
T Consensus 82 ~G-ey~asCS~DGkv~I~sl~~~~~--------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn 150 (846)
T KOG2066|consen 82 EG-EYVASCSDDGKVVIGSLFTDDE--------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN 150 (846)
T ss_pred CC-ceEEEecCCCcEEEeeccCCcc--------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC
Confidence 45 6899999999999999887432 2222 34568899999997 223799999988 77775433222
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCe------eEEEecCCCCcEEE
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV------NYLSFNPYNEWVLA 275 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------~~i~~~~~~~~~l~ 275 (406)
... .......++|.++.|. ++++|-++++| |++||+.+++.+..+......+ ..+.|.+... |+
T Consensus 151 k~~----v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LV 220 (846)
T KOG2066|consen 151 KDS----VVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LV 220 (846)
T ss_pred ccc----eeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EE
Confidence 111 1344567899999996 78998888777 9999999988777664333333 3567776654 66
Q ss_pred EEeCCCcEEEEeCCC
Q 015484 276 TASSDTTVALFDMRK 290 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~ 290 (406)
.|=.| +|+|..++.
T Consensus 221 IGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 221 IGWGD-SVKICSIKK 234 (846)
T ss_pred EecCC-eEEEEEEec
Confidence 66544 788888873
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.3e-06 Score=74.70 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=65.7
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+..+++++.|.|++++|+. ..|+.|+.||.|.+||.... ...+....-..+.++|+|+|. .+++|+.
T Consensus 252 svtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~ga-i~~V~s~ 319 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGA-IFVVGSE 319 (545)
T ss_pred EEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCc-EEEEEcC
Confidence 34567899999999999998 57889999999999999773 222333445578999999998 9999999
Q ss_pred CCeEEEEeCCCc
Q 015484 188 DNKICLWDVSAL 199 (406)
Q Consensus 188 dg~i~iwd~~~~ 199 (406)
.|.+.+||+.-.
T Consensus 320 qGelQ~FD~ALs 331 (545)
T PF11768_consen 320 QGELQCFDMALS 331 (545)
T ss_pred CceEEEEEeecC
Confidence 999999998643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00044 Score=58.87 Aligned_cols=204 Identities=13% Similarity=0.193 Sum_probs=112.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+-...+..|+|.|+...++|+....+.|..++.+.. ......+.+ .+..-+|++..++. ++++--.++.+.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-------vlr~i~l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~ 89 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-------VLRRIPLDG-FGDYEGITYLGNGR-YVLSEERDQRLY 89 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS--SSEEEEEE-STTE-EEEEETTTTEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-------EEEEEeCCC-CCCceeEEEECCCE-EEEEEcCCCcEE
Confidence 344679999999987788899888999888887531 111222333 34567888886665 666555689999
Q ss_pred EEeCCCccCCceeeeeee-----eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---Cccccc--------ccc
Q 015484 193 LWDVSALAQDKVIDAMHV-----YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQR--------VKA 256 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~ 256 (406)
++++.............. ...++..+..++|+|.+++++ .+-...-..+|.++. ...+.. ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 999854332211111111 123456799999999655555 556666666776654 111111 122
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------CCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------EEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
....+.+++++|....+++....+..|..+|.. ++ ++..+.-.. ...-.|+|.++|. |...++-+..
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEpNlf 244 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEPNLF 244 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCCceE
Confidence 345678999999887788888888899999944 33 233333222 3578899999985 4455555555
Q ss_pred EEE
Q 015484 328 MVW 330 (406)
Q Consensus 328 ~iw 330 (406)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00031 Score=60.81 Aligned_cols=212 Identities=13% Similarity=0.134 Sum_probs=127.4
Q ss_pred CeeEEEecCCCCCeEEEecCCCe-EEEEeCCCccCCceeee--eeeeeccCccEEEEEeeCCCCCEEEEE-----ecCCc
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNK-ICLWDVSALAQDKVIDA--MHVYEAHESVVEDVSWHLKNENLFGSA-----GDDCQ 239 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~p~~~~~l~~~-----~~dg~ 239 (406)
...+++.+|.....++.+-.-|+ ..+||..++.....+.. -..|.+| -+|++ ++++|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcC-CCCEEEEeccccCCCcEE
Confidence 34567788865546666766664 67888888754332211 1223333 46898 56666554 34688
Q ss_pred EEEEECC-CCcccccccccCCCeeEEEecCCCCcEEEEEe------------------CCCcEEEEeCCCCCCCcEE--e
Q 015484 240 LMIWDLR-TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS------------------SDTTVALFDMRKMTVPLHI--L 298 (406)
Q Consensus 240 i~i~d~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~--~ 298 (406)
|-+||.. +-+.+..+..+.-.-..+.+.|+++ .|+++. .+..+...|.+++.. +.. +
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~L 156 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-LEQVEL 156 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-eeeeec
Confidence 9999998 4555667776776677888999997 455442 123444455555443 222 3
Q ss_pred --cCCCCCeEEEEEcCCCCCEEEEEeCCCc-------EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 299 --SSHTEEVFQVEWDPNHETVLASSADDRR-------LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 299 --~~h~~~v~~i~~~p~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
..|...|..+++.++|. +++..-..|. |-+++.... ..... .+... ...-...+-+|++++
T Consensus 157 p~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~---~p~~~---~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA---LRLLP---APEEQ---WRRLNGYIGSIAADR 226 (305)
T ss_pred CccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc---ceecc---CChHH---HHhhCCceEEEEEeC
Confidence 34777899999999985 3333322221 222222110 00000 00000 112345789999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcccCCCc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSIYRDDD 398 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 398 (406)
++.++.+|+-.-|.+.+||..++.+....
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 99977788888899999999999876543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00022 Score=71.10 Aligned_cols=203 Identities=13% Similarity=0.275 Sum_probs=127.8
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
...|.++.|..+.. .++.+..+|.|.+-|..+... .....-...|.+++|+| +...++..+..+++.+.+-
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~-------eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLEL-------EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccce-------eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEec
Confidence 36899999999887 788888899999998777432 22223456899999999 6788888887777766432
Q ss_pred C----CCccc-------------------ccccc---------------------cCCCeeEEEecCCCCcEEEEE----
Q 015484 246 R----TNQTQ-------------------QRVKA---------------------HEKEVNYLSFNPYNEWVLATA---- 277 (406)
Q Consensus 246 ~----~~~~~-------------------~~~~~---------------------~~~~v~~i~~~~~~~~~l~~~---- 277 (406)
. ..+.+ ..+.+ ..+.=++|+|--+|+ ++|+.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~ 217 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVES 217 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEec
Confidence 0 00000 01110 011124589999998 77773
Q ss_pred -eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 278 -SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 278 -~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
.....|+|||.. +.. -..-....+.-.+++|-|.|. ++++-. .|+.|.+|.-+.... .....
T Consensus 218 ~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~h-----------g~f~l 283 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRH-----------GEFVL 283 (1265)
T ss_pred cCCceeEEEeccc-chh-hcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccc-----------ccccc
Confidence 223789999976 221 111112233456799999886 576643 366788887654221 11111
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEE---EeCCCcEEEEeCCCcc
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISS---VADDNTVQVWQMTDSI 393 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s---~~~dg~i~iw~~~~~~ 393 (406)
........|..++|+.++. +|+. ......|++|-+.+-.
T Consensus 284 ~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 1222233489999999998 6766 4445559999887653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00039 Score=64.26 Aligned_cols=227 Identities=14% Similarity=0.054 Sum_probs=122.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..+++++.+|.++.+|..++... ..... ...+.+.... .+. .++.++.+|.|..||..+++........
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~--------W~~~~-~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKEL--------WRAKL-SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEe--------eeecc-CceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 35677888999999998774331 11111 1112111111 134 6777888999999999887653322110
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC----CC---eeEEEecC--CCCcEEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----KE---VNYLSFNP--YNEWVLATASS 279 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~---v~~i~~~~--~~~~~l~~~~~ 279 (406)
........ ..+.... + ..++.+..+|.+..+|+++++.+....... .. +..+.-+| .+. .+.+++.
T Consensus 175 ~~~~~~~~-~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~~ 249 (377)
T TIGR03300 175 TPALTLRG-SASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVSY 249 (377)
T ss_pred CCceeecC-CCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEEc
Confidence 00000000 0111122 2 356678888999999999887654331100 00 00010111 234 6777888
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH- 358 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h- 358 (406)
+|.+..||..+++. +-.... . ....... .+. .++.++.||.+..+|..+... +......
T Consensus 250 ~g~l~a~d~~tG~~-~W~~~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~--------------~W~~~~~~ 309 (377)
T TIGR03300 250 QGRVAALDLRSGRV-LWKRDA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE--------------LWKNDELK 309 (377)
T ss_pred CCEEEEEECCCCcE-EEeecc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE--------------EEcccccc
Confidence 99999999988654 322221 1 1112222 233 477778899999999976322 1111000
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
......... .+. .+++++.+|.|++++..++..
T Consensus 310 ~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 310 YRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCE
Confidence 011111122 234 577888999999999987754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00055 Score=58.73 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=105.2
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KA 256 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~ 256 (406)
+. .+++++.++.|..||..+++....... ...+...... .+..++.++.++.++.+|+++++.+... ..
T Consensus 36 ~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-------~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 36 GG-RVYVASGDGNLYALDAKTGKVLWRFDL-------PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp TT-EEEEEETTSEEEEEETTTSEEEEEEEC-------SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred CC-EEEEEcCCCEEEEEECCCCCEEEEeec-------cccccceeee--cccccccccceeeeEecccCCcceeeeeccc
Confidence 55 788888999999999988764322211 1111111111 2445556668889999999999987763 22
Q ss_pred cC---CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC----------e-EEEEEcCCCCCEEEEEe
Q 015484 257 HE---KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE----------V-FQVEWDPNHETVLASSA 322 (406)
Q Consensus 257 ~~---~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~----------v-~~i~~~p~~~~~l~s~~ 322 (406)
.. ...........+. .++++..++.|..+|+++++. +......... + ..+.+. ++ .+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSS 180 (238)
T ss_dssp SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEEC
T ss_pred cccccccccccCceEecC-EEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEc
Confidence 11 1111122222255 677888899999999998765 4444333321 1 222333 33 366666
Q ss_pred CCCc-EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 323 DDRR-LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 323 ~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++. +.+ |+.+. +.+.... ...+..+ ....+. .++.++.++.|..||+.++..
T Consensus 181 ~~g~~~~~-d~~tg--------------~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 GDGRVVAV-DLATG--------------EKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CTSSEEEE-ETTTT--------------EEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEE
T ss_pred CCCeEEEE-ECCCC--------------CEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCE
Confidence 6775 555 88872 2222222 1223331 234555 466666899999999999853
|
... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=70.70 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCc-cEEEEEeeC----CCCCEEEEEecCCcEEEEECCCCc--cccc-c--c
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHES-VVEDVSWHL----KNENLFGSAGDDCQLMIWDLRTNQ--TQQR-V--K 255 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~p----~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--~ 255 (406)
.....|.-.|++.++.. ..+..+.. +|.+++-.. ..+.--+.|-.+..+..||+|-.. .+.. . -
T Consensus 501 ~~~~~ly~mDLe~GKVV------~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV------EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCCceEEEecCCCcEE------EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 45578888999988643 33343433 355554221 112233467778889999999643 2211 1 1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
.......|++-..+| .||+|+.+|.|++||- .+......+.+-..+|.+|..+.+|+++|+|| +..+.+++..
T Consensus 575 ~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred ccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 234567788887776 5999999999999994 33444455667788999999999999877666 5678888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-05 Score=68.10 Aligned_cols=246 Identities=11% Similarity=0.116 Sum_probs=125.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------------------cCCCCCcee
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------------------QDDCDPDLR 161 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------------------~~~~~~~~~ 161 (406)
.|+.+.|.++. .-||+|...|.|.||.....+... .....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 469999999999999875432211 001223344
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee---eeccCccEEEEEeeC----CC---CCEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV---YEAHESVVEDVSWHL----KN---ENLF 231 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~p----~~---~~~l 231 (406)
+....++|++++.|.-| +++.|..+|.+.|.|++.......- .+.. -......++++.|.. .+ .-.+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 44557899999998543 8999999999999999765322110 0111 111234677888752 11 2467
Q ss_pred EEEecCCcEEEEECCC-C--cccccc----cccCCCeeEEE-ecCC-C-------------------CcEEEEEeCCCcE
Q 015484 232 GSAGDDCQLMIWDLRT-N--QTQQRV----KAHEKEVNYLS-FNPY-N-------------------EWVLATASSDTTV 283 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~-~--~~~~~~----~~~~~~v~~i~-~~~~-~-------------------~~~l~~~~~dg~i 283 (406)
++|++.|.+.+|.+.- . .....+ ..+.++|..|. ++.+ | +.++++++ +..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence 7889999999998752 1 111111 23455555554 3222 1 11444444 5679
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcC----CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDP----NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
+++...+.+..-+.+ ........+.+-+ .+...|++-..+|.|++|.+....+..... .......
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~----------l~~~~d~ 306 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS----------LPPPLDS 306 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-----------SS---H
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc----------CCCcccc
Confidence 999988765423333 2222333444531 233468888999999999998743221100 0001122
Q ss_pred CCeeeEEeCCCCCcEEEEEe
Q 015484 360 AKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~ 379 (406)
..+...+++++|. +++-.+
T Consensus 307 ~~~~~ssis~~Gd-i~~~~g 325 (395)
T PF08596_consen 307 RRLSSSSISRNGD-IFYWTG 325 (395)
T ss_dssp HHHTT-EE-TTS--EEEE-S
T ss_pred ccccccEECCCCC-EEEEeC
Confidence 3455677888888 455544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00043 Score=64.00 Aligned_cols=220 Identities=12% Similarity=0.004 Sum_probs=118.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCe-----eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCce
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEG-----YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV 204 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 204 (406)
.++.++.+|.++.||..++.. ........... .+.... +. .++.+..+|.+..+|..+++....
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~--------~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGER--------LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEEEECCCCeEEEEEcCCCce--------eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeee
Confidence 466677899999999987432 11111111100 011111 33 678888889999999988754321
Q ss_pred eeeeeeeeccC--ccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 205 IDAMHVYEAHE--SVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 205 ~~~~~~~~~~~--~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
... ....+.. .....+.-+| ..+..+++++.+|.++.+|.++++.+..... ........ .+. .+++++.+|
T Consensus 216 ~~~-~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~--~~~-~vyv~~~~G 289 (377)
T TIGR03300 216 QRV-ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV--DDN-RLYVTDADG 289 (377)
T ss_pred ecc-ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE--eCC-EEEEECCCC
Confidence 110 0000000 0000000011 0234566778899999999999876554431 11112222 344 677788899
Q ss_pred cEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC
Q 015484 282 TVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA 360 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 360 (406)
.+..+|..+++. +-.... .......... .+. .+++++.+|.|.++|..+. +.+.....+..
T Consensus 290 ~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG--------------~~~~~~~~~~~ 351 (377)
T TIGR03300 290 VVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDG--------------SFVARLKTDGS 351 (377)
T ss_pred eEEEEECCCCcE-EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCC--------------CEEEEEEcCCC
Confidence 999999987654 322211 1111222222 233 5888999999999998762 34444443332
Q ss_pred Ce-eeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 361 KI-SDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 361 ~v-~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.+ ....+. ++. |+.++.||.|..+
T Consensus 352 ~~~~sp~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE-CCE--EEEEeCCceEEEe
Confidence 22 222222 333 5677789988776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-05 Score=74.38 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+++++|+|.. .+||.|-..|.+.+|...+.. .......|..+|..+.||++|. .|+++..-|.+.+|..
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e--------~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE--------THTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCCce--------eeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEe
Confidence 46679999987 789999999999999988732 1233446999999999999999 9999999999999987
Q ss_pred CC
Q 015484 197 SA 198 (406)
Q Consensus 197 ~~ 198 (406)
..
T Consensus 131 d~ 132 (1416)
T KOG3617|consen 131 DV 132 (1416)
T ss_pred ee
Confidence 63
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-05 Score=73.53 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=99.9
Q ss_pred CCCCEEEEE-ecCCcEEEEECCCCcccccccccCCC-eeEEEecC-----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe
Q 015484 226 KNENLFGSA-GDDCQLMIWDLRTNQTQQRVKAHEKE-VNYLSFNP-----YNEWVLATASSDTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 226 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (406)
.+.++++.- .....|+-.|+..|+.+.....+... |..++-.. ... -.+.|-.+..+..||.|-....+..-
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCceeec
Confidence 345555443 45678999999999999888766543 55443221 122 34567778899999999754322221
Q ss_pred c----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 299 S----SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 299 ~----~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
. .......|++-+.+| .||.|+.+|.||+||--. . .....+.+-..+|..|..+.+|+|+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g--~------------~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLG--K------------RAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccc--h------------hhhhcCCCCCCCeeEEEecCCCcEE
Confidence 1 234467888888777 499999999999999422 1 1222334556899999999999998
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
|||+ +..|.+++..
T Consensus 634 laTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 634 LATC--KTYLLLIDTL 647 (794)
T ss_pred EEee--cceEEEEEEe
Confidence 8886 5678888763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00015 Score=67.07 Aligned_cols=163 Identities=14% Similarity=0.179 Sum_probs=99.2
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEe--cCC-CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSG--SHD-NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~--~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+..-...+..-+|+|++..+.... ... ..+.+++++.+....... + .+.-..-+|+|++..++++...||
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~---~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----F---NGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----c---CCccCCccCCCCCCEEEEEECCCC
Confidence 333445667778999887322222 122 458999999876543321 2 233344579998777777777777
Q ss_pred c--EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 239 Q--LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 239 ~--i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
. |.++|+..+.. ..+....+.-..-.|+|+|++++++.+..|. |.++|+.... ...+......-..-.|+|+|
T Consensus 261 ~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~~SpdG 337 (425)
T COG0823 261 SPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPVWSPDG 337 (425)
T ss_pred CccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCccCCCCC
Confidence 6 55567766653 3343333333466899999977777777774 5555555433 34444333333377899999
Q ss_pred CCEEEEEeCCCc--EEEEeCCC
Q 015484 315 ETVLASSADDRR--LMVWDLNR 334 (406)
Q Consensus 315 ~~~l~s~~~dg~--i~iwd~~~ 334 (406)
+.++.....+|. |.+.|+..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CEEEEEeccCCceeeEEeccCC
Confidence 975555544555 55555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00029 Score=67.62 Aligned_cols=110 Identities=15% Similarity=0.286 Sum_probs=80.2
Q ss_pred eeEEEEcCCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 118 VNRARCMPQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
-+-+.|+|..| ++|+++. .|.|-||--... .....+.+.| +++++|+|..- .|+.|-.-|.+.+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE-------Pqr~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFADTGE-------PQRDVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEecCCC-------CCccccccee---hhhhccChHHH-HHhhccccceeEE
Confidence 34457999886 5766653 578888865442 1112233333 45799999776 8999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
|..++.+.. .....|+.+|..+.|++ ++..++++..-|.+.+|...
T Consensus 86 ~~~~~~e~h------tv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETH------TVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceee------eeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 998775432 22346899999999999 67888899999999999776
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00041 Score=65.29 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=95.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.--++...+ .+++.|+..|.+++|+...+... .....+-.+.+..+..+++.. ++|+|+..|.|.++-
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~-------~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR-------KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ 104 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchhhh-------cccccCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence 334444455555 68999999999999998874321 222223445566677888777 899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc----ccccccccCCCeeEEEec
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ----TQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~i~~~ 267 (406)
++........-....-..|+..|++++|++ ++..+.+|...|.|.+-.+.... ..+.+....+.|-.+...
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 887443322211122234788999999998 67888899999999998887621 122333345666666554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=76.37 Aligned_cols=166 Identities=13% Similarity=0.202 Sum_probs=117.0
Q ss_pred eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-cE
Q 015484 205 IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-TV 283 (406)
Q Consensus 205 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-~i 283 (406)
++....+..|....+|++|+- +.+.++.|+..|.|++|++.+|........|.+.|+-+.-+.+|..+|.+.+... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999997 7888999999999999999999999999999999999999999995555444444 56
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
.+|++.....+.+.+.. -.++.|+..... -+.|.......|||+.+....++.+... .+....-.
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~----------~~~~y~~n 1234 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDT----------VTSSYSNN 1234 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcc----------hhhhhhcc
Confidence 89999876666666654 356788776432 3444445678999999865444322111 11111225
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 364 DFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+.|+|+.. ++. +|| .+||+...
T Consensus 1235 ~a~FsP~D~-LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1235 LAHFSPCDT-LIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ccccCCCcc-eEe---eCc--eeeeeccH
Confidence 677888887 343 466 35777653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00077 Score=63.54 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCce-eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDL-RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.+.+..+..+++. .++|.|+..|.|.|+.++...... ..... .-..|...|++++|++++. .+++|...|.|.+
T Consensus 76 ~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~---~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 76 TGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRD---LDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVL 150 (726)
T ss_pred cceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCc---ceeeccccccCCceEEEEEeccccc-EEeecCCCceEEE
Confidence 3555666677776 789999999999999998732211 11111 1123778999999999999 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
-.++... ..+-..+.+....+.|-.+... ...+|++... ...+++++.++
T Consensus 151 ~~L~s~~--~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 151 TELDSRQ--AFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred EEechhh--hhccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence 8887721 1111123334456778777765 3555554443 23455665443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0096 Score=50.82 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=108.8
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
.+.+-...+.+|+|+|+.+.++++....+.|..++.+ ++. ++. ..+.+ .+....|++.. ++.++++--.++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---lr~-i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---LRR-IPLDG-FGDYEGITYLG-NGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---EEE-EE-SS--SSEEEEEE-S-TTEEEEEETTTTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---EEE-EeCCC-CCCceeEEEEC-CCEEEEEEcCCCcE
Confidence 3445556799999999876477777788888888864 322 221 11222 34577888873 44444444458899
Q ss_pred EEEECCCCcc------cccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC--CCCCcEE--------ec
Q 015484 241 MIWDLRTNQT------QQRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK--MTVPLHI--------LS 299 (406)
Q Consensus 241 ~i~d~~~~~~------~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~--------~~ 299 (406)
.++++..... ...+ ..++..+-.++|+|.+..++ ++-...-..+|.++. ....+.. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9998843221 1111 23456688999999887444 455555666776654 1111111 11
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-C------CCCeeeEEeCCCCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-H------KAKISDFSWNKNDP 372 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h------~~~v~~~~~s~~~~ 372 (406)
.....+.+++++|....+++.+.....|.++|... .. .-...+.. . -...-.|+|.++|.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~-----------~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG--RV-----------VSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT----E-----------EEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCC--CE-----------EEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 23346889999999888888888999999999543 11 11122221 1 12467899999997
Q ss_pred cEEEEEeCCCcEEEE
Q 015484 373 WVISSVADDNTVQVW 387 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw 387 (406)
+.+ .++-+..+++
T Consensus 235 -LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 235 -LYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEE-EETTTEEEEE
T ss_pred -EEE-EcCCceEEEe
Confidence 444 4566666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00048 Score=63.80 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=101.1
Q ss_pred CccEEEEEeeCCCCCEEEEEecC---CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDD---CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMR 289 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~ 289 (406)
...+..-+|+|....+....-.. ..+.++|+.+++...... ..+.-...+|+|+|+.++++...|| .|.++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44566677888655554443322 359999999887654443 2334445789999998888888888 56777887
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.... ..+....+.-..=.|+|+|++++.+.+..|.-.||-+...+... ...+..+... ..-.|+|
T Consensus 271 ~~~~--~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------~riT~~~~~~--~~p~~Sp 335 (425)
T COG0823 271 GKNL--PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----------TRLTFSGGGN--SNPVWSP 335 (425)
T ss_pred CCcc--eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------eEeeccCCCC--cCccCCC
Confidence 6553 23333333333568999999988888888887777665432211 1112222121 2678999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCCcc
Q 015484 370 NDPWVISSVADDNT--VQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~--i~iw~~~~~~ 393 (406)
+|++++.....+|. |.+.++.++.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCC
Confidence 99976666544454 5555554443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.018 Score=53.58 Aligned_cols=174 Identities=10% Similarity=0.117 Sum_probs=87.0
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee-eeeeeeccCcc
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID-AMHVYEAHESV 217 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 217 (406)
.|.||+.... ++..+.-..+.+.++.|+.+. .|+....||.++++|+.... .-.+. ......-....
T Consensus 62 ~I~iys~sG~---------ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~ 129 (410)
T PF04841_consen 62 SIQIYSSSGK---------LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECR 129 (410)
T ss_pred EEEEECCCCC---------EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCccccc
Confidence 4888888763 233333233789999998854 57777799999999986332 00000 00000111111
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccc---cc-------cCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRV---KA-------HEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
+..+.+. +..++ .-..++.+.+..--... ....+ .. .........++.+.. ..+....++.+.+.
T Consensus 130 i~~~~~~--~~Giv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i 205 (410)
T PF04841_consen 130 IFAIWFY--KNGIV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYII 205 (410)
T ss_pred ccccccC--CCCEE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEE
Confidence 2222222 12233 23344444443322111 11111 00 000000122333444 34444445566644
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+-..... +. ..+++..|+.||+++ ++|.-..+|.+.|....-
T Consensus 206 ~~~~~~~----i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 206 DENSFKQ----ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred Ecccccc----cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc
Confidence 4332111 21 246899999999998 588888899998887543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0035 Score=59.67 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=92.7
Q ss_pred cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-------------------------------------
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS------------------------------------- 278 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~------------------------------------- 278 (406)
..+.+.+.|..+.+...++.... ....++++|++.++++++.
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34567777777766555543222 3355677777773333321
Q ss_pred --CCCcEEEEeCCC----CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 279 --SDTTVALFDMRK----MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 279 --~dg~i~vwd~~~----~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.++.|.+.|.++ ....+..+ .-......+.++|+|+++++++..+.+|.|.|+.+........ . +....++
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~-~~~~~vv 368 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-I-KPRDAVV 368 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-C-CccceEE
Confidence 124577777776 22222222 2345678899999999988888889999999998754321100 0 0001112
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
....- .......+|.++|. ...|---|..|..|++...
T Consensus 369 aevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred Eeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHH
Confidence 22211 22345678999987 7888889999999999873
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0046 Score=57.66 Aligned_cols=226 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-...-.+..+.++|+++ ++++ ..+|.-.|+..... ..- ..+....+.|.+.+ .+|+-...++
T Consensus 28 lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~-----------r~k--~~G~g~~~vw~~~n--~yAv~~~~~~ 90 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAW-----------RNK--AFGSGLSFVWSSRN--RYAVLESSST 90 (443)
T ss_dssp EEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTT-----------EEE--EEEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred CCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCC-----------ccc--ccCceeEEEEecCc--cEEEEECCCe
Confidence 333556689999999994 5555 55788888884331 111 12445678899833 5777777889
Q ss_pred EEEE-eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 191 ICLW-DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iw-d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|.++ ++... ..+.++ ....+..|- ++.+|+..+. +.|.+||..+++.+..+... +|..+.|+++
T Consensus 91 I~I~kn~~~~-~~k~i~-------~~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 91 IKIYKNFKNE-VVKSIK-------LPFSVEKIF----GGNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEEEETTEE--TT------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEEEcCccc-cceEEc-------CCcccceEE----cCcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 9996 33221 111111 112344433 2666655554 48999999999998888643 3899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC----------CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 270 NEWVLATASSDTTVALFDMRKM----------TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
++ +++..+.+ .+.+++.... +..+..+..-...|.+..|..+ -++.|.. . .++-+ ..+.
T Consensus 156 g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkYl--~~Ge--- 224 (443)
T PF04053_consen 156 GE-LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKYL--VNGE--- 224 (443)
T ss_dssp SS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEEE--ETTE---
T ss_pred CC-EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEEE--EcCC---
Confidence 99 77777655 6887765432 0013333332567888888865 3444443 3 66652 2210
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...+..+ ..++.=+...+... .+.....|+.|..+.++..
T Consensus 225 ---------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 ---------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred ---------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 1222222 23445555566444 5667778888888776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00093 Score=61.29 Aligned_cols=213 Identities=8% Similarity=0.063 Sum_probs=107.6
Q ss_pred eEEEEEee-cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC---CCC--
Q 015484 106 VEIAQKIR-VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP---FKE-- 179 (406)
Q Consensus 106 ~~~~~~~~-h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~-- 179 (406)
|.....+. ..++|++++.+.-| ++|.|..+|.+.|.|++...............-......++++.|.- .+.
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 55554444 46999999998777 79999999999999997743322111111001112345688888863 121
Q ss_pred --CeEEEecCCCeEEEEeCCC-ccCCceeeeeeeeeccCccEEEEE-eeCCCC-------------------CEEEEEec
Q 015484 180 --GYLVSGSHDNKICLWDVSA-LAQDKVIDAMHVYEAHESVVEDVS-WHLKNE-------------------NLFGSAGD 236 (406)
Q Consensus 180 --~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~i~-~~p~~~-------------------~~l~~~~~ 236 (406)
-.|++|...|.+.+|.+.- ...............+.++|..|. ++.+.+ .-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 2688999999999998752 222222222222224555655554 322111 12334444
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEec----CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC----CCeEEE
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN----PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT----EEVFQV 308 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~i 308 (406)
+..++++...+.+..............+.+- ..+...|++-..+|.|++|.+...+. +....... ..+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-i~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-IKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E-EEEEE-SS---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH-hhcccCCCcccccccccc
Confidence 6789999988776644433121222333442 12334788888999999999988665 44443322 234456
Q ss_pred EEcCCCCCEEEEEe
Q 015484 309 EWDPNHETVLASSA 322 (406)
Q Consensus 309 ~~~p~~~~~l~s~~ 322 (406)
.++++|+ +++-.+
T Consensus 313 sis~~Gd-i~~~~g 325 (395)
T PF08596_consen 313 SISRNGD-IFYWTG 325 (395)
T ss_dssp EE-TTS--EEEE-S
T ss_pred EECCCCC-EEEEeC
Confidence 6788887 444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0071 Score=54.52 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=106.5
Q ss_pred CeEEEecC----------CCeEEEEeCCCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 180 GYLVSGSH----------DNKICLWDVSAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 180 ~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.+|+.|.. .|.|.++++... .....++.+... ...++|++++-- ++.++++. .+.|.+|++...
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~ 117 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNS 117 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETT
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee--cCEEEEEEccCc
Confidence 37776643 289999999884 222234333333 347889998866 35544333 478999999887
Q ss_pred c-ccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 249 Q-TQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 249 ~-~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
+ ....- ......+.++... ++ ++++|.....+.++..+.....+..+ ......++++.+-++++ .++.+..+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~ 193 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKD 193 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETT
T ss_pred ccchhhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCC
Confidence 7 32221 1123356666554 55 88899888888887555422212222 23355689999987775 68999999
Q ss_pred CcEEEEeCCCCCcccccccccCCC--CeeEEEecCCCCCeeeE---EeCCC--CCc-----EEEEEeCCCcEEEE
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGP--PELLFSHGGHKAKISDF---SWNKN--DPW-----VISSVADDNTVQVW 387 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~---~~s~~--~~~-----~l~s~~~dg~i~iw 387 (406)
|.+.++.......... ++. ......+. ....|+++ ++.|. +.. .++-++.+|.|.+.
T Consensus 194 gnl~~l~~~~~~~~~~-----~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSR-----DGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTT-----TTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccc-----cccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999998864211110 111 11222222 23457776 55552 221 36667788988744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.012 Score=52.02 Aligned_cols=227 Identities=9% Similarity=-0.004 Sum_probs=125.4
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 201 (406)
.|.|+...++.+--..+.|.-|+..+.. ...+. +.+.+.++.....+. .|+++.. -+.+++++++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~---------~~~~~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK---------KRVFP-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc---------eEEEE-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCce
Confidence 4677776677777778888888887532 12222 233344544444444 5665543 356667654432
Q ss_pred Cceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec-----------CCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 202 DKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD-----------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 202 ~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
...+. ..... .....+++...|+ +.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+|+
T Consensus 98 ~t~~~--~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 98 ITLLA--EPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred eEEec--cccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCC
Confidence 11110 11111 1245677788884 554433322 133444443 34444444444455678999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCC--CC----CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccccc
Q 015484 270 NEWVLATASSDTTVALFDMRK--MT----VPLHILSSHTEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~--~~----~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~ 342 (406)
++.++++=+..+.|.-|++.. .. .....+....+..-.++...+|. +-+++..+| .|.+|+...
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG-------- 244 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDG-------- 244 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCC--------
Confidence 985666666668888888762 11 11222333456667777888885 333333343 888888763
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADD 381 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~d 381 (406)
+++....-....+++++|-- +.+.+++++...
T Consensus 245 -------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 -------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred -------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 44444444446678888853 445466666544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=67.96 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=76.4
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee-EEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN-YLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
...+.-+.|+| ...++|.+..+|.|.+..+. .+.+.++.-+...++ +++|.|+|. +||+|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 45678889999 78999999999999999887 555667765666666 999999999 999999999999999998776
Q ss_pred CcEEecCCCCCeEEEEEcC
Q 015484 294 PLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p 312 (406)
.......-...|.++-|.|
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 3332333456788888874
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.013 Score=53.63 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
-..+-|+|++..++..--.+..|..+.+...... .. .--.+..+.+-.-|. -... -.+.++|+.
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-------~~----~yp~~~~~~YPk~G~-~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-------DS----QYPEVESIRYPKAGD-PNPR----VSLFVVDLA 166 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-------TE----SS-EEEEEE--BTTS----E----EEEEEEESS
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeeccCCc-------cc----cCCcccccccCCCCC-cCCc----eEEEEEECC
Confidence 3568899999655555555566666655431100 00 001244455433343 1111 246667887
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cC---CcEEEEECCCCccccccc-ccCCC---eeEEEec-C
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DD---CQLMIWDLRTNQTQQRVK-AHEKE---VNYLSFN-P 268 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~-~~~~~---v~~i~~~-~ 268 (406)
+++.. .+...........-+..+.|.+++..+++.-. .+ ..+.++|..++....... ..... -..+.+. +
T Consensus 167 ~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 167 SGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp STCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred CCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 76542 11111111234567889999984332443332 22 246677887765533221 11222 2345554 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC--cEEEEeCCCC-Ccccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ-VEWDPNHETVLASSADDR--RLMVWDLNRI-GDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~ 344 (406)
++..+|.....+|.-+||-+.........+....-.|.. +.|+++++.+..++..++ .-.||.+... +
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-------- 317 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-------- 317 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--------
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--------
Confidence 776677777788855554443323324566666667755 678898887777777633 3344443331 1
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
..+..+......-..+.|||++++++.+++.-
T Consensus 318 -----~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 318 -----GEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp -----TEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred -----CCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 11222222222226899999999877776643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0027 Score=45.97 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=67.2
Q ss_pred eeEEEe---cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 169 GYGLSW---SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 169 v~~l~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
|+++++ ..+|.+.|++|+.|..|++|+=... +..+. ....|.+++-.. ...|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------VAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------EEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC
Confidence 455554 4456678999999999999985531 22222 356788877664 577999999999999985
Q ss_pred CCCcccccccccCCCeeEEEec---CCCCcEEEEEeCCCcEE
Q 015484 246 RTNQTQQRVKAHEKEVNYLSFN---PYNEWVLATASSDTTVA 284 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~i~~~---~~~~~~l~~~~~dg~i~ 284 (406)
.. .+..++. +..++++++. -+|..-|++|-.+|.|-
T Consensus 71 ~~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQ--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cc--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 2333332 3335555543 33444688898888774
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0023 Score=46.31 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=68.6
Q ss_pred eeEEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 118 VNRARCMP---QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 118 v~~i~~~p---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
|++++++. ++.+-|++|+.|..|+||+-... +..+. -.+.|+++.-... . .++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------~~Ei~-e~~~v~~L~~~~~-~-~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------VAEIT-ETDKVTSLCSLGG-G-RFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------EEEEe-cccceEEEEEcCC-C-EEEEEecCCEEEEE
Confidence 66777665 55678999999999999998762 23333 4566777776654 3 79999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeC---CCCCEEEEEecCCcEE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHL---KNENLFGSAGDDCQLM 241 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~ 241 (406)
+-.. +.+ ..+ .+..+.++++.. ++..-|++|-.+|.|-
T Consensus 69 ~~~~----RlW----RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRSQ----RLW----RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCcc----eee----eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 8643 112 112 233466666553 2234677888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0046 Score=57.62 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred eEEEEeCCCccccccC--CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 139 EVYVFDCAKQAEKQQD--DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.|+.+++........+ ...+...+.........+.++|+|+ +++. +.||...++...... . ...+
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r--------~---k~~G 69 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWR--------N---KAFG 69 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTE--------E---EEEE
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCc--------c---cccC
Confidence 4566666554211111 1122334444455678999999988 6666 567888888733221 1 1234
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 296 (406)
.....+|.+ .+.+|+-...+.|.++.--..+....+.. ...+..|-. |. +|+..+.+ .|.+||+.+... +.
T Consensus 70 ~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~~~-i~ 140 (443)
T PF04053_consen 70 SGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GN-LLGVKSSD-FICFYDWETGKL-IR 140 (443)
T ss_dssp E-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT--E-EE
T ss_pred ceeEEEEec--CccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---Cc-EEEEECCC-CEEEEEhhHcce-ee
Confidence 556778986 55577777788999973323333334432 122333322 66 66666544 899999998654 66
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 297 ~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+... +|..+.|+++++ +++..+ +..+.|++...
T Consensus 141 ~i~v~--~vk~V~Ws~~g~-~val~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 141 RIDVS--AVKYVIWSDDGE-LVALVT-KDSIYILKYNL 174 (443)
T ss_dssp EESS---E-EEEEE-TTSS-EEEEE--S-SEEEEEE-H
T ss_pred EEecC--CCcEEEEECCCC-EEEEEe-CCeEEEEEecc
Confidence 66643 489999999997 465555 44788877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.043 Score=50.66 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=150.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.....+...|++..+.++-.....+.+.+... .. . ......-...-..++.++.+....++...++.|.+.|
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-----~--~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-----V--TQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeeccccc-ce-----e--eeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 36677788888755555544444454444442 11 0 0111111133457788888875666666678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe--cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
....... .... -......++++|.+..+.++-. .++.+.+.|..+++..........+ ..++++|++...
T Consensus 103 ~~~~~~~------~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~v 174 (381)
T COG3391 103 TATNTVL------GSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKV 174 (381)
T ss_pred Cccccee------eEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeE
Confidence 6654321 1111 1225677889996666666655 4789999999988887775443444 889999999955
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccccCC
Q 015484 274 LATASSDTTVALFDMRKMTVPLHI----LSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++-..++.|.+.|...... ... ...-......+.++|++.++.++...+ +.+...|....
T Consensus 175 yv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~------------ 241 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG------------ 241 (381)
T ss_pred EEEecCCCeEEEEeCCCcce-eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc------------
Confidence 66556788999999765432 110 111223457789999998655555444 58888887762
Q ss_pred CCeeEEE--ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 348 PPELLFS--HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 348 ~~~~~~~--~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..... ..+.. ....+..+|+|.+..+.-+..+.+.+-|..+..
T Consensus 242 --~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 242 --NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred --eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 11111 11111 456788999998544443445778888777643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.011 Score=50.73 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=102.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+.+++.++.++.||..++.. ...... ...+...... .+. .++.++.++.|..+|..+++....... .
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~--------~W~~~~-~~~~~~~~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~-~ 105 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKV--------LWRFDL-PGPISGAPVV-DGG-RVYVGTSDGSLYALDAKTGKVLWSIYL-T 105 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEE--------EEEEEC-SSCGGSGEEE-ETT-EEEEEETTSEEEEEETTTSCEEEEEEE--
T ss_pred EEEEEcCCCEEEEEECCCCCE--------EEEeec-cccccceeee-ccc-ccccccceeeeEecccCCcceeeeecc-c
Confidence 466668899999999977533 222322 1221111111 244 677777888999999888765332100 0
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC----------e-eEEEecCCCCcEEEEEe
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE----------V-NYLSFNPYNEWVLATAS 278 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~l~~~~ 278 (406)
...... ......... .+..++++..++.|..+|+++|+.+......... + ..+.+. ++ .+..++
T Consensus 106 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSS 180 (238)
T ss_dssp SSCTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEEC
T ss_pred cccccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEc
Confidence 000011 111122222 2566777787999999999999886665432211 1 223333 23 566666
Q ss_pred CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 279 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++.+.-+|+.+++. +-... ...+..+ ....+. .|+.++.++.|..||+.+
T Consensus 181 ~~g~~~~~d~~tg~~-~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 181 GDGRVVAVDLATGEK-LWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp CTSSEEEEETTTTEE-EEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTT
T ss_pred CCCeEEEEECCCCCE-EEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCC
Confidence 677544449998764 22222 2223332 335555 466666999999999987
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.018 Score=53.60 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=114.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCC-CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDC-DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.++.++.+|.+.-+|..++...-.... .+.....+...++ + .+. .++.++.+|.+..+|..+++.....+..
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~--v----~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~ 234 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA--T----AFG-GAIVGGDNGRVSAVLMEQGQLIWQQRIS 234 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE--E----ECC-EEEEEcCCCEEEEEEccCChhhheeccc
Confidence 455667788888888877533210000 0000011111111 1 123 5667778899999998887643322110
Q ss_pred eeeeccC-ccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 209 HVYEAHE-SVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 209 ~~~~~~~-~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.....+. .....+.-+| -.+..++.++.+|.+..+|+.+++.+..... .....+.. .+. .+..++.+|.+..+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~al 309 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYAL 309 (394)
T ss_pred cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEE
Confidence 0000000 0001111111 0134455677889999999999876544321 11112222 244 57777889999999
Q ss_pred eCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee-e
Q 015484 287 DMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS-D 364 (406)
Q Consensus 287 d~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~ 364 (406)
|..+++. +-.... ......+.... +. .|+.++.+|.+.+.|..+. +.+....-....+. .
T Consensus 310 d~~tG~~-~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG--------------~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 310 DTRGGVE-LWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDG--------------RFVAQQKVDSSGFLSE 371 (394)
T ss_pred ECCCCcE-EEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCC--------------CEEEEEEcCCCcceeC
Confidence 9987653 211111 01111111221 33 4778899999999998762 22322221111121 1
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 365 FSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.... ++ .|+.++.||.|..+++
T Consensus 372 P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CEEE-CC--EEEEEeCCceEEEEeC
Confidence 1221 33 4667788999888765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.023 Score=52.84 Aligned_cols=223 Identities=9% Similarity=0.013 Sum_probs=118.6
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.+..++.+|.++-+|..+++. .-...... .+.+ .... +. .++.+..+|.+..+|..+++........
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~--------~W~~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEV--------AWQTKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCC--------cccccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 466677889999999887543 22221111 1111 1111 33 6777888999999999988654332210
Q ss_pred e---eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC----C---CeeEEEecC--CCCcEEEE
Q 015484 209 H---VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----K---EVNYLSFNP--YNEWVLAT 276 (406)
Q Consensus 209 ~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~---~v~~i~~~~--~~~~~l~~ 276 (406)
. .......++ .. + ..++.++.+|.+..+|..+++.+....... . ....+.-+| .+. .++.
T Consensus 190 ~~~~~~~~~~sP~----v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~ 261 (394)
T PRK11138 190 VPSLTLRGESAPA----TA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYA 261 (394)
T ss_pred CCcccccCCCCCE----EE--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEE
Confidence 0 000011111 11 2 345567788999999999887654432110 0 011111122 234 5666
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++.+|.+..+|..+++. +-.... .....+.. .+. .++.++.+|.+..+|..+......... .
T Consensus 262 ~~~~g~l~ald~~tG~~-~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~------------~ 323 (394)
T PRK11138 262 LAYNGNLVALDLRSGQI-VWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSD------------L 323 (394)
T ss_pred EEcCCeEEEEECCCCCE-EEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccc------------c
Confidence 77889999999988764 222211 11112222 233 366777899999999876332111000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+ ....+.... +. .++.++.||.|.+.|..++..
T Consensus 324 ~~-~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 324 LH-RLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CC-CcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCE
Confidence 00 011111111 23 466778899999999888754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=59.92 Aligned_cols=142 Identities=12% Similarity=0.164 Sum_probs=97.7
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc------EEEEEeCCCcEEEEeCCCCCC-CcEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW------VLATASSDTTVALFDMRKMTV-PLHILSSH 301 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h 301 (406)
-+|.++.....|+-.|++.|+.+...+.+.. |+-+.+.|+... --+.|-.+..|.-||+|-... .+....+|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3455566677899999999999888875555 777788876431 123466788899999995443 23333333
Q ss_pred C----CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 302 T----EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 302 ~----~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
. ....|++-..+| .++.|+.+|.|++||--. . .....+.+-..+|..|..+.+|+|+|+|
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~-~-------------~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIG-R-------------RAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhh-h-------------hhhhcccccCCceeeEEeeccCcEEEEe
Confidence 2 345566666566 599999999999999732 1 2222345667789999999999987777
Q ss_pred EeCCCcEEEEeC
Q 015484 378 VADDNTVQVWQM 389 (406)
Q Consensus 378 ~~~dg~i~iw~~ 389 (406)
+ +..+.+-++
T Consensus 490 c--~tyLlLi~t 499 (644)
T KOG2395|consen 490 C--KTYLLLIDT 499 (644)
T ss_pred c--ccEEEEEEE
Confidence 5 566666654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0035 Score=57.40 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-------CCEEEEEecCCcEEEEECCCCcc--c
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-------ENLFGSAGDDCQLMIWDLRTNQT--Q 251 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-------~~~l~~~~~dg~i~i~d~~~~~~--~ 251 (406)
+|.++.....++-.|++.++... .+.-+.. |+-+.+.|+. ...| .|-.+..|.-||+|-... +
T Consensus 348 il~~~~~~~~l~klDIE~GKIVe------EWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVE------EWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeee------EeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCccee
Confidence 45556666678888888875433 3333333 5555555521 1223 466788899999985332 1
Q ss_pred ccccc----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 252 QRVKA----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 252 ~~~~~----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
..-.. ......|++-..+| ++++|+.+|.|++||- .+......+.+-..+|..|..+.+|+++|+|| +..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyL 494 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYL 494 (644)
T ss_pred eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEE
Confidence 11111 12344566555555 7999999999999997 44544566777888999999999999765554 6677
Q ss_pred EEEeCCC
Q 015484 328 MVWDLNR 334 (406)
Q Consensus 328 ~iwd~~~ 334 (406)
.+-++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 7777653
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00065 Score=63.20 Aligned_cols=75 Identities=19% Similarity=0.377 Sum_probs=64.3
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE-EEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF-QVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...+..+.|+|.-+ ++|.+..+|.|.+..+. .. .+.++..|...++ +++|.|+|+ +||.|-.||+|++-|+.+..
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 45677899999988 99999999999999887 33 3777776777777 999999996 89999999999999999854
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.095 Score=49.14 Aligned_cols=245 Identities=14% Similarity=0.168 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCcEEEEEeCCC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----
Q 015484 118 VNRARCMPQKPNLVGTKTSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----- 188 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----- 188 (406)
+...+++|++..++.+-+..| .++++|+.++.... -.+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-------d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-------DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-------EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-------Ccccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 335678999965544545555 59999998842210 11111 1122399999988555554332
Q ss_pred -----CeEEEEeCCCccCCceeeeeeeeeccCc-c-EEEEEeeCCCCCEEEEEecC---CcEEEEECCCC----cccccc
Q 015484 189 -----NKICLWDVSALAQDKVIDAMHVYEAHES-V-VEDVSWHLKNENLFGSAGDD---CQLMIWDLRTN----QTQQRV 254 (406)
Q Consensus 189 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-i~~i~~~p~~~~~l~~~~~d---g~i~i~d~~~~----~~~~~~ 254 (406)
..|..|.+.+..... ...+..... . ...+..++++..+++..... ..+.+.|+..+ .....+
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d----~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSED----ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cCCCCcEEEEEECCCChHhC----eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 237778877654321 122333222 2 56778887444444444333 34788888764 223333
Q ss_pred cccCCCe-eEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCC--CcEEecCCCCC--eEEEEEcCCCCCEEEEEeCCCc
Q 015484 255 KAHEKEV-NYLSFNPYNEWVLATASS---DTTVALFDMRKMTV--PLHILSSHTEE--VFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 255 ~~~~~~v-~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
......+ ..+... .+. +++.... .+.|.-.++..... ....+..+... +..+.. .+.++++....++.
T Consensus 273 ~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 273 SPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGS 348 (414)
T ss_dssp EESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTE
T ss_pred eCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCc
Confidence 3333333 334333 343 4443322 34677777776542 12245555553 444444 45557777766664
Q ss_pred --EEEEeCC-CCCcccccccccCCCCeeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCccc
Q 015484 327 --LMVWDLN-RIGDEQLELDAEDGPPELLFSH-GGHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSIY 394 (406)
Q Consensus 327 --i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~~ 394 (406)
|+++++. . ...... ..-.+.|..+...++++.+.++.+. -+.+.-||+.++..
T Consensus 349 ~~l~v~~~~~~---------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 349 SRLRVYDLDDG---------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEETT-T---------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred cEEEEEECCCC---------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 7778877 3 111111 1123345666666666545554442 24678888887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=40.37 Aligned_cols=36 Identities=42% Similarity=0.607 Sum_probs=31.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
...+..|...|.++.|.+.+. .+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 556778889999999999886 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.046 Score=45.78 Aligned_cols=141 Identities=10% Similarity=-0.039 Sum_probs=88.4
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
++.+.+++.|+..+.+.--|..+++....- .-...|.+-+.- -+++++.|+..|.+++.+..++.....+.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~-------ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEA-------ILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeeh-------hhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 334448889999999998898887532211 112334433333 26678899999999999999998776664
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
.-..-=......+++. ++..|+.|+..+..|.++... +...+-..+.-.+=+..|-... |..+...|.+.
T Consensus 91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c-VykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred ehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce-EEecccCCceeccceecCCCce-EEEEeccceEE
Confidence 3222222344567777 999999999999999998655 4444433333333344552222 33444444443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00045 Score=39.31 Aligned_cols=37 Identities=24% Similarity=0.610 Sum_probs=31.5
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
....+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 3455567888999999999887 789999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.028 Score=51.39 Aligned_cols=228 Identities=14% Similarity=0.216 Sum_probs=119.3
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee---eeec
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH---VYEA 213 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~ 213 (406)
.+.+.|||+.+.... .+......+....|+|+|. .++-. .++.|.+++..++.. ..+..-. .+.+
T Consensus 22 ~~~y~i~d~~~~~~~---------~l~~~~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~-~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT---------PLTPPPPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQE-TQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTTTEEE---------ESS-EETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEE-EESES--TTTEEES
T ss_pred ceeEEEEecCCCceE---------ECcCCccccccceeecCCC-eeEEE-ecCceEEEECCCCCe-EEeccccceeEEcC
Confidence 467999999984321 1222256788999999988 77766 467899998766522 1110000 0000
Q ss_pred c---------CccEEEEEeeCCCCCEEEEE-ecCCc-----------------------------------EEEEECCCC
Q 015484 214 H---------ESVVEDVSWHLKNENLFGSA-GDDCQ-----------------------------------LMIWDLRTN 248 (406)
Q Consensus 214 ~---------~~~i~~i~~~p~~~~~l~~~-~~dg~-----------------------------------i~i~d~~~~ 248 (406)
- -+.-..+-|+|+ ++.|+.. -++.. +.++|+.++
T Consensus 90 ~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~ 168 (353)
T PF00930_consen 90 VPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASG 168 (353)
T ss_dssp B--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSST
T ss_pred ccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCC
Confidence 0 112245678884 4444433 22222 344555555
Q ss_pred cccc-c----ccccCCCeeEEEecCCCC-cEEEEEeCCC---cEEEEeCCCCCCCcEEecCCCCCe---EEEEEc-CCCC
Q 015484 249 QTQQ-R----VKAHEKEVNYLSFNPYNE-WVLATASSDT---TVALFDMRKMTVPLHILSSHTEEV---FQVEWD-PNHE 315 (406)
Q Consensus 249 ~~~~-~----~~~~~~~v~~i~~~~~~~-~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~h~~~v---~~i~~~-p~~~ 315 (406)
+... . +......+..+.|.+++. .++.....+. .+.++|..++...+.........| ....|. +++.
T Consensus 169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~ 248 (353)
T PF00930_consen 169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN 248 (353)
T ss_dssp CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS
T ss_pred cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC
Confidence 4321 1 122345678899998887 3333344443 566778876554222222222322 345554 7776
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCCCCCcEEEEEeCCC--cEEEEeCC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNKNDPWVISSVADDN--TVQVWQMT 390 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~s~~~dg--~i~iw~~~ 390 (406)
.++.....||--.||-+...+. ....+....-.|.. +.|++++..++.++..++ .-++|.+.
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~-------------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGG-------------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSS-------------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEccccc-------------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 6777777888766666554222 12233333444644 677888776666766533 44555443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.057 Score=45.92 Aligned_cols=212 Identities=15% Similarity=0.163 Sum_probs=123.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCE-VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
......+.....|.|+|..+.-++.+-.-|+ ..++|.+...............+.+|. .|||+|. +|.+.-+
T Consensus 61 v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~-~LYATEn 133 (366)
T COG3490 61 VFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGR-LLYATEN 133 (366)
T ss_pred eeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCc-EEEeecC
Confidence 3344455666778999988777888877775 577888874332211111122334443 5899998 7766543
Q ss_pred C-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------------------CCcEEEEE
Q 015484 188 D-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------------------DCQLMIWD 244 (406)
Q Consensus 188 d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------------------dg~i~i~d 244 (406)
| |.|-|||.+.+ +..+..+..|.-....+.|.+ +++.++.+.. .-++.+.|
T Consensus 134 dfd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld 207 (366)
T COG3490 134 DFDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD 207 (366)
T ss_pred CCCCCCceEEEEecccc-----cceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence 3 78999998853 223455666777778888998 5566544421 12344555
Q ss_pred CCCCcccccc--c--ccCCCeeEEEecCCCCcEEEEEeCCCc----EEEEeCCCCCCCcEEecC-------CCCCeEEEE
Q 015484 245 LRTNQTQQRV--K--AHEKEVNYLSFNPYNEWVLATASSDTT----VALFDMRKMTVPLHILSS-------HTEEVFQVE 309 (406)
Q Consensus 245 ~~~~~~~~~~--~--~~~~~v~~i~~~~~~~~~l~~~~~dg~----i~vwd~~~~~~~~~~~~~-------h~~~v~~i~ 309 (406)
..+++.+.+. . .+.-.+..++..++|. +++.+-..|. --+.-......++..+.. -...|-+|+
T Consensus 208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA 286 (366)
T COG3490 208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA 286 (366)
T ss_pred ccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence 5566554433 1 3445677888888887 4443333221 001111111222332222 123477788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+.....+.+|+-..+...+||..+
T Consensus 287 ~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 287 ANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred ecccCCeEEEecCCCCeEEEEEcCC
Confidence 8877765556666677889999987
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0032 Score=59.92 Aligned_cols=95 Identities=15% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCcEEEEECCC-----CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-----------cEEecC
Q 015484 237 DCQLMIWDLRT-----NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-----------LHILSS 300 (406)
Q Consensus 237 dg~i~i~d~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~ 300 (406)
++.|.+.|.++ .+.+..+. -......+.++|+|+++++++..+.++.|+|+.+.+.. +.....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888877 23333333 34456789999999977777778999999999875531 222222
Q ss_pred CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 301 HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.......+|.++|. ...|..-|..|..|++..
T Consensus 374 -GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 23345678999986 688888999999999876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.034 Score=50.13 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=108.3
Q ss_pred EEEEEeecCCCC-C----CCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC
Q 015484 62 HKFVLGTHTSED-F----PNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS 136 (406)
Q Consensus 62 ~~~~~gt~~~~~-~----~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~ 136 (406)
..+++||.-..+ . ...|++..+.-. . .. ..+++.......+++|++++-. .+ . |+++.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~------~--~~-----~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~- 105 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISES------P--EN-----NFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV- 105 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS------------------EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE-
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcc------c--cc-----ceEEEEEEEEeecCcceEhhhh-CC-E-EEEee-
Confidence 577888853222 1 156777666521 0 11 1467777888889999999977 33 4 44433
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.+.|.+|++..... ..+...+. ....+.++... ++ +++.|+....+.++..+... ..+..+.. .....
T Consensus 106 g~~l~v~~l~~~~~-----l~~~~~~~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~--~~l~~va~-d~~~~ 173 (321)
T PF03178_consen 106 GNKLYVYDLDNSKT-----LLKKAFYD-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEEN--NKLILVAR-DYQPR 173 (321)
T ss_dssp TTEEEEEEEETTSS-----EEEEEEE--BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTT--E-EEEEEE-ESS-B
T ss_pred cCEEEEEEccCccc-----chhhheec-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccC--CEEEEEEe-cCCCc
Confidence 47799999988430 11122222 22255555554 55 89999988888888665421 22222221 22355
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-------c-ccccc--cccCCCeeEE---EecCC--CC-----cEEEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-------Q-TQQRV--KAHEKEVNYL---SFNPY--NE-----WVLAT 276 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~-~~~~~--~~~~~~v~~i---~~~~~--~~-----~~l~~ 276 (406)
.++++.|-+++ +.++++..+|.+.++..... . .+... -.....|+++ ++.|. +. ..++.
T Consensus 174 ~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~ 252 (321)
T PF03178_consen 174 WVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILY 252 (321)
T ss_dssp EEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEE
T ss_pred cEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEE
Confidence 68888888644 58889999999999987631 1 11111 1134567777 55552 22 14777
Q ss_pred EeCCCcEEEE
Q 015484 277 ASSDTTVALF 286 (406)
Q Consensus 277 ~~~dg~i~vw 286 (406)
++.+|.|.+.
T Consensus 253 ~T~~G~Ig~l 262 (321)
T PF03178_consen 253 GTVDGSIGVL 262 (321)
T ss_dssp EETTS-EEEE
T ss_pred EecCCEEEEE
Confidence 7888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.028 Score=54.63 Aligned_cols=235 Identities=12% Similarity=0.082 Sum_probs=121.1
Q ss_pred cEEEEEeCCC------eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC------CeEEEEeC
Q 015484 129 NLVGTKTSSC------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD------NKICLWDV 196 (406)
Q Consensus 129 ~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~ 196 (406)
.+++.|+..+ .+..||..... +.....+.. ...-.+++... +. ..++|+.| .++..||.
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~------w~~~a~m~~-~r~~~~~~~~~-~~-lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNE------WSSLAPMPS-PRCRVGVAVLN-GK-LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCc------EeecCCCCc-ccccccEEEEC-CE-EEEEccccCCCcccceEEEecC
Confidence 5677777763 57788887742 222333332 22233455543 44 78888888 35667777
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-----EEEEECCCCcccccccccCCCeeEEEecC-CC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-----LMIWDLRTNQTQQRVKAHEKEVNYLSFNP-YN 270 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-~~ 270 (406)
....- ..+.......... .++. -++.+.|+||.||. +-.||.++.+.-..-. ............ +|
T Consensus 357 ~~~~W----~~~a~M~~~R~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 357 RTNQW----TPVAPMNTKRSDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCce----eccCCccCccccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECC
Confidence 76542 1111111111111 1222 26889999998875 6678877665422111 111222222222 34
Q ss_pred CcEEEEEeCCC------cEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-----EEEEeCCCCCcc
Q 015484 271 EWVLATASSDT------TVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRR-----LMVWDLNRIGDE 338 (406)
Q Consensus 271 ~~~l~~~~~dg------~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~ 338 (406)
. +.++|+.++ ++..||..+..- .+..+..-..... ++.- ++ .+.+.||.|+. |..||..+..
T Consensus 429 ~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~-- 502 (571)
T KOG4441|consen 429 K-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ-- 502 (571)
T ss_pred E-EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc--
Confidence 4 788888654 567888876431 1111211111111 2222 23 47788887763 5667665511
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-----cEEEEeCCCcccCCCcc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-----TVQVWQMTDSIYRDDDD 399 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~ 399 (406)
...+.........+..+.+ ++. +.+.|+.|| +|..||+.++.+....+
T Consensus 503 ----------W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 503 ----------WTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ----------eeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 1222212222222222222 233 788888875 58899999988876554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.082 Score=48.85 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=128.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec--CCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS--HDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~i 193 (406)
..-..++.++.+....++...++.|.+.|...... ..... -...-..++++++++...++-. .++++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce--------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEE
Confidence 44567788888877777777788999999665221 11111 1125568999999973444434 3688888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-c----ccccCCCeeEEEecC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-R----VKAHEKEVNYLSFNP 268 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~i~~~~ 268 (406)
.|..+..... ....-..+ ..+++.|.+...+++-..++.|.+.|........ . .. ....-..+.++|
T Consensus 145 id~~t~~~~~------~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~ 216 (381)
T COG3391 145 IDAATNKVTA------TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDP 216 (381)
T ss_pred EeCCCCeEEE------EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECC
Confidence 8877654321 11111233 7889999666677666789999999977655442 1 21 222335688999
Q ss_pred CCCcEEEEEeCC--CcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 269 YNEWVLATASSD--TTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 269 ~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++....++...+ +.+...|...... ... ..........+..+|++..+.+.-+..+.+.+-|...
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v-~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNV-TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceE-EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 999555555444 5888888887553 222 1211114667899999986444445568888888776
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=46.94 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=69.5
Q ss_pred EEcCCCCcEEEEEeCCCe--EEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 122 RCMPQKPNLVGTKTSSCE--VYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
+|.++|..+|.++..+|. +++.|+.+.. +..|.... .......++++++ .++-......|+-.|+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~---------i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE---------ITQLTDGPGDNTFGGFLSPDDR-ALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E---------EEE---SS-B-TTT-EE-TTSS-EEEEEETTTEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE---------EEECccCCCCCccceEEecCCC-eEEEEECCCeEEEEECCc
Confidence 567788777777776764 5556666633 23333322 2233566778776 665554556888889988
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeC-CCCCEEEEEe---c-------------------CCcEEEEECCCCccccccc
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHL-KNENLFGSAG---D-------------------DCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~---~-------------------dg~i~i~d~~~~~~~~~~~ 255 (406)
.+.. ..+......+-...|.. .+...++..- . ...|.-.|+++++....+.
T Consensus 112 ~e~~------~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 112 LEER------VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp --EE------EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred CcEE------EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence 6432 22222333343344532 2344443221 1 1235556777766533333
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
....+..+.|+|..+.+|+-|.+
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-
T ss_pred -cCccccCcccCCCCCCEEEEecc
Confidence 45667889999988866666554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=53.82 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=79.0
Q ss_pred EEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEE
Q 015484 230 LFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV 308 (406)
Q Consensus 230 ~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i 308 (406)
.+...+.||.|+-++++..+....- ..+.....-+.+ +. -+++|+.+|.|.+|..............-...|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 3445677888888887754432111 111111111122 23 689999999999998873322111122222333333
Q ss_pred EEcCCCCC--EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEE--eCCCc
Q 015484 309 EWDPNHET--VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSV--ADDNT 383 (406)
Q Consensus 309 ~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~--~~dg~ 383 (406)
- |.++. +..+++.||.|+.|++.. .+.+-....|. .++..+..+..++ +++.+ +.|..
T Consensus 108 I--p~~~~~~~~c~~~~dg~ir~~n~~p--------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 108 I--PNGRDSSLGCVGAQDGRIRACNIKP--------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV 170 (238)
T ss_pred c--ccccccceeEEeccCCceeeecccc--------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence 2 33333 788999999999999875 33444444455 4455555555555 45555 66666
Q ss_pred EEEEeCCC
Q 015484 384 VQVWQMTD 391 (406)
Q Consensus 384 i~iw~~~~ 391 (406)
++.|++..
T Consensus 171 ~k~W~ve~ 178 (238)
T KOG2444|consen 171 LKKWNVEK 178 (238)
T ss_pred hhhcchhh
Confidence 77776653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=39.30 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~ 147 (406)
.........|.+++|+|.. ++||.++.+|.|.||.+.-
T Consensus 5 ~~~k~l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ecccCCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 3334455779999999998 6999999999999999943
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=45.23 Aligned_cols=201 Identities=10% Similarity=0.076 Sum_probs=112.2
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
+-.|.+....++.+--..+.|.-|+..++.. ..+. +...+.++..-. .+..|+++. . .+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d-~~g~Lv~~~-~-g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALID-AGGRLIACE-H-GVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeec-CCCeEEEEc-c-ccEEEeccCCce
Confidence 3457776664556666678899998876532 2222 233444444432 344443333 2 366677655544
Q ss_pred cccc-----cccCCCeeEEEecCCCCcEEEEEe-----C-----CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 251 QQRV-----KAHEKEVNYLSFNPYNEWVLATAS-----S-----DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 251 ~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~-----~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
+..+ .......+.+...|+|..++-+-+ . -|.|+.+|. . .........+-..-+.|+|+|+++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence 2222 112245667888999983332222 1 133444443 2 222444555556678999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-cEEEEeCCCc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-TVQVWQMTDS 392 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~ 392 (406)
.++++=+..+.|.-|++....-. ..+ ...........+..-.++...+|. +.+++..+| .|.+|++...
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~------~~~-~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGP------IGG-RRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCc------cCC-cceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCc
Confidence 76666677788988888631100 011 122222333455667788888888 454444443 8999998843
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.022 Score=56.82 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=68.2
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..++.|+..|.|...|.... ..+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l------ 165 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL------ 165 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcce------
Confidence 46889999999999988762 333233333458999999999999 9999999999999999886443
Q ss_pred eeeeccCccEEE---EEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 209 HVYEAHESVVED---VSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 209 ~~~~~~~~~i~~---i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
+.+..|..+.+. +.+.. ++..+.++...|. +|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 333333333333 33333 3456667777775 4544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.25 Score=46.05 Aligned_cols=189 Identities=8% Similarity=0.023 Sum_probs=93.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..+.+ +.|-++.|..+. . |++-..||.+++||+.... ... -........-....+....+...|- .+++ .++
T Consensus 76 i~w~~-~~iv~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~-~fs-l~~~i~~~~v~e~~i~~~~~~~~Gi-vvLt--~~~ 147 (410)
T PF04841_consen 76 IPWDS-GRIVGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF-QFS-LGEEIEEEKVLECRIFAIWFYKNGI-VVLT--GNN 147 (410)
T ss_pred EEECC-CCEEEEEECCCC-e-EEEEEcCCEEEEEeCCCce-eec-hhhhccccCcccccccccccCCCCE-EEEC--CCC
Confidence 34444 899999999865 3 5566799999999987532 000 0001111111122232333332332 2233 334
Q ss_pred eEEEEe-CCCccCCceee---e-eeeeeccCccEEE-EEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 190 KICLWD-VSALAQDKVID---A-MHVYEAHESVVED-VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 190 ~i~iwd-~~~~~~~~~~~---~-~~~~~~~~~~i~~-i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
.+.+.. .......+.+. . ......+. .... ..++. +....+....++.+.+.+-...+. +. ..+++..
T Consensus 148 ~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ 221 (410)
T PF04841_consen 148 RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIK 221 (410)
T ss_pred eEEEEeCccccchhhccccCCCccccccccc-ccccceEeec-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEE
Confidence 443332 22110000000 0 00000011 1111 22333 344444555556666554332211 22 3468999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNH 314 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~ 314 (406)
|+.||+++ ++|.-..+|.+.+....-.+. +..+... ......+.|+.++
T Consensus 222 iavSpng~-~iAl~t~~g~l~v~ssDf~~~-~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 222 IAVSPNGK-FIALFTDSGNLWVVSSDFSEK-LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred EEECCCCC-EEEEEECCCCEEEEECcccce-eEEeecCcCCCCcEEEEECCC
Confidence 99999999 888888999999887544332 4444332 3466778887665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0052 Score=61.04 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=69.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
.++.|+..|.+...|++..-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..... ...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~-----------l~~i 168 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI-----------LKVI 168 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc-----------eeee
Confidence 6888999999999999875444444445568999999999997 688999999999999987221 1222
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+......|..+.|..++. .+.++..-|. +|++
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 22222222344445555555 6777776675 5654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.084 Score=51.38 Aligned_cols=189 Identities=7% Similarity=0.093 Sum_probs=91.4
Q ss_pred eEEEecCC------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----cEEEEECCCCc
Q 015484 181 YLVSGSHD------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRTNQ 249 (406)
Q Consensus 181 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~ 249 (406)
..+.|+.+ ..+..||..+..- ..+.......... +++.. ++.+++.||.++ .+..||..+.+
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 67777753 3467788766421 1111111111111 22222 578888888764 37889988764
Q ss_pred cc--ccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------cEEEEeCCCCCC-CcEEecCCCC
Q 015484 250 TQ--QRVKAHEKEVNYLSFNPYNEWVLATASSDT-----------------------TVALFDMRKMTV-PLHILSSHTE 303 (406)
Q Consensus 250 ~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----------------------~i~vwd~~~~~~-~~~~~~~h~~ 303 (406)
-. ..+.........+.. ++. +.+.|+.++ .+..||..+..- .+..+.....
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred EEECCCCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 32 222211111222222 354 777777542 477788775421 1111111111
Q ss_pred CeEEEEEcCCCCCEEEEEeCCC------cEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 304 EVFQVEWDPNHETVLASSADDR------RLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
....+.+ ++ .+.+.|+.++ .+..||..+ .. ...+............+.. ++. +.+
T Consensus 456 ~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~------------W~~~~~m~~~r~~~~~~~~--~~~-iyv 517 (557)
T PHA02713 456 RPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNG------------WELITTTESRLSALHTILH--DNT-IMM 517 (557)
T ss_pred cCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCC------------eeEccccCcccccceeEEE--CCE-EEE
Confidence 1111222 23 3566666542 356677664 11 1111111111111222222 445 888
Q ss_pred EEeCCC--cEEEEeCCCcccCCC
Q 015484 377 SVADDN--TVQVWQMTDSIYRDD 397 (406)
Q Consensus 377 s~~~dg--~i~iw~~~~~~~~~~ 397 (406)
.||.|+ .+..||+.++.+...
T Consensus 518 ~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EeeecceeehhhcCcccccccch
Confidence 999888 788899988877643
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.13 Score=43.26 Aligned_cols=105 Identities=5% Similarity=0.015 Sum_probs=72.2
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCC
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
++...+++.|+..+.+...|..+++....-. -...+.+-+.- -|+ +++.|...|.+++.+..++.+ ...+..-..-
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~v 95 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ-IWNFVILETV 95 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh-eeeeeehhhh
Confidence 3456788889999999999999888653321 11222222221 255 789999999999999999765 4444332222
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+....+++. ++..|+.|+..+..|.++
T Consensus 96 k~~a~~d~~~g-lIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 96 KVRAQCDFDGG-LIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ccceEEcCCCc-eEEEecCCCcEEEecccc
Confidence 23345667775 799999999999999887
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.036 Score=55.71 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=91.1
Q ss_pred CCeeEEEecCCCCC-eEEEecCCCeEEEEeCCCccCCcee--eee---eeeeccCccEEEEEeeCCCCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVI--DAM---HVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 240 (406)
-++..+..++++.- .++..+++-.|..||+++-...... .++ ...........++.|+|.-....+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555555665441 2333344447889998764322111 111 11111223456788998666677788899999
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecC-CCCCeEEEEEcCCCCCEE
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-PLHILSS-HTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-h~~~v~~i~~~p~~~~~l 318 (406)
++..+........--.....+++++|+|.|. .++.|...|++.-|...-... .+..... ....|.+|+|-.....++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccc-eeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9887765433222223456789999999999 899999999999887543210 0111101 146899999988776433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.35 Score=42.94 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=120.4
Q ss_pred EEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe--cC
Q 015484 120 RARCMPQKPNLVGTKT----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG--SH 187 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--~~ 187 (406)
.+..+|+++. +.+++ ..-.|.+||..+.....+-...+..... .......++++.+++ +++.. +-
T Consensus 40 ~~~~spdgk~-~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk-~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKT-IYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVPYKNMFALSADGK-FLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSE-EEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS--GGGEEE-TTSS-EEEEEEESS
T ss_pred ceeECCCCCE-EEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecccccceEEccCCc-EEEEEccCC
Confidence 3567898854 44432 2346999999985332210011100000 001223456777776 54443 33
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccccc----cccCCCe-
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQRV----KAHEKEV- 261 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~v- 261 (406)
-.+|.|-|+...+.. ..+.. . -|...-|.++.-|.+-|.||.+.-..+. .|+...+. .....++
T Consensus 117 a~SVtVVDl~~~kvv------~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVV------GEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp SEEEEEEETTTTEEE------EEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred CCeEEEEECCCCcee------eeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 456777787765322 11111 1 1222234455668888999999988887 34443211 1112222
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecCC----------CCCeEEEEEcCCCCCEEEEEe--C-----
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSH----------TEEVFQVEWDPNHETVLASSA--D----- 323 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h----------~~~v~~i~~~p~~~~~l~s~~--~----- 323 (406)
..-++...+. .++--+..|.|+-.|+...... ......- .+.-.-+++++..+.+.+.-. .
T Consensus 187 ~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 187 EHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred cccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 2223333444 3444677899998888764311 1111100 012233555554433222211 1
Q ss_pred CC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE-EeCCCcEEEEeCCCcccCCC
Q 015484 324 DR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS-VADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 324 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~ 397 (406)
|+ .|-++|+.+ .+.+..+.. ..++.+|..+.+.+-+|++ ...++.|.+||..++.+...
T Consensus 266 dpgteVWv~D~~t--------------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 266 DPGTEVWVYDLKT--------------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp S-EEEEEEEETTT--------------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCceEEEEEECCC--------------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 11 255555554 233433331 2357789998876535544 45689999999999876443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.06 Score=52.38 Aligned_cols=184 Identities=7% Similarity=0.028 Sum_probs=89.6
Q ss_pred cEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCC
Q 015484 129 NLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~ 197 (406)
.+.+.|+.+ ..+..||..... +.....+....... +++.. ++. +.+.||.++ ++..||..
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~------W~~~~~m~~~R~~~-~~~~~-~g~-IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKI------HVELPPMIKNRCRF-SLAVI-DDT-IYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCe------EeeCCCCcchhhce-eEEEE-CCE-EEEECCcCCCCCCceEEEEECC
Confidence 567777753 347778876632 22222222111111 22222 244 677777654 47788887
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----------------------cEEEEECCCCccc--c
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----------------------QLMIWDLRTNQTQ--Q 252 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~ 252 (406)
+.. +..+............++. ++.+++.||.++ .+..||.++.+-. .
T Consensus 376 ~~~----W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 376 DDK----WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCe----EEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 642 1111111111111112222 577888887653 4777888776432 2
Q ss_pred cccccCCCeeEEEecCCCCcEEEEEeCCC------cEEEEeCCC-CC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 RVKAHEKEVNYLSFNPYNEWVLATASSDT------TVALFDMRK-MT-VPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 ~~~~~~~~v~~i~~~~~~~~~l~~~~~dg------~i~vwd~~~-~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.+.........+.+ ++. +.+.|+.++ .+..||..+ .. ..+..+.........+.+ ++ .+.++|+.+
T Consensus 449 ~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~ 522 (557)
T PHA02713 449 NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYE 522 (557)
T ss_pred CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeec
Confidence 22111111112222 344 677776542 467899886 22 122333332333333333 33 478899988
Q ss_pred C--cEEEEeCCC
Q 015484 325 R--RLMVWDLNR 334 (406)
Q Consensus 325 g--~i~iwd~~~ 334 (406)
| .+..||..+
T Consensus 523 ~~~~~e~yd~~~ 534 (557)
T PHA02713 523 SYMLQDTFNVYT 534 (557)
T ss_pred ceeehhhcCccc
Confidence 8 566666655
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.044 Score=51.35 Aligned_cols=152 Identities=11% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCeeEEEecCCCCCeEEEec--CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC----CCCEEEEEecCCcE
Q 015484 167 KEGYGLSWSPFKEGYLVSGS--HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK----NENLFGSAGDDCQL 240 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i 240 (406)
.++.+++|.. |+..++|.- .+|.+++=|-. .+ +.-..|..+.|.|- ...+| +......|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~---------vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK---------VI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHV 84 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCcc---------Ee----eccceeeeeeecCcccCCCCceE-EEeccceE
Confidence 5788999975 553555542 23333322211 11 22245888999884 23455 56667899
Q ss_pred EEEECCCC-----cccccccc-----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 241 MIWDLRTN-----QTQQRVKA-----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 241 ~i~d~~~~-----~~~~~~~~-----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
.+|.+... +.+..-.. ..---..+.|+|... +|++-.....-.+++++.....++.--...+.|.|.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 99998622 22111100 011123467999998 77776665555667777655555544456789999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++|+.++++.+..=.-+|||-..
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCch
Confidence 999998887777777788898543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.38 Score=46.99 Aligned_cols=191 Identities=13% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCCCeeEEEecCCCCCeEEEec------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGS------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--- 235 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--- 235 (406)
....+.+.+.+|+|. .++..- .|..-.+|-...+..... + ..+ .....-.|+|+ +..+.+..
T Consensus 348 ~~~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~---l--t~g--~~~t~PsWspD-G~~lw~v~dg~ 418 (591)
T PRK13616 348 QMGNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAVQ---V--LEG--HSLTRPSWSLD-ADAVWVVVDGN 418 (591)
T ss_pred cccCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCccee---e--ecC--CCCCCceECCC-CCceEEEecCc
Confidence 334678899999998 554443 244334443332221111 1 112 23677789984 34333332
Q ss_pred ---------cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEE---EeCCCCCCCc---EEe-c
Q 015484 236 ---------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVAL---FDMRKMTVPL---HIL-S 299 (406)
Q Consensus 236 ---------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~~---~~~-~ 299 (406)
..+.+.+.+++.+.... .....|..+.|+|+|.. ++... +|.|.+ -....+...+ ..+ .
T Consensus 419 ~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~R-iA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVR-AAMII-GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCE-EEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence 22344444555444332 23557999999999994 44433 467776 3322322111 112 2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.-...+.++.|.+++. ++ .+..++...+|.+.-.+.. ............+..++=++. . ++ .+.
T Consensus 494 ~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~-----------~~~~~~~n~~~~v~~vaa~~~-~-iy-v~~ 557 (591)
T PRK13616 494 GLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSN-----------SDALPSRNLSAPVVAVAASPS-T-VY-VTD 557 (591)
T ss_pred ccCCccccceEecCCE-EE-EEecCCCCceEEEecCCcc-----------ccccCCCCccCceEEEecCCc-e-EE-EEc
Confidence 2233468899999986 44 5555555556665542221 111111123456777777763 3 33 445
Q ss_pred CCCcEE
Q 015484 380 DDNTVQ 385 (406)
Q Consensus 380 ~dg~i~ 385 (406)
.+|.++
T Consensus 558 ~~g~~~ 563 (591)
T PRK13616 558 ARAVLQ 563 (591)
T ss_pred CCceEE
Confidence 566433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.056 Score=46.00 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=74.3
Q ss_pred cEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccccccccCC--CeeEEEecCCCCcEEEEEe----CCCcEEEEeCC
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQRVKAHEK--EVNYLSFNPYNEWVLATAS----SDTTVALFDMR 289 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~----~dg~i~vwd~~ 289 (406)
....++++|..+.-++.+-.-|+ ..++|....+....+...++ ..-.-.|+|+|..+.++-. .-|.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34457788876776766666665 45789888777665532221 1223469999994444432 13689999999
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
..-..+..+..|.-....+.|.++|+. |+.+ +|-|..-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIeth 186 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETH 186 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecc
Confidence 776667788888888899999999985 4443 3445444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.18 Score=47.55 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=78.1
Q ss_pred EEeecCCceeEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CC--CCC--eeEEEecCCCCC
Q 015484 110 QKIRVDGEVNRARCMPQ----KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GH--DKE--GYGLSWSPFKEG 180 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h--~~~--v~~l~~~~~~~~ 180 (406)
+.++.-..|..+.|.|- -+.+||+-. ...|.||.+....... .+....-. .. .-+ -.++-|+|...
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~---~K~l~sQtcEi~e~~pvLpQGCVWHPk~~- 125 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER---NKLLMSQTCEIREPFPVLPQGCVWHPKKA- 125 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc---ccceeeeeeeccCCcccCCCcccccCCCc-
Confidence 34555566999999994 456777754 5679999987432211 11111111 11 111 13677999887
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.|+.-.....-.++++...... + ...+ ...+.|.|.+|.+++.+++++.+..=.-++||-...
T Consensus 126 iL~VLT~~dvSV~~sV~~d~sr--V--kaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSR--V--KADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEecCceeEeeeeeeCCce--E--EEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6666555444455666543321 1 1222 346789999999977788777777777889996544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0045 Score=50.66 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=63.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-C
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-K 259 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~ 259 (406)
.++.|+.+|.|.+|..+...... ..+..-...|-++.-.-+.+.+..+++.||.|+.|++.-.+.+.....|. .
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~-----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS-----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred eEEeecccceEEEecCCccchHH-----HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 79999999999999887321110 01111123343333333345588899999999999998877766665555 4
Q ss_pred CeeEEEecCCCCcEEEEE--eCCCcEEEEeCCC
Q 015484 260 EVNYLSFNPYNEWVLATA--SSDTTVALFDMRK 290 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~--~~dg~i~vwd~~~ 290 (406)
++........++ +++.. +.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 444444444444 45555 5566666666654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.92 Score=45.56 Aligned_cols=208 Identities=12% Similarity=0.116 Sum_probs=130.5
Q ss_pred CCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCC--------------eEEEEeCCCccccccCCCCCceeeeCCC--
Q 015484 103 IPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSC--------------EVYVFDCAKQAEKQQDDCDPDLRLKGHD-- 166 (406)
Q Consensus 103 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~~~~h~-- 166 (406)
.+++.+.. ++-.....++++.+.. .++++.+... .++++|-++ ...+..|.
T Consensus 703 iqkl~irt-vpl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-----------f~vl~~hef~ 769 (1096)
T KOG1897|consen 703 IQKLHIRT-VPLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-----------FEVLSSHEFE 769 (1096)
T ss_pred hhhcceee-ecCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCc-----------eeEEeecccc
Confidence 35555554 6667788999999854 4455544321 244455444 23333333
Q ss_pred --C---CeeEEEecCCCCCeEEEecC----------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEE
Q 015484 167 --K---EGYGLSWSPFKEGYLVSGSH----------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 167 --~---~v~~l~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
. .|.++.|..+...+++.|.. .|.|.+|.+...+. ++.+.... -.+.+.++.-- +++++
T Consensus 770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~-v~Gav~aL~~f--ngkll 843 (1096)
T KOG1897|consen 770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETV-VKGAVYALVEF--NGKLL 843 (1096)
T ss_pred ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeee-eccceeehhhh--CCeEE
Confidence 2 34455577764447777642 57888888877322 22222211 24556665543 56777
Q ss_pred EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEecCCCCCeEEEE
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--PLHILSSHTEEVFQVE 309 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~i~ 309 (406)
|+- ...|++|+..+.+.++.-..+..++..+...-.++ .+++|..-+.+.+.-.+..+. ....-..+..+.+++.
T Consensus 844 A~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtave 920 (1096)
T KOG1897|consen 844 AGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVE 920 (1096)
T ss_pred Eec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEE
Confidence 544 45899999988877766666778888888888888 899999888887766655442 1222345677888888
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+-.+.. ++.+..+|.+.+-...+
T Consensus 921 il~~d~--ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 921 ILDDDT--YLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EecCce--EEeecccccEEEEEecC
Confidence 876653 55666788888877665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.39 Score=41.32 Aligned_cols=169 Identities=12% Similarity=0.179 Sum_probs=99.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+-...|.++.|+|+.+.++++....- -.|+=-..+ .......+.+- ...-+|.+...+. +.++--.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~G------dlirtiPL~g~-~DpE~Ieyig~n~-fvi~dER~~~l 152 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEG------DLIRTIPLTGF-SDPETIEYIGGNQ-FVIVDERDRAL 152 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCc-eEEEEecCC------ceEEEeccccc-CChhHeEEecCCE-EEEEehhcceE
Confidence 344566999999999966555554443 333322221 12112233332 2234678887665 66666678888
Q ss_pred EEEeCCCccCCceee----eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccccc-------c
Q 015484 192 CLWDVSALAQDKVID----AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRVKA-------H 257 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~----~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~-------~ 257 (406)
.++.+.......... ++......+.....++|.|.+.. |..+-+-.-+.||.+...... ..... .
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceE
Confidence 888877653221111 11222222567889999995544 446666667888776643311 11111 1
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
-..|.++.|++....+|+-+.+++.+.-.|...
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 245778889987776888888888888888764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.69 Score=43.38 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=104.3
Q ss_pred eeEEEecCCCCCeEEEe-cCCC----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------
Q 015484 169 GYGLSWSPFKEGYLVSG-SHDN----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------ 237 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------ 237 (406)
+..+.++|+++ +++.+ +..| .|+++|+.+++.. . ..+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l---~--d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFL---P--DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEE---E--EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCc---C--Ccccc--cccceEEEeCCCCEEEEEEeCccccccc
Confidence 34678899998 55543 4444 5999999987321 1 11111 1122389998555555555333
Q ss_pred ----CcEEEEECCCCccc--ccccccCCC--eeEEEecCCCCcEEEEEeCCC---cEEEEeCCCC---CCCcEEecCCCC
Q 015484 238 ----CQLMIWDLRTNQTQ--QRVKAHEKE--VNYLSFNPYNEWVLATASSDT---TVALFDMRKM---TVPLHILSSHTE 303 (406)
Q Consensus 238 ----g~i~i~d~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~---~~~~~~~~~h~~ 303 (406)
..|+.|.+.+.... ..+...... ...+..+++++++++...... .+.+.|+... ......+.....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 23788888766443 233332222 567889999996555555433 4788888874 223444444344
Q ss_pred Ce-EEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--CeeeEEeCCCCCcEEEE
Q 015484 304 EV-FQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KISDFSWNKNDPWVISS 377 (406)
Q Consensus 304 ~v-~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l~s 377 (406)
.+ ..+... .+ .+++... ..+.|.-.++...... .....+..+.. .+..+... +.++++.
T Consensus 278 ~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~-----------~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~ 342 (414)
T PF02897_consen 278 GVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPA-----------EWWTVLIPEDEDVSLEDVSLF--KDYLVLS 342 (414)
T ss_dssp S-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGG-----------GEEEEEE--SSSEEEEEEEEE--TTEEEEE
T ss_pred ceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccc-----------cceeEEcCCCCceeEEEEEEE--CCEEEEE
Confidence 44 334433 33 3444332 2456666676653210 01112223333 35555543 4457777
Q ss_pred EeCCCc--EEEEeCC
Q 015484 378 VADDNT--VQVWQMT 390 (406)
Q Consensus 378 ~~~dg~--i~iw~~~ 390 (406)
...++. |+++++.
T Consensus 343 ~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 343 YRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEEEETT
T ss_pred EEECCccEEEEEECC
Confidence 776664 7888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.73 Score=42.27 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=88.0
Q ss_pred CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC---CC----CCeeEEEecCCCCCeEEEec--C----CCeEEE
Q 015484 127 KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG---HD----KEGYGLSWSPFKEGYLVSGS--H----DNKICL 193 (406)
Q Consensus 127 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~--~----dg~i~i 193 (406)
.+.+++-|-.++.|+|+|+.+....+. ..+.+.. +. ..-..+---|+|+ .++++- . -|-+.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~----l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPR----LHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-E----EEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCc----eEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEE
Confidence 434555666888999999986433221 1111111 00 0111222335565 666642 1 245666
Q ss_pred EeCCCccCCceeeeeeeeec---cCccEEEEEeeCCCCCEEEEEe--------------------cCCcEEEEECCCCcc
Q 015484 194 WDVSALAQDKVIDAMHVYEA---HESVVEDVSWHLKNENLFGSAG--------------------DDCQLMIWDLRTNQT 250 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~--------------------~dg~i~i~d~~~~~~ 250 (406)
.|-++... ...... ...--.++-|.| ..+.+++.. ...++.+||+.+.+.
T Consensus 162 lD~~tf~v------~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 162 LDGETFEV------KGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp E-TTT--E------EEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred EcCccccc------cceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 66554321 111111 122345666777 455555543 245799999999999
Q ss_pred cccccccCC--CeeEEEe--cCCCCcEEEEEeCCCcEEEEeC-CCCC---CCcEEec-----------------CCCCCe
Q 015484 251 QQRVKAHEK--EVNYLSF--NPYNEWVLATASSDTTVALFDM-RKMT---VPLHILS-----------------SHTEEV 305 (406)
Q Consensus 251 ~~~~~~~~~--~v~~i~~--~~~~~~~l~~~~~dg~i~vwd~-~~~~---~~~~~~~-----------------~h~~~v 305 (406)
++++..... ....|.| .|....-++.+.-.++|..|-- ..+. +.+..+. .-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 988854332 2334544 5666644555545555555533 2211 0011111 113458
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+.|..|.+.++|.+++=.+|.|+.||+.....
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999999998777888899999999987543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.78 Score=42.44 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=58.8
Q ss_pred EEEecCCCCCeEEEecCCCeEEE---EeCCCcc-CCcee--eeeeeeecc-CccEEEEEeeCC----------CCCEEEE
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICL---WDVSALA-QDKVI--DAMHVYEAH-ESVVEDVSWHLK----------NENLFGS 233 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~i---wd~~~~~-~~~~~--~~~~~~~~~-~~~i~~i~~~p~----------~~~~l~~ 233 (406)
.++.+|+++ .|+.|..+..+.+ |+..... ..... .....+... ...|+++.|-|- +...+++
T Consensus 6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 467788888 8888876665554 5442221 11111 111112111 146777776553 3577899
Q ss_pred EecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|..+|.|++|.. +|..+..-.-|..+|..+...
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 999999999986 566665555678888888764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
...|..++|+|... ++|.+..+|.|.+++++-+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 45699999999999 8999999999999999543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.62 Score=40.85 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=85.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
+.|+.|+.+| +++++.... ..+.... +...|..+...+.-+ .|++-+ |+.+.++++............
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~-------~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDP-------SKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CEEEEEECCC-EEEEEecCC-------ccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccc
Confidence 5788899999 999999331 1112222 233399999998766 555554 599999998875432211000
Q ss_pred e--------eeeccCccEEEEE-eeCCCCCEEEEEecCCcEEEEECCCC-----cccccccccCCCeeEEEecCCCCcEE
Q 015484 209 H--------VYEAHESVVEDVS-WHLKNENLFGSAGDDCQLMIWDLRTN-----QTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 209 ~--------~~~~~~~~i~~i~-~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
. ........+...+ -....+...+++.....|.+|..... +..+.+. -...+.+++|. ++ .+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~-~i 151 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN-KI 151 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC-EE
Confidence 0 0011122344433 11223333344555568888887653 2334443 34778899998 33 67
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 015484 275 ATASSDTTVALFDMRKMT 292 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~ 292 (406)
+.|..+ ...+.|+.+..
T Consensus 152 ~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 152 CVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EEEeCC-ceEEEecCCCC
Confidence 777655 58889998644
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.25 Score=45.19 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=92.1
Q ss_pred eEEEec-CCCeEEEEeCCCccCCceeeeeeeeec---c----CccEEEEEeeCCCCCEEEEEe------cCCcEEEEECC
Q 015484 181 YLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEA---H----ESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLR 246 (406)
Q Consensus 181 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~----~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~ 246 (406)
+|+..+ ..+.|.|.|+.+......+. +.+.. + -+....+..-| ++.+++++- .-|.+.++|-+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~--KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLH--KVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEE--EEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceE--eeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCc
Confidence 565555 77899999998644333221 11111 1 01222333345 566776652 23457788877
Q ss_pred CCcccccccc---cCCCeeEEEecCCCCcEEEEEe--------------------CCCcEEEEeCCCCCCCcEEecCCCC
Q 015484 247 TNQTQQRVKA---HEKEVNYLSFNPYNEWVLATAS--------------------SDTTVALFDMRKMTVPLHILSSHTE 303 (406)
Q Consensus 247 ~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~h~~ 303 (406)
+.+....... ....-..+-|.|..+ .+++.. ...++.+||+...+. ++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~-~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL-LQTIDLGEE 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE-EEEEES-TT
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE-eeEEecCCC
Confidence 6665544432 223345677888666 666643 235899999998554 666655432
Q ss_pred --CeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCe---------eEEEecCCCCCeeeEEeCCC
Q 015484 304 --EVFQVEW--DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE---------LLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 304 --~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~s~~ 370 (406)
.+..|.| .|+..+=++.+...++|..|--...+. ......-+.+.. ++..+..-..-|+++..|.+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 3556666 455554455555566665554322221 110000000000 00000001235899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCcc
Q 015484 371 DPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+++.+++=.+|.|+.||+++..
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCEEEEEcccCCcEEEEecCCCC
Confidence 99988888899999999998753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.084 Score=53.27 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=89.6
Q ss_pred cEEEEEeeCCCCCEEEE--EecCCcEEEEECCCCcccc-----cc------cccCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 217 VVEDVSWHLKNENLFGS--AGDDCQLMIWDLRTNQTQQ-----RV------KAHEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
++..+...+ +....++ .+++-.|..||++.-..-. .+ ........++.|+|.-....++...|+.|
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455555555 3444333 3344478899998643211 11 11223456788999877667888889999
Q ss_pred EEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee
Q 015484 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 363 (406)
++.-+......+..+. -...+++++|+|.|.+ ++.|-..|++.-|...-..... ..+++. .....|.
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik~~-----ip~Pp~------~e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIKSE-----IPEPPV------EENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeecccceeec-----ccCCCc------CCCccee
Confidence 9987765444333332 3567899999999986 8899999999888765311100 001110 0145689
Q ss_pred eEEeCCCCCcEEE
Q 015484 364 DFSWNKNDPWVIS 376 (406)
Q Consensus 364 ~~~~s~~~~~~l~ 376 (406)
+|+|-....++++
T Consensus 248 ~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVV 260 (1405)
T ss_pred EEEEecceeEEEE
Confidence 9999877764433
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.4 Score=41.29 Aligned_cols=174 Identities=10% Similarity=0.159 Sum_probs=103.1
Q ss_pred ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 213 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
+-...+.++.|+|+...+| +..+...-.++=...|+.+.++... -...-.|.+...+. +.++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 3445699999999655555 5555555556655668877776321 23344577776666 5666666778887766543
Q ss_pred CC---------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCe
Q 015484 292 TV---------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI 362 (406)
Q Consensus 292 ~~---------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 362 (406)
.. ++..........-.++|.|.... |..+-+-.-+.||.+............ ..+ ..... -....|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~-~~~-~~~~~--~f~~Dv 235 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHAS-LDP-TADRD--LFVLDV 235 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccc-cCc-ccccc--eEeecc
Confidence 21 11112222456788999999875 667777778888887642211111000 000 00000 012347
Q ss_pred eeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 363 SDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 363 ~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.++.|++....+++-+.+++.+.--+...+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 7888887665577777778877777766653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.71 Score=39.94 Aligned_cols=167 Identities=12% Similarity=0.065 Sum_probs=90.2
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEe-CCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD-MRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~~ 295 (406)
.+.+.++++++..+.+....++.-.+|-...+....... ....+..-+|++++. +.+....+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCccee
Confidence 678889998544444444233333444444443333332 234778889999976 666656566666663 23322212
Q ss_pred EEecCC-C-CCeEEEEEcCCCCCEEEEE--eCCCcEEEEeCCCCCcc-cccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 296 HILSSH-T-EEVFQVEWDPNHETVLASS--ADDRRLMVWDLNRIGDE-QLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 296 ~~~~~h-~-~~v~~i~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
...... . ..|..+.++|+|..+.+.. ..++.|.+=-+.....- .... .............+.++.|.++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l------~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL------TGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee------ccceEecccccCcceeeeecCC
Confidence 222221 1 2899999999998755444 23577777665542221 0000 0111222233457999999999
Q ss_pred CCcEEEEEeCCCcEEE-EeCCC
Q 015484 371 DPWVISSVADDNTVQV-WQMTD 391 (406)
Q Consensus 371 ~~~~l~s~~~dg~i~i-w~~~~ 391 (406)
+..++++...++.+.. ..+..
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccC
Confidence 9844444444554444 44433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.85 Score=44.61 Aligned_cols=185 Identities=13% Similarity=0.057 Sum_probs=94.4
Q ss_pred CceeEEEEcCCCCcEEEEEe-----CCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 116 GEVNRARCMPQKPNLVGTKT-----SSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-----~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+...+.+|++..+.++.. .|. .+.+++.... ..+ ...+ ...+.-.|+|+|. .|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-------~~~--lt~g--~~~t~PsWspDG~-~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-------AVQ--VLEG--HSLTRPSWSLDAD-AVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-------cee--eecC--CCCCCceECCCCC-ceEEEecC
Confidence 35778889999965544442 233 4555554321 111 1222 2377889999977 66666432
Q ss_pred ------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE---EECCCCcc-c-
Q 015484 189 ------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI---WDLRTNQT-Q- 251 (406)
Q Consensus 189 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i---~d~~~~~~-~- 251 (406)
+.+.+.+++.+.. .. .....|..+.|+|++ ..++... +|.|.+ -....+.. +
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~-------~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAV-------AS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchh-------hh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence 2222223322111 00 234579999999954 4444433 477776 34333431 1
Q ss_pred --ccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 252 --QRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 252 --~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
..+ ......+.++.|..++. + +++..++.-.+|.+.-.......+.. ...++..|+=++. . ++....+|.
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~-L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~g~ 561 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDS-L-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDARAV 561 (591)
T ss_pred ccEEeecccCCccccceEecCCE-E-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCCce
Confidence 112 12233468899999887 4 45555554444543322211111122 2456777776653 2 444555664
Q ss_pred EE
Q 015484 327 LM 328 (406)
Q Consensus 327 i~ 328 (406)
+.
T Consensus 562 ~~ 563 (591)
T PRK13616 562 LQ 563 (591)
T ss_pred EE
Confidence 33
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.42 Score=39.68 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=66.6
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEe--CCCccCCce--eeeeeeeeccCcc-EEEEEeeCCCCCEEEEEecCCcEEEE
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWD--VSALAQDKV--IDAMHVYEAHESV-VEDVSWHLKNENLFGSAGDDCQLMIW 243 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~-i~~i~~~p~~~~~l~~~~~dg~i~i~ 243 (406)
-++++|+.+.+.+.++-+.+-+|.-|| ..++..... +-.+...+..... .-.++... .+++++++-+.|+|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence 357899977765666777788888888 555433211 1011111111111 12233343 68888899999999999
Q ss_pred ECCCCcccccccccCCCeeEEEecCC
Q 015484 244 DLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 244 d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|..+++.+..++-....++|++|--.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCC
Confidence 99999999999888999999999643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.5 Score=42.06 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=79.7
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccE-EEEEeeCCCCCEEEEEe---------cCCcEEEEECCCCcc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV-EDVSWHLKNENLFGSAG---------DDCQLMIWDLRTNQT 250 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~ 250 (406)
.++.++.+|.|.-+|.++++............ ....+ ....+. + .+++.++ .+|.+..+|..+++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 78888899999999999886543221110000 00001 111222 2 3343443 368899999999987
Q ss_pred cccccccCC--------------------Ce-eEEEecCCCCcEEEEEeCCC------------------cEEEEeCCCC
Q 015484 251 QQRVKAHEK--------------------EV-NYLSFNPYNEWVLATASSDT------------------TVALFDMRKM 291 (406)
Q Consensus 251 ~~~~~~~~~--------------------~v-~~i~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~ 291 (406)
+-.+..... .+ .+.++.+.+. +++.++.++ .|.-+|..++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 665532111 00 1234444455 677776554 6888888887
Q ss_pred CCCcEEec--CCC--------CC-eEEEE-EcCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 292 TVPLHILS--SHT--------EE-VFQVE-WDPNHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 292 ~~~~~~~~--~h~--------~~-v~~i~-~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
+. +-.+. .|. .+ +..+. ..-....+++.++.+|.+...|..+...
T Consensus 267 ~~-~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 267 KV-KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CE-EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 65 22221 111 11 11111 1111112567777888888888877543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.96 E-value=1 Score=39.47 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE---------
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--------- 297 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------- 297 (406)
.++.++.|+++| +.++++........+. ....|..+...|.-+ .|++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467777888888 9999983332222222 233499999998777 444443 599999999875542211
Q ss_pred ----ecCCCCCeEEEE--EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 298 ----LSSHTEEVFQVE--WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 298 ----~~~h~~~v~~i~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
.......+..++ -.+.+...|+ .....+|.+|.......... .....+. -...+.+++|.++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~---------~~~ke~~-lp~~~~~i~~~~~- 149 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS---------KLLKEIS-LPDPPSSIAFLGN- 149 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc---------ceeEEEE-cCCCcEEEEEeCC-
Confidence 111223344444 1223333344 44455899998876211100 1222222 2357889999844
Q ss_pred CcEEEEEeCCCcEEEEeCCCccc
Q 015484 372 PWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.++.|.. +...+.|+.++..
T Consensus 150 --~i~v~~~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 150 --KICVGTS-KGFYLIDLNTGSP 169 (275)
T ss_pred --EEEEEeC-CceEEEecCCCCc
Confidence 4555554 4478888886644
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.32 Score=47.44 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=95.2
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...-.+++... + .+.++|+.+ .++..||.... .+.....+....... +++.. .|. +.+.|+.|
T Consensus 322 ~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~------~W~~~a~M~~~R~~~-~v~~l-~g~-iYavGG~d 390 (571)
T KOG4441|consen 322 PRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTN------QWTPVAPMNTKRSDF-GVAVL-DGK-LYAVGGFD 390 (571)
T ss_pred ccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCC------ceeccCCccCccccc-eeEEE-CCE-EEEEeccc
Confidence 33344445444 3 578888888 35777887763 343333333222222 22221 244 78888888
Q ss_pred Ce-----EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC------cEEEEECCCCccc--cccc
Q 015484 189 NK-----ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC------QLMIWDLRTNQTQ--QRVK 255 (406)
Q Consensus 189 g~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg------~i~i~d~~~~~~~--~~~~ 255 (406)
|. +-.||..+.+-. ..............+.+ ++.+.++||.++ ++..||..+++.. ..+.
T Consensus 391 g~~~l~svE~YDp~~~~W~----~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWT----PVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred cccccccEEEecCCCCccc----ccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 64 667777664321 11111111111222222 588888888554 4678888876542 2222
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
..........+ ++. +.+.|+.|+ +|..||.++..-. +..+......+..+. .+..+.+.|+.||.
T Consensus 464 ~~R~~~g~a~~--~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 464 TRRSGFGVAVL--NGK-IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGN 534 (571)
T ss_pred cccccceEEEE--CCE-EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE---ECCEEEEEecccCc
Confidence 22222222222 244 888888776 3777888764421 111222222222222 23346778887754
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.34 Score=47.03 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=68.2
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEc--CCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWD--PNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..-+.-+..+. ..++-+....+.|||.+.............+.|.++.|. |+++. +++.|-...|.+|--......
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhh
Confidence 33444444454 333333344899999987653222222457789999984 67765 666667888888864321111
Q ss_pred cccccccCCCCeeEEEecCCC-CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 339 QLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..... -. +........|+ .+|.+..|.++|. +++.+ ++.+.|++-.
T Consensus 110 ~~~p~--w~-~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPS--WA-PIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcc--cc-eeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 10000 00 11111123333 5799999999997 44433 4578888643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.6 Score=45.45 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred CCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCC------CcEEEEeCCCCCC
Q 015484 227 NENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSD------TTVALFDMRKMTV 293 (406)
Q Consensus 227 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~ 293 (406)
++.+++.||.+ ..+..||..+.+-.. .+....... +++. -++. +++.|+.+ ..+..||+.+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCee
Confidence 57788888865 346778887654321 111111111 1222 2344 67777632 3578899875431
Q ss_pred -CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--------cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee
Q 015484 294 -PLHILSSHTEEVFQVEWDPNHETVLASSADDR--------RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364 (406)
Q Consensus 294 -~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 364 (406)
.+..+....... ++.. .++ .+++.|+.++ .+.+||..+..-.... .......+| ..
T Consensus 419 ~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~~~~r~~~----~~ 483 (534)
T PHA03098 419 SKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--------SLNFPRINA----SL 483 (534)
T ss_pred eecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCC--------CCCcccccc----eE
Confidence 011111111111 1222 233 3666666432 3777887652211100 000000111 11
Q ss_pred EEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCCCcc
Q 015484 365 FSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRDDDD 399 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~ 399 (406)
+.+ ++. +++.||.+ +.|.+||+.++.+.....
T Consensus 484 ~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 484 CIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred EEE--CCE-EEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 222 455 67777654 478999999987765443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.62 E-value=2 Score=41.26 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=60.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccE--EEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV--EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i--~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
.++.++.++.|.-.|..+++.................+ ..+... ++..++.++.+|.|+.+|.++++.+-.+....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 67777788999999998876543322111000000001 011111 22566678889999999999999876654322
Q ss_pred CC-----e-eEEEecCCCCcEEEEEe---------CCCcEEEEeCCCCCC
Q 015484 259 KE-----V-NYLSFNPYNEWVLATAS---------SDTTVALFDMRKMTV 293 (406)
Q Consensus 259 ~~-----v-~~i~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~ 293 (406)
.. + .+..+. +. +++.++ .+|.+..+|..+++.
T Consensus 141 ~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 10 1 111222 23 455554 357788889888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.39 Score=42.63 Aligned_cols=157 Identities=10% Similarity=0.109 Sum_probs=87.2
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEE-EEEeeCCCCCEEEEEecCCcEEEEECCCCccc--
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-- 251 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-- 251 (406)
-|.++..+.+-+.||++.-..+....... .+....|.....++. .-++.. .+..++-.+.+|.|+-.|+......
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccccc
Confidence 34454468888899999999998544322 111122222222222 223333 3344444788898888887655421
Q ss_pred ccccc----------cCCCeeEEEecCCCCcEEEEEe-------CCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 252 QRVKA----------HEKEVNYLSFNPYNEWVLATAS-------SDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 252 ~~~~~----------~~~~v~~i~~~~~~~~~l~~~~-------~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
..+.. ..+.-.-+++++....+++.-. .|+ .|-++|+.+.+. +..+.. ..++.+|..+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsq 298 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQ 298 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEES
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEcc
Confidence 11100 0122334677765542333221 122 577888888665 555553 34577999999
Q ss_pred CCCCEEEEE-eCCCcEEEEeCCCC
Q 015484 313 NHETVLASS-ADDRRLMVWDLNRI 335 (406)
Q Consensus 313 ~~~~~l~s~-~~dg~i~iwd~~~~ 335 (406)
+.+-+|++. ..++.+.+||..++
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT-
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCC
Confidence 887667655 45899999999983
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.3 Score=43.18 Aligned_cols=184 Identities=11% Similarity=0.020 Sum_probs=82.7
Q ss_pred cEEEEEeCCC------eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCC
Q 015484 129 NLVGTKTSSC------EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~ 197 (406)
.+++.|+.++ .+..||..+..- .....+.........+.+ ++. .++.|+.+ ..+..||..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W------~~~~~~~~~R~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSW------NKVPELIYPRKNPGVTVF--NNR-IYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCee------eECCCCCcccccceEEEE--CCE-EEEEeCCCCCEecceEEEEcCC
Confidence 5666666542 467788766322 111111111111222222 244 77777765 346678876
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCcccc--cccccCCCeeEEEecCC
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~ 269 (406)
+..- ............ .+++.. ++.+++.||.+ ..+..||+.+.+-.. .+....... ++... +
T Consensus 367 ~~~W----~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~ 437 (534)
T PHA03098 367 ESKW----REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-D 437 (534)
T ss_pred CCce----eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-C
Confidence 6432 111111111111 112222 56777777732 357889988754322 111111111 22222 3
Q ss_pred CCcEEEEEeCCC--------cEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 270 NEWVLATASSDT--------TVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~dg--------~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
+. +++.|+.++ .+.+||..+..- .+..+.........+.+ ++ .+++.|+.+ +.+.+||..+
T Consensus 438 ~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 438 GK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence 44 667676432 388889876431 01111111111122222 34 366666654 3567777654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.063 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=27.5
Q ss_pred ccEEEEEeeCCCC--CEEEEEecCCcEEEEECCC
Q 015484 216 SVVEDVSWHLKNE--NLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 216 ~~i~~i~~~p~~~--~~l~~~~~dg~i~i~d~~~ 247 (406)
++|.++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 7999888999999999995
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.1 Score=43.56 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=67.6
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccCCCeeEEEec--CCCCcEEEEEeCCCcEEEEeCC----
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHEKEVNYLSFN--PYNEWVLATASSDTTVALFDMR---- 289 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~vwd~~---- 289 (406)
.+.-+.-+. -++..++-+....+.|||.+.+....... ...+.|..+.|. |+++.+|++ +-.+.|.+|--.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-EcCcEEEEEEccchhh
Confidence 334444443 23444444455679999999877533322 347789999984 678845554 556778887432
Q ss_pred -CCC---CCcEE--ecCCC-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 290 -KMT---VPLHI--LSSHT-EEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 290 -~~~---~~~~~--~~~h~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+.. .++.. +..|+ .+|.+..|.++|. |+.|+ ++.+.|+|-.-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCCc
Confidence 111 12222 23344 5799999999994 44444 55788887543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.79 Score=42.60 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=93.7
Q ss_pred EEEeeCCCCCEE-EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc------EEEEEeCCCcEEEEeCCCCC
Q 015484 220 DVSWHLKNENLF-GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW------VLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 220 ~i~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+-.+-++..++ ..|+....++-.|+..|+.+.....+..- -+.|.|.... .-++|-++..|.-.|.|-..
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 333443344444 45666778888999999988888766554 4778875321 13345566677777887654
Q ss_pred CCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 293 VPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 293 ~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
..+..... ......+..-...| ++|.++..|-|++||--.. .....+.+....|..+..+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~--------------rAKtalP~lG~aIk~idvt 612 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGK--------------RAKTALPGLGDAIKHIDVT 612 (776)
T ss_pred CceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcc--------------hhhhcCcccccceeeeEee
Confidence 33332221 11223333333344 5999999999999996431 1112233455678899999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 015484 369 KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+|.++||+| ...+.+-|+.
T Consensus 613 a~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 613 ANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred cCCcEEEEee--cceEEEEecc
Confidence 9999888776 3567776664
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.8 Score=41.92 Aligned_cols=144 Identities=11% Similarity=0.176 Sum_probs=93.3
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
+.+-|...++ .|++. ..|.+.-|-+...+..-. +..-....++|.+|.|++ +++.+|+--.+..|.+++....+
T Consensus 26 ngvFfDDaNk-qlfav-rSggatgvvvkgpndDVp---iSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANK-QLFAV-RSGGATGVVVKGPNDDVP---ISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcc-eEEEE-ecCCeeEEEEeCCCCCCC---ceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCc
Confidence 3454544444 33333 445566676654432211 122223467999999999 78999999999999999974433
Q ss_pred ccc----cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 250 TQQ----RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 250 ~~~----~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
... +.+.....|....|....+ +|.-+..| +-+|-.......++..+.|+..|+=..|.++.+-.|++.+
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 322 2244455688999987654 56555544 7777766656557778888889999999998875444444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.46 Score=46.66 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=80.4
Q ss_pred CCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccc------------cCCCCCceeeeCCCCCeeEEEec--CCCC
Q 015484 115 DGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQ------------QDDCDPDLRLKGHDKEGYGLSWS--PFKE 179 (406)
Q Consensus 115 ~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~~~~~h~~~v~~l~~~--~~~~ 179 (406)
+..|+.|....- +..+|+.|.+||.|.+|..+.-.... ....+|...+. -...+++++++ ...+
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR 178 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence 345777766552 33689999999999999764321000 01223444444 34578999998 5555
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CC---EEEEEecCCcEEEEEC
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--EN---LFGSAGDDCQLMIWDL 245 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~---~l~~~~~dg~i~i~d~ 245 (406)
+||++++...|.||-+........... -..+...|.+|+|-+.. +. .+++++-.|.+.+|++
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -EEEEecCCceEEEEEEecccccccccc---ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888886654321111111 11256679999998643 22 6778899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.6 Score=38.21 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
...+.+|+.+|.+. +.++...=|.|.++|+....
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh
Confidence 34578899999986 67777778999999998744
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.7 Score=38.22 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=88.8
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEEeCCCcc
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLWDVSALA 200 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~ 200 (406)
+++...|++|+..|.++||+........ .....-..-..+|..++.-+. ....||. =.-..+.+|.+....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~----~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP----EDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC----ccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecC
Confidence 3455789999999999999996532211 112222234578888876431 2213433 345678888874322
Q ss_pred CC----ceeeeeeeeeccC--ccEEEEEeeCCC----CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 201 QD----KVIDAMHVYEAHE--SVVEDVSWHLKN----ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 201 ~~----~~~~~~~~~~~~~--~~i~~i~~~p~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.. .... +.....|. .....++.-|.+ ..++++-+.||.+.+|+-+.-.....+.. ---.-.+.+.+..
T Consensus 109 g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t 186 (418)
T PF14727_consen 109 GTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT 186 (418)
T ss_pred CCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC
Confidence 11 1111 11122222 233344443322 47788889999999999665432222222 1112236777777
Q ss_pred CcEEEEEeCCCcEEEEeCC
Q 015484 271 EWVLATASSDTTVALFDMR 289 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~ 289 (406)
+ .|++++.+..+.-|...
T Consensus 187 D-sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 187 D-SFVTASSSWTLECYKYQ 204 (418)
T ss_pred C-EEEEecCceeEEEecHH
Confidence 6 78888888888888653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.6
Q ss_pred CceeEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 015484 116 GEVNRARCMPQKP--NLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 116 ~~v~~i~~~p~~~--~~l~~~~~dg~i~iw~~~~ 147 (406)
|.|.+++|+|... .+|+..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998664 7898888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.3 Score=37.43 Aligned_cols=249 Identities=14% Similarity=0.163 Sum_probs=114.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC------
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD------ 188 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d------ 188 (406)
..+.|+|.|++ .+++ +...|.|++++............. ............++++|+ ..++|......
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~~~g~~~~~v~~~~--~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVDKDGSLKTPVADLP--EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEETTTEECEEEEE-T--TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEeCCCcCcceecccc--cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 46789999998 5555 466999999993332101000000 112234456789999994 11244333321
Q ss_pred ---CeEEEEeCCCccC-Cceee-eeeeeec---cCccEEEEEeeCCCCCEEEEEecCC-------------cEEEEECCC
Q 015484 189 ---NKICLWDVSALAQ-DKVID-AMHVYEA---HESVVEDVSWHLKNENLFGSAGDDC-------------QLMIWDLRT 247 (406)
Q Consensus 189 ---g~i~iwd~~~~~~-~~~~~-~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~~dg-------------~i~i~d~~~ 247 (406)
..|.-|....... ....+ .+..... .......|.|.| ++.++++.+..+ .|.-.+..
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d- 156 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD- 156 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-
Confidence 2344454443310 00011 1111111 233456699999 557777766433 23333322
Q ss_pred Ccc-------------cccc-cccCCCeeEEEecCC-CCcEEEE-EeCCCcEEEEeCCCCC-------------------
Q 015484 248 NQT-------------QQRV-KAHEKEVNYLSFNPY-NEWVLAT-ASSDTTVALFDMRKMT------------------- 292 (406)
Q Consensus 248 ~~~-------------~~~~-~~~~~~v~~i~~~~~-~~~~l~~-~~~dg~i~vwd~~~~~------------------- 292 (406)
++. ...+ .++ .....++|+|. +. ++++ .+.++.=.|--++.+.
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 110 0011 111 22457899998 65 3333 2223222222122111
Q ss_pred ---------CCcEEecCCCCCeEEEEEcCCCC------CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 293 ---------VPLHILSSHTEEVFQVEWDPNHE------TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 293 ---------~~~~~~~~h~~~v~~i~~~p~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
.|+..+..| ..+..+.|-.... .++++.-..+.|....+...+... ........
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~ 303 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT----------EEEEFLGG 303 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE----------EEEEECTT
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc----------ceEEcccc
Confidence 134444433 5677777764321 245555556677766665321110 11111234
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEE
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~ 385 (406)
....+.++++.|+|. ++++...+|.|.
T Consensus 304 ~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 304 FGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp SSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred CCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 445799999999998 677767788763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.9 Score=39.04 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=82.5
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-------CCCEEEEEecCCcEEEEECCCCcc-ccc
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-------NENLFGSAGDDCQLMIWDLRTNQT-QQR 253 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-------~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 253 (406)
+..|+.-..+.-.|++.++.. ..+..|... -+.|.|. ....| +|-.+..|.-.|.|.... +..
T Consensus 483 ~~dg~~~~kLykmDIErGkvv------eeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVV------EEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred EecCCCcccceeeecccceee------eEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 344555667777788776543 333334433 3556652 12233 455566666668775331 111
Q ss_pred --cc--ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 254 --VK--AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 254 --~~--~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.+ .......|..-...| ++|+++..|-|++||.-. ......+.+-...|..|..+.+|.++|+|| ...+.+
T Consensus 554 ~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL 628 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL 628 (776)
T ss_pred eeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence 11 112223333333333 899999999999999654 222445666678899999999999767666 457777
Q ss_pred EeCCC
Q 015484 330 WDLNR 334 (406)
Q Consensus 330 wd~~~ 334 (406)
-|++-
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 77754
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.0069 Score=55.12 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=100.1
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
.....|-|.+.+ ++.++.+..+..||-.... ..-...++....++|..+++..++.+-..+.+.+||++
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~agq~----------~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAGQV----------ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhcce----------ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 334567787766 6777778888888876621 11112345667889998887567777788999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
+..... + ..-..+.... +.|++ +...++.+...|.+.+++.++.+.......|...+++++|.+.+. .+.+
T Consensus 106 ~eytqq-L---E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~--vil~ 176 (615)
T KOG2247|consen 106 SEYTQQ-L---ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY--VILC 176 (615)
T ss_pred hhhHHH-H---hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce--eeec
Confidence 743211 1 1001122222 67887 677777888999999999988776666666889999999998764 5666
Q ss_pred eCCCcEE
Q 015484 278 SSDTTVA 284 (406)
Q Consensus 278 ~~dg~i~ 284 (406)
+.|..+.
T Consensus 177 dcd~~L~ 183 (615)
T KOG2247|consen 177 DCDNTLS 183 (615)
T ss_pred CcHHHHH
Confidence 6665443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.3 Score=39.70 Aligned_cols=147 Identities=7% Similarity=-0.070 Sum_probs=69.7
Q ss_pred CCCEEEEEecC--CcEEEEECCCCcc--cccccccCCCeeEEEecCCCCcEEEEEeCCC---cEEEEeCCCCCC-CcEEe
Q 015484 227 NENLFGSAGDD--CQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPYNEWVLATASSDT---TVALFDMRKMTV-PLHIL 298 (406)
Q Consensus 227 ~~~~l~~~~~d--g~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~-~~~~~ 298 (406)
++.+++.||.+ ..+..||..+++. +..+.........+.. ++. +.+.|+.++ .+..||.++..- .+..+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57888888754 3577888765533 2222211111122222 354 777777653 467888775321 01111
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.........+.+ ++ .+.+.| |.+.+||..+.. ...+............+.. +++ +.+.|
T Consensus 395 ~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~~------------W~~~~~m~~~r~~~~~~v~--~~~-IYviG 453 (480)
T PHA02790 395 YYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSNT------------WTLIDDPIYPRDNPELIIV--DNK-LLLIG 453 (480)
T ss_pred CCccccceEEEE--CC-EEEEEC---CceEEecCCCCc------------EeEcCCCCCCccccEEEEE--CCE-EEEEC
Confidence 111111112222 33 355555 356778875421 1111111101111112222 445 77777
Q ss_pred eCC-----CcEEEEeCCCcccCCC
Q 015484 379 ADD-----NTVQVWQMTDSIYRDD 397 (406)
Q Consensus 379 ~~d-----g~i~iw~~~~~~~~~~ 397 (406)
|.+ ..+..||+.++.+...
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CcCCCcccceEEEEECCCCeEEec
Confidence 754 4588999988877543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.28 E-value=3.6 Score=36.44 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=75.6
Q ss_pred eCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 163 KGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 163 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
..-.+.+..+.-+++|. ++++++.-....-||--.. ...+.. ......|..+.|.| ++.+.+ ....|.|++
T Consensus 141 ~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~----~w~~~~--r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 141 SETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT----TWQPHN--RNSSRRIQSMGFSP-DGNLWM-LARGGQIQF 211 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S----S-EEEE----SSS-EEEEEE-T-TS-EEE-EETTTEEEE
T ss_pred cCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc----cceEEc--cCccceehhceecC-CCCEEE-EeCCcEEEE
Confidence 34457788888899888 8877766555667775431 111111 22357899999998 456554 448888888
Q ss_pred EE-CCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCCCeEEEEEcCCCC
Q 015484 243 WD-LRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--LSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 243 ~d-~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~i~~~p~~~ 315 (406)
=+ ....+.. ..+....-.+..++|.+.+. +.++|+ .|.+. .....++.=.+. ...-...+..|.|.+..+
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 77 2222221 11222334478999999877 666555 45443 333333321111 112345688899876654
Q ss_pred CEEEEEeCCCcEEEE
Q 015484 316 TVLASSADDRRLMVW 330 (406)
Q Consensus 316 ~~l~s~~~dg~i~iw 330 (406)
-...+.+|.|.-|
T Consensus 289 --gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 --GFVLGQDGVLLRY 301 (302)
T ss_dssp --EEEE-STTEEEEE
T ss_pred --eEEECCCcEEEEe
Confidence 3345568877655
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.7 Score=41.58 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=89.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeee-----------------eeeeccCccEEEEEeeC-CCCCEEEEEecCCcEEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAM-----------------HVYEAHESVVEDVSWHL-KNENLFGSAGDDCQLMI 242 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~i 242 (406)
+|+.|. .+.|.||++.........++. .... ....|+-+.... .+..+|+.+.+||.|.+
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 666654 678999988654321110000 0000 223355544322 25678889999999999
Q ss_pred EECCC-------C----cc------cc-cc-cccCCCeeEEEec--CCCCcEEEEEeCCCcEEEEeCCCC--CCCcEEec
Q 015484 243 WDLRT-------N----QT------QQ-RV-KAHEKEVNYLSFN--PYNEWVLATASSDTTVALFDMRKM--TVPLHILS 299 (406)
Q Consensus 243 ~d~~~-------~----~~------~~-~~-~~~~~~v~~i~~~--~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~ 299 (406)
|.+++ . +. +. .+ ..-...+.+++++ ...+ +||+++....|.||-+... +.....-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEEEEecccccccccccc
Confidence 97631 0 00 00 01 1134567889988 6666 8888888888888755442 11111122
Q ss_pred CCCCCeEEEEEcCCC--C---CEEEEEeCCCcEEEEeC
Q 015484 300 SHTEEVFQVEWDPNH--E---TVLASSADDRRLMVWDL 332 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~--~---~~l~s~~~dg~i~iwd~ 332 (406)
.|...|.+|+|-++. + ..+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 366789999997754 1 15778889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.1 Score=40.96 Aligned_cols=155 Identities=10% Similarity=0.120 Sum_probs=91.3
Q ss_pred EEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--
Q 015484 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-- 293 (406)
Q Consensus 219 ~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 293 (406)
+.+-|.. .++.+++ ...|.+.-|-+..... .-.+ ....++|.++.|+++.+ .||+--.+..|.+++....+.
T Consensus 26 ngvFfDD-aNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDD-ANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeecc-CcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhh
Confidence 4444553 3333333 3344566665554332 2222 23467999999999999 999999999999998843221
Q ss_pred -CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 294 -PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 294 -~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
.....+..+..|.+..|....+ +|-.+ +.-+-+|-..... ..+.....|...|.-..|+++.+
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~-~~G~e~y~v~pek-------------rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFIT-DQGIEFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEe-cCCeEEEEEchhh-------------hhhhhhhhcccCccEEEEccccc
Confidence 1223344455699999998754 55554 3346677665422 22223345667788888888877
Q ss_pred cEEEEEe-CCCcEEEEeCCCc
Q 015484 373 WVISSVA-DDNTVQVWQMTDS 392 (406)
Q Consensus 373 ~~l~s~~-~dg~i~iw~~~~~ 392 (406)
.++.+.+ ..+.+.=+.+..+
T Consensus 167 v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 167 VILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEeeeccccccccccEEEeec
Confidence 5444444 4444444444443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.4 Score=35.55 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=78.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.+....-.++...+||..+. +...++.- .+..+.++ .++. .|+.......|..+|..+.+..+.+...
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl--------~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTL--------KKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp EEEEEESSSSEEEEEETTTT--------EEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred EEEEEEecCCeEEEEccccc--------eEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEE
Confidence 34445567889999999873 33444432 35677887 3466 5666656678999998775443333211
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc---------------ccCCCeeEEEecCCCCcE
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---------------AHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~ 273 (406)
.-...-..++.+.|. ++.+.|-.-....|...|..+|+.+..+. ....-.+.|+++|..+.+
T Consensus 169 -~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 169 -DNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp -ETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred -ECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 000112356777777 57777766667778888888887654330 013468899999998866
Q ss_pred EEEE
Q 015484 274 LATA 277 (406)
Q Consensus 274 l~~~ 277 (406)
++||
T Consensus 246 ~vTG 249 (264)
T PF05096_consen 246 FVTG 249 (264)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.7 Score=39.35 Aligned_cols=141 Identities=10% Similarity=-0.033 Sum_probs=65.7
Q ss_pred cEEEEEeCCC-----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--CeEEEEeCCCccC
Q 015484 129 NLVGTKTSSC-----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--NKICLWDVSALAQ 201 (406)
Q Consensus 129 ~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~ 201 (406)
.++++|+.++ .+..||..... +.....+.........+.. ++. ..+.|+.+ .++..||..+..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~------W~~~~~m~~~r~~~~~v~~--~~~-iYviGG~~~~~sve~ydp~~n~- 342 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNN------WIPIPPMNSPRLYASGVPA--NNK-LYVVGGLPNPTSVERWFHGDAA- 342 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCE------EEECCCCCchhhcceEEEE--CCE-EEEECCcCCCCceEEEECCCCe-
Confidence 5677777543 46677776632 2112222111111122222 344 66777754 357778765432
Q ss_pred CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEE
Q 015484 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 202 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+..+..+....... +++.. ++.+.+.||.++ .+..||.++.+-.. .+.........+.+ ++. +.+.
T Consensus 343 ---W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~-IYv~ 413 (480)
T PHA02790 343 ---WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRR-LFLV 413 (480)
T ss_pred ---EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCE-EEEE
Confidence 21111111111111 22222 578888887654 46788887654322 11111111112222 344 6666
Q ss_pred EeCCCcEEEEeCCCC
Q 015484 277 ASSDTTVALFDMRKM 291 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~ 291 (406)
| |.+.+||.++.
T Consensus 414 G---G~~e~ydp~~~ 425 (480)
T PHA02790 414 G---RNAEFYCESSN 425 (480)
T ss_pred C---CceEEecCCCC
Confidence 6 35778888754
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.011 Score=53.89 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=97.9
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
.....|-+.+. -++.++.+..+..||-..... .. ...++...+++|..+.+..++.+-..+.+.+||+.+.
T Consensus 37 pi~~~w~~e~~-nlavaca~tiv~~YD~agq~~-------le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRPEGH-NLAVACANTIVIYYDKAGQVI-------LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEecCCC-ceehhhhhhHHHhhhhhccee-------cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 34567888887 477777888899998543211 11 1234556678888766667777788899999999865
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
...+--.+....-.-+.|++... .++.|...|.+.+++.+.... +...-.|...+++++|.+.+. .+.++.|..
T Consensus 108 ytqqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~ 181 (615)
T KOG2247|consen 108 YTQQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLEDY--VILCDCDNT 181 (615)
T ss_pred hHHHHhccCcchHHHHhhccCCc-cccccccccceEEEeccchhh-hhhhcccccceeEEEecccce--eeecCcHHH
Confidence 43221112222222267888887 788888999999999887544 333444889999999999884 555555533
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.76 E-value=3.3 Score=41.54 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=54.5
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCC----------Ccc---cccc--------cccCCCeeEEEecCCC--Cc
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT----------NQT---QQRV--------KAHEKEVNYLSFNPYN--EW 272 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~v~~i~~~~~~--~~ 272 (406)
-.|..|..+| .+.+++..|..| |.|..+.. ++. ..++ ......|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688899998 678777777765 44444421 111 0111 2345678899999974 23
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEe
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (406)
.|++-..|+.+++||+.....|...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEE
Confidence 78888999999999998766655443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=3.8 Score=34.26 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=62.6
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEE--CCCCccc-----ccccc---cC-CCeeEEEecCCCCcEEEEEeCCCcEEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWD--LRTNQTQ-----QRVKA---HE-KEVNYLSFNPYNEWVLATASSDTTVAL 285 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~-----~~~~~---~~-~~v~~i~~~~~~~~~l~~~~~dg~i~v 285 (406)
--+.++|+.+...+.++-+.+-.|.-|| ..++... ..++. .. ..--.++....|. +.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEE
Confidence 3467889875556666667777887777 5555431 11111 01 1112344455666 7777777889999
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCC
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|..+++. +..+......|++++|-..
T Consensus 238 ~dp~tGK~-L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKI-LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ECCCCCcE-EEEEEcCCCceEEEEecCC
Confidence 99999876 7777777899999999754
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.41 E-value=3.4 Score=43.24 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=32.5
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK 147 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~ 147 (406)
......+.+.....++|.|.. .++|.++.+|.|++|....
T Consensus 27 ~~~~~~G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 27 DKTNRHGFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ccceecCCCCCCcceeecccc-ceEEEEEecccEEEecccc
Confidence 334455666788889999988 6899999999999998765
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.37 E-value=9.8 Score=38.31 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=53.3
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC--ccC------Cceeeeeee------e-eccCccEEEEEeeCCC--C
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA--LAQ------DKVIDAMHV------Y-EAHESVVEDVSWHLKN--E 228 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~------~~~~~~~~~------~-~~~~~~i~~i~~~p~~--~ 228 (406)
.-.|..|..+++|. +|+..|..|. .|..+.. +.. ...+.|... + ......|..+.|+|.+ +
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 35788999999999 7877777664 4444432 100 112222111 1 1334678999999963 5
Q ss_pred CEEEEEecCCcEEEEECCCCc
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~ 249 (406)
..|++-+.|+.+|+||+....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 778888999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=9.9 Score=38.32 Aligned_cols=198 Identities=7% Similarity=-0.003 Sum_probs=98.1
Q ss_pred CceeEEEEcCCCCcEEEEE-eCCC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 116 GEVNRARCMPQKPNLVGTK-TSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
-.+..+.++|++. +||.+ ..+| .|++.|+.++... ...+.+ . -..++|.++++.++++...+
T Consensus 127 ~~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l-------~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWY-------PELLDN-V--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCC-------CccccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence 3466788999995 45544 3333 5888888763210 011111 1 14699999888455554322
Q ss_pred ---CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECC--CCcccccccccCCC
Q 015484 189 ---NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLR--TNQTQQRVKAHEKE 260 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~--~~~~~~~~~~~~~~ 260 (406)
..|..+++.++..... ..+........-..+.+.++..++..+ .++.+.+++.. .+.....+......
T Consensus 196 ~~~~~v~~h~lgt~~~~d~----lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDE----LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CCCCEEEEEECCCChhHCe----EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence 3577778777632211 112222222221223332444443332 34578888853 23322222212222
Q ss_pred eeEEEecCCCCcEEEEEeCC-C--cEEEEeCCCCCCCcEEecCC-C-CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 261 VNYLSFNPYNEWVLATASSD-T--TVALFDMRKMTVPLHILSSH-T-EEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~h-~-~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
...+. +..+. +++....+ . .|...++..... ...+..+ . ..|..+.+. ++.++++...+|.-+++-+.
T Consensus 272 ~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 272 EYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 22222 33333 33333222 2 344445443222 3344444 2 367888887 33578888888887776654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.5 Score=35.33 Aligned_cols=242 Identities=11% Similarity=0.061 Sum_probs=102.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
++-...+..|.|.... .-+|+|. .|. |+...+... .+.+...-... .-...+|.|.. .. .+++| ..|
T Consensus 13 l~t~~~l~dV~F~d~~-~G~~VG~-~g~--il~T~DGG~----tW~~~~~~~~~~~~~~l~~I~f~~-~~-g~ivG-~~g 81 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPN-HGWAVGA-YGT--ILKTTDGGK----TWQPVSLDLDNPFDYHLNSISFDG-NE-GWIVG-EPG 81 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTS----S-EE-----S-----EEEEEEEET-TE-EEEEE-ETT
T ss_pred cCCCCceEEEEEecCC-EEEEEec-CCE--EEEECCCCc----cccccccCCCccceeeEEEEEecC-Cc-eEEEc-CCc
Confidence 4455689999999555 4566654 454 344444321 12211111110 12356777764 23 44444 455
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~ 268 (406)
. .+...+.+.. ...+..-..-......+.... ..... .++..|.|.. ..+.++.-.. .......+..+.-++
T Consensus 82 ~-ll~T~DgG~t---W~~v~l~~~lpgs~~~i~~l~-~~~~~-l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 82 L-LLHTTDGGKT---WERVPLSSKLPGSPFGITALG-DGSAE-LAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp E-EEEESSTTSS----EE----TT-SS-EEEEEEEE-TTEEE-EEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-T
T ss_pred e-EEEecCCCCC---cEEeecCCCCCCCeeEEEEcC-CCcEE-EEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECC
Confidence 3 3333333322 221111111122233333332 23333 3455555433 2334444332 234457788888899
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
+|. +++++..-....-||.-...- ...-......|..|.|.|++. +.+ ....|.|++=+.........
T Consensus 155 dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~-------- 222 (302)
T PF14870_consen 155 DGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWS-------- 222 (302)
T ss_dssp TS--EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---------
T ss_pred CCc-EEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccc--------
Confidence 998 777776544556777653221 112223457899999999986 333 44889998877222111000
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
+.+.......-.+.+++|.+++. +.++|+ .|.+..
T Consensus 223 -~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 223 -EPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLLV 257 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EEE
T ss_pred -cccCCcccCceeeEEEEecCCCC-EEEEeC-CccEEE
Confidence 00000011123488999999887 666655 554433
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.21 E-value=5.3 Score=36.78 Aligned_cols=146 Identities=11% Similarity=0.128 Sum_probs=73.8
Q ss_pred CeeEEEecCCCCCeEEEec-----------CCC-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 168 EGYGLSWSPFKEGYLVSGS-----------HDN-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
...+|+|.++|. ++++-. ..+ .|.+++-..+.-. ......+...-.....+++.+ ++ +++ +.
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~ 88 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAV-GG-VYV-AT 88 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEec-CC-EEE-eC
Confidence 345889998887 555532 223 6777764332111 111122222234567888887 44 554 44
Q ss_pred cCCcEEEEECCCC-----cc---cccccc----cCCCeeEEEecCCCCcEEEEEeCC------------------CcEEE
Q 015484 236 DDCQLMIWDLRTN-----QT---QQRVKA----HEKEVNYLSFNPYNEWVLATASSD------------------TTVAL 285 (406)
Q Consensus 236 ~dg~i~i~d~~~~-----~~---~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~d------------------g~i~v 285 (406)
.....++.|.... +. +..+.. +....+.+.|.|+|..++..|+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4443334455321 11 111221 134477899999998444444211 33444
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
+|..... +..+...-.....++|+|+++ ++++-.
T Consensus 169 ~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 169 YNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EecCCCe--EEEEecCcCCCccceECCCCC-EEEEcc
Confidence 5544322 223322233467899999986 555543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.01 E-value=6 Score=36.07 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=76.0
Q ss_pred EEecCCCCCeEEEecCCCe--EEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 172 LSWSPFKEGYLVSGSHDNK--ICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
=+|.++|+.+|+++..||. +.+.|+.++.. ..+.... .......++|.+ +.++-......|+-.|++++
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcC
Confidence 3678888867777776765 55556666432 1122211 222245567754 55444555568899999998
Q ss_pred cccccccccCCCeeEEEec--CCCCcEEEEEe----------------------CCCcEEEEeCCCCCCCcEEecCCCCC
Q 015484 249 QTQQRVKAHEKEVNYLSFN--PYNEWVLATAS----------------------SDTTVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~--~~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
+....+......+-...|. .++. .++..- -...|...|+++++ ...+..-...
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~w 189 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDW 189 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-
T ss_pred cEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCcc
Confidence 7655555455555445553 3344 332211 11234555666543 3344444567
Q ss_pred eEEEEEcCCCCCEEEEEeC---CCc-EEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSAD---DRR-LMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~---dg~-i~iwd~~~~~ 336 (406)
+..+.|+|..+.+|+-|-+ +.. -+||-++..+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg 225 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG 225 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence 8899999999886666554 221 3677666533
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.98 E-value=10 Score=37.42 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=94.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
-+.+-++..+|..-.-+. +.--.|+||+.... +...+.-....+-.+.|+.+. .|++...+|++.+|
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~---------lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy 109 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQ---------LLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVY 109 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEecccc---------chHHHHhcCCCeeeecccCCc--eEEEEeccceEEEe
Confidence 345556666663311122 33456889988762 222222223377799999765 47778899999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE-CCCCcccccc---cccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD-LRTNQTQQRV---KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~---~~~~~~v~~i~~~~~~ 270 (406)
++-...... .. + .+......|..+.+.. +.++ +-..+|.+.+-. .... ....+ .....+-+|-...+.+
T Consensus 110 ~~~ge~ie~-~s-v-g~e~~~~~I~ec~~f~--~GVa-vlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~ 182 (829)
T KOG2280|consen 110 GLLGEFIES-NS-V-GFESQMSDIVECRFFH--NGVA-VLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPH 182 (829)
T ss_pred ecchhhhcc-cc-c-ccccccCceeEEEEec--CceE-EEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCC
Confidence 986432111 00 0 0111222344444432 2332 233344444432 2221 12222 1111111222222221
Q ss_pred C--cEEEEEe-CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 271 E--WVLATAS-SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 271 ~--~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
. ..++--. ..+ ..++-..........+....+.+..+..+|+.+ +|+--...|.|.+-+...
T Consensus 183 ~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 183 RQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDL 247 (829)
T ss_pred CcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecch
Confidence 1 1111111 111 122222222222233333346788999999997 588888899998887765
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.6 Score=40.78 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC----------eeEEEecCCCCCeeeEEeCCCC--
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP----------ELLFSHGGHKAKISDFSWNKND-- 371 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~-- 371 (406)
.|..+..++.|. .++-+|.+|.+.++=.+..+..... +++.+ ..++... ..-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~---eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEF---EDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCcccee---cCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence 478889999997 5777777888777654433322111 12211 1222222 22357789999986
Q ss_pred CcEEEEEeCCCcEEEEeCCCc
Q 015484 372 PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-.+..-+.|+.||+|+++..
T Consensus 180 D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceEEEEecCcEEEEEecCCc
Confidence 224555567999999999764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.75 E-value=5.9 Score=34.11 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=103.8
Q ss_pred eEEEEEeecCCc--eeEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCe
Q 015484 106 VEIAQKIRVDGE--VNRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181 (406)
Q Consensus 106 ~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 181 (406)
+++.+.++|... ...+.|..++ .++-+.+.-| .|+.+|+.++.... ...+.. .--.-+++... +. +
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~------~~~l~~-~~FgEGit~~~-d~-l 102 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ------SVPLPP-RYFGEGITILG-DK-L 102 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE------EEE-TT-T--EEEEEEET-TE-E
T ss_pred eEEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE------EEECCc-cccceeEEEEC-CE-E
Confidence 577888888744 4557776666 5666666666 68888988743211 111211 11122344432 22 4
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc----
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH---- 257 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 257 (406)
..-.-.++...+||..+.+. +..+. ..+.=..++.. +..++ .......|+++|..+.+....+...
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~------~~~~~-y~~EGWGLt~d--g~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKK------IGTFP-YPGEGWGLTSD--GKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EEEESSSSEEEEEETTTTEE------EEEEE--SSS--EEEEC--SSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EEEEecCCeEEEEccccceE------EEEEe-cCCcceEEEcC--CCEEE-EECCccceEEECCcccceEEEEEEEECCE
Confidence 45555788999999987533 23332 23455666632 44554 4444668999998877665555221
Q ss_pred -CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---------------CCCCCeEEEEEcCCCCCEEEEE
Q 015484 258 -EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---------------SHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 258 -~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
-..++-+.|- +|. +.|=.-....|...|..++.. ...+. ....-.+.|+|+|..+.+++||
T Consensus 173 pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 PVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 2345556665 343 444444455666666666543 11110 1135689999999998888877
Q ss_pred e
Q 015484 322 A 322 (406)
Q Consensus 322 ~ 322 (406)
=
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 3
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.7 Score=35.07 Aligned_cols=32 Identities=3% Similarity=0.336 Sum_probs=26.9
Q ss_pred CeeeEEeCCCC-----CcEEEEEeCCCcEEEEeCCCc
Q 015484 361 KISDFSWNKND-----PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 361 ~v~~~~~s~~~-----~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.|.+++|||.| +.+|++.+.++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 68899999954 448999999999999998753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.54 E-value=9 Score=35.72 Aligned_cols=276 Identities=12% Similarity=0.119 Sum_probs=138.7
Q ss_pred hhhhhhcCh--hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCC
Q 015484 17 FTVWKKNTP--FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNV 94 (406)
Q Consensus 17 ~~~wk~~~~--~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~ 94 (406)
.++.+++.. -..+.+...++.-|.|.++.-+..... ....+++ -+++.+.|.++... ++. .
T Consensus 49 LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~-------~~~~LaV------LhP~kl~vY~v~~~-~g~-~-- 111 (418)
T PF14727_consen 49 LRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGS-------EDLQLAV------LHPRKLSVYSVSLV-DGT-V-- 111 (418)
T ss_pred EEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCC-------CcceEEE------ecCCEEEEEEEEec-CCC-c--
Confidence 344554332 234688888888899888886542221 0011211 25677777777543 111 0
Q ss_pred CCCCCCCCCCCeEEEEEeecC--CceeEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC
Q 015484 95 GGKNENPVIPKVEIAQKIRVD--GEVNRARCMP----QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE 168 (406)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~h~--~~v~~i~~~p----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 168 (406)
+. ....++...+.|. .....+++-| .++.++.+-+.||.+.+|+-+...- ...+.+ ---
T Consensus 112 ----~~--g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--------~~~lp~-~ll 176 (418)
T PF14727_consen 112 ----EH--GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--------SRFLPD-FLL 176 (418)
T ss_pred ----cc--CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--------EEEcCC-CCC
Confidence 11 1234555555554 4444444444 3357899999999999999876321 112222 111
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCcc-----------------CCceeeeeeeeeccCccEEEEE---eeCCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALA-----------------QDKVIDAMHVYEAHESVVEDVS---WHLKNE 228 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~i~~i~---~~p~~~ 228 (406)
--.+.+.+... .|++++.+..+.-|...... ..+.+.+-..+.- ...+.+|. ++....
T Consensus 177 PgPl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 177 PGPLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSES 254 (418)
T ss_pred CcCeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCc
Confidence 12467777666 88888888888888753211 1122222222221 22333333 322122
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE-------ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS-------FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~-------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 301 (406)
.++ +-+ ..++.+.+- +|......+ ......++. ..|.....+++++.++.+.||.=.+ +..-...
T Consensus 255 ~Iv-vLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~----L~WsA~l 326 (418)
T PF14727_consen 255 DIV-VLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT----LVWSAQL 326 (418)
T ss_pred eEE-EEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe----EEEecCC
Confidence 333 222 234555554 233221111 121112211 1223223588889999999986432 1111111
Q ss_pred CCCeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 302 TEEVFQVEW--DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 302 ~~~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.....++.. -++-+.+|++-+.+|.+.+-=+.+
T Consensus 327 ~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 111122222 222244899999999999887766
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=13 Score=37.43 Aligned_cols=200 Identities=11% Similarity=0.152 Sum_probs=97.2
Q ss_pred CeeEEEecCCCCCeEEEe-cCC----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----
Q 015484 168 EGYGLSWSPFKEGYLVSG-SHD----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----- 237 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----- 237 (406)
.+..+.|+|+++ +|+.+ +.+ ..|++.|+.++.... ..+.. .-..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLDN---VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCC-----ccccC---cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 456788999988 65554 223 358888887653210 11111 114589998655666655432
Q ss_pred CcEEEEECCCCc--ccccccccCCCee-EEEecCCCCcEEEEEeC--CCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEc
Q 015484 238 CQLMIWDLRTNQ--TQQRVKAHEKEVN-YLSFNPYNEWVLATASS--DTTVALFDMRKMT-VPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 238 g~i~i~d~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~ 311 (406)
..|+.+++.++. ....+........ .+..+.++.++++.... ++.+.+++..... .+...+.........+. +
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 367888888773 2233332223233 23334467744433332 3578888854321 11222222222223332 3
Q ss_pred CCCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 312 PNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 312 p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..+ .+++.... ....+|..+.-... .....+.... ....|..+.+.. .+++++...+|.-+++-+.
T Consensus 278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~-~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQH-RFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPR-ENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCC-EEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCC-CCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence 233 33333322 22333433321100 1122332221 123577788873 3478888888876666554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.6 Score=35.26 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=25.4
Q ss_pred CeeEEEecCCC-----CCeEEEecCCCeEEEEeCCC
Q 015484 168 EGYGLSWSPFK-----EGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 168 ~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+.+++|||.| +.+|++...+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 34788899999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=91.84 E-value=7.8 Score=33.49 Aligned_cols=148 Identities=7% Similarity=0.078 Sum_probs=80.9
Q ss_pred ceeEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 117 EVNRARCMPQKPNLVGTK--TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
.+...+.++++..+.++. .....++++..... . ...+. ...+..-.|++++. ..+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------V--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------c--eeecc--CCccccccccCCCC-EEEEEcCCCceEEE
Confidence 688899999996555544 23445666654431 1 11122 23677889999866 55555556666666
Q ss_pred e-CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE--ecCCcEEEEECCC---C--cc----cccccccCCCee
Q 015484 195 D-VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA--GDDCQLMIWDLRT---N--QT----QQRVKAHEKEVN 262 (406)
Q Consensus 195 d-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~i~d~~~---~--~~----~~~~~~~~~~v~ 262 (406)
. ...+... ... .........|..+.++|++.++.+.. ..++.|.+--+.. + .. ..........+.
T Consensus 93 ~~~~~g~~~-~~~--v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 93 RDSASGTGE-PVE--VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EecCCCcce-eEE--ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 4 2222211 110 01111112899999999655554444 2356677665432 2 01 111122356789
Q ss_pred EEEecCCCCcEEEEEeCC
Q 015484 263 YLSFNPYNEWVLATASSD 280 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~d 280 (406)
.++|.+++. +++.+...
T Consensus 170 ~v~W~~~~~-L~V~~~~~ 186 (253)
T PF10647_consen 170 DVAWSDDST-LVVLGRSA 186 (253)
T ss_pred eeeecCCCE-EEEEeCCC
Confidence 999999988 54444443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.82 E-value=4.5 Score=30.67 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=69.7
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~iw 194 (406)
..-+|....+ .|++++..|+|.|++.............++ .+-.-...|++|+-.+- +...|+.|+. ..+..|
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 3446666675 588888999999999876543221112223 33345677888865442 2336777754 679999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeC---CCCCEEEEEecCCcEEEEECCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHL---KNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|+...... .++.-...|+++.+-. ....++++ +-+..|.-||....
T Consensus 79 DV~~N~d~-------Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 79 DVENNSDL-------FYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGN 127 (136)
T ss_pred EcccCchh-------hhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCc
Confidence 99875431 1223345677776632 12344444 44566777775543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.6 Score=46.37 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=93.7
Q ss_pred eEEEEEeecCCceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEE----------
Q 015484 106 VEIAQKIRVDGEVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS---------- 173 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---------- 173 (406)
+.+.-.-+-...+.-+.|+|- +..++..+-.+++|++..+.... ...+.+|...+..++
T Consensus 171 l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---------~~l~rsHs~~~~d~a~~~~g~~~l~ 241 (1283)
T KOG1916|consen 171 LEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---------RSLFRSHSQRVTDMAFFAEGVLKLA 241 (1283)
T ss_pred eEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH---------HHHHHhcCCCcccHHHHhhchhhhe
Confidence 333333334466788888872 22567778888999998877632 233556777666655
Q ss_pred -ecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCC--------CCEEEEEe-cCCcEEE
Q 015484 174 -WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKN--------ENLFGSAG-DDCQLMI 242 (406)
Q Consensus 174 -~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~--------~~~l~~~~-~dg~i~i 242 (406)
.+|+|. .+++++.||.++.|.+.-... ....++...+.|. .+-.|..|+.+. -.++++++ .+..+++
T Consensus 242 ~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~ 319 (1283)
T KOG1916|consen 242 SLSPDGT-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKF 319 (1283)
T ss_pred eeCCCCc-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeE
Confidence 477777 888888888888887643211 2234555566665 333333343211 01233333 3456788
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCc-----------EEEEEeCCCcEEEEeCCC
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEW-----------VLATASSDTTVALFDMRK 290 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----------~l~~~~~dg~i~vwd~~~ 290 (406)
|....-+++ +...-..|..+. -++++- .++.-+-++.|.+|--+.
T Consensus 320 w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 320 WAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 876655554 222223344444 223321 123344567787875544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.27 Score=48.59 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=64.7
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC--ccCCceeeeeeeeeccC
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA--LAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~ 215 (406)
+-|++-+.... ......+++..+.+-.++|-..+-..+. -.-|.+.||++.- ++....+. +.......
T Consensus 111 ~~vrvaN~~~s-------m~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~-v~~~~p~g 180 (1283)
T KOG1916|consen 111 NGVRVANQEPS-------MRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLE-VTPITPYG 180 (1283)
T ss_pred hhhhhccCcch-------hHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceE-EeecCcCC
Confidence 44666666542 1112335677788888888654322333 3447789999865 22222111 11122223
Q ss_pred ccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 216 SVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 216 ~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
..+.-|.|.|. +..++..+-.++.+++....+... ..+..|...+..++|-..|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 34455555542 345566666788888877654332 3344577766666654433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.70 E-value=8.6 Score=31.87 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=62.2
Q ss_pred CEEEEEecCCcEEEEECCCCc--ccccccccCCCeeEEEecCCCCcEEEEEeCCC------cEEEE-eCCC---CCCCcE
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPYNEWVLATASSDT------TVALF-DMRK---MTVPLH 296 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg------~i~vw-d~~~---~~~~~~ 296 (406)
..|..+...+.|.+|++.+.. ....+. .-+.|..+.++..|+ +|++--.+. .+++| +.|. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 444344666789999998433 244444 347899999999999 777754322 45664 2222 122222
Q ss_pred -EecC---------------------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 297 -ILSS---------------------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 297 -~~~~---------------------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+-+ -+.++.+++..|.... |+.|+ ++.+.+|.+..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEE
Confidence 1112 1345778888887666 44554 66899998865
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.65 E-value=8.7 Score=31.85 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=64.1
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---C---eEEEE---eCCCc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---N---KICLW---DVSAL 199 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g---~i~iw---d~~~~ 199 (406)
+.|..+.....|.+|++... ...+...+..- +.|..+.++..|+ +|+|--.+ . .+|+| +....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~------~~~~~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE------ECPLLCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC------CCceeEEEcch-hheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 34444466778999999842 34555555543 7899999999998 99986332 2 55664 22211
Q ss_pred cCCce-e---------------e-eeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 200 AQDKV-I---------------D-AMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 200 ~~~~~-~---------------~-~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
...+. . . .+.... .-..++.+++..|..+++++. .++.+.+|.+...
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQ 165 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEE
Confidence 10000 0 0 001110 123467788888877887743 3457888877643
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.7 Score=36.64 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=45.8
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEE------ec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHI------LS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..+. +|++-+.+|.+++||+.+.+..+.. +. .....|..+..+.+|. -+++-+ +|..+.|+..-
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 3466 7888889999999999987642221 21 3456789999998885 455544 68889998764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.52 E-value=5.5 Score=37.45 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=47.8
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--------Cc----------EEec-CCCCCeEEEEEcCCC--CCEE
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--------PL----------HILS-SHTEEVFQVEWDPNH--ETVL 318 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------~~----------~~~~-~h~~~v~~i~~~p~~--~~~l 318 (406)
.|..+..++.|. .++-.+.+|.+.++=.+.... +. ..+. ...-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467788889888 666667777554443221110 00 0111 112246778999987 4457
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 015484 319 ASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~ 336 (406)
..-+.|..|++||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 778889999999998743
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.36 E-value=5.4 Score=41.75 Aligned_cols=152 Identities=13% Similarity=0.240 Sum_probs=88.8
Q ss_pred EecCCcEEEEECCCCcccccccccCCCeeEEEe-c-------CCCCcEEEEEeCCCcEEEEeCCCCCC--Cc------EE
Q 015484 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF-N-------PYNEWVLATASSDTTVALFDMRKMTV--PL------HI 297 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~-~-------~~~~~~l~~~~~dg~i~vwd~~~~~~--~~------~~ 297 (406)
.+.|..+.+|+..++.....+.+....|..+.. . |.=+++|+.++. -.|.++-+.-.+. .. ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 456889999999998777777666666666553 2 222334554443 3455553322111 01 11
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc-------cc---cc-ccCCCCeeEEEecCCCCCeeeEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ-------LE---LD-AEDGPPELLFSHGGHKAKISDFS 366 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~---~~-~~~~~~~~~~~~~~h~~~v~~~~ 366 (406)
+......|++|....+|+ ++. +|.|| .+|.+.-..... +. .. ...-.+.+......+..+|..++
T Consensus 174 i~~dg~~V~~I~~t~nGR-IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGR-IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eecCCceEEEEEeccCCc-EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 222345789999888886 454 55566 555553211100 00 00 00001122222236778999999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 367 WNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 367 ~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...... ++.+-++.|+|++|++..
T Consensus 250 ID~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccc-eeeeeccCceEEEEEccC
Confidence 987766 899999999999999987
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.29 E-value=12 Score=32.87 Aligned_cols=207 Identities=16% Similarity=0.199 Sum_probs=112.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC---Cceeeeeeeeec-----cCccEEEEEeeCC-----------CC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ---DKVIDAMHVYEA-----HESVVEDVSWHLK-----------NE 228 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~-----~~~~i~~i~~~p~-----------~~ 228 (406)
.-+.|+++|.+. +-++....+...+||...... ...+ ...+.. .....+.+.|+.. ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 457899999887 777777788999999872211 1111 111111 2345777777742 12
Q ss_pred CEEEEEecCCcEEEEECCCCcc-----ccccc-ccCCCe-eEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCCCc-EEe
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQT-----QQRVK-AHEKEV-NYLSFNP--YNEWVLATASSDTTVALFDMRKMTVPL-HIL 298 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~~v-~~i~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~ 298 (406)
..|+.+++||+|.-|...-... ...+. .....| ..+++.. .+..+.++--..++|.|||-.-....+ ..+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3366788999999998643322 11111 112333 3344443 345455665677899999865322111 001
Q ss_pred cCCC-----C--CeEE---------EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe--cCCCC
Q 015484 299 SSHT-----E--EVFQ---------VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH--GGHKA 360 (406)
Q Consensus 299 ~~h~-----~--~v~~---------i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~ 360 (406)
.... . .|.. ..-.+.... =+.+..-|.|-+||+.- .++..+ .+.-.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-~v~G~G~G~VdvFd~~G---------------~l~~r~as~g~LN 244 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND-EVAGAGLGYVNVFTLNG---------------QLLRRVASSGRLN 244 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccc-cccCCCcceEEEEcCCC---------------cEEEEeccCCccc
Confidence 1000 0 0111 111111111 12233346788888764 444433 34445
Q ss_pred CeeeEEeCC------CCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 361 KISDFSWNK------NDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 361 ~v~~~~~s~------~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.|+..| .+. +|+.--.||.|..+|..++.+
T Consensus 245 aPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCce
Confidence 567777755 345 676666799999999987764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.6 Score=24.94 Aligned_cols=29 Identities=3% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCC--CcEEEE
Q 015484 359 KAKISDFSWNKNDPWVISSVADD--NTVQVW 387 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~d--g~i~iw 387 (406)
...-....|+|+|++++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567889999999888888888 877777
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.7 Score=24.77 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=23.3
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADD--RRLMVW 330 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iw 330 (406)
......-....|+|+|++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678889999999888888877 777666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.35 E-value=3.3 Score=34.89 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=44.4
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccc-------c-------ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRV-------K-------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
.+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|. -+++- .+|..+.|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEecccc
Confidence 4677889999999999999988763221 2 3456778888887776 45544 457788887654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.98 E-value=17 Score=32.79 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=109.2
Q ss_pred CCeeEEEecCCCCCeEEEecCCCe------EEEEeCCCcc-CCceeee--eeeeeccC--------ccEEEEEeeCCCCC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNK------ICLWDVSALA-QDKVIDA--MHVYEAHE--------SVVEDVSWHLKNEN 229 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~------i~iwd~~~~~-~~~~~~~--~~~~~~~~--------~~i~~i~~~p~~~~ 229 (406)
+...+|.+.+.+. .+++.+.+|. +..+++.... ....+.. ...+.... .-..+|++.+ ++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 5678899987555 6777777777 6656555411 1111111 11111111 1345788844 677
Q ss_pred EEEEEecC------CcEEEEECCCCcccccc---------------cccCCCeeEEEecCCCCcEEEEEeC-----CC--
Q 015484 230 LFGSAGDD------CQLMIWDLRTNQTQQRV---------------KAHEKEVNYLSFNPYNEWVLATASS-----DT-- 281 (406)
Q Consensus 230 ~l~~~~~d------g~i~i~d~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~~l~~~~~-----dg-- 281 (406)
++++.-.+ ..|..++.. ++....+ ...+...-+|+++|+|. .|+++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCcc
Confidence 77666566 678888876 5543332 11345677899999998 4444432 22
Q ss_pred c-------EEE--EeCCCCCCCcE----EecC-----CCCCeEEEEEcCCCCCEEEEE-e----CCCcEEEEeCCCCCc-
Q 015484 282 T-------VAL--FDMRKMTVPLH----ILSS-----HTEEVFQVEWDPNHETVLASS-A----DDRRLMVWDLNRIGD- 337 (406)
Q Consensus 282 ~-------i~v--wd~~~~~~~~~----~~~~-----h~~~v~~i~~~p~~~~~l~s~-~----~dg~i~iwd~~~~~~- 337 (406)
. +++ ||..+...+.. .+.. ....|..+.+-++++ +|+-= + ....++|+.+.-...
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~at 254 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSDAT 254 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccccc
Confidence 1 444 45444222222 2221 346789999999997 44432 1 234556655543211
Q ss_pred -cccc--cc---ccCCCCeeEEEecC---CCCCeeeEEeCC--CCCcEEEEEeCCCc
Q 015484 338 -EQLE--LD---AEDGPPELLFSHGG---HKAKISDFSWNK--NDPWVISSVADDNT 383 (406)
Q Consensus 338 -~~~~--~~---~~~~~~~~~~~~~~---h~~~v~~~~~s~--~~~~~l~s~~~dg~ 383 (406)
.... .. .......+++.+.. ....+-.|+|-| +|...|+..+.|+.
T Consensus 255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 1100 00 01111223322222 145677888876 56555666665553
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=8.3 Score=40.50 Aligned_cols=139 Identities=16% Similarity=0.303 Sum_probs=78.8
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--------eCCCCCEEEEEecCCcEEEEECC----CCccc--
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--------HLKNENLFGSAGDDCQLMIWDLR----TNQTQ-- 251 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--------~p~~~~~l~~~~~dg~i~i~d~~----~~~~~-- 251 (406)
+.|..+.+|+.+++... ..+.+....|..+.. .|.=..+|+.++ --.|.++-+. ++..-
T Consensus 96 TiDn~L~lWny~~~~e~------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCcc------ccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccc
Confidence 35788999999985442 222333334444432 221123333333 3345554332 22110
Q ss_pred ---ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC----CC-------CC------------CcEEec-CCCCC
Q 015484 252 ---QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR----KM-------TV------------PLHILS-SHTEE 304 (406)
Q Consensus 252 ---~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~----~~-------~~------------~~~~~~-~h~~~ 304 (406)
..+......|+++....+|+ +++ ++.||. +|.+- .+ +. .+..+. .+..+
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR-IFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc-EEE-eecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 12233456788999778887 555 455664 44331 10 00 022223 56779
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
|..|+...... ++.+-+..|+|.+||+...+
T Consensus 245 I~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 245 IRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence 99999987764 89999999999999998744
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.47 E-value=9.2 Score=29.05 Aligned_cols=114 Identities=9% Similarity=0.103 Sum_probs=66.0
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCc--eeeeeeeeeccCccEEEEEeeC----CCCCEEEEEecCCcEEEEEC
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDK--VIDAMHVYEAHESVVEDVSWHL----KNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~p----~~~~~l~~~~~dg~i~i~d~ 245 (406)
-.|....+ .|++++.-|.|.|.+........ .-..+..+. -...|++++-.+ .....|+.|+ ...|..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 35555556 78888889999999876543211 111222222 355677776443 2355665555 467999999
Q ss_pred CCCcccccccccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCC
Q 015484 246 RTNQTQQRVKAHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~ 290 (406)
.....+.... -...|+++.+-.- ...++++|+ +..|.-||...
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 8776544333 3466777776321 121455444 45677666553
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=86.86 E-value=32 Score=33.50 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=35.7
Q ss_pred cEEEEECCCCcccccccccCCCe---------eEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEV---------NYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v---------~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+|.-.|+++++..-.++.....+ .-+....+|+ ..++.+..+|.+++.|.++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 67778899998765553322211 1122223443 4788999999999999988753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.28 E-value=27 Score=32.12 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=76.1
Q ss_pred CceeEEEEcCCCCcEEEEEe-----------CCC-eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKT-----------SSC-EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-----------~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.....|+|.++| +++++-. ..+ .|.+++-.+... .......+...-....++++.+++ +++
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG----~~d~~~vfa~~l~~p~Gi~~~~~G--lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDG----KYDKSNVFAEELSMVTGLAVAVGG--VYV 86 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC----CcceeEEeecCCCCccceeEecCC--EEE
Confidence 567788999998 4444432 223 677776543211 111123333333455788888755 444
Q ss_pred EecCCCeEEEEeCCCccCCc-eee-eeeeeec----cCccEEEEEeeCCCCCEEEEEecC-------------------C
Q 015484 184 SGSHDNKICLWDVSALAQDK-VID-AMHVYEA----HESVVEDVSWHLKNENLFGSAGDD-------------------C 238 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~d-------------------g 238 (406)
++.....++.|.+...... ..+ .+..+.. +......++|.| ++.+.++.+.. |
T Consensus 87 -~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 87 -ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred -eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence 3344333343544321111 111 1122221 234577899998 56666554421 3
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
.|.-++...++. ..+...-.....++|+|+|. ++++-.
T Consensus 165 ~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 165 GLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred eEEEEecCCCeE-EEEecCcCCCccceECCCCC-EEEEcc
Confidence 455555554432 22221223346799999988 555533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=9.1 Score=35.40 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=94.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eCC-CCCee-EEEecCCCCCeEEEecCCCeE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KGH-DKEGY-GLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~l~~~~~~~~~l~s~~~dg~i 191 (406)
...|..+-..|+++ .+..-+. .++.|+++.+..... +..... .+. ...|+ .+..-.-|. .|+.++.||-|
T Consensus 220 ~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~----rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~v 292 (733)
T COG4590 220 FSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQI----RKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLV 292 (733)
T ss_pred ccchHhhEECCCCC-EEEEecC-CeEEEEeecccccch----hhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCce
Confidence 36777788899985 4443333 678889887743211 101111 110 01122 122222233 68888899998
Q ss_pred EEE-eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 192 CLW-DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iw-d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.-| |++.... ..+..++.++-...++..+.-. ++.+-|++-...|.+..+.....+.+..-.. -....-++++|.+
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~ 369 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCccc
Confidence 877 5555433 3343344444334455444433 3566788888999998887655544322222 2245668999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
. ++++- ..|.|+++.+.+..
T Consensus 370 ~-~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 370 A-YLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred c-hheee-cCCceEEEEecCCC
Confidence 8 56554 45789999887754
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=85.33 E-value=14 Score=33.54 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=54.2
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEecC-------
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAGDD------- 237 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d------- 237 (406)
-++|+|.|++. +++ +...|.|++++ ..+.....+..+ ............++++|. ++.++++.+..
T Consensus 4 P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 46899999976 555 56699999999 333221111111 112234567889999983 24444444422
Q ss_pred -CcEEEEECCCC--c-----cc-cccc---ccCCCeeEEEecCCCCcEEEEEe
Q 015484 238 -CQLMIWDLRTN--Q-----TQ-QRVK---AHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 238 -g~i~i~d~~~~--~-----~~-~~~~---~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
..|.-|..... . .+ ..+. ........|.|.|++..++.+|+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23333433322 1 01 1111 23455677999999974444443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=85.12 E-value=48 Score=33.94 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc----cccc--CCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE----LDAE--DGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
..|.+|.-..-+. +++.+-.||+|.++|-.+....... .... ......-+.+ .+...+..++|||++- .++
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c-~~v 336 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMC-SLV 336 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc-ccCCCCceEEECcccc-eEE
Confidence 3466777666664 6888999999999998886543332 1000 0001111122 1223566799999998 677
Q ss_pred EEeCCCcEE
Q 015484 377 SVADDNTVQ 385 (406)
Q Consensus 377 s~~~dg~i~ 385 (406)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 778888866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.61 E-value=52 Score=33.85 Aligned_cols=168 Identities=7% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCCCCeeEEEec---CC--CCCeEEEecCCCeEEEEeCCCccC------C---ceeeeeeeee---ccCccEEEEEeeCC
Q 015484 164 GHDKEGYGLSWS---PF--KEGYLVSGSHDNKICLWDVSALAQ------D---KVIDAMHVYE---AHESVVEDVSWHLK 226 (406)
Q Consensus 164 ~h~~~v~~l~~~---~~--~~~~l~s~~~dg~i~iwd~~~~~~------~---~~~~~~~~~~---~~~~~i~~i~~~p~ 226 (406)
.-..+|..|+|. .. ....++..-....+.|+...-.+. . -...++..+. ....+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456789999988 21 111344444566777777221111 0 0112222222 23457889999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCcc----cccc-ccc----------CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQT----QQRV-KAH----------EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~----------~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
+...||.....|...||++..... ...+ ... ...-..|.|.++.. .|++++. ..+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceEEEECCCC
Confidence 999999999999999999921111 1111 011 12234788887766 5666654 57999999876
Q ss_pred CCCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 292 TVPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 292 ~~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...- .........|..+.-+|.....+..-. ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5411 222334567899998888332222222 24677777766
|
These proteins are found in fungi. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=35 Score=31.77 Aligned_cols=112 Identities=5% Similarity=0.022 Sum_probs=61.7
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-C---CcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-V---PLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~---~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
....+.++.+.+++. +++++ ..|.+..=+ ..+. . ....... ....+..+.|.+++. ++.++..|.+...
T Consensus 279 ~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s 353 (398)
T PLN00033 279 SARRIQNMGWRADGG-LWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRS 353 (398)
T ss_pred CccceeeeeEcCCCC-EEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEe
Confidence 355688999999888 55444 566654432 2211 0 1222221 123589999998875 5566678877665
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
.-. ++.- .....-..-....+.+.|.++++ .+++ +.+|.|--|
T Consensus 354 ~D~--G~tW----------~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 354 TDG--GKSW----------KRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred CCC--Ccce----------eEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 322 2111 11111112234577899988776 3555 557876554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=83.80 E-value=30 Score=30.44 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=65.1
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccccc-----c
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRVKA-----H 257 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~ 257 (406)
..|++||....+-.. . -.+-.+.|+++.|.. +..++++|. ....+..||..+... ..+.. -
T Consensus 16 ~~lC~yd~~~~qW~~----~--g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS----P--GNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCEeec----C--CCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 469999988743211 1 112457899999984 567776664 456788899886643 22222 2
Q ss_pred CCCeeEEEecC-CCCcEEEEEe-CCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 258 EKEVNYLSFNP-YNEWVLATAS-SDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 258 ~~~v~~i~~~~-~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.++|..+.+.. ++..+.+.|. .+| .|..||-.+....-.........|..+.+-|
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 46788887743 3333554544 333 5777776554431111222244566665543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.36 E-value=3.6 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=22.8
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 225 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
|++..++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 33455666666789999999988776666543
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=82.98 E-value=49 Score=33.29 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=40.9
Q ss_pred eeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 261 VNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-..++|-|+|. .+++-..|| .|.++.......- ...-.+-...+..++|+-... +...+..+.+.+|-..+
T Consensus 249 e~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~--vlav~~~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST--VLAVAEGNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH--HHHHhhcceEEEEEccc
Confidence 34589999999 888877555 3555543322110 001112234466677876653 33444567899998765
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=37 Score=30.82 Aligned_cols=155 Identities=7% Similarity=0.045 Sum_probs=79.8
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
...+.++.+.| ++.++ ..+..|.+..-.-..++..... ......++++.+.++++ +++++ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 45688889887 44444 5555665543211122222222 23456789999999888 55554 457654322222211
Q ss_pred CcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 294 PLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 294 ~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
-..... ....+..+.+.|++. +..++.+|.+.. .... +... +.+....+-....+.+.|..
T Consensus 248 -W~~~~~~~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~-S~d~-G~tW----------~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 248 -WSKPIIPEITNGYGYLDLAYRTPGE--IWAGGGNGTLLV-SKDG-GKTW----------EKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred -cccccCCccccccceeeEEEcCCCC--EEEEcCCCeEEE-eCCC-CCCC----------eECCcCCCCCcceEEEEEeC
Confidence 111111 123578899999775 445556776643 2221 1111 11100011123467777776
Q ss_pred CCCcEEEEEeCCCcEEEEeCC
Q 015484 370 NDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~ 390 (406)
++. .+++ +..|.|--|+-.
T Consensus 313 ~~~-~~~~-G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEK-GFVL-GQRGVLLRYVGS 331 (334)
T ss_pred CCc-eEEE-CCCceEEEecCC
Confidence 666 4554 567888777643
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.85 E-value=13 Score=34.46 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=84.8
Q ss_pred cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccc-cccC----CCee-EEEecCCCCcEEEEEeCCCcEEEE
Q 015484 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRV-KAHE----KEVN-YLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 214 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~----~~v~-~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
....+..+-..| +++.+..-+. ..+.++++...... ..+ .... ..|+ ++..-. |..-+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeee
Confidence 345677777888 4555544433 57888887654321 112 1111 1122 111112 33367888899988766
Q ss_pred -eCCCCCCC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 287 -DMRKMTVP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 287 -d~~~~~~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
|.|....| ++.++....++.-+.=.. .+.-+++-...|++.++.-... +.+++.. -...
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~-------------~~lL~~~--~~~~ 359 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSE-------------KLLLFER--AYQA 359 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccC-------------cceehhh--hhcC
Confidence 66654432 111222222333222122 2234677777888777654431 1222221 1224
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.-+++||.+.+ +++ -..|.++++.+++..
T Consensus 360 ~~~~~~Sp~~~~-Ll~-e~~gki~~~~l~Nr~ 389 (733)
T COG4590 360 PQLVAMSPNQAY-LLS-EDQGKIRLAQLENRN 389 (733)
T ss_pred cceeeeCcccch-hee-ecCCceEEEEecCCC
Confidence 667899999986 444 346889999998764
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=82.28 E-value=35 Score=30.16 Aligned_cols=177 Identities=11% Similarity=0.138 Sum_probs=86.6
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC-----CEEEEEecCCcEEEEECCCCcccccccc--------
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE-----NLFGSAGDDCQLMIWDLRTNQTQQRVKA-------- 256 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------- 256 (406)
.|.+||+.+.+..+.+..-.......+.++++.+....+ ..+++=...+.|.++|+.+++..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 566667766543332222111122356788888876332 2333444556899999998765433211
Q ss_pred -----------cCCCeeEEEecC---CCCcEEEEEeCCCcEEEEeC-----CCCCC--------CcEEecCCCCCeEEEE
Q 015484 257 -----------HEKEVNYLSFNP---YNEWVLATASSDTTVALFDM-----RKMTV--------PLHILSSHTEEVFQVE 309 (406)
Q Consensus 257 -----------~~~~v~~i~~~~---~~~~~l~~~~~dg~i~vwd~-----~~~~~--------~~~~~~~h~~~v~~i~ 309 (406)
....+..++.+| +++ .|.-+.-.+ -++|-+ ++... .+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 112255566654 444 333333222 122222 22111 1122211124567788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC--CCCcEEEEE
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK--NDPWVISSV 378 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~~l~s~ 378 (406)
++++|. ++++--..+.|..|+....-... ....+..-...-..+.++.+.+ +|. +.+.+
T Consensus 193 ~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~--------~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 193 IDPNGN-LYFTDVEQNAIGCWDPDGPYTPE--------NFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp EETTTE-EEEEECCCTEEEEEETTTSB-GC--------CEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred ECCCCc-EEEecCCCCeEEEEeCCCCcCcc--------chheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 889885 77788889999999987522111 1123332222245778899998 776 44443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.21 E-value=5.3 Score=39.07 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=41.5
Q ss_pred CeEEEecCCCeEEEEeCCCcc-CCceeee-----------eeee--------eccCccEEEEEeeC---CCCCEEEEEec
Q 015484 180 GYLVSGSHDNKICLWDVSALA-QDKVIDA-----------MHVY--------EAHESVVEDVSWHL---KNENLFGSAGD 236 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-----------~~~~--------~~~~~~i~~i~~~p---~~~~~l~~~~~ 236 (406)
..++.+..||.+......... ....+.. +..+ ......+..++.++ .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 378888899998888776511 1011100 0000 01123344455543 25788899999
Q ss_pred CCcEEEEECCCCccccc
Q 015484 237 DCQLMIWDLRTNQTQQR 253 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~ 253 (406)
|+.+|+||+.+++++..
T Consensus 239 D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLAT 255 (547)
T ss_dssp TSEEEEEETTTTCEEEE
T ss_pred CCeEEEEECCCCeEEEE
Confidence 99999999999988443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.80 E-value=27 Score=28.95 Aligned_cols=130 Identities=14% Similarity=0.252 Sum_probs=68.3
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE 212 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 212 (406)
-.-.+|.-.++|..+. +....+. ..+..++++- ++. .|+.++...++..-|..+-.....+. .+..
T Consensus 106 LTw~egvaf~~d~~t~--------~~lg~~~-y~GeGWgLt~--d~~-~LimsdGsatL~frdP~tfa~~~~v~--VT~~ 171 (262)
T COG3823 106 LTWKEGVAFKYDADTL--------EELGRFS-YEGEGWGLTS--DDK-NLIMSDGSATLQFRDPKTFAELDTVQ--VTDD 171 (262)
T ss_pred EEeccceeEEEChHHh--------hhhcccc-cCCcceeeec--CCc-ceEeeCCceEEEecCHHHhhhcceEE--EEEC
Confidence 3345777788887762 2222221 2234455543 455 45555555667776766544333221 1111
Q ss_pred c-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc------------cccCCCeeEEEecCCCCcEEEEEe
Q 015484 213 A-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------------KAHEKEVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 213 ~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~v~~i~~~~~~~~~l~~~~ 278 (406)
+ .-..++.+.|- ++.+.|-.-.+..|...|..+|+.+..+ ..+..-.+.|++.|++..++++|-
T Consensus 172 g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 172 GVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred Ceecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 1 11234555554 3555555544455555566666543322 224456788999998875777663
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=43 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCCEEEEEecCC-----------cEEEEECCCCc
Q 015484 227 NENLFGSAGDDC-----------QLMIWDLRTNQ 249 (406)
Q Consensus 227 ~~~~l~~~~~dg-----------~i~i~d~~~~~ 249 (406)
++.+++.|+... .+..||..+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 567777777532 47788887654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=81.44 E-value=38 Score=29.97 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.....++.+++|. ++.+--..+.|..|+..+.
T Consensus 186 ~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 186 SQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp -SECEEEEETTTE-EEEEECCCTEEEEEETTTS
T ss_pred CCCceEEECCCCc-EEEecCCCCeEEEEeCCCC
Confidence 3456788889888 7888888999999999873
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.44 E-value=70 Score=33.07 Aligned_cols=147 Identities=13% Similarity=0.053 Sum_probs=77.4
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC--CCC---EEEEEecCCcEEEEEC-CCCcccccc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK--NEN---LFGSAGDDCQLMIWDL-RTNQTQQRV 254 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~---~l~~~~~dg~i~i~d~-~~~~~~~~~ 254 (406)
.++.++.++.+...++....... ..-......|.|+.++|. +++ +++.|..+..+.+.-. .....+...
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e-----~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~ 575 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLRE-----VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE 575 (1096)
T ss_pred EEEEecCccEEEEEEeeccceee-----eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence 66677677777777776643110 111123567899988874 344 7888876665554332 222221111
Q ss_pred -ccc---CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 255 -KAH---EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 255 -~~~---~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
... ...|.-..+-.+.. +|.++..||.+.-|-+....-.. +.......++.=-.|+..+++.+.+++ |.-.
T Consensus 576 ~l~~~~iPRSIl~~~~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~ 653 (1096)
T KOG1897|consen 576 QLSGEIIPRSILLTTFEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPT 653 (1096)
T ss_pred ccCCCccchheeeEEeeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCE
Confidence 111 12232333433344 89999999988766554332111 111223445555566666655444444 6666
Q ss_pred EEEeCCC
Q 015484 328 MVWDLNR 334 (406)
Q Consensus 328 ~iwd~~~ 334 (406)
.+|.-+.
T Consensus 654 viY~~n~ 660 (1096)
T KOG1897|consen 654 VIYSSNG 660 (1096)
T ss_pred EEEecCC
Confidence 6666543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=81.26 E-value=41 Score=30.25 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=33.7
Q ss_pred CCCEEEEEec-----CCcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCC
Q 015484 227 NENLFGSAGD-----DCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~ 291 (406)
++.+++.|+. ...+..||+.+.+-.. .+.... .....+..-.+. +.+.|+.++ .+.+||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCE-EEEEcCCCCccccceEEEecCCC
Confidence 4677777774 2358888988765322 121111 111121222344 777777654 3568888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.86 E-value=37 Score=29.49 Aligned_cols=200 Identities=8% Similarity=0.036 Sum_probs=103.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.-..++-.++|. .-+++...|.|--.|..+++.. ..--+....-..|..-|+++..| +-+.. .|.-.|-++
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~------~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt 133 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVE------TYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKT 133 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCceE------EEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcc
Confidence 345677778777 7777777777777777776431 11112334455667777544444 32222 455556555
Q ss_pred Ccccc---cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCCCCEEEEEeC
Q 015484 248 NQTQQ---RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 248 ~~~~~---~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
.+... ..+..........|.+.|. +-+++.. |.---.|... ..+..+... ...-+.|+-.|+|+ +-++.-.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPAR--NVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCcc-EEEeecc-ccceecCccc--CceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 44311 1133355677889999998 7777652 2111111111 112333222 23467788899997 4555445
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..|-..|...... +.+-...+....-..+--+|.|+ +-+|....+.++-+|..+..+
T Consensus 209 gnaiaridp~~~~a------------ev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 209 GNAIARIDPFAGHA------------EVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ccceEEcccccCCc------------ceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccc
Confidence 55666656544221 11111111111223333455555 455555556666666655543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.71 E-value=53 Score=31.18 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=36.5
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccc----c-ccCCCeeEEEecCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRV----K-AHEKEVNYLSFNPYN 270 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~-~~~~~v~~i~~~~~~ 270 (406)
-...+.|+|.| ++++|++--..|.|++++..++.. +..+ . ........|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34578899999 567776655469999998655432 1111 1 135678899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 406 | ||||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-123 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-122 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-122 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-121 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-119 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-116 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-08 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 7e-13 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 7e-08 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-11 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-11 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-10 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-10 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-09 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 7e-09 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-08 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-08 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-08 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-07 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 5e-07 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-06 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 6e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 9e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-06 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 4e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 5e-06 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-05 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 4e-04 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 6e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-04 |
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-160
Identities = 216/415 (52%), Positives = 290/415 (69%), Gaps = 19/415 (4%)
Query: 1 MAAEEQDASLDQ--VEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPT 58
AAE D ++++ + EE+ +WKKNTPFLYDL+++H LEWPSLT W+P +
Sbjct: 7 NAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQ--DGKD 64
Query: 59 FAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGG--------KNENPVIPKVEIAQ 110
++VH+ +LGTHTS++ N L+IA LP++D++ + V K+EI
Sbjct: 65 YSVHRLILGTHTSDE-QNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEI 123
Query: 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKE 168
KI +GEVNRAR MPQ ++ TKT S +V VFD K K + C PDLRL+GH KE
Sbjct: 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 183
Query: 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKN 227
GYGLSW+P GYL+S S D+ ICLWD++A ++ +VIDA +++ H +VVEDV+WHL +
Sbjct: 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243
Query: 228 ENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA 284
E+LFGS DD +LMIWD R N T V AH EVN LSFNPY+E++LAT S+D TVA
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
L+D+R + + LH SH +E+FQV+W P++ET+LASS DRRL VWDL++IG+EQ DA
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
EDGPPELLF HGGH AKISDFSWN N+PW+I SV++DN +QVWQM +++Y D++
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 418
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-39
Identities = 41/253 (16%), Positives = 100/253 (39%), Gaps = 27/253 (10%)
Query: 148 QAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID- 206
+ + + R H + ++ ++ L SG ++ +I +WD++ +
Sbjct: 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154
Query: 207 --AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA------HE 258
+ V ++W+ ++F SAG IWDL+ + + +
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214
Query: 259 KEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNH 314
++++ + ++P N +ATA+ +D ++ ++D+R PL L+ H + + ++W
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374
E +L SS D +++W+ ++ + + P +
Sbjct: 275 EHLLLSSGRDNTVLLWNPES-AEQLSQFP-------------ARGNWCFKTKFAPEAPDL 320
Query: 375 ISSVADDNTVQVW 387
+ + DN ++V
Sbjct: 321 FACASFDNKIEVQ 333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 34/250 (13%)
Query: 157 DPDLRLKGHDKEG--YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH 214
D + + + L WS + + + L+ + I++M + H
Sbjct: 56 DSEKPIASLQVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANN--AINSMARFSNH 112
Query: 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ---------TQQRVKAHEKEVNYLS 265
S V+ V ++ K +N+ S G++ ++ IWD+ T + + EV L+
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172
Query: 266 FNPYNEWVLATASSDTTVALFDMRK----MTVPLH-ILSSHTEEVFQVEWDPNHETVLAS 320
+N V A+A S +++D++ + + S +++ VEW P + T +A+
Sbjct: 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232
Query: 321 SADDRR---LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377
+ +++WDL + L + GH+ I W D ++ S
Sbjct: 233 ATGSDNDPSILIWDL------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 378 VADDNTVQVW 387
DNTV +W
Sbjct: 281 SGRDNTVLLW 290
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 49/290 (16%), Positives = 109/290 (37%), Gaps = 27/290 (9%)
Query: 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDL-RLKGHDKEGYGLSWSPFKEGYLV 183
++ N++ + ++ E++++D K E + + E L+W+
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182
Query: 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA---GDDCQL 240
S N +WD+ A + + + + V WH KN +A +D +
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242
Query: 241 MIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL 298
+IWDLR T + + H+K + L + +E +L ++ D TV L++ L
Sbjct: 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-QLSQF 301
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL----NRIGDEQLELDAEDGPPELLFS 354
+ F+ ++ P + A ++ D ++ V L N + +++ E ++ + +
Sbjct: 302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNN 361
Query: 355 HGGHKAKISDFSWNKNDP-W---------------VISSVADDNTVQVWQ 388
++K ++ P W ++ D V +
Sbjct: 362 VSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 31/240 (12%)
Query: 164 GHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS 222
HDK +S + G + S D+ + LW + A +K I ++ +S D+
Sbjct: 21 SHDKIPLLVSGTV--SGTVDANFSTDSSLELWSLLAADSEKPIASLQ----VDSKFNDLD 74
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATAS 278
W N + A D+ L ++ R H V + FN + VLA+
Sbjct: 75 WS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG 133
Query: 279 SDTTVALFDMRKMT--------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
++ + ++DM K T + S +EV + W+ + V AS+ +W
Sbjct: 134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI---SSVADDNTVQVW 387
DL + E + L + G K ++S W+ + + + +D ++ +W
Sbjct: 194 DL-KAKKEVIHLSYTS-------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 35/208 (16%), Positives = 83/208 (39%), Gaps = 20/208 (9%)
Query: 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
G+ + + L + S A +H+ + VS + + + D L +W
Sbjct: 1 GAMGSMVKLAEFSRTA--------TFAWSHDKIPLLVSGT-VSGTVDANFSTDSSLELWS 51
Query: 245 LRTNQTQQRVKAHEKE--VNYLSFNPYNEWVLATASSDTTVALFDMRK---MTVPLHILS 299
L +++ + + + + N L ++ N+ +A A + ++ L+ + + S
Sbjct: 52 LLAADSEKPIASLQVDSKFNDLDWSHNNKI-IAGALDNGSLELYSTNEANNAINSMARFS 110
Query: 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359
+H+ V V+++ + VLAS ++ + +WD+N+ + P
Sbjct: 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK-----CTESPSNYTPLTPGQSMSSV 165
Query: 360 AKISDFSWNKNDPWVISSVADDNTVQVW 387
++ +WN++ V +S N +W
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIW 193
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
+ + V L + + SH + V + TV A+ + D L +W L
Sbjct: 1 GAMGSMVKLAEFSR---TATFAWSHDKIPLLVSGTVS-GTVDANFSTDSSLELWSLL--- 53
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+ + S +K +D W+ N+ + + D+ +++++
Sbjct: 54 --------AADSEKPIASLQVD-SKFNDLDWSHNNKIIAGA-LDNGSLELYS 95
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 14/237 (5%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS-------ALAQDKVIDAMHVYEAH 214
+ H L P + Y++SG D I L+D+ + + H
Sbjct: 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98
Query: 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY--NEW 272
VE V W+ + +F S+ D L +WD T Q V E+ V +P
Sbjct: 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTKHC 157
Query: 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
++A + V L D++ + HIL H +E+ V W P ++ +LA+++ D R+ +WD+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 333 NRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
R + LD +G H K++ + + +++ DN +++W
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV-GTDNRMRLW 272
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 45/268 (16%), Positives = 88/268 (32%), Gaps = 51/268 (19%)
Query: 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV 204
+ H + W P G S S D + +WD + L V
Sbjct: 78 RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 205 IDAMHVYEAHESVVEDVSWHL--KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262
+ E V L ++ + DL++ ++ H +E+
Sbjct: 138 FN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190
Query: 263 YLSFNPYNEWVLATASSDTTVALFDMR---------------KMTVPLHILSSHTEEVFQ 307
+S++P +++LATAS+D+ V L+D+R K ++H +V
Sbjct: 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250
Query: 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367
+ + + L + D R+ +W ++ +G E + G S
Sbjct: 251 LCFTSDGLH-LLTVGTDNRMRLW------------NSSNG--ENTLVNYGKVCNNSKKGL 295
Query: 368 NKNDPWVIS--------SVADDNTVQVW 387
+ +S V +T+ V+
Sbjct: 296 K----FTVSCGCSSEFVFVPYGSTIAVY 319
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 37/249 (14%), Positives = 74/249 (29%), Gaps = 44/249 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS----------ALAQDKVIDAMHVY 211
L+GH +E +SWSP + L + S D+++ LWDV K
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE--------VNY 263
AH V + + + + G D ++ +W+ +
Sbjct: 242 TAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSA 322
+ +T+A++ + + + +L H + V + N + L S +
Sbjct: 301 CGCSSE----FVFVPYGSTIAVYTVY--SGEQITMLKGHYKTVDCCVFQSNFQE-LYSGS 353
Query: 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382
D ++ W + E + + N SS ++
Sbjct: 354 RDCNILAWVPSLY--EPVP---------------DDDETTTKSQLNPAFEDAWSSSDEEG 396
Query: 383 TVQVWQMTD 391
W
Sbjct: 397 GTSAWSHPQ 405
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 37/221 (16%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
L ++ + + L +D+ V H + + S G D ++
Sbjct: 16 LRLRRAESTRRVLGL-ELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIV 69
Query: 242 IWDLRTNQTQQR-------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288
++DL + Q H V + + P++ + ++S D T+ ++D
Sbjct: 70 LYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT 129
Query: 289 RKMTVPLHILSSHTEEVFQVEW--DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346
+ + + E V+ ++A ++ + DL + G L
Sbjct: 130 NTLQ-TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-KSGSCSHILQ--- 183
Query: 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
GH+ +I SW+ +++++ + D+ V++W
Sbjct: 184 ----------GHRQEILAVSWSPRYDYILATASADSRVKLW 214
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 12/90 (13%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
LKGH K + L SGS D I W S +
Sbjct: 329 MLKGHYKTVDCCVFQS--NFQELYSGSRDCNILAWVPSLYEPV---------PDDDETTT 377
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249
+ E+ + S+ ++ W +
Sbjct: 378 KSQLNPAFEDAWSSSDEEGGTSAWSHPQFE 407
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 3e-30
Identities = 40/240 (16%), Positives = 85/240 (35%), Gaps = 12/240 (5%)
Query: 152 QQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211
+ ++ G G+ ++ F L S L D S VI
Sbjct: 104 DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----SVIQVFAKT 159
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
++ + V + + + +L++ L ++ + K H+ +V + FNP +
Sbjct: 160 DSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLDGHEIF-KEKLHKAKVTHAEFNPRCD 217
Query: 272 WVLATASSDTTVALFDMRKMTV--PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
W++AT+S D TV L+D+R + H + V ++P T L ++ + V
Sbjct: 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
+ + + L + D + D ++ + D T+ ++
Sbjct: 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLN--DKRTIDIY 335
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 20/232 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
D+ L W P + GS I LWD + + + +
Sbjct: 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY----DVQNKTSFIQGMGPGDAITGM 124
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFNPYNEWVLATASS 279
++ N N + + D + Q + + + + + + +LAT S
Sbjct: 125 KFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDS 183
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
+ L + + H +V E++P + ++A+S+ D + +WDL I D
Sbjct: 184 TGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-- 239
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ H+ ++ +N D + + N ++V+ D
Sbjct: 240 --------KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 26/242 (10%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ D + S L +G ++ L + + + H++ V
Sbjct: 158 KTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDG-------HEIFKEKLHKAKVTH 209
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
++ + + L ++ D + +WDLR + HEK VN FNP + L T
Sbjct: 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT 269
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEE------VFQVEWDPNHETVLASSADDRRLMVWD 331
+ ++ + P + H + W P ++ ++A D +L++ D
Sbjct: 270 DQRNEIRVYSSYDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND 328
Query: 332 LNRIGDEQLEL-DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
I ++ DA G IS ++ + S + +W
Sbjct: 329 KRTI-----DIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS--GMGFNILIWNRE 381
Query: 391 DS 392
D+
Sbjct: 382 DT 383
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 25/203 (12%)
Query: 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247
+ + + + + V + WH + +++WD
Sbjct: 52 LQEPFIRSLKSYKL------HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV 105
Query: 248 NQ--TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEE 304
+ + + + FN +N L +S L D + S
Sbjct: 106 QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYW 165
Query: 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364
V+ + + LA+ RL++ L+ +F HKAK++
Sbjct: 166 YCCVDVSVSRQM-LATGDSTGRLLLLGLDG---------------HEIFKEKLHKAKVTH 209
Query: 365 FSWNKNDPWVISSVADDNTVQVW 387
+N W++++ + D TV++W
Sbjct: 210 AEFNPRCDWLMATSSVDATVKLW 232
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 14/179 (7%), Positives = 50/179 (27%), Gaps = 15/179 (8%)
Query: 214 HESVVEDVSWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272
S++ + L + I L++ + + ++ V L ++P +
Sbjct: 28 QTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPT 87
Query: 273 VLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
+A S + L+D + + ++++ + L S+ + D
Sbjct: 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
+ ++ + ++++ + + +
Sbjct: 148 FSG------------SVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGLD 193
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-29
Identities = 56/251 (22%), Positives = 90/251 (35%), Gaps = 37/251 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH+ + + W+ K G L S S+D K+ +W ++ V+ H + V
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI----AVHAVHSASVNS 106
Query: 221 VSWHLKNE-NLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWV---- 273
V W L A D ++ + + + N T + AH VN S+ P
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 274 --------LATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHE--TVLAS 320
T +D V ++ V L H++ V V W P + LAS
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPE-LLFSHGGHKAKISDFSWNKNDPWVISSVA 379
+ DR ++W D E GP + L + SW+ + + S
Sbjct: 227 VSQDRTCIIWT----------QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-G 275
Query: 380 DDNTVQVWQMT 390
DN V +W+
Sbjct: 276 GDNKVTLWKEN 286
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 36/246 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H++ + + G L + S D I +++V + HE V
Sbjct: 7 ANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWR 60
Query: 221 VSW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE-WVLAT 276
V W H K + S D +++IW + Q H VN + + P+ +L
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120
Query: 277 ASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETV------------LASSAD 323
ASSD V++ + + T I+ +H V W P +
Sbjct: 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADD 381
D + +W N DA+ E GH + D +S ++SV+ D
Sbjct: 181 DNLVKIWKYNS--------DAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 382 NTVQVW 387
T +W
Sbjct: 231 RTCIIW 236
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-21
Identities = 44/250 (17%), Positives = 78/250 (31%), Gaps = 56/250 (22%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H + W+P + G L+ S D K+ + + I + +AH V
Sbjct: 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHAIGVNS 152
Query: 221 VSWH------------LKNENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEKEVNYL 264
SW K F + G D + IW ++ + ++ H V +
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 265 SFNPYNEW--VLATASSDTTVALFDMRKMTVP----LHILSSHTEEVFQVEWDPNHETVL 318
+++P LA+ S D T ++ P L + +++ W + VL
Sbjct: 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVL 271
Query: 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS-HGGHKAKISDFSWNKNDPWVISS 377
A S D ++ +W N +G E H G S
Sbjct: 272 ALSGGDNKVTLWKEN-----------LEGKWEPAGEVHQGG----------------GGS 304
Query: 378 VADDNTVQVW 387
T + +
Sbjct: 305 GGGGATSKEF 314
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 21/103 (20%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
L+ + + SWS G L DNK+ LW + E
Sbjct: 250 LKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKEN-------------LEGKWEPA 294
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV 261
+V ++ GS G +D + + +
Sbjct: 295 GEV-----HQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDE 332
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-29
Identities = 54/251 (21%), Positives = 90/251 (35%), Gaps = 37/251 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH+ + + W+ K G L S S+D K+ +W ++ V+ H + V
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI----AVHAVHSASVNS 104
Query: 221 VSWHLKNE-NLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWV---- 273
V W + A D ++ + + + N T + AH VN S+ P
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 274 --------LATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHE--TVLAS 320
T +D V ++ V L H++ V V W P + +AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPE-LLFSHGGHKAKISDFSWNKNDPWVISSVA 379
+ DR ++W D E GP + L + SW+ + + S
Sbjct: 225 VSQDRTCIIWT----------QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-G 273
Query: 380 DDNTVQVWQMT 390
DN V +W+
Sbjct: 274 GDNKVTLWKEN 284
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-22
Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 36/246 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H++ + + G + + S D I +++V + HE V
Sbjct: 5 ANAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWR 58
Query: 221 VSW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE-WVLAT 276
V W H K + S D ++MIW + Q H VN + + P+ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV 118
Query: 277 ASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETV------------LASSAD 323
ASSD V++ + + T I+ +H V W P +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADD 381
D + +W N DA+ E GH + D +S ++SV+ D
Sbjct: 179 DNLVKIWKYNS--------DAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 382 NTVQVW 387
T +W
Sbjct: 229 RTCIIW 234
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 8e-20
Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 28/201 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H + W+P + G L+ S D K+ + + I + +AH V
Sbjct: 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI----IIDAHAIGVNS 150
Query: 221 VSWH------------LKNENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEKEVNYL 264
SW K F + G D + IW ++ + ++ H V +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 265 SFNPYNEW--VLATASSDTTVALFDMRKMTVP----LHILSSHTEEVFQVEWDPNHETVL 318
+++P +A+ S D T ++ P L + +++ W + VL
Sbjct: 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVL 269
Query: 319 ASSADDRRLMVWDLNRIGDEQ 339
A S D ++ +W N G +
Sbjct: 270 ALSGGDNKVTLWKENLEGKWE 290
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 22/159 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG------------YLVSGSHDNKICLWDVSALAQDKVIDAMH 209
+ H SW+P V+G DN + +W ++ AQ V+
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL--ES 198
Query: 210 VYEAHESVVEDVSWH--LKNENLFGSAGDDCQLMIWDLRTNQ-----TQQRVKAHEKEVN 262
E H V DV+W + + S D +IW Q T + + +
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258
Query: 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301
S++ + VLA + D V L+ H
Sbjct: 259 RASWSL-SGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-28
Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 21/234 (8%)
Query: 164 GHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS 222
E + Y + + I ++ + +
Sbjct: 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVHSAK----SDVEYSSGV 177
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSD 280
H K+ L D L +++L + E ++ + F W++ D
Sbjct: 178 LH-KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--ECD 234
Query: 281 TTVALFDMRK----MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
TV FD+RK + P + + + D + + ++A S + L ++ ++
Sbjct: 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
E A +D D + + + +++ + +T
Sbjct: 295 KNW------TKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVALT 342
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 88.7 bits (219), Expect = 9e-20
Identities = 25/244 (10%), Positives = 72/244 (29%), Gaps = 21/244 (8%)
Query: 155 DCDPDLRLKGHDKEGYGLSW---SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211
D + + G S L+ N+I + D + I+
Sbjct: 67 DSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS-- 124
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-EKEVNYLSFNPYN 270
++ + N F A + + + A + E + + +
Sbjct: 125 --ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182
Query: 271 EWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
LA S D + ++++ ++ +V++ N ++ D+ ++
Sbjct: 183 LL-LALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVC 239
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+DL + ++ K + + + +I+ + N++ +++
Sbjct: 240 FDLRK---------DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290
Query: 390 TDSI 393
Sbjct: 291 DKKT 294
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 4e-06
Identities = 18/171 (10%), Positives = 48/171 (28%), Gaps = 22/171 (12%)
Query: 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-----EVNYLSFNPYNEWVLATASSDT 281
++ + +D L L+ ++T + +S P N L
Sbjct: 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCN--RLLLLYPGN 104
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV-LASSADDRRLMVWDLNRIGDEQL 340
+ + D + V I E+ + T + + +
Sbjct: 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY-------- 156
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ + + + S +K D +++ + D + V+ ++
Sbjct: 157 -----EDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS 201
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 31/240 (12%)
Query: 161 RLKGHDKEGY-GLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDA--MHVYEAHES 216
+ GH + +SP K YL SG K+ +W + + ++ ++
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117
Query: 217 VVEDVSW-----HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
+ D+SW L G D + + + V H + +N
Sbjct: 118 PISDISWDFEGRRL----CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 173
Query: 272 WVLATASSDTTVALFDM--RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
T D +V + K + V VE+ P+ + + DR++
Sbjct: 174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
+ D + G E L + + F+ + D ++V D T++VW
Sbjct: 234 F------------DGKSG--EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW 279
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 42/232 (18%)
Query: 162 LKGHDKEGYGLSWSPFKE--GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
++ + G ++ + D I +WDV+ + + + +
Sbjct: 245 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW----TLDKQQLGNQ 300
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
V S D L ++L ++ + + H K + L+ NP L + S
Sbjct: 301 QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSY 355
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D + + M H+ + ++ +S + D L V
Sbjct: 356 DGRIMEWSSSSM------HQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNG-------- 399
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ P++ ++ + + +D+ + + Q
Sbjct: 400 ITKHEFGSQPKVASANNDGF---------------TAVLTNDDDLLILQSFT 436
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 35/258 (13%), Positives = 71/258 (27%), Gaps = 33/258 (12%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG---YLVSGSHDNKICLWDV 196
V V+ E + + + +SW EG +V DN
Sbjct: 90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISW 147
Query: 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQR 253
+ + H + + GDD ++ + + + +
Sbjct: 148 DSGNSLGEV------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 201
Query: 254 VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313
V + F+P + + T SD ++ FD + L + E V + +
Sbjct: 202 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALS 260
Query: 314 HE--TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNK 369
A+ D + VW D ++ +
Sbjct: 261 WLDSQKFATVGADATIRVW------------DVTTSKCVQKWTLDKQQLGNQQVGVVATG 308
Query: 370 NDPWVISSVADDNTVQVW 387
N +I S++ D T+ +
Sbjct: 309 NG-RII-SLSLDGTLNFY 324
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 5e-18
Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 24/180 (13%)
Query: 164 GHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS 222
LS + L G+ L D+ + + +S
Sbjct: 446 NSPGSAVSLSQNY--VAVGLEEGNTIQVFKLSDLEVSFD--------LKTPLRAKPSYIS 495
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNP---------YNEW 272
+E + +++++DL++ + + ++N +S+ P E
Sbjct: 496 IS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554
Query: 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
++AT S DT + ++ +++ + L++H + V + W+ L SS D + W++
Sbjct: 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 612
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 6e-17
Identities = 31/241 (12%), Positives = 78/241 (32%), Gaps = 35/241 (14%)
Query: 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
+ + S + +G+ ++D+ + + K +
Sbjct: 399 GITKHEFGSQPKVASANN--DGFTAVLTNDDDLLILQSFTGDIIKSVR-----LNSPGSA 451
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+S + L + DL + + +Y+S +P +E +A
Sbjct: 452 VSLSQNYVAVGL-EEGNTIQVFKLSDLEV--SFDLKTPLRAKPSYISISP-SETYIAAGD 507
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH---------ETVLASSADDRRLMV 329
+ L+D++ V + T ++ + W P E ++A+ + D + +
Sbjct: 508 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ + R P +++ + HK +++ W V S D ++ W +
Sbjct: 568 YSVKR-------------PMKIIKALNAHKDGVNNLLWETPSTLV--SSGADACIKRWNV 612
Query: 390 T 390
Sbjct: 613 V 613
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 24/255 (9%), Positives = 70/255 (27%), Gaps = 56/255 (21%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD----------------VSALA--- 200
L + G ++S S D + ++ ++AL
Sbjct: 290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
Query: 201 -----QDKVI---DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ 252
D I + +++ H +++ + + S D L + + ++
Sbjct: 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGITKHE--- 404
Query: 253 RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312
+ S N + A ++D + + + + + + +
Sbjct: 405 ----FGSQPKVASANN--DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458
Query: 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372
L + + DL + + +AK S S + ++
Sbjct: 459 VAVG-LEEGNTIQVFKLSDLE-VSFDLKT---------------PLRAKPSYISISPSET 501
Query: 373 WVISSVADDNTVQVW 387
++ + + ++
Sbjct: 502 YIAAG-DVMGKILLY 515
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 28/188 (14%)
Query: 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--QRVKAHE-KEVNYLSFNPY 269
+ +S+ + G + D ++ + H V + F+P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75
Query: 270 N--EWVLATASSDTTVALFD-------MRKMTVPLHILSSHTEEVFQVEWDPNHET-VLA 319
++ L + V ++ + + WD +
Sbjct: 76 KGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 134
Query: 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379
D + + G+ E+ GH +I+ ++ P +V
Sbjct: 135 GEGRDNFGVFISWDS-GNSLGEVS-------------GHSQRINACHLKQSRPMRSMTVG 180
Query: 380 DDNTVQVW 387
DD +V +
Sbjct: 181 DDGSVVFY 188
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-27
Identities = 56/251 (22%), Positives = 90/251 (35%), Gaps = 37/251 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH+ + + W+ K G L S S+D K+ +W ++ V+ H + V
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI----AVHAVHSASVNS 104
Query: 221 VSWHLKNE-NLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWV---- 273
V W L A D ++ + + + N T + AH VN S+ P
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 274 --------LATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHE--TVLAS 320
T +D V ++ V L H++ V V W P + LAS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPE-LLFSHGGHKAKISDFSWNKNDPWVISSVA 379
+ DR ++W D E GP + L + SW+ + + S
Sbjct: 225 VSQDRTCIIWT----------QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-G 273
Query: 380 DDNTVQVWQMT 390
DN V +W+
Sbjct: 274 GDNKVTLWKEN 284
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 2e-20
Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 36/246 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H++ + + G L + S D I +++V + HE V
Sbjct: 5 ANAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWR 58
Query: 221 VSW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE-WVLAT 276
V W H K + S D +++IW + Q H VN + + P+ +L
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 277 ASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETV------------LASSAD 323
ASSD V++ + + T I+ +H V W P +
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADD 381
D + +W N DA+ E GH + D +S ++SV+ D
Sbjct: 179 DNLVKIWKYNS--------DAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 382 NTVQVW 387
T +W
Sbjct: 229 RTCIIW 234
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 36/248 (14%), Positives = 65/248 (26%), Gaps = 45/248 (18%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
L+ + + SWS G L DNK+ LW + + E
Sbjct: 248 LKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKENLEGK------------WEPAG 293
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
E GS G +D + + N+ +
Sbjct: 294 EVHQGG------GGSGGGGATSKEFDGPCQNEIDLLFSE-----------CNDEIDNAKL 336
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
R+ T T + + S +RL + +
Sbjct: 337 IM------KERRFTASYTFAKFSTGSMLLTKDIVGK-----SGVSIKRLPTELQRKFLFD 385
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDD 398
+ LD E + +IS+ S + + +W+++ SI D
Sbjct: 386 DVYLDKEIEKVTIEARKSNPYPQISESSLLF-KDALDYMEKTSSDYNLWKLS-SILFDPV 443
Query: 399 DFLATTDD 406
+ TD+
Sbjct: 444 SYPYKTDN 451
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-27
Identities = 38/232 (16%), Positives = 89/232 (38%), Gaps = 25/232 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
G+ + P E ++++ + ++ +W+ + + + E+ V
Sbjct: 9 FSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVE------VRSIQVTETPVRAG 61
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ +N DD ++ +++ T + +AH + ++ +P + + + S D
Sbjct: 62 KFI-ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDL 119
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
TV L++ H V V ++P + AS DR + VW L +
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFT 178
Query: 342 LDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVWQMTD 391
L G + ++ D+ + P++I++ +DD T+++W
Sbjct: 179 LTT------------GQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQT 217
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 24/230 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
G ++ + + P + Y+++ S D I +WD + + E H S V
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------VATLEGHMSNVSF 233
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+H + S +D L IW+ T + ++ + + ++ +P + D
Sbjct: 234 AVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
+ + P L + V+ + AS + + +
Sbjct: 293 NGFTVLSL-GNDEPTLSLDPVGKLVWSG-----GKNAAASDIFTAVIRGNEEVEQDEPLS 346
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
E G + + N +V D V +
Sbjct: 347 LQTKEL---------GSVDVFPQSLAHSPNGRFVTVV-GDGEYVIYTALA 386
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV 308
++ V + F+P W + T V +++ + + V
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAG 61
Query: 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368
++ + +DD R+ V++ N G++ ++ + H I + +
Sbjct: 62 KFIARKNW-IIVGSDDFRIRVFNYNT-GEKVVDFE-------------AHPDYIRSIAVH 106
Query: 369 KNDPWVISSVADDNTVQVW 387
P+V+S +DD TV++W
Sbjct: 107 PTKPYVLSG-SDDLTVKLW 124
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 29/253 (11%)
Query: 162 LKGHDKE------GYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH 214
+KGH + GL +V+GS D + +WD +D + M +
Sbjct: 107 VKGHKEIINAIDGIGGLGIGE--GAPEIVTGSRDGTVKVWDPRQ--KDDPVANMEPVQGE 162
Query: 215 E-----SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP- 268
+V +++ + E + + D+ + ++DLR + + V L F+
Sbjct: 163 NKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNMA-LRWETNIKNGVCSLEFDRK 220
Query: 269 -YNEWVLATASSDTTVALFDMR----KMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
+ L S + +FDMR +H V+QV P + + ++
Sbjct: 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG 280
Query: 324 DRRLMVWDLNR-----IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378
L +W D + G LL + IS W+ + +
Sbjct: 281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCS 340
Query: 379 ADDNTVQVWQMTD 391
+ D TV+V +T
Sbjct: 341 SFDQTVRVLIVTK 353
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 36/258 (13%), Positives = 82/258 (31%), Gaps = 35/258 (13%)
Query: 160 LRLKGHDKEGYGLSWSPFK--EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217
LR K ++ + YL +G + +W++ A ++ + H+ +
Sbjct: 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEI 113
Query: 218 VEDVSWHLK-----NENLFGSAGDDCQLMIWDLRTNQTQQRV----KAHEKEVNY----- 263
+ + + D + +WD R + K +
Sbjct: 114 INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN--HETVLASS 321
++N E V+ + + LFD+R M L ++ V +E+D L ++
Sbjct: 174 NAYNQ-EERVVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISMNKLVAT 230
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
+ + + V+D+ + S HK+ + + + +
Sbjct: 231 SLEGKFHVFDMRTQHPTK---------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281
Query: 382 NTVQVWQMTDSIYRDDDD 399
+ +W+ I R D
Sbjct: 282 GGLHLWKYEYPIQRSKKD 299
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 9e-19
Identities = 34/207 (16%), Positives = 77/207 (37%), Gaps = 41/207 (19%)
Query: 162 LKGHDKEG-----YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216
++G +K +G +++ +E + +G + I L+D+ +A ++
Sbjct: 159 VQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL-------RWETNIKN 210
Query: 217 VVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVNYLSFNPY 269
V + + K + N + + + ++D+RT + KAH+ V + P
Sbjct: 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ 270
Query: 270 NEWVLATASSDTTVALFDMRKMTV------------------PLHILSSHTEEVFQVEWD 311
N + TA + L+ L ++ T+ + ++W
Sbjct: 271 NRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330
Query: 312 PNHETVLASSADDRRLMVWD---LNRI 335
P+ + S+ D+ + V LN+I
Sbjct: 331 PDKRGLCVCSSFDQTVRVLIVTKLNKI 357
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 40/249 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSH---DNKICLWDVSALAQDKVIDAMHVYEAHESV- 217
KG + + W P ++ G+ I L+++ Q + + E + +
Sbjct: 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI----QHGDLKLLREIEKAKPIK 69
Query: 218 -VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVN------YLSFNPY 269
+ L + + L IW+L + VK H++ +N L
Sbjct: 70 CGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG 128
Query: 270 NEWVLATASSDTTVALFDMR---KMTVPLHILSSHTEE-----VFQVEWDPNHETVLASS 321
+ T S D TV ++D R + + + F ++ E V+ +
Sbjct: 129 APE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAG 186
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
D+ + ++DL R + E + ++G L F + + + +
Sbjct: 187 YDNGDIKLFDL-RNMALRWETNIKNGVCSLEFDRKDISMNK------------LVATSLE 233
Query: 382 NTVQVWQMT 390
V+ M
Sbjct: 234 GKFHVFDMR 242
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 22/192 (11%), Positives = 67/192 (34%), Gaps = 21/192 (10%)
Query: 209 HVYEAHESVVEDVSWHLKNENL--FGSAG-DDCQLMIWDLRTNQTQQRVKAHEKE----V 261
H+ + V D W + G+ + +++++ + + + +
Sbjct: 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG 71
Query: 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-----T 316
+ + + + LAT + ++++ +P++ + H E + ++
Sbjct: 72 TFGATSL-QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP 130
Query: 317 VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN-DPWVI 375
+ + + D + VWD R D+ + E + F N + V+
Sbjct: 131 EIVTGSRDGTVKVWDP-RQKDDPVAN------MEPVQGENKRDCWTVAFGNAYNQEERVV 183
Query: 376 SSVADDNTVQVW 387
+ D+ ++++
Sbjct: 184 CAGYDNGDIKLF 195
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 18/228 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
H + SP G Y SG + +WD + V+D
Sbjct: 55 YTEHSHQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQTTHI----LKTTIPVFSGPVKD 108
Query: 221 VSWHLKNENL-FGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+SW +++ + G + ++ T + + + +N + F P + + + S
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D TVA+F+ HT+ V V ++P+ AS+ D +++++ G +
Sbjct: 169 DNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNG-VDGTKT 225
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ + H + +W+ + + S+ + D T+++W
Sbjct: 226 GVFEDDSLKNV------AHSGSVFGLTWSPDGTKIASA-SADKTIKIW 266
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 3e-22
Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 31/233 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L G + + + P + ++SGS DN + +++ H V V
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF------GEHTKFVHSV 196
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-------AHEKEVNYLSFNPYNEWVL 274
++ + +LF S G D +++++ + AH V L+++P +
Sbjct: 197 RYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-I 254
Query: 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
A+AS+D T+ ++++ + V I E Q+ + L S + + +
Sbjct: 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFV---- 309
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ E G + + GH I+ S + + + S+ + + W
Sbjct: 310 --------NPELGSIDQVRY--GHNKAITALSSSADGKTLFSA-DAEGHINSW 351
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 4e-22
Identities = 35/249 (14%), Positives = 80/249 (32%), Gaps = 26/249 (10%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSA 198
+ +++ K D L+ H +GL+WSP +G + S S D I +W+V+
Sbjct: 214 IVLYN-GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVAT 270
Query: 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258
L +K I + + + L S + + + Q H
Sbjct: 271 LKVEKTIP-----VGTRIEDQQLGIIWTKQALV-SISANGFINFVNPELGSIDQVRYGHN 324
Query: 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318
K + LS + + L +A ++ + +D+ H + ++ + L
Sbjct: 325 KAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--L 381
Query: 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378
+ + D L V G ++ + + + +++
Sbjct: 382 FTVSWDDHLKVVP-----------AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA- 429
Query: 379 ADDNTVQVW 387
+ ++
Sbjct: 430 -CYKHIAIY 437
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 8e-20
Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 31/232 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ GL+ S +G + + I ++ L + ++ V
Sbjct: 407 ANKLSSQPLGLAVSA--DGDIAVAACYKHIAIYSHGKLTEVP--------ISYN--SSCV 454
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ ++ G D ++ ++ L + + H E+ ++F+ N L
Sbjct: 455 ALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQS 512
Query: 281 TTVALFDM--RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
V + + + + HT +V V W P+ LA+ + D ++VW
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD-NVRLATGSLDNSVIVW-------- 563
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
+ + G H + N+ ++S+ D+ ++ W +
Sbjct: 564 ----NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA-GQDSNIKFWNVP 610
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 35/230 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
GH+K LS S +G L S + I WD+S ++V + H +++
Sbjct: 320 RYGHNKAITALSSSA--DGKTLFSADAEGHINSWDISTGISNRVF-----PDVHATMITG 372
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYNEWVLATA 277
+ K + + D L + + + L+ + + +A A
Sbjct: 373 IKTTSKGDLF--TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVA 428
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
+ +A++ K + S+ V + + +A D ++ V+ L
Sbjct: 429 ACYKHIAIYSHGK---LTEVPISYNSSC--VALSNDKQF-VAVGGQDSKVHVYKL----- 477
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
G H A+I+ +++ N +++++ V +
Sbjct: 478 --------SGASVSEVKTIVHPAEITSVAFSNNGAFLVAT-DQSRKVIPY 518
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 7e-16
Identities = 26/231 (11%), Positives = 67/231 (29%), Gaps = 32/231 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ L +P + +G+ + + ++ +Y H
Sbjct: 14 PRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT---------EIYTEHSHQTTV 64
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ S + IWD + + V +S++ ++ +A
Sbjct: 65 AKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR-IAAVG 122
Query: 279 S--DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
+ +F L+ + V++ P+ + S +DD + +++
Sbjct: 123 EGRERFGHVFLF-DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP--- 178
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
P + + G H + +N + S D T+ ++
Sbjct: 179 -----------PFKFKSTFGEHTKFVHSVRYNPDGSLFA-STGGDGTIVLY 217
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
++ H E +++S G +LV+ K+ + V A + + + + H + V
Sbjct: 485 VKTIVHPAEITSVAFSN--NGAFLVATDQSRKVIPYSV---ANNFELAHTNSWTFHTAKV 539
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLAT 276
VSW + + D +++W++ + AH + +
Sbjct: 540 ACVSWS-PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVS 597
Query: 277 ASSDTTVALFDM 288
A D+ + +++
Sbjct: 598 AGQDSNIKFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 23/178 (12%), Positives = 55/178 (30%), Gaps = 21/178 (11%)
Query: 214 HESVVEDVSWHLKNENL-FGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272
+ + + + + + + L + H + +P +
Sbjct: 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI---YTEHSHQTTVAKTSPSGYY 73
Query: 273 VLATASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD-DRRLMVW 330
A+ V ++D + + + V + WD + + A +R V+
Sbjct: 74 -CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+ G L G ++ + + P+ I S +DDNTV +++
Sbjct: 133 LFDT-GTSNGNLT-------------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 38/245 (15%), Positives = 85/245 (34%), Gaps = 33/245 (13%)
Query: 162 LKGHDKEG-YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L ++ + SP + YL++GS I +W++ + +V + Y+ S V
Sbjct: 58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQ 116
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----------------AHEKEVNYL 264
++ + N + F + D Q+++ + Q + VK +E V
Sbjct: 117 ITM-IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMR 175
Query: 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE--VFQVEWDPNHETVLASSA 322
+F + +L ++ + V +FD+R + L I+ + V + D L
Sbjct: 176 AFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSICIDEECCV-LILGT 233
Query: 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382
+ +WD+ R F + + + ++ +
Sbjct: 234 TRGIIDIWDI-RFNVLIR---------SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283
Query: 383 TVQVW 387
+ +W
Sbjct: 284 FLTIW 288
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 9e-18
Identities = 28/280 (10%), Positives = 82/280 (29%), Gaps = 60/280 (21%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
++ ++ ++ LV+ ++ +++ ++D+ L + ++I+ V +
Sbjct: 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN----SPRHGAVSSI 220
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK----EVNYLSFNPYNEWVLATA 277
+ + + IWD+R N + + V F N ++
Sbjct: 221 CID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG 279
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET--------------------- 316
SS T + +++ K + + E+ + P +
Sbjct: 280 SSKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338
Query: 317 ---VLASSADDRRLMVWDLNRI-----------------------GDEQLELDAEDGPPE 350
+L + ++++ LN + L +
Sbjct: 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398
Query: 351 LLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVWQ 388
+ H I+ P +++ + + ++Q
Sbjct: 399 SVDDSLYHHDIINSISTCEVDETPLLVAC-DNSGLIGIFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 28/194 (14%), Positives = 72/194 (37%), Gaps = 14/194 (7%)
Query: 207 AMHVYEAHESVVE------DVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEK 259
H E +E + L++ FG + +LR ++
Sbjct: 5 HHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPN 64
Query: 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS----SHTEEVFQVEWDPNHE 315
+ + +P L T S + +++++++ V S + V Q+ PN +
Sbjct: 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124
Query: 316 TVLASSADDRRLMVWDL--NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373
A S+ D +++V + + E L+ E L + G ++ + ++ +
Sbjct: 125 A-FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183
Query: 374 VISSVADDNTVQVW 387
++ ++ + + V ++
Sbjct: 184 LLVALTNLSRVIIF 197
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 41/255 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L+GH+ + ++W+ G L S S+D K+ +W ++ + H + H+S V
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE----ENGTWEKSHEHAGHDSSVNS 108
Query: 221 VSWHLKNE-NLFGSAGDDCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNP-------- 268
V W + + D + + + K AH N +S+ P
Sbjct: 109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168
Query: 269 --------YNEWVLATASSDTTVALFDMR--KMTVPLHILSSHTEEVFQVEWDPNHE--- 315
A+ D + L+ L +H++ V V W P+
Sbjct: 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228
Query: 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375
+ +AS + D R+ +W + DA H + SW+ +
Sbjct: 229 STIASCSQDGRVFIWTCD---------DASSNTWSPKLLH-KFNDVVWHVSWSITANILA 278
Query: 376 SSVADDNTVQVWQMT 390
S DN V +W+ +
Sbjct: 279 VS-GGDNKVTLWKES 292
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 41/256 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
H+ + + L + S D + ++DV Q + HE V V
Sbjct: 9 DTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI----ADLRGHEGPVWQV 63
Query: 222 SW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE-WVLATA 277
+W H N+ S D +++IW ++ H+ VN + + P++ +LA
Sbjct: 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 278 SSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDP----------------NHETVLA 319
SSD ++L I ++HT V W P N+ A
Sbjct: 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183
Query: 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV---IS 376
S D + +W EDG + H + D +W + I+
Sbjct: 184 SGGCDNLIKLWKEE-----------EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232
Query: 377 SVADDNTVQVWQMTDS 392
S + D V +W D+
Sbjct: 233 SCSQDGRVFIWTCDDA 248
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 162 LKGHDKEGYGLSWSPFKEG---YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
L+ H ++W+P + S S D ++ +W + + + VV
Sbjct: 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS--PKLLHKFNDVV 265
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268
VSW + N+ +G D ++ +W + + K +S +
Sbjct: 266 WHVSWSI-TANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASV 314
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 45/233 (19%), Positives = 92/233 (39%), Gaps = 33/233 (14%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
L + WS +G +L G + + ++DV + + + H++ V
Sbjct: 128 LAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDVESQTK------LRTMAGHQARV 179
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
+SW N ++ S + D+R N ++ H EV L++ + LA+
Sbjct: 180 GCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASG 235
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS--ADDRRLMVWDLNRI 335
+D V ++D R ++P ++H V V W P +LA+ D+++ W+
Sbjct: 236 GNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA-T 293
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV-ADDNTVQVW 387
G +D G +++ W+ + ++S+ DN + +W
Sbjct: 294 GARVNTVD------------AGS--QVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 7e-22
Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 29/218 (13%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
L WS +V+ + + + +W+ + + + + + V V W + +
Sbjct: 99 LDWSN---LNVVAVALERNVYVWNADSGSVSALAE-----TDESTYVASVKWS-HDGSFL 149
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
+ + I+D+ + + + H+ V LS+N + VL++ S + D+R
Sbjct: 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIA 206
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
+ L H+ EV + W + LAS +D + +WD
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDAR--------------SSIP 251
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSV--ADDNTVQVW 387
F+ H A + +W ++++ D + W
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 15/177 (8%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L+GH E GL+W +G L SG +DN + +WD + H + V+
Sbjct: 212 TLQGHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIP------KFTKTNHNAAVK 263
Query: 220 DVSW--HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP-YNEWVLAT 276
V+W N G D Q+ W+ T V A +V L ++P E +
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTH 322
Query: 277 ASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
D ++++ + +H V P+ + +++A D L W +
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRV 378
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 170 YGLSWSPFKEGYLVS--GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227
L WSP ++S G DN + +W S+ K +D AH++ V +
Sbjct: 307 TSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD----IPAHDTRVLYSALSPDG 361
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVN 262
L +A D L W + +R + +
Sbjct: 362 RILS-TAASDENLKFWRVYDGDHVKRPIPITKTPSS 396
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 39/251 (15%), Positives = 71/251 (28%), Gaps = 39/251 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
HDK + W+P K +V+ S D +++ D V V
Sbjct: 51 FSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRP---DGTWKQTLVLLRLNRAATFV 106
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLATA 277
W NE+ F + + K + L ++P N +LA
Sbjct: 107 RWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAG 164
Query: 278 SSDTTVALFDMRKMTV-------------PLHIL---SSHTEEVFQVEWDPNHETVLASS 321
+D + V P + + V V + P+ LA +
Sbjct: 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYA 223
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
D + + A + PP L + + + W V + +
Sbjct: 224 GHDSSVTIAY----------PSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG--YN 271
Query: 382 NTVQVWQMTDS 392
+ + Q +S
Sbjct: 272 YSPILLQGNES 282
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 20/241 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L K Y +++ + V+ + N++ L++ + H+ +V
Sbjct: 7 LHILPKPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHA----RTFSDHDKIVTC 60
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATA 277
V W N + D +++ R + T ++ + ++ ++P NE A
Sbjct: 61 VDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVG 118
Query: 278 SSDTTVALFDM---RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
S +++ V H+ + ++W PN +LA+ DR+ V
Sbjct: 119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYV 177
Query: 335 ---IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ + P + + + ++ + ++ D++V + +
Sbjct: 178 RDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSA 236
Query: 392 S 392
Sbjct: 237 P 237
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 20/186 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
+ + +SP L HD+ + + SA Q A+ + + +
Sbjct: 199 CAEYPSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPP--RALITVKLSQLPLR 255
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ W NE+ +AG + ++ + + + SF
Sbjct: 256 SLLWA--NESAIVAAGYNYSPILLQG-NESGWAHTRDLDAGTSKTSFTHTGNT-GEGREE 311
Query: 280 DTTVALFDMRKMTVPL----------HILSSHTEEVFQV---EWDPNHETVLASSADDRR 326
+ V+ +R + + + H + + P + T SS D R
Sbjct: 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGR 371
Query: 327 LMVWDL 332
+++W L
Sbjct: 372 VVLWTL 377
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 5e-15
Identities = 32/255 (12%), Positives = 62/255 (24%), Gaps = 24/255 (9%)
Query: 149 AEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDV----------- 196
E++ D + L W P L +G D K +
Sbjct: 129 FEQENDWWVSKHLKRPLRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEA 186
Query: 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ----TQQ 252
S + + V V + + N AG D + I +
Sbjct: 187 SVWGSRLPFNTVCAEYPSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245
Query: 253 RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312
VK + + L + + V A + + L + + +
Sbjct: 246 TVKLSQLPLRSLLWANESAIV--AAGYNYSPILLQGNESG--WAHTRDLDAGTSKTSFTH 301
Query: 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372
T ++ + L + L H A + ++ +
Sbjct: 302 TGNT-GEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNI 360
Query: 373 WVISSVADDNTVQVW 387
+S D V +W
Sbjct: 361 TAFTSSGTDGRVVLW 375
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 8/146 (5%)
Query: 148 QAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW--DVSALAQDKVI 205
+ + +K L W+ E +V+ ++ L + S A + +
Sbjct: 233 YPSAPEQPPRALITVKLSQLPLRSLLWAN--ESAIVAAGYNYSPILLQGNESGWAHTRDL 290
Query: 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVN-- 262
DA + + + +A + M + H+ +
Sbjct: 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATL 350
Query: 263 -YLSFNPYNEWVLATASSDTTVALFD 287
+ P N ++ +D V L+
Sbjct: 351 RPYAGTPGNITAFTSSGTDGRVVLWT 376
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 53/251 (21%), Positives = 107/251 (42%), Gaps = 19/251 (7%)
Query: 149 AEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDV-SALAQDKVID 206
+ L H K ++W P L +GS D+ + +W + + +D
Sbjct: 41 VKYDDFTLIDVLDETAHKKAIRSVAWRP--HTSLLAAGSFDSTVSIWAKEESADRTFEMD 98
Query: 207 AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----KAHEKEVN 262
+ + E HE+ V+ V+W + + D + IW+ + + + H ++V
Sbjct: 99 LLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157
Query: 263 YLSFNPYNEWVLATASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPN-HETVLAS 320
++ ++P +E +LA++S D TV ++ + +L+ H V+ ++D L S
Sbjct: 158 HVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380
+DD + VW E D ++ E + HK ++ + +W N +I+SV
Sbjct: 217 GSDDSTVRVWKY----MGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG--LIASVGA 269
Query: 381 DNTVQVWQMTD 391
D + V++ D
Sbjct: 270 DGVLAVYEEVD 280
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 8e-23
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 31/238 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LK + ++ + +S G L +GS D KI L V D + + AH+ + V
Sbjct: 10 LKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVK--YDDFTLIDVLDETAHKKAIRSV 64
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-------HEKEVNYLSFNPYNEWVL 274
+W + +L + D + IW + + HE EV ++++ + L
Sbjct: 65 AWR-PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-L 122
Query: 275 ATASSDTTVALFDM---RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
AT S D +V +++ + + +L H+++V V W P+ E +LASS+ D + +W
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIW- 180
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN-DPWVISSVADDNTVQVWQ 388
D E + GH+ + ++K + + S +DD+TV+VW+
Sbjct: 181 -----------KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 34/243 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
++GH+ E G++WS +G YL + S D + +W+ ++ + + V + H V+
Sbjct: 103 IEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVKH 158
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNP-YNEWVLATA 277
V WH +E L S+ D + IW + + HE V F+ + L +
Sbjct: 159 VIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 278 SSDTTV--------ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
S D+TV D ++ + H +V+ V W N ++AS D L V
Sbjct: 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAV 275
Query: 330 WDLNRIGDEQLELDAEDG--PPELLFSHGGHKAKISDFSW-NKNDPWVISSVADDNTVQV 386
++ DG + +I+ W N ++++ DD V
Sbjct: 276 YE------------EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 387 WQM 389
W +
Sbjct: 324 WSL 326
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
H ++ Y ++W G + S D + +++ + + A + V
Sbjct: 246 PDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVV 301
Query: 222 SWH-LKNENLFGSAGDDCQLMIWDLRT 247
W L + + + GDD + W L
Sbjct: 302 KWLELNGKTILATGGDDGIVNFWSLEK 328
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 30/225 (13%), Positives = 75/225 (33%), Gaps = 19/225 (8%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
+ P + L+ S D + ++ A++ + ++ + ++ +
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFIDNTDLQI 72
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR-- 289
+++ DL + + Q + +E + Y + L AS D + + D R
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 290 -KMTVPLHILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347
+ + L+S+ +V + + + L ++ ++ + L D+
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN-------- 184
Query: 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
G K +I D + + + + D V V D
Sbjct: 185 ---GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-15
Identities = 30/256 (11%), Positives = 76/256 (29%), Gaps = 20/256 (7%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199
+ V+ QA+ L+ + ++ + + G+ +I D+
Sbjct: 35 LTVYKFDIQAKNVDL-----LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89
Query: 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT----QQRVK 255
+ + +E+ + ++ +A D + + D R + +
Sbjct: 90 PSFQAL------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143
Query: 256 AHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDP 312
++ +V F N L +++ V F + S ++ V P
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203
Query: 313 NHETVLASSADDRRLMVWDLN-RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371
+ A S+ D R+ V + + D L ++ ++
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 372 PWVISSVADDNTVQVW 387
+ + + D + W
Sbjct: 264 KF-LYTAGSDGIISCW 278
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 9e-12
Identities = 29/190 (15%), Positives = 68/190 (35%), Gaps = 21/190 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L ++ + + L++ S D I + D + A+ ++ + V++
Sbjct: 95 LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--GVIAVKNLNSNNTKVKNK 152
Query: 222 SWHL-KNENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVNYLSFNPYNEWVLATA 277
+ + N + ++ Q+ + L + + ++ ++ P + A +
Sbjct: 153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212
Query: 278 SSDTTVA--LFDM--------RKMTVPLHILSSHTEE----VFQVEWDPNHETVLASSAD 323
S D VA FD ++ H L+ V +E+ P H+ L ++
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGS 271
Query: 324 DRRLMVWDLN 333
D + W+L
Sbjct: 272 DGIISCWNLQ 281
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 27/193 (13%), Positives = 68/193 (35%), Gaps = 25/193 (12%)
Query: 149 AEKQQDDCDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDNKICLWDVSALAQD--KVI 205
D L ++ + ++ L+ G +++++ + + D +
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMIWDLRTNQTQQRV----KAHEK 259
++ Y+ + DV+ K + + + D + +D + + + H
Sbjct: 189 ESGLKYQ-----IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 260 E---------VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310
VN + F+P L TA SD ++ ++++ + + + V ++
Sbjct: 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC 302
Query: 311 DPNHETVLASSAD 323
N LA+S D
Sbjct: 303 SDNI-LCLATSDD 314
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 17/234 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+GH + ++WSP G YL S S D C+W + + E HE+ V+
Sbjct: 57 SEGHQRTVRKVAWSP--CGNYLASASFDATTCIWKK----NQDDFECVTTLEGHENEVKS 110
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATA 277
V+W + NL + D + +W++ + V +H ++V ++ ++P ++ +LA+A
Sbjct: 111 VAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASA 168
Query: 278 SSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
S D TV L+ V L H V+ + +DP+ + LAS +DDR + +W G
Sbjct: 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPG 227
Query: 337 DEQLELDAEDGPP-ELLFS-HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+EQ + P + + + G H I D +W + + ++ D+ ++V+Q
Sbjct: 228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA-CGDDAIRVFQ 280
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-23
Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 27/252 (10%)
Query: 161 RLKGH-DKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
R+ H D + L+W+P G L S D +I +W D I + E H+ V
Sbjct: 10 RVPAHPDSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEG---DSWICKSVLSEGHQRTV 64
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLAT 276
V+W N SA D IW + + + HE EV +++ P LAT
Sbjct: 65 RKVAWS-PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LAT 122
Query: 277 ASSDTTVALFDM--RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
S D +V ++++ + +L+SHT++V V W P+ + +LAS++ D + ++
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLY---- 177
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394
E+ + GH++ + +++ + + S +DD TV++W+
Sbjct: 178 --------REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC-SDDRTVRIWRQYLPGN 228
Query: 395 RDDDDFLATTDD 406
+
Sbjct: 229 EQGVACSGSDPS 240
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 45/221 (20%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L H ++ + W P + L S S+D+ + L+ ++ E HES V +
Sbjct: 146 LNSHTQDVKHVVWHP-SQELLASASYDDTVKLYRE----EEDDWVCCATLEGHESTVWSL 200
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA----------------HEKEVNYLS 265
++ + S DD + IW +Q V H + + ++
Sbjct: 201 AFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259
Query: 266 FNPYNEWVLATASSDTTVALFDMR--------KMTVPLHILSSHTEEVFQVEWDPNHETV 317
+ LATA D + +F ++ H+ +H+++V V W+P +
Sbjct: 260 WCQLTGA-LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
LAS +DD + W R PE L H H
Sbjct: 319 LASCSDDGEVAFWKYQR--------------PEGLHHHHHH 345
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 142 VFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197
VF ++ QQ + H ++ ++W+P + G L S S D ++ W
Sbjct: 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 25/230 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
D+ L+W P + GS I LW+ K + +
Sbjct: 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNF----GIKDKPTFIKGIGAGGSITGL 170
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS--FNPYNEWVLATASS 279
++ N N F ++ + + D + N + + + + S + + ++ T +
Sbjct: 171 KFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVTGDN 229
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
V L +M L L H ++V V +P + LA+++ D+ + +WDL R +
Sbjct: 230 VGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL-RQVRGK 286
Query: 340 LELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
H+ ++ FS + + + + ++V+
Sbjct: 287 ASFLYSL----------PHRHPVNAACFSPDGA---RLLTTDQKSEIRVY 323
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 20/237 (8%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
++ G GL ++P + S + L D +V +
Sbjct: 158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSD---TINIWFC 213
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ + + + + +++ ++ + ++ H+K+V +++ NP +W LATAS
Sbjct: 214 SLDVSASSRMVV-TGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 280 DTTVALFDMR--KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
D TV ++D+R + H V + P+ L ++ + V+ ++ D
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQ-WD 329
Query: 338 EQLELD-------AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L L P + + + + + + + + T+ V+
Sbjct: 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLI-VVGRY--PDPNFKSCTPYELRTIDVF 383
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 30/258 (11%), Positives = 71/258 (27%), Gaps = 37/258 (14%)
Query: 144 DCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP----FKEGYLVSGSHDNKICLWDVSAL 199
D A + + + + + L P + CLW A
Sbjct: 8 DKAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAG 67
Query: 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQTQQR 253
Q + S+V + H G A Q + L + + Q+
Sbjct: 68 PQ--------ILPPCRSIVRTLHQHK-----LGRASWPSVQQGLQQSFLHTLDSYRILQK 114
Query: 254 VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDP 312
++ L+++P + +A S + L++ P + ++++P
Sbjct: 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174
Query: 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372
+ +S+ + + D + + S + +
Sbjct: 175 LNTNQFYASSMEGTTRLQ------------DFKGNILRVFASSDTINIWFCSLDVSASSR 222
Query: 373 WVISSVADDNTVQVWQMT 390
V++ + V + M
Sbjct: 223 MVVTG-DNVGNVILLNMD 239
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 24/191 (12%), Positives = 64/191 (33%), Gaps = 26/191 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+ H K+ ++ +P + +L + S D + +WD+ Q + + H V
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL---RQVRGKASFLYSLPHRHPVNAA 302
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY------LSFNPYNEWVLA 275
+ + + ++ ++ + H +++P ++
Sbjct: 303 CFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIV 360
Query: 276 TASS------------DTTVALFDMRKMTVPLHILSSHTEEVFQV-EWDPNHETVLASSA 322
T+ +FD + + + + + E++P +T LAS+
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT-LASAM 419
Query: 323 DDRRLMVWDLN 333
+++W
Sbjct: 420 GY-HILIWSQQ 429
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 43/245 (17%), Positives = 94/245 (38%), Gaps = 27/245 (11%)
Query: 154 DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213
D C D+R+ + + +P + S + + +V + +
Sbjct: 22 DQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTG--RVDKNVPLVCG 79
Query: 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------KAHEKEVNYLSF 266
H + V D++W N+N+ S +DC +M+W++ + + H K V +++
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDR 325
+P + VL +A D + ++D+ L + H + ++ V+W + + +S D+
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-ICTSCRDK 198
Query: 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK-AKISDFSWNKNDPWVIS--SVADDN 382
R+ V + R G E D H+ + + + + S +
Sbjct: 199 RVRVIEP-RKGTVVAEKD------------RPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 383 TVQVW 387
V +W
Sbjct: 246 QVALW 250
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 25/239 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV-SALAQDKVIDAMHVYEAHESVVED 220
+ GH ++W P + + SGS D + +W++ + + + E H V
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--HEKEVNYLSFNPYNEWVLATAS 278
V+WH +N+ SAG D +++WD+ T + H + + ++ + ++ T+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSC 195
Query: 279 SDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPN--HETVLASSADDRRLMVWDLNRI 335
D V + + RK TV H + T S +R++ +WD +
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD-TKH 254
Query: 336 GDEQL---ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+E L ELD G F + V D++++ +++T
Sbjct: 255 LEEPLSLQELDTSSGVLLPFFDPDTN--------------IVYLCGKGDSSIRYFEITS 299
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 41/249 (16%), Positives = 82/249 (32%), Gaps = 30/249 (12%)
Query: 152 QQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211
+P + L+GH K ++W P + L+S DN I +WDV A +
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP---- 172
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS--FNPY 269
+ H + V W + L ++ D ++ + + R + + F
Sbjct: 173 DVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS- 230
Query: 270 NEWVLAT---ASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDR 325
+L T S+ VAL+D + + PL + + V +DP+ V D
Sbjct: 231 EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290
Query: 326 RLMVWDLNRIGDEQLELDAEDGPP--ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383
+ + + P L +++ + P V
Sbjct: 291 SIRYF------------EITSEAPFLHYLSMFSSKESQRG-MGY---MPKRGLEVNKCEI 334
Query: 384 VQVWQMTDS 392
+ +++ +
Sbjct: 335 ARFYKLHER 343
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
+S T + +P ++ ++ +V L + G + P + G
Sbjct: 30 VSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR------VDKNVPLVC----G 79
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQM-TDSIYRDDDDFLAT 403
H A + D +W ++ VI+S ++D TV VW++ + + + T
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 11/232 (4%), Positives = 38/232 (16%), Gaps = 25/232 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ G ++ ++ + V+ +
Sbjct: 21 MMLAADVHLGTKNCD--FQMERYVYKRRTDGIYIINLGKT------WEKLQLAARVIVAI 72
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + + + ++ + H
Sbjct: 73 ENP-QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE-PRLLILTD 130
Query: 282 TVALFD------MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
+ + + + N++ + L L
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM- 189
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L D D K +++ + V
Sbjct: 190 RGTILPGHKWDVM--------VDLFFYRDPEEAKEQEEEEAALVAPDYGAVA 233
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 10/240 (4%), Positives = 34/240 (14%), Gaps = 39/240 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L+ + + + + + + L + H
Sbjct: 62 LQLAARVIVAIENPQ--DIIVQSARPYGQRAVLKFAQYTGA------HAIAGRHTPGTFT 113
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------KAHEKEVNYLSFNPYNEWV 273
+ + + + N+
Sbjct: 114 NQLQT-SFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGK 172
Query: 274 LATASSDTTVALFDM----RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
+ +A + + + E E A+ V
Sbjct: 173 QSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV 232
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
+ + + + + A
Sbjct: 233 AEYAAPAADTWGGE-------------WGTDAAAQPAAIPAQA---GADWTAAPAPAAGG 276
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 32/228 (14%), Positives = 76/228 (33%), Gaps = 31/228 (13%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
K+ + + E +++ + + L + E+ V
Sbjct: 916 KNSAIVLKQEIDVVFQE-NETMVLAVDNIRGLQLIAGKTG---------QIDYLPEAQVS 965
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ +D + I +L N+ H+K V ++ F + L ++S
Sbjct: 966 CCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSE 1023
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D+ + +++ + T L +H E V + L S + D + VW++ G +
Sbjct: 1024 DSVIQVWNWQ--TGDYVFLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVIT-GRIE 1078
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ H+ + + + + S+ + D T ++W
Sbjct: 1079 RDFT-------------CHQGTVLSCAISSDATKFSST-SADKTAKIW 1112
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-23
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 19/230 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+K H+ E ++S + Y+ + S D K+ +WD A K++ H Y+ H V
Sbjct: 653 IKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDS---ATGKLV---HTYDEHSEQVNCC 705
Query: 222 SWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ K N L + +D L +WDL + + + H VN+ F+P +E LA+ S+D
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-LASCSAD 764
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS---SADDRRLMVWDLNRIGD 337
T+ L+D+R ++ + + + E ++ SAD +++V N++
Sbjct: 765 GTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV-- 821
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L D L H GH + I ++ D + + V++W
Sbjct: 822 --LLFDIHTS-GLLAEIHTGHHSTIQYCDFSPYDHLAVIA-LSQYCVELW 867
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 8e-22
Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 36/240 (15%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
+ L+ H + + L+S S D + +W+V + H+ V
Sbjct: 1038 VFLQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRI------ERDFTCHQGTVL 1089
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ + F S D IW +K H V +F+ + +LAT
Sbjct: 1090 SCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD 1147
Query: 280 DTTVALFDMR--------KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
+ + ++++ ++H V V + P+ +T L S+ + W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT-LVSAGGYLKW--WN 1204
Query: 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ GD + + + + + +V + + + Q+ +
Sbjct: 1205 VAT-GDSSQTFY-------------TNGTNLKKIHVSPDFRTYV-TVDNLGILYILQVLE 1249
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 31/244 (12%), Positives = 85/244 (34%), Gaps = 33/244 (13%)
Query: 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDK 203
K ++ + + + SWS +G ++ + + K+ L+D+
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAAKN-KVLLFDIHTSGL-- 831
Query: 204 VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263
++ H S ++ + ++L A + +W++ + + H V+
Sbjct: 832 ---LAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
+ F+P TAS D T+ +++ +K + ++ V + N + + +
Sbjct: 888 VMFSPDGSS-FLTASDDQTIRVWETKK---VCKNSAIVLKQEIDVVFQENETM-VLAVDN 942
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383
R L + + G ++ + +S + + +V +D
Sbjct: 943 IRGLQLI------------AGKTG--QIDYLPEAQ---VSCCCLSPHLEYVAFG-DEDGA 984
Query: 384 VQVW 387
+++
Sbjct: 985 IKII 988
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 7e-19
Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 32/237 (13%)
Query: 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215
C+P+ + + + I + H
Sbjct: 569 CEPETSEVYRQAKLQAKQEGDTG-RLYLEWINKKTIKNLSRLVV------------RPHT 615
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275
V + ++ S G D L ++ T + +KAHE EV +F+ + + +A
Sbjct: 616 DAVYHACFS-QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IA 673
Query: 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN-HETVLASSADDRRLMVWDLNR 334
T S+D V ++D +H H+E+V + + +LA+ ++D L +WDLN+
Sbjct: 674 TCSADKKVKIWDSATGK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ + + GH ++ ++ +D + S + D T+++W +
Sbjct: 733 -KECRNTMF-------------GHTNSVNHCRFSPDDELLASC-SADGTLRLWDVRS 774
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 35/227 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH + +VSGS D + +WD+ +HV H + V V
Sbjct: 195 LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQC------LHVLMGHVAAVRCV 245
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ S D + +WD T ++ H V L F+ + + + S DT
Sbjct: 246 QYD---GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDT 299
Query: 282 TVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
++ ++D+ T +H L+ H +E N L S D + +WD+ G
Sbjct: 300 SIRVWDVE--TGNCIHTLTGHQSLTSGMELKDNI---LVSGNADSTVKIWDIKT-GQCLQ 353
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L H++ ++ + + + + +DD TV++W
Sbjct: 354 TLQG----------PNKHQSAVTCLQF---NKNFVITSSDDGTVKLW 387
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 49/227 (21%), Positives = 81/227 (35%), Gaps = 37/227 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
LKGHD G +VSGS DN + +W + H V
Sbjct: 114 LKGHDDHVIT-CLQF--CGNRIVSGSDDNTLKVWSAVTGKC------LRTLVGHTGGVWS 164
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+N+ S D L +W+ T + + H V + + + + S D
Sbjct: 165 SQM---RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRD 218
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
T+ ++D+ LH+L H V V++D + S A D + VW
Sbjct: 219 ATLRVWDIETGQ-CLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVW---------- 264
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
D E L + GH ++ + D + S + D +++VW
Sbjct: 265 --DPETE--TCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVW 304
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH Y L F ++VSGS D I +WDV +H H+S+ +
Sbjct: 275 LQGHTNRVYSLQ---FDGIHVVSGSLDTSIRVWDVETGNC------IHTLTGHQSLTSGM 325
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQ---TQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+N+ S D + IWD++T Q T Q H+ V L FN + T+S
Sbjct: 326 EL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSS 379
Query: 279 SDTTVALFDMR----KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR----RLMVW 330
D TV L+D++ + V+++ V A + + +L+V
Sbjct: 380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVL 438
Query: 331 DLN 333
D +
Sbjct: 439 DFD 441
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 47/244 (19%), Positives = 78/244 (31%), Gaps = 35/244 (14%)
Query: 144 DCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK 203
+ + + +++ D L +K G SP+K W L
Sbjct: 56 NLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK---SAYIRQHRIDTNWRRGELKS-- 110
Query: 204 VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263
V + H+ V N S DD L +W T + + + H V
Sbjct: 111 ----PKVLKGHDDHVI-TCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
++ + S+D T+ +++ +H L HT V + + S +
Sbjct: 165 SQMRDN---IIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHEKR---VVSGSR 217
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383
D L VWD+ G L GH A + + D + S A D
Sbjct: 218 DATLRVWDIET-GQCLHVLM-------------GHVAAVRCVQY---DGRRVVSGAYDFM 260
Query: 384 VQVW 387
V+VW
Sbjct: 261 VKVW 264
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 21/152 (13%)
Query: 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+D L + + + ++V F + W A + ++
Sbjct: 54 EDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIH-SPWKSAYIRQHRIDTNWRRGELK-SP 111
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+L H + V + S +DD L VW G L
Sbjct: 112 KVLKGHDDHVITC-LQFCGNR-IVSGSDDNTLKVWSAVT-GKCLRTLV------------ 156
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
GH + N +I S + D T++VW
Sbjct: 157 -GHTGGVWSSQMRDN---IIISGSTDRTLKVW 184
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 2e-23
Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 33/230 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH + + +V+ S D LWD+ Q + H V +
Sbjct: 139 LAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSL 190
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
S + LF S D +WD+R +Q HE ++N + F P N AT S D
Sbjct: 191 SLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDA 248
Query: 282 TVALFDMR----KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
T LFD+R MT + + V + + L + DD VWD + D
Sbjct: 249 TCRLFDLRADQELMTYSHD---NIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALK-AD 303
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L GH ++S + V + + D+ +++W
Sbjct: 304 RAGVLA-------------GHDNRVSCLGVTDDGMAVATG-SWDSFLKIW 339
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 6e-19
Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
GH + LS +P + VSG+ D LWDV + HES +
Sbjct: 180 FTGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMC------RQTFTGHESDINA 231
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH--EKEVNYLSFNPYNEWVLATAS 278
+ + N N F + DD ++DLR +Q + +SF+ + +L
Sbjct: 232 ICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
D ++D K +L+ H V + + +A+ + D L +W+
Sbjct: 290 DDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 38/231 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LK ++ ++ + D Q + H + + +
Sbjct: 14 LKNQIRDARKACADA--TLSQITNN-------IDPVGRIQMRTR---RTLRGHLAKIYAM 61
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
W + L SA D +L+IWD T + V ++ P + +A D
Sbjct: 62 HWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY-VACGGLDN 119
Query: 282 TVALFDMR---KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
++++++ L+ HT + + +++ + +S+ D +WD+ G +
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIET-GQQ 176
Query: 339 QLELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVW 387
GH + + + + S A D + ++W
Sbjct: 177 TTTFT-------------GHTGDVMSLSLAPDTR---LFVSGACDASAKLW 211
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 24/226 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L H + L F G +V+ S D I +WD+ A I V H + V V
Sbjct: 209 LIHHCEAVLHLR---FNNGMMVTCSKDRSIAVWDM---ASPTDITLRRVLVGHRAAVNVV 262
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ + SA D + +W+ T + + + H++ + L + ++ + SSD
Sbjct: 263 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDN 316
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
T+ L+D+ L +L H E V + +D + S A D ++ VWDL
Sbjct: 317 TIRLWDIECGAC-LRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDL-----VAAL 367
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L + H ++ + ++ ++SS + D+T+ +W
Sbjct: 368 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS-SHDDTILIW 410
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 39/229 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH L + E +++GS D+ + +WDV+ ++ H V +
Sbjct: 169 LTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNTGEM------LNTLIHHCEAVLHL 219
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSFNPYNEWVLATAS 278
+ N + + D + +WD+ + + H VN + F+ + +AS
Sbjct: 220 RF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS 273
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
D T+ +++ + L+ H + +++ + S + D + +W
Sbjct: 274 GDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLW-------- 321
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
D E G L GH+ + + D I S A D ++VW
Sbjct: 322 ----DIECG--ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVW 361
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 36/180 (20%), Positives = 73/180 (40%), Gaps = 26/180 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH + F + Y+VS S D I +W+ S + H+ + +
Sbjct: 252 LVGHRAAVNVVD---FDDKYIVSASGDRTIKVWNTSTCEF------VRTLNGHKRGIACL 302
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ + L S D + +WD+ + ++ HE+ V + F+ + + + D
Sbjct: 303 QYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDG 356
Query: 282 TVALFDMRKMTVP--------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
+ ++D+ P L L H+ VF++++D + SS+ D +++WD
Sbjct: 357 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFL 413
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 38/231 (16%)
Query: 161 RLKGHDKEGYG-LSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
R+ + G + +VSG DN I +WD + L + H V
Sbjct: 125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC------KRILTGHTGSV 176
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ + +E + + D + +WD+ T + + H + V +L FN ++ T S
Sbjct: 177 LCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCS 230
Query: 279 SDTTVALFDMR--KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
D ++A++DM +L H V V++D + + S++ DR + VW+ +
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNTST-C 286
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ L+ GHK I+ + ++ S + DNT+++W
Sbjct: 287 EFVRTLN-------------GHKRGIACLQY---RDRLVVSGSSDNTIRLW 321
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS---ALAQDKVIDAMHVYEAHESVV 218
L+GH++ + F +VSG++D KI +WD+ + H V
Sbjct: 332 LEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
+ + +E S+ D ++IWD + Q Y +
Sbjct: 389 FRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 5e-23
Identities = 50/384 (13%), Positives = 99/384 (25%), Gaps = 65/384 (16%)
Query: 45 WVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIP 104
W+ + D P + + S + N
Sbjct: 141 WLNIEENTDIGKDI---QYLAVAVSQYMDEPL--NEHLEMFDKEKHSSCIQIFKMNTSTL 195
Query: 105 KVEIAQKIRVD-GEVNRARCMPQKPN-----LVGTKTSSCEVYVFDCAKQAEKQQDDC-- 156
Q I GEV + + + + + A
Sbjct: 196 HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255
Query: 157 -DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215
P L L D ++ +V G + + +D++ + H+
Sbjct: 256 EKPSLTLSLAD--SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHD 308
Query: 216 SVVEDV--SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE--VNYLSFNPYNE 271
S + V ++ + + + D I++ + T + + + + + + P
Sbjct: 309 SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368
Query: 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD-------- 323
+ +++ R +H L S + + H VLA SAD
Sbjct: 369 -SYIYSDGASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426
Query: 324 ----------------DRRLMVWDLNRIGD--------EQLELDAEDGPPELLFSHGGHK 359
RL WD + D E L D + +HG +
Sbjct: 427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGIN- 485
Query: 360 AKISDFSWNKNDP---WVISSVAD 380
I+ WN+ S +
Sbjct: 486 --ITCTKWNETSAGGKCYAFSNSA 507
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 78.8 bits (193), Expect = 4e-16
Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN-----LFGSAGD 236
H + I ++ ++ V + V D+ WH
Sbjct: 176 FDKEKHSSCIQIFKMNTSTLHCVK--VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ 233
Query: 237 DCQLMIWDLRTNQTQQRVKAHEKEVNY---------LSFNPYNEWVLATASSDTTVALFD 287
+ + ++ N T V ++ + +F+ + + + VA FD
Sbjct: 234 EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFD 293
Query: 288 MRKMTVPLHILSSHTEEVFQVE--WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345
+ VP H + V + +TV+++ A D +++
Sbjct: 294 LTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK------------ 341
Query: 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
D + + + I S +++
Sbjct: 342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-SLRAV 382
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 25/230 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEG--YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
D LS+SP +L++GS N + W+V Q + H V
Sbjct: 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHTGPVL 90
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY-NEWVLATAS 278
DV W + + +A D +WDL +NQ Q + H+ V + + N + T S
Sbjct: 91 DVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS 148
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
D T+ +D R P+ +L P V+A++ +R L+V+ L E
Sbjct: 149 WDKTLKFWDTRSSN-PMMVLQLPERCYCADVIYPM--AVVATA--ERGLIVYQLENQPSE 203
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWN-KNDPWVISSVADDNTVQVW 387
+ ++ + +N P + + + V +
Sbjct: 204 FR---------RIESPLKHQHRCVA-IFKDKQNKPTGFALGSIEGRVAIH 243
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 41/243 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ H + WS +G + + S D +WD+S+ ++ H++ V+
Sbjct: 82 QQMHTGPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQI-------AQHDAPVKT 132
Query: 221 VSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ W N + + D L WD R++ ++ E+ P V+ATA
Sbjct: 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA--VVATAER 190
Query: 280 DTTVALFDMRKMTVPL-HILSSHTEEVFQVEWDPNHE---TVLASSADDRRLMVWDLNRI 335
V + + I S + V + + T A + + R+ + +N
Sbjct: 191 GLIV--YQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN-- 246
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV-----------ISSVADDNTV 384
P + F+ H++ ++ S ++ V +++V D
Sbjct: 247 ---------PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297
Query: 385 QVW 387
W
Sbjct: 298 SFW 300
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 42/250 (16%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
+++ HD + W +++GS D + WD + M V + E
Sbjct: 121 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP------MMVLQLPERCY 174
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP---YNEWVLA 275
+ + +A + + + ++ ++ + + ++ A
Sbjct: 175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232
Query: 276 TASSDTTVALFD-------MRKMTVPLH-------ILSSHTEEVFQVEWDPNHETVLASS 321
S + VA+ T H V + + P H T LA+
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATV 291
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
D R W D + L + IS +N N + + D
Sbjct: 292 GSDGRFSFW------------DKDAR--TKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337
Query: 382 NTVQVWQMTD 391
+ + +
Sbjct: 338 -WSKGHEFYN 346
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-12
Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 27/187 (14%)
Query: 135 TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP---FKEGYLVSGSHDNKI 191
T+ + V+ Q + + + ++ K GS + ++
Sbjct: 187 TAERGLIVYQLENQPSEFR------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240
Query: 192 CLWDVSALAQDKVI---------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242
+ ++ K V +++H + G D +
Sbjct: 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-PVHGTLATVGSDGRFSF 299
Query: 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM----RKMTVPLHIL 298
WD + + ++ ++ FN N + A ASS + +K + L
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFYNPQKKNYIFLR-- 356
Query: 299 SSHTEEV 305
+ EE+
Sbjct: 357 -NAAEEL 362
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 3e-22
Identities = 44/229 (19%), Positives = 100/229 (43%), Gaps = 26/229 (11%)
Query: 162 LKGHDKEGYGLSWSPFKE---GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
+ HD + ++W K+ +V+GS D+ + +W +D+ +D E H+ V
Sbjct: 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----RDERLDLQWSLEGHQLGV 83
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
V + S+ D + +WDL + + + A + L+F+P +++ LAT +
Sbjct: 84 VSVDIS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGT 141
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
V +F + + L + + + + + P+ + LAS A D + ++D+ G
Sbjct: 142 HVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIAT-GKL 198
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L+ GH I +++ + ++++ +DD ++++
Sbjct: 199 LHTLE-------------GHAMPIRSLTFSPDSQLLVTA-SDDGYIKIY 233
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 4e-22
Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 28/227 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ + + L++SP + YL +G+H K+ ++ V + + + + +
Sbjct: 118 IDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKK------EYSLDTRGKFILS 169
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+++ + L S D + I+D+ T + ++ H + L+F+P + +L TAS D
Sbjct: 170 IAYSPDGKYLA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDD 227
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
+ ++D++ LS H V V + P+ SS+ D+ + VW
Sbjct: 228 GYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVW---------- 275
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
D + + H+ ++ +N N ++S DD + ++
Sbjct: 276 --DVGTR--TCVHTFFDHQDQVWGVKYNGNGSKIVSV-GDDQEIHIY 317
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L K +++SP +G YL SG+ D I ++D++ +H E H +
Sbjct: 160 LDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKL------LHTLEGHAMPIRS 211
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+++ + L +A DD + I+D++ + H V ++F P + ++SSD
Sbjct: 212 LTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSD 269
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
+V ++D+ T +H H ++V+ V+++ N + S DD+ + ++D
Sbjct: 270 KSVKVWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSK-IVSVGDDQEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 5e-18
Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 33/214 (15%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW---HLKNENLFGSAGDD 237
+ S +N +AH+ + V+W +N + D
Sbjct: 4 HHHHSSRENLYFQGTNQYGIL------FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD 57
Query: 238 CQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+ +W R + ++ H+ V + + A++S D + L+D+ +
Sbjct: 58 DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPI-AASSSLDAHIRLWDLENGK-QI 115
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + + + + + P+ + LA+ ++ ++ + G ++ LD
Sbjct: 116 KSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGV-ESGKKEYSLD------------ 161
Query: 356 GGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
I +S D ++S A D + ++
Sbjct: 162 -TRGKFILSIAYSP---DGKYLASGAIDGIINIF 191
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN---HETVLASSADDRRLM 328
+S + + + +H + ++ V W N + + + + D +
Sbjct: 3 HHHHHSSRENLYFQGTNQYGIL-FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK 61
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
VW D +L +S GH+ + + P SS + D +++W
Sbjct: 62 VW------------KWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS-SLDAHIRLW 107
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVS 197
H + +G+ ++ G +VS D +I ++D
Sbjct: 286 FFDHQDQVWGVKYNG--NGSKIVSVGDDQEIHIYDCP 320
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 23/229 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGH+ ++ +P ++S S D I +W ++ + H V DV
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR-DETNYGIPQRALRGHSHFVSDV 92
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ S D L +WDL T T +R H K+V ++F+ N + + S D
Sbjct: 93 VISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDK 150
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQL 340
T+ L++ + SH+E V V + PN ++ S D+ + VW
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW---------- 200
Query: 341 ELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
+ + +L +H GH ++ S D + +S D +W
Sbjct: 201 --NLANC--KLKTNHIGHTGYLNTVTVS---PDGSLCASGGKDGQAMLW 242
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 39/214 (18%), Positives = 88/214 (41%), Gaps = 26/214 (12%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
+ SG L+ S + + + + H V ++ + ++ SA D +
Sbjct: 6 HHSSGVDLGTENLYFQSMMTEQMTL--RGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 241 MIWDLRTNQT-----QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
++W L ++T Q+ ++ H V+ + + ++ + S D T+ L+D+ T
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-ALSGSWDGTLRLWDLTTGT-TT 121
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
HT++V V + ++ + S + D+ + +W+ + ++ +
Sbjct: 122 RRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDE------------ 168
Query: 356 GGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
H +S FS N ++P ++S D V+VW
Sbjct: 169 -SHSEWVSCVRFSPNSSNPIIVSC-GWDKLVKVW 200
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-17
Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 20/187 (10%)
Query: 156 CDPDLRLKGHDKEGYGLSWSPF-KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH 214
C ++ + H + + +SP +VS D + +W+++ + H
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL------KTNHIGH 214
Query: 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274
+ V+ + +L S G D Q M+WDL + + + +N L F+P W+
Sbjct: 215 TGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWL- 271
Query: 275 ATASSDTTVALFDMR--------KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326
A++ ++ ++D+ K V + + + W + +T L + D
Sbjct: 272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNL 329
Query: 327 LMVWDLN 333
+ VW +
Sbjct: 330 VRVWQVT 336
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 31/230 (13%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
L+GH + S +G + +SGS D + LWD++ + H V
Sbjct: 81 ALRGHSHFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTT------TRRFVGHTKDVL 132
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKAHEKEVNYLSFNP-YNEWVLATA 277
V++ N + S D + +W+ + ++H + V+ + F+P + ++ +
Sbjct: 133 SVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
D V ++++ HT + V P+ AS D + M+WDLN G
Sbjct: 192 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNE-GK 248
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
LD D L FS + W+ + A ++++W
Sbjct: 249 HLYTLDGGDIINALCFSPNRY--------------WLCA--ATGPSIKIW 282
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 22/231 (9%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
R GH K+ +++S + +VSGS D I LW+ + + E+H V
Sbjct: 123 RFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCK-----YTVQDESHSEWVS 175
Query: 220 DVSWH--LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
V + N + S G D + +W+L + + H +N ++ +P + + A+
Sbjct: 176 CVRFSPNSSNPIIV-SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASG 233
Query: 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
D L+D+ + L+ L + + + + PN + +A + +WDL
Sbjct: 234 GKDGQAMLWDLNEGK-HLYTLDGG-DIINALCFSPNRYWL--CAATGPSIKIWDLEG-KI 288
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
EL E + + +W+ + + + DN V+VWQ
Sbjct: 289 IVDELKQEVISTSS----KAEPPQCTSLAWSADGQTLFAG-YTDNLVRVWQ 334
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH K + +SP G +L S S D I +W H+ + D
Sbjct: 19 LAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKF------EKTISGHKLGISD 70
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
V+W + NL SA DD L IWD+ + + + +K H V +FNP + + + S D
Sbjct: 71 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFD 128
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
+V ++D++ L L +H++ V V ++ + +++ SS+ D +WD G
Sbjct: 129 ESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDT-ASGQCLK 185
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L +S ++ N +++++ DNT+++W
Sbjct: 186 TLI------------DDDNPPVSFVKFSPNGKYILAA-TLDNTLKLW 219
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 3e-21
Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 32/233 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
LKGH + +++P + +VSGS D + +WDV + AH V
Sbjct: 103 LKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKC------LKTLPAHSDPVSA 154
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASS 279
V ++ ++ +L S+ D IWD + Q + + V+++ F+P N + A+
Sbjct: 155 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 212
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEW---DPNHETVLASSADDRRLMVWDLNRIG 336
D T+ L+D K L + H E + + + + S ++D + +W+L
Sbjct: 213 DNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQT-K 269
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS-SVADDNTVQVWQ 388
+ +L GH + + + + + S ++ +D T+++W+
Sbjct: 270 EIVQKLQ-------------GHTDVVISTACHPTENIIASAALENDKTIKLWK 309
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 2e-20
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 30/230 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ GH ++WS + LVS S D + +WDVS+ + + H + V
Sbjct: 61 ISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWDVSSGKC------LKTLKGHSNYVFC 112
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+++ ++ NL S D + IWD++T + + + AH V+ + FN + ++ ++S D
Sbjct: 113 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD 170
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
++D ++ V V++ PN + + ++ D L +W
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLW---------- 219
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDP---WVISSVADDNTVQVW 387
D G + L ++ GHK + N + W++S ++DN V +W
Sbjct: 220 --DYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIW 264
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 2e-15
Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L H + ++ +G +VS S+D +WD ++ K + + V
Sbjct: 145 LPAHSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTL-----IDDDNPPVSF 197
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN--YLSFNPYNEWVLATAS 278
V + N +A D L +WD + + H+ E + +F+ + + S
Sbjct: 198 VKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL-ASSADDRRLMVWDLN 333
D V +++++ + + L HT+ V P + A+ +D+ + +W +
Sbjct: 257 EDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 5e-15
Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
H V V + N S+ D + IW + ++ + H+ ++ ++++
Sbjct: 16 KFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327
+ L +AS D T+ ++D+ L L H+ VF ++P + S + D +
Sbjct: 75 SDSNL-LVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 131
Query: 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQ 385
+WD+ + G L H +S F+ D +I S + D +
Sbjct: 132 RIWDV-KTGKCLKTLP-------------AHSDPVSAVHFNR---DGSLIVSSSYDGLCR 174
Query: 386 VW 387
+W
Sbjct: 175 IW 176
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
AT S T V + L+ HT+ V V++ PN E LASS+ D+ + +W
Sbjct: 1 ATQSKPTPV-----KPNYALKFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW---- 50
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
A DG + + GHK ISD +W+ + ++S+ +DD T+++W
Sbjct: 51 --------GAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSA-SDDKTLKIW 92
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 24/230 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ +++P G + G DNK ++ ++ + + H + +
Sbjct: 102 VTMPCTWVMACAYAP--SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE-WVLATASS 279
S+ ++ +A D +WD+ + Q Q H +V L P +
Sbjct: 160 CSF-TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
D ++DMR + +H +V V + P+ + AS +DD ++
Sbjct: 219 DKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLY--------- 267
Query: 340 LELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVW 387
D ++S S DFS ++ + +D T+ VW
Sbjct: 268 ---DLRADREVAIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVW 311
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 34/232 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ H S++ +++ S D LWDV + + + H + V
Sbjct: 150 VAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQL------LQSFHGHGADVLC 201
Query: 221 VSWHLKNE-NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
+ N F S G D + M+WD+R+ Q Q + HE +VN + + P + A+ S
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSD 260
Query: 280 DTTVALFDMR----KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
D T L+D+R S V++ + L + +D + VWD+ +
Sbjct: 261 DATCRLYDLRADREVAIYSKE---SIIFGASSVDFSLSGRL-LFAGYNDYTINVWDVLK- 315
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
G L GH+ ++S + + S + D+T++VW
Sbjct: 316 GSRVSILF-------------GHENRVSTLRVSPDGTAFCSG-SWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 32/240 (13%)
Query: 162 LKGHDKEGYGLSWSP----FKEGYLVSGSHDNKICLWDVSALAQDKVIDAM---HVYEAH 214
G + S K + + + L V+ + M + H
Sbjct: 4 TDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGH 63
Query: 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274
+ V + W K++ S+ D ++++WD T + V V ++ P +
Sbjct: 64 GNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-I 121
Query: 275 ATASSDTTVALFDMRKMTVP-----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329
A D +++ + ++ HT + + + + +++ D +
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCAL 180
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVW 387
WD+ G GH A + D + ++ +S D VW
Sbjct: 181 WDVES-GQLLQSFH-------------GHGADVLCLDLAPSETGNTFVSG-GCDKKAMVW 225
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
+ + +S G L +G +D I +WDV ++ + + HE+ V
Sbjct: 278 YSKESIIFGASSVDFSL--SGRLLFAGYNDYTINVWDVLKGSR------VSILFGHENRV 329
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIW 243
+ + F S D L +W
Sbjct: 330 STLRVS-PDGTAFCSGSWDHTLRVW 353
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 8e-22
Identities = 33/255 (12%), Positives = 78/255 (30%), Gaps = 38/255 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVS---ALAQDKVIDAMHVYEAHESV 217
+ HD + W+ + G + S S+D + LW+ + + + +
Sbjct: 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS 112
Query: 218 VEDVSWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQR-------------VKAHEKEVNY 263
+ V + G+D L ++D + H +
Sbjct: 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172
Query: 264 LSFNP--YNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHE---TV 317
LS+ P ++ LA ++ + + + + L H + + W P+ +
Sbjct: 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377
+A+ D R+ ++ + L S F + +
Sbjct: 233 IATGCKDGRIRIFKI-------------TEKLSPLASEESLTNSNM-FDNSADVDMDAQG 278
Query: 378 VADDNTVQVWQMTDS 392
+D NT + ++ +
Sbjct: 279 RSDSNTEEKAELQSN 293
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 32/246 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA------- 213
L Y + ++P G L +D + L+D + + +
Sbjct: 106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165
Query: 214 HESVVEDVSWH--LKNENLFGSAGDDCQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFNP- 268
H +SW + + + ++ + + ++ H+ + +S+ P
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 269 --YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV--EWDPNHETVLASSADD 324
++AT D + +F + T L L+S + + + +D
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKI---TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282
Query: 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384
+L ELL H H ++ SWN + S+ DD V
Sbjct: 283 NTEEKAELQ---------SNLQV--ELLSEHDDHNGEVWSVSWNLTGTILSSA-GDDGKV 330
Query: 385 QVWQMT 390
++W+ T
Sbjct: 331 RLWKAT 336
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 29/226 (12%)
Query: 144 DCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--FKEGYLVSGSHDNKICLWDVSALAQ 201
+ + + H + + LSW P F L + + I +
Sbjct: 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG----K 200
Query: 202 DKVIDAMHVYEAHESVVEDVSW---HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258
D + H+S++ +SW + L + D ++ I+ + + + E
Sbjct: 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL--SPLASEE 258
Query: 259 KEVNYLSFNPYNEW-VLATASSD----TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313
N F+ + + A SD L ++ + L H EV+ V W+
Sbjct: 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL-LSEHDDHNGEVWSVSWNLT 317
Query: 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359
T+L+S+ DD ++ +W + + +
Sbjct: 318 -GTILSSAGDDGKVRLWKATY-----------SNEFKCMSVITAQQ 351
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 44/259 (16%), Positives = 98/259 (37%), Gaps = 45/259 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
GHD + + + + G ++ + S D I ++ + + + + AH+S +
Sbjct: 7 DSGHDDLVHDVVYDFY--GRHVATCSSDQHIKVFKLDKDTSNWEL--SDSWRAHDSSIVA 62
Query: 221 VSW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---------HEKEVNYLSFNPYN 270
+ W + + SA D + +W+ +Q + + + + + F P +
Sbjct: 63 IDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 271 E-WVLATASSDTTVALFDMR------------KMTVPLHILSSHTEEVFQVEWDPNHETV 317
LA +D + L+D +M V ++H + F + W P+ +
Sbjct: 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182
Query: 318 --LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375
LA SA ++ ++ +DG + GHK+ I SW +
Sbjct: 183 EKLAVSALEQAIIYQ------------RGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230
Query: 376 SSVA---DDNTVQVWQMTD 391
+A D ++++++T+
Sbjct: 231 QLIATGCKDGRIRIFKITE 249
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 29/233 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH+ L+ S + L+S S D + W ++ K + ++ H +V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG-DDQKFGVPVRSFKGHSHIVQDC 71
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ + SA D L +WD+ T +T QR H+ +V + + + + S D
Sbjct: 72 TLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDK 129
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-----TVLASSADDRRLMVWDLNRIG 336
T+ ++ ++ L L H + V QV PN + + S+ +D+ + W+L
Sbjct: 130 TIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---- 183
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
++ GH + I+ S D +I+S D + +W
Sbjct: 184 --------NQF--QIEADFIGHNSNINTLTAS---PDGTLIASAGKDGEIMLW 223
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 8e-19
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 35/233 (15%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
KGH + + +G Y +S S D + LWDV+ + H+S V
Sbjct: 60 SFKGHSHIVQDCTLTA--DGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVM 111
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV-----L 274
V K + S D + +W + Q + H V+ + P + +
Sbjct: 112 SVDIDKKASMII-SGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
+A +D V +++ + H + + P+ +AS+ D +M+W+L
Sbjct: 170 ISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTL-IASAGKDGEIMLWNLAA 227
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
L A+D L FS + W+ + A ++V+
Sbjct: 228 -KKAMYTLSAQDEVFSLAFSPNRY--------------WLAA--ATATGIKVF 263
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-17
Identities = 46/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
R GH + + + ++SGS D I +W + + H V
Sbjct: 102 RFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVS 152
Query: 220 DVSWHLKNENLFG-----SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274
V + SAG+D + W+L Q + H +N L+ +P +
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-I 211
Query: 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
A+A D + L+++ ++ LS+ E VF + + PN + ++A + V+ L+
Sbjct: 212 ASAGKDGEIMLWNL-AAKKAMYTLSAQDE-VFSLAFSPNRYWL--AAATATGIKVFSLDP 267
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390
+L PE + +W+ + + + DN ++VWQ+
Sbjct: 268 -QYLVDDLR-----PEFAGYSKAAEPHAVSLAWSADGQTLFAG-YTDNVIRVWQVM 316
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 32/234 (13%), Positives = 83/234 (35%), Gaps = 33/234 (14%)
Query: 162 LKGHDKEGYGLSWSPF---KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
+ H++ +G+ ++ + + + N++ L++ + + +++ + +V +
Sbjct: 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS-YVDADADENF 72
Query: 219 EDVSWHL---KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275
+W + L AG + I + T Q + H +N L F+P + +L
Sbjct: 73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132
Query: 276 TASSDTTVALFDMR--KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
+ S D + L++++ + + H +EV ++D E + S D L +W
Sbjct: 133 SVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGMDHSLKLW--- 188
Query: 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
++ + D++ P + +
Sbjct: 189 ---------RINSK--RMMNAIKES----YDYN-----PNKTNRPFISQKIHFP 222
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 26/228 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH L + P L+S S D+ + LW++ + + E H V
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---EGHRDEVLSA 167
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ L S G D L +W + + + +K +NP
Sbjct: 168 DYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------DYNPNKTNR---PFISQ 217
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
+ D H V V W + + S + + ++ W ++ D+ +
Sbjct: 218 KIHFPD-------FSTRDIHRNYVDCVRWLGDL---ILSKSCENAIVCWKPGKMEDDIDK 267
Query: 342 LDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
+ + +L + I FS + + + VW
Sbjct: 268 IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-NQVGKLYVW 314
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 54/243 (22%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
++GH E + G ++S D+ + LW +++ M+ + +
Sbjct: 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRM------MNAIKESYDYNPN 208
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ ++ D T H V+ + + ++ + S +
Sbjct: 209 KTN---------RPFISQKIHFPDFSTRD------IHRNYVDCVRWLGD---LILSKSCE 250
Query: 281 TTVALFDMRKMTVP-------------LHILSSHTEEVFQVEWDPNHE-TVLASSADDRR 326
+ + KM L +++ + + + +LA +
Sbjct: 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310
Query: 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS--WNKNDPWVISSVADDNTV 384
L VWDL + ED + HK + ++++ +I+ V DD ++
Sbjct: 311 LYVWDL----------EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA-VCDDASI 359
Query: 385 QVW 387
W
Sbjct: 360 WRW 362
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 47/194 (24%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+K ++P K KI D S + H + V+ V
Sbjct: 199 IKES------YDYNPNKT---NRPFISQKIHFPDFSTR------------DIHRNYVDCV 237
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--------------QRVKAHEKEVNYLSFN 267
W L S + ++ W + R + ++ Y+ F+
Sbjct: 238 RWLGD---LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294
Query: 268 PYNEW--VLATASSDTTVALFDMR---KMTVPLHILSSHTEE--VFQVEWDPNHETVLAS 320
+ W +LA + + ++D+ L+ H + Q + + ++L +
Sbjct: 295 M-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD-SSILIA 352
Query: 321 SADDRRLMVWDLNR 334
DD + WD R
Sbjct: 353 VCDDASIWRWDRLR 366
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
R + + + +S L G+ K+ +WD+ K + + +
Sbjct: 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIR 339
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWD 244
S+ ++ ++ + DD + WD
Sbjct: 340 QTSFS-RDSSILIAVCDDASIWRWD 363
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-21
Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 20/235 (8%)
Query: 163 KGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ +W+ + + +++++ +++ S +V H + H V V
Sbjct: 5 SFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQV----HELKEHNGQVTGV 58
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASS 279
W + N + G D +W L+ + + + + + P NE A S
Sbjct: 59 DWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSG 116
Query: 280 DTTVALFDM---RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
+++ V HI V ++W PN LA+ + D + ++
Sbjct: 117 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKE 175
Query: 337 DEQLELDAEDGPP----ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
E+ G EL+F + ++ N V V+ D+TV +
Sbjct: 176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVSHDSTVCLA 229
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 29/193 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LK H+ + G+ W+P +V+ D +W + V V
Sbjct: 48 LKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPT----LVILRINRAARCV 102
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLATA 277
W NE F + I K V L ++P + LA
Sbjct: 103 RWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAG 160
Query: 278 SSDTTVALFDMRKMTV-----------------PLHILSSHTEEVFQVEWDPNHETVLAS 320
S D +F V + SS V V + N +A
Sbjct: 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAW 219
Query: 321 SADDRRLMVWDLN 333
+ D + + D +
Sbjct: 220 VSHDSTVCLADAD 232
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 41/253 (16%), Positives = 71/253 (28%), Gaps = 40/253 (15%)
Query: 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217
P L + ++ + W+P E GS I + ++ H+ + S
Sbjct: 88 PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFE--QENDWWVCKHIKKPIRST 144
Query: 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA------------------HEK 259
V + WH + L + D + I+ + ++R
Sbjct: 145 VLSLDWHPNSVLLA-AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 203
Query: 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319
V+ + F+ +A S D+TV L D K + + L+S T + V + V A
Sbjct: 204 WVHGVCFSANGSR-VAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESSLVAA 261
Query: 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379
L +D +L S GG S
Sbjct: 262 GHDCFPVLFTYD---SAAGKL-------------SFGGRLDVPKQSSQRGLTARERFQNL 305
Query: 380 DDNTVQVWQMTDS 392
D
Sbjct: 306 DKKASSEGSAAAG 318
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 5e-19
Identities = 32/255 (12%), Positives = 58/255 (22%), Gaps = 38/255 (14%)
Query: 149 AEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDA 207
E++ D K L W P L +GS D K ++ ++
Sbjct: 125 FEQENDWWVCKHIKKPIRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182
Query: 208 ------------MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
M + V V + N + D + + D +
Sbjct: 183 TPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLA 241
Query: 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315
+ + ++F + +A V LF + Q
Sbjct: 242 SETLPLLAVTFITESSL-VAAGHDCFPV-LFTYDSAA-GKLSFGGRLDVPKQSSQRGLTA 298
Query: 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW---NKNDP 372
+ D + L HK +S S K
Sbjct: 299 RERFQNLDKKASSEGSAAA--GAGL--------------DSLHKNSVSQISVLSGGKAKC 342
Query: 373 WVISSVADDNTVQVW 387
+ D + +W
Sbjct: 343 SQFCTTGMDGGMSIW 357
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 17/176 (9%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+G+ +S G + SHD+ +CL D + + +
Sbjct: 198 SSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADADKKMA------VATLASETLPLLA 249
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
V++ ++ + +AG DC +++ + + S + D
Sbjct: 250 VTFITESSLV--AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG-LTARERFQNLD 306
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN---HETVLASSADDRRLMVWDLN 333
+ L L H V Q+ + ++ D + +WD+
Sbjct: 307 KKASSEGSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 22/234 (9%)
Query: 162 LKGHDKEGYGLSWSP-FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH + + P F +VS S D I +WD + H V+D
Sbjct: 104 LSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDF------ERTLKGHTDSVQD 155
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+S+ L S D + +WD + + + + H+ V+ +S P N + +AS D
Sbjct: 156 ISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRD 213
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
T+ +++++ + + H E V V + + T++AS ++D+ + VW + + +
Sbjct: 214 KTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVAT-KECKA 270
Query: 341 ELDAEDGP-------PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
EL PE +S K P+++S + D T+++W
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKTIKMW 323
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ GHD +S P G ++VS S D I +W+V + + H V
Sbjct: 188 MHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYC------VKTFTGHREWVRM 239
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV------- 273
V + + L S +D + +W + T + + ++ H V +S+ P + +
Sbjct: 240 VRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 274 ------------LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321
L + S D T+ ++D+ + L L H V V + + S
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSG-GKFILSC 356
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
ADD+ L VWD L+ H+ ++ ++K P+V++ + D
Sbjct: 357 ADDKTLRVWDYKN-KRCMKTLN-------------AHEHFVTSLDFHKTAPYVVTG-SVD 401
Query: 382 NTVQVWQ 388
TV+VW+
Sbjct: 402 QTVKVWE 408
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
LKGH +S+ G L S S D I LWD + H+ V
Sbjct: 146 LKGHTDSVQDISFDH--SGKLLASCSADMTIKLWDFQGFEC------IRTMHGHDHNVSS 197
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
VS + N + SA D + +W+++T + H + V + N + ++A+ S+D
Sbjct: 198 VSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSND 255
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV-------------------LASS 321
TV ++ + L H V + W P L S
Sbjct: 256 QTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
+ D+ + +WD++ G + L GH + ++ +++ S ADD
Sbjct: 315 SRDKTIKMWDVST-GMCLMTLV-------------GHDNWVRGVLFHSGGKFIL-SCADD 359
Query: 382 NTVQVW 387
T++VW
Sbjct: 360 KTLRVW 365
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 31/191 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
GH + + + +G + S S+D + +W V+ H VVE
Sbjct: 230 FTGHREWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKEC------KAELREHRHVVEC 281
Query: 221 VSWHLKNENLFG-------------------SAGDDCQLMIWDLRTNQTQQRVKAHEKEV 261
+SW ++ S D + +WD+ T + H+ V
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321
+ F+ ++ + + + D T+ ++D K + L++H V +++ + +
Sbjct: 342 RGVLFHSGGKF-ILSCADDKTLRVWDY-KNKRCMKTLNAHEHFVTSLDFHKT-APYVVTG 398
Query: 322 ADDRRLMVWDL 332
+ D+ + VW+
Sbjct: 399 SVDQTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 26/204 (12%)
Query: 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW 243
W + H S V V +H ++ SA +D + +W
Sbjct: 84 PLGQKRDPKEWIPRP-------PEKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVW 135
Query: 244 DLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE 303
D T ++ +K H V +SF+ + LA+ S+D T+ L+D + + + H
Sbjct: 136 DYETGDFERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGFE-CIRTMHGHDH 193
Query: 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS 363
V V PN + + S++ D+ + +W++ G GH+ +
Sbjct: 194 NVSSVSIMPNGDH-IVSASRDKTIKMWEVQT-GYCVKTFT-------------GHREWVR 238
Query: 364 DFSWNKNDPWVISSVADDNTVQVW 387
N++ + S ++D TV+VW
Sbjct: 239 MVRPNQDGTLIASC-SNDQTVRVW 261
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 27/147 (18%)
Query: 162 LKGHDKEGYGLSWSP------------------FKEG-YLVSGSHDNKICLWDVSALAQD 202
L+ H +SW+P K G +L+SGS D I +WDVS
Sbjct: 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC- 330
Query: 203 KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262
+ H++ V V +H + + S DD L +WD + + + + AHE V
Sbjct: 331 -----LMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 263 YLSFNPYNEWVLATASSDTTVALFDMR 289
L F+ + T S D TV +++ R
Sbjct: 385 SLDFHK-TAPYVVTGSVDQTVKVWECR 410
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
G G W R + + + H V + F+P + +AS D T+ ++D
Sbjct: 83 GPLGQKRDPKEWIPRPPE-KYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETG 140
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351
L HT+ V + +D + + LAS + D + +WD + +
Sbjct: 141 D-FERTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQG-FECIRTMH-------- 189
Query: 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
GH +S S N ++S+ + D T+++W
Sbjct: 190 -----GHDHNVSSVSIMPNGDHIVSA-SRDKTIKMW 219
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 26/224 (11%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
G G + W + V I ++ + + H + + +
Sbjct: 204 GDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQI---TEKTPT---GKLIGHHGPISVLEF 255
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283
+ N+ L SA DD L IW +Q H + + S+ ++ + + S D +V
Sbjct: 256 NDTNKLLL-SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK--VISCSMDGSV 312
Query: 284 ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343
L+ +++ L + +F + + A + D ++ V+DL ++ + L
Sbjct: 313 RLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVNVYDLKKLNSKSRSLY 370
Query: 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
G++ I + SS +D +
Sbjct: 371 -------------GNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 20/175 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH L ++ L+S S D + +W + + H +
Sbjct: 243 LIGHHGPISVLEFND--TNKLLLSASDDGTLRIWHG---GNGNSQ---NCFYGHSQSIVS 294
Query: 221 VSW----HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276
SW + S D + +W L+ N + + + A
Sbjct: 295 ASWVGDDKV------ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK-YAV 347
Query: 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
A D V ++D++K+ L + + + P + + +S +D +
Sbjct: 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 33/261 (12%), Positives = 78/261 (29%), Gaps = 48/261 (18%)
Query: 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKV-------------- 204
L+ +W+P E L G ++ L + Q+
Sbjct: 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP 97
Query: 205 IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264
+ V ++W + N + ++ +L +W+ +T + H + +
Sbjct: 98 FALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV 155
Query: 265 SFNPYNEWVLATASSDTTVALFDMR--------------KMTVPLHILSSHTEEVFQVEW 310
+N + + + L+++ ++ S VEW
Sbjct: 156 KWNKDGTH-IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214
Query: 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370
+ + V+ + +L GH IS +N
Sbjct: 215 VDD--DKFVIPGPKGAIFVYQITE-KTPTGKLI-------------GHHGPISVLEFNDT 258
Query: 371 DPWVISSVADDNTVQVWQMTD 391
+ ++S+ +DD T+++W +
Sbjct: 259 NKLLLSA-SDDGTLRIWHGGN 278
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
++ D V + + + W+P E++LA + + +
Sbjct: 18 TQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVE 77
Query: 335 IGDEQLELDAED------GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
E + P L S G +++ +W+ + +++ ++ +++W
Sbjct: 78 TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG-VENGELRLWN 136
Query: 389 MT 390
T
Sbjct: 137 KT 138
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 21/233 (9%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
D + +SP +G +L +G+ D I +WD+ + + + HE +
Sbjct: 119 SPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKI------VMILQGHEQDIYS 170
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ + + + S D + IWDLRT Q + E V ++ +P + +A S D
Sbjct: 171 LDYF-PSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 228
Query: 281 TTVALFD------MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
V ++D + ++ + H + V+ V + + ++ + S + DR + +W+L
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQN 287
Query: 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
++ G E+ + GHK + + +ND +++S + D V W
Sbjct: 288 ANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSG-SKDRGVLFW 337
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 50/241 (20%), Positives = 93/241 (38%), Gaps = 32/241 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDV------------SALAQDKVIDAM 208
H + +S +G YL +G + ++ V SA +D
Sbjct: 60 SLDHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268
+ + + V + + + +D + IWD+ + ++ HE+++ L + P
Sbjct: 117 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328
+ L + S D TV ++D+R L S + V V P +A+ + DR +
Sbjct: 176 -SGDKLVSGSGDRTVRIWDLRTGQ-CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQV 386
VWD G LD+E+ GHK + F+ D + S + D +V++
Sbjct: 233 VWDSET-GFLVERLDSENESGT------GHKDSVYSVVFT---RDGQSVVSGSLDRSVKL 282
Query: 387 W 387
W
Sbjct: 283 W 283
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 48/250 (19%), Positives = 90/250 (36%), Gaps = 49/250 (19%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L+GH+++ Y L + P G LVSGS D + +WD+ + V
Sbjct: 161 LQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQC------SLTLSIEDGVT-T 211
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-------VKAHEKEVNYLSFNPYNEWV 273
V+ + + D + +WD T +R H+ V + F +
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS- 270
Query: 274 LATASSDTTVALFDMRKMTVP-----------LHILSSHTEEVFQVEWDPNHETVLASSA 322
+ + S D +V L++++ H + V V N E + S +
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGS 329
Query: 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKI-----SDFSWNKNDPWVISS 377
DR ++ WD + G+ L L GH+ + ++ S + V ++
Sbjct: 330 KDRGVLFWDK-KSGNPLLMLQ-------------GHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 378 VADDNTVQVW 387
+ D ++W
Sbjct: 376 GSGDCKARIW 385
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 40/246 (16%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDA-MHVYEAHESVV 218
+ H K + + + + A + ID +H H SVV
Sbjct: 10 QRANHSKPIPPFLLDL--DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 67
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH------EKEVNYLSFNPYNEW 272
V + + + + ++ + R+ + +N S + +
Sbjct: 68 CCVKFS-NDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 273 V-----------LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321
+ LAT + D + ++D+ + IL H ++++ +++ P+ + L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDK-LVSG 183
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
+ DR + +WDL G L L EDG + S G D I++ + D
Sbjct: 184 SGDRTVRIWDLRT-GQCSLTLSIEDGVTTVAVSPG--------------DGKYIAAGSLD 228
Query: 382 NTVQVW 387
V+VW
Sbjct: 229 RAVRVW 234
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 24/192 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA-MHVYEAHESVVED 220
L D ++ SP Y+ +GS D + +WD + +D+ H+ V
Sbjct: 203 LSIEDGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA------------HEKEVNYLSFNP 268
V + ++ S D + +W+L+ + K H+ V ++
Sbjct: 262 VVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 320
Query: 269 YNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHE-----TVLASSA 322
+E+ + + S D V +D + + PL +L H V V V A+ +
Sbjct: 321 NDEY-ILSGSKDRGVLFWDKK--SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377
Query: 323 DDRRLMVWDLNR 334
D + +W +
Sbjct: 378 GDCKARIWKYKK 389
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 9e-12
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 157 DPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDA------MH 209
+ GH Y + ++ +G +VSGS D + LW++
Sbjct: 247 SENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269
Y H+ V V+ +E + S D ++ WD ++ ++ H V ++
Sbjct: 305 TYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 270 NEWV-----LATASSDTTV 283
+ AT S D
Sbjct: 364 SSLGPEYNVFATGSGDCKA 382
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
GH ++ + Y++SGS D + WD + + + + H + V
Sbjct: 306 YIGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSGNP------LLMLQGHRNSVIS 357
Query: 221 VSWHLK-----NENLFGSAGDDCQLMIWDLRTNQ 249
V+ N+F + DC+ IW +
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 3e-19
Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 35/227 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH LS+ G ++SGS D +W +L ++ +AH + V D
Sbjct: 100 LIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEGSL--------VYNLQAHNASVWDA 148
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSD 280
+EN F +A D + +W ++ + H V +L+ + S+D
Sbjct: 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSND 204
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
+ L DM L H V+ ++ PN + + S +DR + +W
Sbjct: 205 GLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIW---------- 251
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
E+G L I N ++ S DN V+++
Sbjct: 252 --SKENG--SLKQVITLPAISIWSVDCMSNGDIIVGS--SDNLVRIF 292
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-17
Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 45/238 (18%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
LKGHD++ + + + S S D + LW V + + V
Sbjct: 14 LKGHDQDVRDVVAVD--DSKVASVSRDGTVRLWSKDDQWL------GTVVYTGQGFLNSV 65
Query: 222 SWHLKNENLFGSAGDDC---QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ + L G D + ++ + H+ V LSF V+ + S
Sbjct: 66 CYD-SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG---VVISGS 121
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEW---DPNHETVLASSADDRRLMVWDLNRI 335
D T ++ ++ L +H V+ + N +++ D+ + +W
Sbjct: 122 WDKTAKVWKEGS---LVYNLQAHNASVWDAKVVSFSENK---FLTASADKTIKLWQ---N 172
Query: 336 GDEQLELDAEDGPP--ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
L GH S ++D +++ M
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGH----------------FISCSNDGLIKLVDMHT 214
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 5e-16
Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVED 220
L+ H+ + F E ++ S D I LW + + + H VV
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--------IKTFSGIHNDVVRH 189
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
++ ++ F S +D + + D+ T + + HE V + P + + + D
Sbjct: 190 LAVV--DDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD--IVSCGED 245
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
TV ++ ++ +++ ++ V+ N + + + D + ++
Sbjct: 246 RTVRIWSKENGSL-KQVITLPAISIWSVDCMSNGDII--VGSSDNLVRIFSQE 295
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+GH+ Y + P G +VS D + +W + V + V
Sbjct: 221 YEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWSKENGSL------KQVITLPAISIWSV 272
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEKEV 261
N ++ D + I+ ++ ++ +K +
Sbjct: 273 DCM-SNGDII-VGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 28/248 (11%)
Query: 152 QQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY 211
L + Y + L + + W +
Sbjct: 64 NFVSPKGFNSLNLKLSQKYPKLSQQDRL-RLSFLENIFILKNWYNPKFVPQR-----TTL 117
Query: 212 EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
H + V +N + DD + ++D + ++ H+ V L +
Sbjct: 118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG- 174
Query: 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEV--FQVEWDPNHETVLASSADDRRLMV 329
+L + S+D TV ++D++K H+ H V + N + + + + D L V
Sbjct: 175 -ILVSGSTDRTVRVWDIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHV 231
Query: 330 WDLNRIGDEQLELDAEDGPPELLFSHG----------GHKAKISDFSWNKNDPWVISSVA 379
W L + + E P + + GH A + S + N ++ S +
Sbjct: 232 WKLPK-ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN---IVVSGS 287
Query: 380 DDNTVQVW 387
DNT+ VW
Sbjct: 288 YDNTLIVW 295
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 7e-18
Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 50/248 (20%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GHD + L ++ G LVSGS D + +WD+ HV+E H S V +
Sbjct: 158 LSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCC------THVFEGHNSTVRCL 209
Query: 222 S-WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE--------- 271
KN + D L +W L E + + P
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKES-SVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 272 ---WV---------LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319
V + + S D T+ ++D+ +M L+ILS HT+ ++ +D +
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKR-CI 326
Query: 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379
S++ D + +WDL G+ L GH A + + S A
Sbjct: 327 SASMDTTIRIWDLEN-GELMYTLQ-------------GHTALVGLLRL---SDKFLVSAA 369
Query: 380 DDNTVQVW 387
D +++ W
Sbjct: 370 ADGSIRGW 377
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 15/173 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH Y + + +S S D I +WD+ M+ + H ++V +
Sbjct: 306 LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL------MYTLQGHTALVGLL 358
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ SA D + WD ++ H +F ++ +L + S+
Sbjct: 359 RL---SDKFLVSAAADGSIRGWDANDYS-RKFSYHHTNLSAITTFYV-SDNILVS-GSEN 412
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM-VWDLN 333
++++R + + ++++ V + V A D + + + D +
Sbjct: 413 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDFS 464
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 53/250 (21%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y+++G+ D I ++D + H+ V +
Sbjct: 117 LRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKF------LLQLSGHDGGVWAL 168
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS--FNPYNEWVLATASS 279
+ + + S D + +WD++ + H V L N + T S
Sbjct: 169 KY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSR 225
Query: 280 DTTVALFDMRK----------------------MTVPLHILSSHTEEVFQVEWDPNHETV 317
D T+ ++ + K + +L H V V N
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI--- 282
Query: 318 LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377
+ S + D L+VWD+ + L GH +I ++ IS+
Sbjct: 283 VVSGSYDNTLIVWDVAQ-MKCLYILS-------------GHTDRIYSTIYDHERKRCISA 328
Query: 378 VADDNTVQVW 387
+ D T+++W
Sbjct: 329 -SMDTTIRIW 337
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH +S +VSGS+DN + +WDV+ + +++ H +
Sbjct: 266 LRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKC------LYILSGHTDRIYST 316
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ + + SA D + IWDL + ++ H V L + L +A++D
Sbjct: 317 IYDHERKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADG 372
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
++ +D HT + + + +L S +++ + +++L
Sbjct: 373 SIRGWDA--NDYSRKFSYHHTNLSAITTFYVS-DNILVSGSEN-QFNIYNLR 420
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS 299
L+ + + + + + + L+ + + + K L
Sbjct: 60 LISENFVSPKGFNSLNLKLSQKYPKLSQQ-DRLRLSFLENIFILKNWYNPKFVPQRTTLR 118
Query: 300 SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359
H V + + + ADD+ + V+D L+L GH
Sbjct: 119 GHMTSVITCLQ--FEDNYVITGADDKMIRVYDSIN-KKFLLQLS-------------GHD 162
Query: 360 AKIS--DFSWNKNDPWVISSVADDNTVQVW 387
+ ++ ++ S + D TV+VW
Sbjct: 163 GGVWALKYAHGG----ILVSGSTDRTVRVW 188
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 23/238 (9%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
R GH E Y +++SP + ++S + +I LW++ + + E H V
Sbjct: 113 RFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSSAE----KENHSDWVS 166
Query: 220 DVSW---------HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270
V + F S G D +L +W+ Q + KAHE VN+LS +P
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNG 225
Query: 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
++ +AT D + ++D+ +T + Q+ ++P + V + D+ + ++
Sbjct: 226 KY-IATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAFNPKLQWVAVGT--DQGVKIF 281
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+L + E P G + + +WN + + D ++ +
Sbjct: 282 NLM-TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG-FTDGVIRTFS 337
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 7e-18
Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 58/254 (22%)
Query: 162 LKGHDKEGYGLSWSPFKEG-----YLVSGSHDNKICLWDVSALAQDKVI-DAMHVYEAHE 215
L+GH + ++ L+SGS D + +W + Q+ H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275
V D++ + S+ D L +WDLRT T +R H+ EV ++F+P N +
Sbjct: 77 HFVSDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ-IL 134
Query: 276 TASSDTTVALFDMR-KMTVPLHILSSHTEEVFQVEWDPNHETV---------LASSADDR 325
+A ++ + L+++ + +H++ V V + P ++ AS D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA------ 379
RL VW+ N ++ ++ H++ V + ++
Sbjct: 195 RLKVWNTNF---------------QIRYTFKAHES------------NV-NHLSISPNGK 226
Query: 380 ------DDNTVQVW 387
D + +W
Sbjct: 227 YIATGGKDKKLLIW 240
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 43/254 (16%), Positives = 91/254 (35%), Gaps = 40/254 (15%)
Query: 146 AKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKV 204
+ E+ P L GH+ L+ S E + +S S D + LWD+
Sbjct: 56 LYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTT--- 110
Query: 205 IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKAHEKEVN 262
+ H+S V V++ N + SAG + ++ +W++ + + H V+
Sbjct: 111 ---YKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAEKENHSDWVS 166
Query: 263 YLSFNP---------YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313
+ ++P A+ D + +++ + +H V + PN
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPN 224
Query: 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373
+ +A+ D++L++WD+ + I+ ++N W
Sbjct: 225 GKY-IATGGKDKKLLIWDILN-LTYPQREF-------------DAGSTINQIAFNPKLQW 269
Query: 374 VISSVADDNTVQVW 387
V D V+++
Sbjct: 270 VAV--GTDQGVKIF 281
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 32/192 (16%)
Query: 162 LKGHDKEGYGLSWSP---------FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE 212
+ H + +SP Y S D ++ +W+ + + ++
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-------QIRYTFK 210
Query: 213 AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272
AHES V +S N + G D +L+IWD+ QR +N ++FNP +W
Sbjct: 211 AHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQW 269
Query: 273 VLATASSDTTVALFD------------MRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320
+A +D V +F+ + + + W+ + L +
Sbjct: 270 -VAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFA 326
Query: 321 SADDRRLMVWDL 332
D + +
Sbjct: 327 GFTDGVIRTFSF 338
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 46/226 (20%)
Query: 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE-----NLFGSAGDDCQL 240
+ ++ + + V + E H V + + + S D +
Sbjct: 2 ADNSSLDIQVVKR----------GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTV 51
Query: 241 MIWDLRTNQT-------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293
MIW L + + + H V+ L+ + N + ++S D T+ L+D+R T
Sbjct: 52 MIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTLRLWDLRTGT- 109
Query: 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353
H EV+ V + P++ + S+ +R + +W +
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLW------------NILGECKFSSA 156
Query: 354 SHGGHKAKISD--FS-------WNKNDPWVISSVADDNTVQVWQMT 390
H +S +S + +SV D ++VW
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVS 197
KG + + L+W+ G L +G D I +
Sbjct: 305 QKGKNPQCTSLAWNA--LGKKLFAGFTDGVIRTFSFE 339
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 32/252 (12%), Positives = 80/252 (31%), Gaps = 31/252 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVI--------------- 205
L GH ++ G ++S S D I LW+
Sbjct: 177 LIGHRATVTDIAIID--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 206 ---DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEV 261
++E S ++ + + + + ++ + QT Q
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 293
Query: 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEWDPNHETVLAS 320
N L+ + N + + +A +D+R P+ L + + V + + S
Sbjct: 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAG--ALFVS 351
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELL-FSHGGHKAKISDFSWNKNDPWVISSVA 379
S D + + ++ + + + P L+ + S ++++ V+
Sbjct: 352 SGFDTSIKLDIISD-PESERPAIEFETPTFLVSNDDAVSQFCYV--SDDESNGEVLEV-G 407
Query: 380 DDNTVQVWQMTD 391
+N ++ +++
Sbjct: 408 KNNFCALYNLSN 419
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 35/243 (14%), Positives = 81/243 (33%), Gaps = 30/243 (12%)
Query: 160 LRLKGHDKE---GYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215
+ + G+ + G G ++ G +L D L++ K+
Sbjct: 47 IVVLGNSRGVDAGKGNTFEK--VGSHLYKARLDGHDFLFNTIIRDGSKM-------LKRA 97
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275
+ L F + + + D N ++ +AH E+ L F P + L
Sbjct: 98 DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALI 155
Query: 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
++S D + ++ ++ + L H V + + S++ D + +W+
Sbjct: 156 SSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGT- 212
Query: 336 GDEQLELDAEDGPPELLFS-----------HGGHKAKISDFSWNKNDPWVISSVADDNTV 384
G + ++ P + + S H +K ++ + +VI+ +
Sbjct: 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG-HVSGVI 271
Query: 385 QVW 387
V
Sbjct: 272 TVH 274
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 30/228 (13%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 164 GHDKEGYGLSWSP-FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE---SVVE 219
K FK ++ + +N + +++ + V + +
Sbjct: 3 HMTKTITVAHIQYDFKA--VLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGK 60
Query: 220 DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS 279
++ K + A D +++ ++ + ++
Sbjct: 61 GNTFE-KVGSHLYKARLDGHDFLFNTIIRD-GSKMLKRADYTAVDTAKLQMRR-FILGTT 117
Query: 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339
+ + + D I +H E+ ++++ P+ L SS+ D +L +W
Sbjct: 118 EGDIKVLDSNFNL-QREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIW--------- 166
Query: 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+DG + GH+A ++D + V+S+ + D T+++W
Sbjct: 167 ---SVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSA-SLDGTIRLW 208
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 4e-18
Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 31/244 (12%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH + + Y V+GS D I LWDVS V+
Sbjct: 70 LDGHTGTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCVATWK-------SPVPVKR 120
Query: 221 VSWHLKNENL-FGS---AGDDCQLMIWDLRTNQTQQRVKAHEKE-------------VNY 263
V + + + I+++ + + +E
Sbjct: 121 VEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
++ ++ + D ++ +D+ + + H + + +++ P+ T +S+
Sbjct: 181 AGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD-LTYFITSSR 238
Query: 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383
D + D++ + + + + + I D S+
Sbjct: 239 DTNSFLVDVST-LQVLKKYETDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFE 296
Query: 384 VQVW 387
+ +
Sbjct: 297 ARFY 300
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 16/210 (7%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
H + L+ + + HE + V ++ + + LF S D
Sbjct: 5 HHHHHHSSGENLYFQGSHMK------AIKLTGHERPLTQVKYNKEGDLLF-SCSKDSSAS 57
Query: 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301
+W + + H + + + + ++ T S+D ++ L+D+ + S
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADYSIKLWDVSNGQ-CVATWKSP 115
Query: 302 TEEVFQVEWDPNHETVLASSAD----DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357
V +VE+ P LA + + ++++ R EL P
Sbjct: 116 V-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER-DSATHELTKVSEEPIHKIITHE 173
Query: 358 HKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ W+ ++I+ D + +
Sbjct: 174 GLDAATVAGWSTKGKYIIAG-HKDGKISKY 202
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 33/246 (13%), Positives = 81/246 (32%), Gaps = 44/246 (17%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
++L GH++ + ++ EG L S S D+ +W + + + H +
Sbjct: 26 IKLTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGER------LGTLDGHTGTI 77
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ + D + +WD+ Q V + F+P +
Sbjct: 78 WSIDVD-CFTKYCVTGSADYSIKLWDVSNGQ-CVATWKSPVPVKRVEFSPCGNY-FLAIL 134
Query: 279 SDT-----TVALFDMRK----------MTVPLHILSSHTEE--VFQVEWDPNHETVLASS 321
+ ++ ++++ + P+H + +H W + + +
Sbjct: 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAG 193
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
D ++ + D + E + S H+ ISD ++ + + I+S + D
Sbjct: 194 HKDGKISKY------------DVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITS-SRD 239
Query: 382 NTVQVW 387
+
Sbjct: 240 TNSFLV 245
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 45/234 (19%)
Query: 181 YLVSGS-----HDNKICLWDVSALAQDKVIDAMH-------VYEAHESVVEDVSWHLKNE 228
Y ++ + I ++++ + + + + W K +
Sbjct: 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188
Query: 229 NLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD 287
+ + D ++ +D+ N + HEK ++ + F+P + T+S DT L D
Sbjct: 189 YII-AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVD 246
Query: 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL-DAED 346
+ + V L + + P E ++ + + + G +
Sbjct: 247 VSTLQV-LKKYETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304
Query: 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVA------------DDNTVQVWQ 388
E + GH F +++VA +D +++
Sbjct: 305 E--EEIGRVQGH------FGP-------LNTVAISPQGTSYASGGEDGFIRLHH 343
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 9e-13
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 24/143 (16%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
+ H+K + +SP + Y ++ S D L DVS L + YE +
Sbjct: 214 IDLHEKSISDMQFSP--DLTYFITSSRDTNSFLVDVSTLQV------LKKYETDCPL-NT 264
Query: 221 VSWH-------------LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
K+ + + + + RV+ H +N ++ +
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324
Query: 268 PYNEWVLATASSDTTVALFDMRK 290
P A+ D + L K
Sbjct: 325 P-QGTSYASGGEDGFIRLHHFEK 346
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 53/298 (17%), Positives = 96/298 (32%), Gaps = 61/298 (20%)
Query: 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR----------LKGHDK 167
+ MP P + + + + + ++ H
Sbjct: 324 AQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTD 383
Query: 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN 227
++ +VS S D I LW ++ A H VEDV +
Sbjct: 384 MVTAIATPIDNADIIVSASRDKSIILWKLTK-DDKAYGVAQRRLTGHSHFVEDVVLS-SD 441
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD 287
S D +L +WDL + +R H K+V ++F+ N + +AS D T+ L++
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWN 500
Query: 288 -----MRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNRIGDEQLE 341
++ H + V V + PN + S++ D+ + VW
Sbjct: 501 TLGECKYTISEGGE---GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW----------- 546
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA------------DDNTVQVW 387
+ + +L + GH +V S+VA D V +W
Sbjct: 547 -NLSNC--KLRSTLAGHTG------------YV-STVAVSPDGSLCASGGKDGVVLLW 588
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 32/242 (13%)
Query: 161 RLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVE 219
R GH K+ +++S + +VS S D I LW+ + + + E H V
Sbjct: 467 RFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGG---EGHRDWVS 521
Query: 220 DVSW-HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
V + + SA D + +W+L + + + H V+ ++ +P A+
Sbjct: 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGG 580
Query: 279 SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338
D V L+D+ + L+ L +++ + + + PN + +A + + +WDL
Sbjct: 581 KDGVVLLWDLAEGK-KLYSLEANSV-IHALCFSPNRYWL--CAATEHGIKIWDLE-SKSI 635
Query: 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA------------DDNTVQV 386
+L + + G A + +S+ D ++V
Sbjct: 636 VEDLKVDLKAEAEKADNSGPAATKRKVIY-------CTSLNWSADGSTLFSGYTDGVIRV 688
Query: 387 WQ 388
W
Sbjct: 689 WG 690
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 38/174 (21%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L GH ++ SP +G SG D + LWD++ + ++ EA+ SV+
Sbjct: 557 LAGHTGYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEGKK------LYSLEAN-SVIHA 607
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ + L A + + IWDL + + +K K + N
Sbjct: 608 LCFSPNRYWL--CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS------------ 653
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334
+ W + T L S D + VW + R
Sbjct: 654 -------------GPAATKRKVIYCTSLNWSADGST-LFSGYTDGVIRVWGIGR 693
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 7e-17
Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 35/232 (15%)
Query: 162 LKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L Y L+ SP + S D I +WD+ + ++ H
Sbjct: 137 LTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTL------VRQFQGHTDGASC 188
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ L+ + G D + WDLR + Q + ++ L + P EW LA
Sbjct: 189 IDISNDGTKLW-TGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEW-LAVGMES 245
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
+ V + + + L H V +++ + S+ D L W
Sbjct: 246 SNVEVLHVN--KPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWR--------- 293
Query: 341 ELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVWQMT 390
G + + D S D I + + D V+++
Sbjct: 294 ---TPYGASIFQS---KESSSVLSCDIS---VDDKYIVTGSGDKKATVYEVI 336
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 30/231 (12%)
Query: 159 DLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217
L D P +G L+ G + + +WD++A +
Sbjct: 90 QLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPA 143
Query: 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277
++ ++ F S D + +WDL ++ + H + + + L T
Sbjct: 144 CYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK-LWTG 201
Query: 278 SSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
D TV +D+R L T ++F + + P E LA + + V +N+
Sbjct: 202 GLDNTVRSWDLR--EGRQLQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD 257
Query: 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
QL H++ + + W +S+ DN + W
Sbjct: 258 KYQLH---------------LHESCVLSLKFAYCGKWFVST-GKDNLLNAW 292
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 2e-15
Identities = 43/239 (17%), Positives = 72/239 (30%), Gaps = 37/239 (15%)
Query: 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216
D + K Y + + V D I Q ++ H
Sbjct: 1 DY-FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-------HGE 52
Query: 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-----HEKEVNYLSFNPYNE 271
VV V+ + G C + +WD+ + V + + P
Sbjct: 53 VVCAVTIS-NPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110
Query: 272 WVLATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
L +T++++D+ T + L+S + + P+ V S D + VW
Sbjct: 111 T-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVW 168
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS--DFSWNKNDPWVISSVADDNTVQVW 387
DL + GH S D S ND + + DNTV+ W
Sbjct: 169 DL-HNQTLVRQFQ-------------GHTDGASCIDIS---NDGTKLWTGGLDNTVRSW 210
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 7e-10
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 160 LRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVV 218
L+ + + L + P G +L G + + + V+ + + HES V
Sbjct: 218 LQQHDFTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCV 268
Query: 219 EDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS 278
+ + F S G D L W + + K V + +++ + T S
Sbjct: 269 LSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKY-IVTGS 325
Query: 279 SDTTVALFDM 288
D ++++
Sbjct: 326 GDKKATVYEV 335
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 2e-16
Identities = 43/267 (16%), Positives = 92/267 (34%), Gaps = 26/267 (9%)
Query: 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKI 191
++ S Y Q+ + + D L+ +++ + W P K + ++D I
Sbjct: 63 IQSHSRGEYNVYSTFQSHEPEFDY---LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119
Query: 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ 251
LW +S + + + D + D + R
Sbjct: 120 KLWKISERDKRPEGYNLKE---EDGRYRDPTTVTTLRVPV-FRPMDLMVEASPRRIFAN- 174
Query: 252 QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK-------MTVPLHILSSHTEE 304
AH +N +S N E L ++ D + L+ + + + + TE
Sbjct: 175 ----AHTYHINSISINSDYETYL--SADDLRINLWHLEITDRSFNIVDIKPANMEELTEV 228
Query: 305 VFQVEWDPNHETVLASSADDRRLMVWDL--NRIGDEQLELDAEDGPPELLFSHGGHKAKI 362
+ E+ PN S+ + + D+ + + D +L E P + I
Sbjct: 229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSI 288
Query: 363 SDFSWNKNDPWVISSVADDNTVQVWQM 389
SD ++ + ++++ D +V+VW +
Sbjct: 289 SDVKFSHSGRYMMT--RDYLSVKVWDL 313
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 4e-12
Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 34/236 (14%)
Query: 181 YLVSGSHDNKICLWD------------------VSALAQDKVIDAMHVYEAHESVVEDVS 222
L +G ++ ++ + + + D + E E + +
Sbjct: 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101
Query: 223 WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN--PYNEWVLATASSD 280
KN F + +D + +W + + ++E V D
Sbjct: 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD 161
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340
V R ++HT + + + ++ET L SADD R+ +W L I D
Sbjct: 162 LMVEASPRRI------FANAHTYHINSISINSDYETYL--SADDLRINLWHL-EITDRSF 212
Query: 341 ELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396
+ D P + I+ ++ N + T+++ M S D
Sbjct: 213 NIV--DIKPA---NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 8e-06
Identities = 27/230 (11%), Positives = 64/230 (27%), Gaps = 56/230 (24%)
Query: 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
++ + + P V S I L D+ A
Sbjct: 221 NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA---------------------- 258
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASS 279
SA D +++ + + + ++ + F+ +++
Sbjct: 259 ------------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRD 304
Query: 280 DTTVALFDMRKMTVPLHILSSHT---------------EEVFQVEWDPNHETVLASSADD 324
+V ++D+ P+ H + F+ W+ + V + + +
Sbjct: 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYN 363
Query: 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374
++D N D LE E+ P + + K++ V
Sbjct: 364 NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV---CASGKRKKDEISV 410
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 30/232 (12%), Positives = 60/232 (25%), Gaps = 57/232 (24%)
Query: 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW 243
G +D + C V D V A ++ V ++ + L + +++I+
Sbjct: 5 GGGNDIQWCFSQVKGAVDDDV--------AEADIISTVEFN-HSGELLATGDKGGRVVIF 55
Query: 244 DLRTNQTQQRVKAHEKE-----------------------VNYLSFNPY-NEWVLATASS 279
Q E +N + + P N +++
Sbjct: 56 QQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115
Query: 280 DTTVALFDM--RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
D T+ L+ + R + L V D +
Sbjct: 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT-LRVPVFRPMDLMVEASPRRIFA- 173
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
H I+ S N + +S+ DD + +W +
Sbjct: 174 ------------------NAHTYHINSISINSDYETYLSA--DDLRINLWHL 205
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 25/189 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ + S G + +G ++ + + ++S L ++ H + + + V
Sbjct: 182 PMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239
Query: 222 SWHLKNENLFGSAGDD---CQLMIWDLRT-------------NQTQQRVKAHEKEVNYLS 265
+ + L A D + +++ +Q AH V LS
Sbjct: 240 KFSPQGSLLA-IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298
Query: 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQ----VEWDPNHETVLASS 321
FN E L +A D + +D++ + L+ H +++ + D + +++
Sbjct: 299 FNDSGET-LCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356
Query: 322 ADDRRLMVW 330
D + +
Sbjct: 357 VFDVKFLKK 365
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 39/206 (18%)
Query: 162 LKGHDKEGYGLSWSPFKEG--YLVSGSHDNKICLWDVSALAQD------------KVIDA 207
+K H S + LV+ +W A + ++
Sbjct: 119 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ------TQQRVKAHEKEV 261
+ V L + ++ + I +L T + +Q + + +
Sbjct: 179 VESPMTPSQFATSVDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236
Query: 262 NYLSFNPYNEWVLATASSDTTVA---------------LFDMRKMTVPLHILSSHTEEVF 306
+ F+P +LA A + L + +H+ V
Sbjct: 237 RSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 307 QVEWDPNHETVLASSADDRRLMVWDL 332
+ ++ + ET L S+ D +L WD+
Sbjct: 296 SLSFNDSGET-LCSAGWDGKLRFWDV 320
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 24/209 (11%), Positives = 59/209 (28%), Gaps = 42/209 (20%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
K HD + + +S + VS S D + +WD L + D + + H+S + V
Sbjct: 12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68
Query: 222 SWHLKNENLFG------------------SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263
E +D + + + +K H
Sbjct: 69 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 128
Query: 264 LSFNPYNEW--VLATASSDTTVALFDMR-----------------KMTVPLHILSSHTEE 304
+ L T ++ ++ + + ++
Sbjct: 129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 188
Query: 305 VFQVEWDPNHETVLASSADDRRLMVWDLN 333
V+ ++A+ ++ + + +L+
Sbjct: 189 ATSVDISER--GLIATGFNNGTVQISELS 215
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 28/147 (19%)
Query: 145 CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDK 203
L H LS++ G L S D K+ WDV +
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLCSAGWDGKLRFWDVKTKER-- 325
Query: 204 VIDAMHVYEAHESVVEDVSWHL---KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260
+ H +E L ++ + G ++D VK +K
Sbjct: 326 ----ITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFD---------VKFLKKG 366
Query: 261 VNYLSFNPYNEWVLATASSDTTVALFD 287
NE L D ++ F
Sbjct: 367 WRSGMGADLNES-LCCVCLDRSIRWFR 392
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 7e-15
Identities = 29/254 (11%), Positives = 75/254 (29%), Gaps = 24/254 (9%)
Query: 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216
P L L + + + D + ++DV +++ +
Sbjct: 93 SPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR--FCFSK 150
Query: 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEW 272
+S + + A + D+ + ++ + H + + ++
Sbjct: 151 RPNAISIAEDDTTVI-IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDG 209
Query: 273 --VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330
+ T+ D + + + + L H V + ++ +L S+ D ++ W
Sbjct: 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDY--LLLSAGGDDKIFAW 267
Query: 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN------------KNDPWVISSV 378
D G D L + + + + KN P+V V
Sbjct: 268 DWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326
Query: 379 ADDNTVQVWQMTDS 392
+ + +M++
Sbjct: 327 EATKCIIILEMSEK 340
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 3e-12
Identities = 31/225 (13%), Positives = 70/225 (31%), Gaps = 28/225 (12%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVI----------DAMHVYEAHESVVEDVSWHLKN 227
++G LV N I + + + A E + +N
Sbjct: 14 RDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN 73
Query: 228 ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD 287
+ L + GD + + + L ++A A SD ++ +FD
Sbjct: 74 KKLKSNKGD--SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFD 131
Query: 288 MR---KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
+ K + L ++ + + T + + + D+N I +E+
Sbjct: 132 VDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT-VIIADKFGDVYSIDINSIPEEKFTQ-- 188
Query: 345 EDGPPELLFSHGGHKAKISD--FSWNKNDPWVISSVADDNTVQVW 387
E + GH + ++D + + I + D +++
Sbjct: 189 -----EPIL---GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS 225
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 25/180 (13%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L GH + + L+S D+KI WD K + + + D
Sbjct: 237 LFGHKHFVSSICCGK--DYLLLSAGGDDKIFAWDWKT---GKNLSTFDYNSLIKPYLNDQ 291
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSFN----------- 267
HL D + + + ++ V K + L +
Sbjct: 292 --HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ 349
Query: 268 ----PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
PYN L+ + + V L + V + + + + N+E +
Sbjct: 350 IITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSA 409
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 5e-13
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKV-----IDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235
++S + + I +DV + + + + +V D+ W+ ++
Sbjct: 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169
Query: 236 DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD-----MRK 290
D + + + V + ++P + LA + TV + +
Sbjct: 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTLQEKKV 228
Query: 291 MTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324
+ P S H V V W + + +A D
Sbjct: 229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 4e-05
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 30/272 (11%)
Query: 84 VLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSC---EV 140
+ PTK+ ++ I + + ++ L SS +
Sbjct: 61 IFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120
Query: 141 YVFD---CAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197
FD + +A++Q+ LK + W+P + D I + V+
Sbjct: 121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180
Query: 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-- 255
+ + V V W K + L + ++ + + +
Sbjct: 181 ETVK------VCATLPSTVAVTSVCWSPKGKQLA-VGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 256 ----AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWD 311
H V + + + + A++D T+ + L EE +
Sbjct: 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTL-----ETSPDVVMALLPKKEEKHPEIFV 288
Query: 312 PNHETVLASSAD------DRRLMVWDLNRIGD 337
E S + + WDL
Sbjct: 289 NFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS 320
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 9e-13
Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 16/221 (7%)
Query: 186 SHDNKICLWDVSALAQDKVIDAM--------HVYEAHESVVEDVSWHLKNENLFGSAGDD 237
S+ + I ++ + D + + + H+ GSA
Sbjct: 116 SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQ 175
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPLH 296
Q + +KAH + + N ++AT S D T + +F +
Sbjct: 176 DQG-VQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV-LVR 232
Query: 297 ILSSHTE--EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
+ +V ++W + + LA +D L V+++ + + F
Sbjct: 233 EFRRGLDRADVVDMKWSTD-GSKLAVVSDKWTLHVFEIFN-DQDNKRHALKGWINMKYFQ 290
Query: 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
I+ +++ + V VW T I
Sbjct: 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 39/186 (20%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDN-KICLWDVSALAQDKVIDAMHVYE----AHES 216
+K H + + K + + S D I ++ D + V E +
Sbjct: 191 IKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTE--------DGVLVREFRRGLDRA 241
Query: 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR--------VKAHEKEVNYLSFNP 268
V D+ W + + D L ++++ +Q +R +K + E + +F
Sbjct: 242 DVVDMKWS-TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL 300
Query: 269 YNEW-----VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
+ +A S + V ++ + E F+V +D E L
Sbjct: 301 SVDKHVRGCKIAWISESSLVVVWPHTR-----------MIETFKVVFDDEMERWLIQMDQ 349
Query: 324 DRRLMV 329
+LM+
Sbjct: 350 REQLMI 355
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 2e-11
Identities = 22/190 (11%), Positives = 58/190 (30%), Gaps = 40/190 (21%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
+ + YLV + + + + L KV+ + + + + +
Sbjct: 64 MRFVK--GIYLVVINAKDTVYVLS---LYSQKVLTTVF----VPGKITSIDTDASLDWML 114
Query: 232 GSAGDDCQLMIWDLRTNQTQQRV-----------KAHEKEVNYLSFNPYNEWVLATASSD 280
+ ++++D+ +Q A + + +NP + + +
Sbjct: 115 -IGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173
Query: 281 TTVALFDMRKMTV-----------------PLHILSSHTEEVFQVEWDPNHETVLASSAD 323
T+ + + + + T +V Q + PN + + +
Sbjct: 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHE 231
Query: 324 DRRLMVWDLN 333
D L+ WD N
Sbjct: 232 DNSLVFWDAN 241
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 26/290 (8%), Positives = 68/290 (23%), Gaps = 53/290 (18%)
Query: 135 TSSCEVYVFDCAKQAEKQQ---DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191
+ + V+D + + + W+P G V S++
Sbjct: 117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVT 175
Query: 192 CLWDVSALAQDKVID------------AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239
+ + + + E V +H N + +D
Sbjct: 176 LTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNS 234
Query: 240 LMIWDLRTNQTQQRVKAHEKEVN--YLSFNPYN----------EWVLATASSDTTVALFD 287
L+ WD + E E+N + + W+ + + T L
Sbjct: 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWM-CENNPEYTSLLI- 292
Query: 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347
+ + + + + + P + +S + + + ++ L
Sbjct: 293 ---SHKSISRGDNQSLTMIDLGYTPRYSI---TSYEGMKNYYANPKQMKIFPLP------ 340
Query: 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397
I + + + + + I
Sbjct: 341 ----------TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML 380
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 9e-04
Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 26/185 (14%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA-----LAQDKVIDAMHVYEAHES 216
LKG + + + ++G + + ++D S A +V + + +A E
Sbjct: 431 LKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKEL 489
Query: 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276
V+ +S+ + L + + ++++ NQ E ++F ++
Sbjct: 490 AVDKISFAAETLELA-VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548
Query: 277 ASSDTTV-ALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--------DDRRL 327
D A +R+ +P + ++ + + + +S L
Sbjct: 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKT----------SAINNSNIGFVGIAYAAGSL 598
Query: 328 MVWDL 332
M+ D
Sbjct: 599 MLIDR 603
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 5e-06
Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 23/218 (10%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
G SP V+ +H N + + D A + VI + S + V+ +
Sbjct: 35 MGAVISPDGTKVYVANAHSNDVSIID---TATNNVIATVPA----GSSPQGVAVSPDGKQ 87
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289
++ + L + D +N VK K L+ +P + + T + D TV++ +
Sbjct: 88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146
Query: 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349
V + + P+ V ++ D + V D + E P
Sbjct: 147 TKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKVEAAPS 203
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
+ + G KA +V + NTV +
Sbjct: 204 GIAVNPEGTKA------------YVTNVDKYFNTVSMI 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 64/438 (14%), Positives = 134/438 (30%), Gaps = 108/438 (24%)
Query: 11 DQVEEEF--TVWKKNTPFLYDLIVSHPLEWPSL-TVHWVPSPPQPYSADPTFAVHKFVLG 67
+++ ++F V + N FL I + + PS+ T ++ + Y+ + FA + V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKY-NV-- 131
Query: 68 THTSEDFPNFLMIADAVLPTKDSESNVG-------GKNENPVIPKVEIAQKIRV----DG 116
+ +L + A+L + NV GK + +++ +V D
Sbjct: 132 --SRLQ--PYLKLRQALLELR-PAKNVLIDGVLGSGKT---WV-ALDVCLSYKVQCKMDF 182
Query: 117 EV---NRARCMPQKPNLVGTKTSS-CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG- 171
++ N C P V Y D + D +++L+ H +
Sbjct: 183 KIFWLNLKNC--NSPETVLEMLQKLL--YQIDPNWT---SRSDHSSNIKLRIHSIQAELR 235
Query: 172 --LSWSPFKEGYLVSGSHDNKICLWDVSALA------------QDK-VIDAMHVYEAHES 216
L P++ LV N + + A + K V D +
Sbjct: 236 RLLKSKPYENCLLVL---LN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 217 VVEDVSWHL---KNENLF----GSAGDD-----CQL------MIWDLRTNQTQQRVKAHE 258
++ S L + ++L D +I + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDGL 341
Query: 259 KEVNYLSFNPYNEWVLATASSDTTVAL--FDMRKMTVPLHILSSH---TEEVFQVEWDPN 313
+ + N L T + L + RKM L + + + W
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 314 HETVLASSADD--RRLMV---WDLNRIG--DEQLELDAE-DGPPELLFSHGGHKAKISDF 365
++ + + + +V + I LEL + + L H++ + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------HRSIVDHY 453
Query: 366 SWNKN-DPWVISSVADDN 382
+ K D + D
Sbjct: 454 NIPKTFDSDDLIPPYLDQ 471
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 26/233 (11%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
Y+++ + +K+ + D +A DKVI + V+ + + + L
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGR--IAYATVNKSESL 58
Query: 241 MIWDLRTNQTQQRVKAHEKEVN----------------YLSFNPYNEWVLATASSDTTVA 284
+ DL T +T R+ E + +P + T VA
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118
Query: 285 LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344
L+D ++ ++ + W + + D L V D G +
Sbjct: 119 LYDAETLSRRKAF--EAPRQITMLAWARDGSKLYGLGRD---LHVMDPEA-GTLVEDKPI 172
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397
+ E S ++ D + + D
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 26/201 (12%), Positives = 59/201 (29%), Gaps = 6/201 (2%)
Query: 161 RLKGHDKEGYG-LSWSPFKEGYLVSGSHDNK-ICLWDVSALAQDKVIDAMHVYEAHESVV 218
L G +E W+P + + + D + A ++ +
Sbjct: 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 219 EDVSWHLKNENLFGSAGDD--CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276
+ L L I D + + + L+ + V
Sbjct: 295 GMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSG-TRAVGVA 353
Query: 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336
AS T + ++ +T + + + + P + ++ D R + +
Sbjct: 354 ASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAH-IYPPH 412
Query: 337 DEQLELDAEDGPPELLFSHGG 357
A++ PP ++ +HGG
Sbjct: 413 SPDFTGPADELPPYVVMAHGG 433
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 406 | |||
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.98 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.98 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.78 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.77 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.76 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.67 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.66 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.63 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.62 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.59 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.56 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.52 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.5 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.5 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.43 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.41 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.4 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.39 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.34 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.29 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.27 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.23 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.17 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.15 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.05 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.02 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.99 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.96 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.93 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.92 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.92 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.91 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.88 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.85 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.85 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.82 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.81 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.79 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.79 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.69 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.66 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.65 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.64 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.6 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.57 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.49 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.47 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.47 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.44 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.44 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.43 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.4 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.39 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.39 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.38 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.37 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.35 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.34 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.31 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.3 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.28 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.27 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.25 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.24 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.22 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.2 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.12 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.12 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.06 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.06 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.96 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.94 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.86 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.81 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.79 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.72 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.61 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.56 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.56 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.51 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.5 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.47 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.43 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.34 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.32 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.3 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.27 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.26 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.25 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.17 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.17 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.15 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.92 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.77 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.65 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.41 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.34 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.29 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.18 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.18 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.17 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.16 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.04 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.98 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.95 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.89 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.84 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.8 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.7 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.69 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.59 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.23 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.22 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.22 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.06 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.73 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.69 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 94.52 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.43 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.63 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.31 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.01 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.36 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.2 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.53 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.18 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 90.07 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 88.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.59 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 86.58 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 85.77 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.15 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 83.22 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 82.17 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 80.38 |
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-63 Score=464.46 Aligned_cols=392 Identities=54% Similarity=1.000 Sum_probs=325.3
Q ss_pred hhchhhhhHHhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCC
Q 015484 7 DASLDQVEEEFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLP 86 (406)
Q Consensus 7 ~~~~~~~~~~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~ 86 (406)
+.+++.++|||++||||+|+||+++++|.++||+|+++|+|+.... . +..|..+++++||++.. ..|+|+++++.+|
T Consensus 15 ~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~-~-~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp 91 (430)
T 2xyi_A 15 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQ-D-GKDYSVHRLILGTHTSD-EQNHLLIASVQLP 91 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEEC-T-TCSCEEEEEEEECCCSS-SCEEEEEEEEEEC
T ss_pred chhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccc-c-CCCcceEEEEEEEcCCC-CCCEEEEEEEECC
Confidence 5778999999999999999999999999999999999999998765 4 56788899999999987 8999999999988
Q ss_pred CCCCCCCCC---CCC-CC----CCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--CCC
Q 015484 87 TKDSESNVG---GKN-EN----PVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--DDC 156 (406)
Q Consensus 87 ~~~~~~~~~---~~~-~~----~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~ 156 (406)
......+.. +++ +. ...++++....+.|.+.|++++|+|+++.+||+++.+|.|+||++........ +..
T Consensus 92 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~ 171 (430)
T 2xyi_A 92 SEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC 171 (430)
T ss_dssp --------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCC
T ss_pred CCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccC
Confidence 432211100 111 11 24578888899999999999999998668999999999999999986322111 235
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.+...+.+|...|++++|+|++.++|++|+.||.|++|++..... ...+.....+..|...|.+++|+|.++.+|++++
T Consensus 172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~ 251 (430)
T 2xyi_A 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251 (430)
T ss_dssp CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence 678889999999999999998877999999999999999987432 2333445667789999999999998889999999
Q ss_pred cCCcEEEEECCCC---cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 236 DDCQLMIWDLRTN---QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 236 ~dg~i~i~d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.||.|++||++++ +.+..+..|...|++++|+|+++++|++|+.||.|++||++....++..+..|...|.+++|+|
T Consensus 252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 9999999999987 4566677899999999999999878999999999999999987777999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 313 NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+++.+|++++.||.|+|||+.............++++.+++.+.+|...|.+++|+|+++++|++++.||.|+||++.++
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99888999999999999999886554444444556678999999999999999999999988999999999999999999
Q ss_pred ccCCCcccc
Q 015484 393 IYRDDDDFL 401 (406)
Q Consensus 393 ~~~~~~~~~ 401 (406)
.+.+++...
T Consensus 412 ~~~~~~~~~ 420 (430)
T 2xyi_A 412 VYNDEEPEI 420 (430)
T ss_dssp HHCC-----
T ss_pred cccCCCccC
Confidence 887665543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=321.20 Aligned_cols=258 Identities=20% Similarity=0.270 Sum_probs=216.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|++++|+|++ .|++|+.||+|+|||+.+.... ......+.+|...|++++|+|++. +|++|+.||
T Consensus 77 ~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~----~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~ 149 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETL----IVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDI 149 (344)
T ss_dssp EEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSC----EEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred eeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCce----eEeeccccCCCCCEEEEEECCCCC-EEEEEeCCC
Confidence 355688899999999986 5889999999999999874321 011234568999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEec
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~ 267 (406)
+|++||+.+++ ++..+.+|...|.+++|+|.+..+|++++.||.|++||+++++....+ ..+...+.+++|+
T Consensus 150 ~i~iwd~~~~~------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 150 CIKVWDLAQQV------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp CEEEEETTTTE------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred eEEEEECCCCc------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 99999998863 346678899999999999977789999999999999999999887766 3456679999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
|++..+|++|+.||.|++||+++.+. +..+.+|...|++++|+|++..+|++|+.|++|+|||+..
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~------------- 289 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL------------- 289 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-------------
T ss_pred CCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-------------
Confidence 98776999999999999999998665 8889999999999999999876799999999999999976
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
..+....+|...|++++|+|+++++|++++.|+.|++|++.++.+..
T Consensus 290 --~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~ 336 (344)
T 4gqb_B 290 --SELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPA 336 (344)
T ss_dssp --CEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-----
T ss_pred --CcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCC
Confidence 22345689999999999999998889999999999999998876543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=304.34 Aligned_cols=286 Identities=17% Similarity=0.325 Sum_probs=242.3
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
+..++.|.|+.... ...++.|.. ++.|.+|++.-. ..... ...+|...
T Consensus 34 ~V~~v~~~~~~~~~--------~~~l~tgs~-----D~~v~vW~~~~~------------------~~~~~~~l~gh~~~ 82 (321)
T 3ow8_A 34 AIWSVAWGTNKKEN--------SETVVTGSL-----DDLVKVWKWRDE------------------RLDLQWSLEGHQLG 82 (321)
T ss_dssp CEEEEEEC---------------CEEEEEET-----TSCEEEEEEETT------------------EEEEEEEECCCSSC
T ss_pred cEEEEEEecCCCCC--------CCEEEEEcC-----CCCEEEEECCCC------------------CeeeeeeeccCCCC
Confidence 77899998753321 125666554 367888877622 12222 34579999
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
|.+++|+|++ .++++++.|++|++||+.+. .....+..|...+.+++|+|++. +|++|+.||.|++|++.
T Consensus 83 v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~--------~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 83 VVSVDISHTL-PIAASSSLDAHIRLWDLENG--------KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETT
T ss_pred EEEEEECCCC-CEEEEEeCCCcEEEEECCCC--------CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcC
Confidence 9999999998 58999999999999999874 33567788899999999999998 99999999999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
++.. ...+..+...|.+++|+| ++++|++++.||.|++||+++++.+..+.+|...|++++|+|++. +|++|
T Consensus 153 ~~~~------~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~ 224 (321)
T 3ow8_A 153 SGKK------EYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTA 224 (321)
T ss_dssp TCSE------EEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEE
T ss_pred CCce------eEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEE
Confidence 7643 244566888999999999 789999999999999999999999999999999999999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
+.|+.|++||++.... +..+.+|...|.+++|+|+++ +|++++.|+.|+|||+.+ ..++..+.+
T Consensus 225 s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~--------------~~~~~~~~~ 288 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGT--------------RTCVHTFFD 288 (321)
T ss_dssp CTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECC
T ss_pred cCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC--------------CEEEEEEcC
Confidence 9999999999998654 778899999999999999997 699999999999999986 467778889
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|...|.+++|+|+++ .|++++.||.|+|||+.
T Consensus 289 h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence 999999999999999 68999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=303.59 Aligned_cols=251 Identities=20% Similarity=0.313 Sum_probs=220.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|++ .+|++|+.||+|+|||+.+. .....+..|..+|.+++|+|++. +|++|+.|++
T Consensus 9 ~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~ 78 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFR 78 (304)
T ss_dssp EEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSE
T ss_pred ecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCE
Confidence 44799999999999999 68999999999999999873 33677889999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc-ccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ-TQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.+++. +..+.+|...|.+++|+| ++.+|++|+.||.|++||++++. ....+.+|...|.+++|+|.
T Consensus 79 i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~ 151 (304)
T 2ynn_A 79 IRVFNYNTGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (304)
T ss_dssp EEEEETTTCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred EEEEECCCCcE------EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence 99999988642 456778999999999999 67899999999999999998874 34567889999999999996
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+..+|++|+.|+.|++||++...........|...+..+.|+| +++ +|++++.|+.|++||++.
T Consensus 152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~------------- 217 (304)
T 2ynn_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT------------- 217 (304)
T ss_dssp CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT-------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC-------------
Confidence 5449999999999999999887665555566778999999987 444 799999999999999986
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..++..+.+|...|..++|+|+++ +|++|+.||.|++||+.++..
T Consensus 218 -~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 218 -KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp -TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE
T ss_pred -CccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce
Confidence 467788899999999999999999 799999999999999988754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=311.78 Aligned_cols=246 Identities=22% Similarity=0.360 Sum_probs=219.3
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+|++|+.||+|+|||+... .....+.+|...|.+++|+|++. +|++|+.|+
T Consensus 145 ~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~ 214 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDK 214 (410)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCC
Confidence 345799999999999998 68999999999999999873 34667889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.++. ++..+.+|...|.++.|+| ++.+|++|+.||.|++||+++++....+..|...|.+++|+|+
T Consensus 215 ~i~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 215 TIKMWEVQTGY------CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred eEEEEECCCCc------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 99999998864 3456778999999999998 7899999999999999999999988889899999999999996
Q ss_pred --------------------CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 270 --------------------NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 270 --------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
+. +|++|+.|+.|++||++++.. +..+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~v 364 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRV 364 (410)
T ss_dssp CGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEE
T ss_pred ccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Confidence 44 899999999999999998654 788899999999999999997 5899999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
||+.. ..++..+.+|...|++++|+|+++ +|++|+.||.|+||++.
T Consensus 365 wd~~~--------------~~~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 365 WDYKN--------------KRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCTT--------------SCCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred EECCC--------------CceEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence 99976 345566788999999999999999 58999999999999863
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=310.81 Aligned_cols=250 Identities=23% Similarity=0.355 Sum_probs=225.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.++|++++|+|++ .+|++|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.||+
T Consensus 104 l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGK-LLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred ecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence 45899999999999998 68999999999999999873 44678999999999999999988 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||+.+.. ++..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+.+|...|.++.++|++
T Consensus 174 i~iwd~~~~~------~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 174 IKLWDFQGFE------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp CCEEETTSSC------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCCc------eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence 9999997753 3466678999999999999 68899999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC-------------------CCEEEEEeCCCcEEEEe
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH-------------------ETVLASSADDRRLMVWD 331 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~-------------------~~~l~s~~~dg~i~iwd 331 (406)
. +|++|+.|+.|++||+++... ...+..|...|.+++|+|++ ..+|++|+.|+.|++||
T Consensus 247 ~-~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 247 T-LIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp S-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred C-EEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 8 999999999999999998654 77888999999999999963 23799999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++. ..++..+.+|...|.+++|+|+++ +|++++.||.|++||+.++..
T Consensus 325 ~~~--------------~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 325 VST--------------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp TTT--------------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCC
T ss_pred CCC--------------CceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce
Confidence 986 466777889999999999999999 588999999999999987643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=304.51 Aligned_cols=254 Identities=19% Similarity=0.306 Sum_probs=210.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ . +++++.||+|+|||+.+.... ........+|...|++++|+|++. +|++|+.|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~-~-~l~~s~dg~v~lWd~~~~~~~----~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~d 160 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEK-G-ILVASDSGAVELWEILEKESL----LVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKD 160 (357)
T ss_dssp SEEEECSSCEEEEEEETTT-E-EEEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETT
T ss_pred cccCCCCCCEEEEEEcCCC-C-EEEEECCCEEEEeecccccee----EEEeeccCCCCCCEEEEEECCCCC-EEEEEeCC
Confidence 3456799999999999987 4 566788999999999874321 122344568999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~ 266 (406)
|+|++||++++. .+..+..|...|++++|+|.+..++++++.||.|++||+++++....+ ..+...+++++|
T Consensus 161 g~v~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 161 FSVKVWDLSQKA------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred CeEEEEECCCCc------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 999999998763 345667899999999999977778999999999999999998876654 456778999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++..+|++|+.|+.|++||+++... +..+..|...|++++|+|++..+|++|+.||+|+|||++.
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~------------ 301 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF------------ 301 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS------------
T ss_pred hhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC------------
Confidence 998777999999999999999998665 7889999999999999999877899999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.+++ ...+|...|++++|+| ++. +|+|++.||.|++|++.+.
T Consensus 302 --~~~~-~~~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 302 --SEVF-RDLSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp --CEEE-EECCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC--
T ss_pred --CcEe-EECCCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCC
Confidence 2333 3457999999999999 566 7999999999999999764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=299.62 Aligned_cols=252 Identities=19% Similarity=0.302 Sum_probs=220.7
Q ss_pred EEeecCCceeEEEEcCCC---CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 110 QKIRVDGEVNRARCMPQK---PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
...+|.+.|++++|+|++ ..+|++|+.|++|+||++.... ......+.+|...|.+++|++++. ++++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s 99 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------LDLQWSLEGHQLGVVSVDISHTLP-IAASSS 99 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECSSSS-EEEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------eeeeeeeccCCCCEEEEEECCCCC-EEEEEe
Confidence 344799999999999852 3589999999999999987632 222456889999999999999988 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.|++|++||+.+++. +..+..+...+.+++|+| ++.+|++++.||.|++||+++++....+..+...|.+++|
T Consensus 100 ~D~~i~lWd~~~~~~------~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQ------IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp TTSEEEEEETTTTEE------EEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred CCCcEEEEECCCCCE------EEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 999999999988642 345567788899999999 7889999999999999999999988888888999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|+++ +|++|+.||.|++||+++++. +..+.+|...|.+++|+|+++ +|++++.||.|++||++.
T Consensus 173 spdg~-~lasg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~------------ 237 (321)
T 3ow8_A 173 SPDGK-YLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQH------------ 237 (321)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTT------------
T ss_pred CCCCC-EEEEEcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCC------------
Confidence 99999 999999999999999998654 788899999999999999997 699999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+...+.+|...|.+++|+|+++ +|++++.|+.|+|||+.++.
T Consensus 238 --~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 238 --ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE
T ss_pred --cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCE
Confidence 355677889999999999999999 69999999999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=297.95 Aligned_cols=265 Identities=21% Similarity=0.377 Sum_probs=214.6
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|.+.|++++|+|++ .+||+|+.|++|+||++.... ......+.+|...|.+++|+|++. +|++|+.|++|
T Consensus 58 ~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v 129 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSV 129 (345)
T ss_dssp SSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred cccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeE
Confidence 4799999999999998 689999999999999987632 233567889999999999999988 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEEecCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~~~~~ 269 (406)
++||+..... ..++..+..|...|.+++|+| ++.+|++++.|+.|++||++.++. ...+.+|...|++++|+|+
T Consensus 130 ~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 130 WVWEVDEEDE---YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp EEEEECTTSC---EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEECCCCCC---eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence 9999987532 234466778999999999999 678899999999999999987753 4567889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCC--------------cEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVP--------------LHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+. +|++|+.|+.|++||....... +..+.+ |...|.+++|+|++. .|++++.|+.|++|+...
T Consensus 206 g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 206 GQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP 283 (345)
T ss_dssp SS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred CC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence 98 9999999999999997543211 223333 888999999999997 599999999999999875
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
........ .......+.+|...|++++|+|+++.+|+||+.||.|++|++.++...
T Consensus 284 ~~~~~~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 284 NSDPQQPT-----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp TSCTTSCC-----EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CCCcceee-----EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 32211100 001122346899999999999998668999999999999999887643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=291.29 Aligned_cols=248 Identities=21% Similarity=0.298 Sum_probs=214.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.....|...|.+++|+|++ .+|++|+.|+.|++|++..... .......+.+|...|.++.|++++ .+++++.|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d 163 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG----NVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGD 163 (340)
T ss_dssp EEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB----SCEEEEEEECCSSCEEEEEEEETT--EEEEEETT
T ss_pred eEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC----cceeEEEecCCCccEEEEEECCCC--cEEEEECC
Confidence 3345689999999999998 6899999999999999976421 123355678999999999999865 58999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
++|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.....+.+|...|++++|+|
T Consensus 164 ~~i~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 164 TTCALWDIETGQ------QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred CcEEEEECCCCc------EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence 999999998764 2356678999999999999 688999999999999999999999889999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. +|++|+.||.|++||++.... +..+. .+...|.+++|+|+++ +|++|+.||.|++||+..
T Consensus 237 ~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~------------ 301 (340)
T 1got_B 237 NGN-AFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK------------ 301 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTT------------
T ss_pred CCC-EEEEEcCCCcEEEEECCCCcE-EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEccc------------
Confidence 998 999999999999999997553 44443 2335799999999997 699999999999999876
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+.+|...|.+++|+|++. +|++|+.|+.|+||+
T Consensus 302 --~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 --ADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp --CCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred --CcEeeEeecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 355667789999999999999999 589999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=288.62 Aligned_cols=256 Identities=20% Similarity=0.283 Sum_probs=211.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.|++|+||++... ...+...+.+|..+|.+++|++. +. +|++|+.|
T Consensus 5 ~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~------~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D 76 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 76 (297)
T ss_dssp CCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS------CBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred ccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC------CcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCC
Confidence 44799999999999999 68999999999999999752 23457789999999999999864 55 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|+|++||+.++.. ..+..+..|...|.+++|+|.. +.+|++++.||.|++||++.+.. ...+.+|...|.+++
T Consensus 77 ~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 77 GKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp TEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred CEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 9999999987532 1234556789999999999942 68999999999999999987643 345578999999999
Q ss_pred ecCCC------------CcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCC--CCEEEEEeCCCcEE
Q 015484 266 FNPYN------------EWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNH--ETVLASSADDRRLM 328 (406)
Q Consensus 266 ~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~--~~~l~s~~~dg~i~ 328 (406)
|+|++ ..+|++|+.|+.|++||++.... ....+.+|...|.+++|+|++ ..+|++++.|++|+
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 99973 23899999999999999987552 345788999999999999985 34799999999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|||++..... .....+ .+|...|.+++|+|+++ +|++++.|+.|+||++.
T Consensus 233 iWd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 233 IWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCc-----------cceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence 9998762210 011112 46788899999999999 58999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=291.94 Aligned_cols=253 Identities=15% Similarity=0.263 Sum_probs=218.7
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+|++|+.||+|+|||..+. .....+..|...|.+++|+|++. +|++|+.|
T Consensus 49 ~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 118 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGN-YVACGGLD 118 (340)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSS-EEEEEETT
T ss_pred eeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCC-EEEEEeCC
Confidence 3355799999999999998 68999999999999999873 34677888999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+.|++|++.+.... ......+.+|...|.++.|++ ...+++++.|+.|++||+++++.+..+.+|...|.+++|+|
T Consensus 119 ~~v~iw~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 194 (340)
T 1got_B 119 NICSIYNLKTREGN--VRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194 (340)
T ss_dssp CEEEEEETTTCSBS--CEEEEEEECCSSCEEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred CeEEEEECccCCCc--ceeEEEecCCCccEEEEEECC--CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC
Confidence 99999999875422 233456778999999999997 34588999999999999999999889999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. +|++|+.|+.|++||+++... +..+.+|...|.+++|+|+++ +|++++.||.|++||++..
T Consensus 195 ~~~-~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~------------- 258 (340)
T 1got_B 195 DTR-LFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD------------- 258 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-------------
T ss_pred CCC-EEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC-------------
Confidence 998 999999999999999998654 788999999999999999997 6999999999999999862
Q ss_pred CeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+ ..+...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus 259 -~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 259 -QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp -EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred -cEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCc
Confidence 222222 33445799999999999 79999999999999987754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=283.95 Aligned_cols=285 Identities=19% Similarity=0.280 Sum_probs=233.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..+++|.|+. ..++.|.. ++.|.+|++.- ...+.....|..+|
T Consensus 15 ~V~~~~fsp~~------------~~l~s~~~-----dg~v~lWd~~~-------------------~~~~~~~~~~~~~v 58 (304)
T 2ynn_A 15 RVKGIDFHPTE------------PWVLTTLY-----SGRVELWNYET-------------------QVEVRSIQVTETPV 58 (304)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEETTT-------------------TEEEEEEECCSSCE
T ss_pred ceEEEEECCCC------------CEEEEEcC-----CCcEEEEECCC-------------------CceeEEeeccCCcE
Confidence 56788887742 14555554 36788875331 12234445689999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++|+|++ .+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++. +|++|+.||+|++||+++
T Consensus 59 ~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 59 RAGKFIARK-NWIIVGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp EEEEEEGGG-TEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGG
T ss_pred EEEEEeCCC-CEEEEECCCCEEEEEECCCC--------cEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCC
Confidence 999999998 68999999999999999873 44678899999999999999998 999999999999999976
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecC--CCCcEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNP--YNEWVLA 275 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~--~~~~~l~ 275 (406)
+.. ....+.+|...|.+++|+|.++.+|++|+.||.|++||++++.....+ ..+...+..++|+| ++. +|+
T Consensus 129 ~~~-----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~ 202 (304)
T 2ynn_A 129 NWA-----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMI 202 (304)
T ss_dssp TTE-----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEE
T ss_pred Ccc-----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEE
Confidence 521 235567899999999999977899999999999999999887766555 34567899999987 555 899
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|+.|+.|++||+++... +..+.+|...|.+++|+|+++ +|++|+.||.|++||+.+ .+++..+
T Consensus 203 s~s~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~--------------~~~~~~~ 266 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST--------------YKVEKTL 266 (304)
T ss_dssp EEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT--------------CCEEEEE
T ss_pred EEcCCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCC--------------Cceeeec
Confidence 999999999999998654 888999999999999999997 799999999999999986 4667777
Q ss_pred cCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~ 392 (406)
..|...+.+++|+|++.. ++++|+ |+.+.+|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 267 NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND 303 (304)
T ss_dssp CCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC--
T ss_pred cCCCccEEEEEECCCCCceEEEEec-CCceEEEEeccC
Confidence 889999999999998863 367766 555888887653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=287.87 Aligned_cols=251 Identities=21% Similarity=0.287 Sum_probs=215.2
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
....|...|.+++|+|++ .+||+|+.|+.+++|++....... .......+.+|...|.+++|+|++. .|++|+.||
T Consensus 101 ~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~ 176 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDG 176 (354)
T ss_dssp EEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc--ccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCC
Confidence 344688899999999999 689999999999999987532211 1233566788999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+|++||+++++ .+..+.+|...|.+++|+|. ++.+|++|+.||.|++||+++++.+..+..|...|++++|+|
T Consensus 177 ~v~lwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 250 (354)
T 2pbi_B 177 TCALWDVESGQ------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP 250 (354)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred cEEEEeCCCCe------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC
Confidence 99999998864 34667789999999999884 358999999999999999999999989999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. +|++|+.|+.|++||++.... +..+.. +...+.+++|+|+++ +|++|+.|+.|++||+..
T Consensus 251 ~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~------------ 315 (354)
T 2pbi_B 251 SGD-AFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLK------------ 315 (354)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTT------------
T ss_pred CCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCC------------
Confidence 998 999999999999999997543 444433 335789999999997 799999999999999976
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
...+..+.+|...|++++|+|+++ +|++|+.|+.|+||+
T Consensus 316 --~~~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 --GSRVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVWA 354 (354)
T ss_dssp --CSEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred --CceEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence 345567789999999999999999 589999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=288.49 Aligned_cols=267 Identities=18% Similarity=0.295 Sum_probs=214.9
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|+++.+|++|+.|++|++|++...... ...+...+.+|...|.+++|+|++. +|++|+.|++
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~ 88 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---FGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKT 88 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---EEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---ccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCE
Confidence 44799999999999987789999999999999998753221 1234667899999999999999998 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||+.+++ .+..+.+|...|.+++|+| ++.+|++++.|+.|++||++ ++.+..+.+|...|.++.|.|..
T Consensus 89 v~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 89 LRLWDVATGE------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp EEEEETTTTE------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-
T ss_pred EEEEECCCCC------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCC
Confidence 9999998864 3466778999999999999 78899999999999999997 45567778899999999999853
Q ss_pred C-----cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc-
Q 015484 271 E-----WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA- 344 (406)
Q Consensus 271 ~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 344 (406)
. .++++++.|+.|++||++.... ...+.+|...|.+++|+|+++ +|++++.||.|+|||+............
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 2 2799999999999999997554 677889999999999999997 6999999999999999874321111000
Q ss_pred --------cCC-----------------CCeeEEEe--------cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 345 --------EDG-----------------PPELLFSH--------GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 345 --------~~~-----------------~~~~~~~~--------~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.++ ...++... ..|...+.+++|+|+|+ +|++|+.||.|+||++.+
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 000 00111111 12455688999999999 689999999999999876
Q ss_pred c
Q 015484 392 S 392 (406)
Q Consensus 392 ~ 392 (406)
+
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=298.31 Aligned_cols=259 Identities=17% Similarity=0.263 Sum_probs=209.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeC------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTS------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..|.+.|++++|+|+| .+||+|+. |+.|++|+....... ........+|...|.+++|+|++. ++++
T Consensus 39 ~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~----~~~~~~~~~~~~~V~~~~~s~d~~--~l~~ 111 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPN----ESLCTAGVQTEAGVTDVAWVSEKG--ILVA 111 (357)
T ss_dssp -CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---C----GGGCSEEEECSSCEEEEEEETTTE--EEEE
T ss_pred ccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcc----eeEecccCCCCCCEEEEEEcCCCC--EEEE
Confidence 3699999999999999 68999987 788999998764321 112334567889999999999764 6677
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.||+|++||+.+++..... .....+|...|++++|+| ++++|++++.||.|++||+++++.+..+..|...|++++
T Consensus 112 s~dg~v~lWd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVN--KFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp ETTSCEEEC--------CCC--CEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCEEEEeeccccceeEEE--eeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 88999999999886543221 123457899999999999 788999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPL-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
|+|++..++++++.||.|++||+++++... .....|...+.+++|+|++..+|++|+.|+.|++||++.
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~---------- 258 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN---------- 258 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC----------
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC----------
Confidence 999987789999999999999999866422 234457788999999999877899999999999999986
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|++++|+|++..+|++++.|+.|+|||+.++..
T Consensus 259 ----~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 259 ----PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp ----GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred ----CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 3455677889999999999999865799999999999999988754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=299.97 Aligned_cols=263 Identities=22% Similarity=0.341 Sum_probs=216.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.....|...|.+++|+|++ .+||+|+.|+.|+||++....... ........+.+|...|.++.|+|++...|++|+.|
T Consensus 102 ~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D 179 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179 (380)
T ss_dssp EEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT
T ss_pred eEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc-CCccceeeccCCCcceEEEEEecCCCCEEEEECCC
Confidence 4445799999999999999 689999999999999997643211 12334566889999999999999876689999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~ 267 (406)
++|++||+.++.....+.. ....+|...|.+++|+|.++.+|++|+.||.|++||++. ++.+..+.+|...|++++|+
T Consensus 180 ~~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp SCEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC
T ss_pred CcEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe
Confidence 9999999988753221110 112568889999999987889999999999999999984 56677888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
|++. +|++|+.||.|++||++++.. +..+..+. ..|++++|+|+++ +|++|+.||.|++||+...
T Consensus 259 p~~~-~l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~----- 330 (380)
T 3iz6_a 259 PDGQ-RFGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLA----- 330 (380)
T ss_dssp TTSS-EEEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTC-----
T ss_pred cCCC-eEEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCC-----
Confidence 9998 999999999999999998654 44444332 3489999999997 6999999999999998762
Q ss_pred cccccCCCCeeEEEe----cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSH----GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.+..+ .+|...|.+++|+|++. +|++|+.|+.|+||++...
T Consensus 331 ---------~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 331 ---------EMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ---------CEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSS
T ss_pred ---------ceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCC
Confidence 233333 57999999999999999 6999999999999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=292.37 Aligned_cols=261 Identities=16% Similarity=0.186 Sum_probs=209.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
.|...|.+++|+|+| .+|++++ |+++++||........ ............|...|.+++|+|++ .|++|+.||
T Consensus 28 ~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg 103 (344)
T 4gqb_B 28 CMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSG 103 (344)
T ss_dssp SCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTS
T ss_pred cccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCC
Confidence 467889999999999 5777776 6677777632110000 00001112233466789999999964 688999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.+++..... .....+|...|++++|+| ++++|++|+.||.|++||+++++.+..+.+|...|++++|+|+
T Consensus 104 ~v~lWd~~~~~~~~~~--~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 104 AVELWELDENETLIVS--KFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp EEEEEEECTTSSCEEE--EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred EEEEEeccCCCceeEe--eccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence 9999999987654322 234557999999999999 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+..+|++++.|+.|++||+++.+. ...+ ..|...+.+++|+|++..+|++|+.||.|+|||+++
T Consensus 181 ~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------------- 246 (344)
T 4gqb_B 181 KDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------------- 246 (344)
T ss_dssp CTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------------
T ss_pred CCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-------------
Confidence 977899999999999999998664 5554 345667999999998777899999999999999986
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+++..+.+|...|++++|+|++..+|++|+.|+.|+|||+.++.+.
T Consensus 247 -~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 247 -TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp ---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred -CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 35566778999999999999998657999999999999999887543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=298.63 Aligned_cols=259 Identities=17% Similarity=0.259 Sum_probs=218.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+|++|+.||+|+|||..+. .....+..|...|.+++|+|++. +|++|+.|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d 129 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQ-SVACGGLD 129 (380)
T ss_dssp EEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSS-EEEECCSS
T ss_pred ecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence 4455899999999999998 67999999999999999873 33677889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-----cccCCCee
Q 015484 189 NKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVN 262 (406)
Q Consensus 189 g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~ 262 (406)
+.|++|++...... ........+.+|...|.++.|.|.++..|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999999764321 1122335567899999999999977788999999999999999999877655 57889999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++|+|.+..+|++|+.|+.|++||++....++..+.+|...|.+++|+|+++ +|++|+.||+|++||++..
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~------- 281 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG------- 281 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT-------
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC-------
Confidence 99998844449999999999999999976667889999999999999999997 6999999999999999873
Q ss_pred cccCCCCeeEEEecC-------CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGG-------HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~-------h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+.. +...|++++|+|+|+ +|++|+.||.|++||+..+.
T Consensus 282 -------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 282 -------HQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp -------EEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC
T ss_pred -------cEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc
Confidence 22233222 233589999999999 69999999999999987653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=287.91 Aligned_cols=256 Identities=16% Similarity=0.233 Sum_probs=218.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+||+|+.||+|+|||.... .....+..|...|.+++|+|++. +|++|+.|
T Consensus 58 ~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d 127 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGC-AIACGGLD 127 (354)
T ss_dssp EEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSS-EEEEESTT
T ss_pred EEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence 3455899999999999998 68999999999999998763 33566778899999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+.+++|++..............+..|...|.+++|+| ++..|++++.||.|++||+++++.+..+.+|...|.+++|+|
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 9999999876433222233456678999999999998 678889999999999999999999999999999999999988
Q ss_pred C--CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 Y--NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
. +. +|++|+.||.|++||++++.. +..+..|...|++++|+|++. +|++++.|++|++||++..
T Consensus 207 ~~~g~-~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~----------- 272 (354)
T 2pbi_B 207 SETGN-TFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRAD----------- 272 (354)
T ss_dssp CSSCC-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-----------
T ss_pred CCCCC-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-----------
Confidence 5 45 999999999999999998664 788899999999999999997 6999999999999999862
Q ss_pred CCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+. .+...+.+++|+|+++ +|++++.|+.|++||+.++.
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 273 ---REVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp ---EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS
T ss_pred ---cEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCc
Confidence 2222222 3345789999999999 79999999999999997664
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=284.88 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=198.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+||+|+.|++|+||++....... ....+...+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~i 133 (330)
T 2hes_X 57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWI 133 (330)
T ss_dssp CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEE
T ss_pred ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEE
Confidence 99999999999998 689999999999999986421100 01233567889999999999999988 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC--cccccccccCCCeeEEEecCC--
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN--QTQQRVKAHEKEVNYLSFNPY-- 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~i~~~~~-- 269 (406)
||+..... ...++..+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.+|...|.+++|+|+
T Consensus 134 wd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 134 WETDESGE--EYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp EECCTTCC--CCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred EeccCCCC--CeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 99954321 1234566778999999999999 6889999999999999998876 567778899999999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCC-------CcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 270 NEWVLATASSDTTVALFDMRKMTV-------PLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
+. +|++|+.|+.|++||++.... ....+.. |...|.+++|++++ +|++++.||.|+|||.....
T Consensus 211 ~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~----- 282 (330)
T 2hes_X 211 VF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE----- 282 (330)
T ss_dssp SC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-----
T ss_pred ee-EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-----
Confidence 44 899999999999999975421 1333444 89999999999765 59999999999999986411
Q ss_pred ccccCCCCeeE-EEecCCCC-CeeeEEeCC--CCCcEEEEEeCCCcEEEEeCCC
Q 015484 342 LDAEDGPPELL-FSHGGHKA-KISDFSWNK--NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 342 ~~~~~~~~~~~-~~~~~h~~-~v~~~~~s~--~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.... ....+|.. .|.+++|+| ++. +|++|+.||.|+||++.+
T Consensus 283 -------~~~~~~~~~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 283 -------WKVFAKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------EEEEEEESCTTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred -------eEEEeccccccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence 1222 22357876 899999999 566 699999999999999865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=289.85 Aligned_cols=272 Identities=22% Similarity=0.418 Sum_probs=217.7
Q ss_pred eEEEEEe-ecCC-ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 106 VEIAQKI-RVDG-EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 106 ~~~~~~~-~h~~-~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++....+ +|.+ .|++++|+|++ .+||+|+.|++|+||++....... ......+|...|.+++|+|++. +|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~-----~~~~~~~h~~~v~~~~~sp~g~-~l~ 77 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWIC-----KSVLSEGHQRTVRKVAWSPCGN-YLA 77 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEE-----EEEECSSCSSCEEEEEECTTSS-EEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCccee-----eeeeccccCCcEEEEEECCCCC-EEE
Confidence 3444444 6887 99999999999 689999999999999987632110 1122368999999999999998 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccccCCC
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKE 260 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~ 260 (406)
+|+.|++|++|++.... ..++..+.+|...|.+++|+| ++++|++++.|+.|++||++.+.. +..+..|...
T Consensus 78 s~s~D~~v~iw~~~~~~----~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp EEETTSCEEEEEECCC-----EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred EEECCCcEEEEEccCCC----eEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 99999999999987642 234567788999999999999 789999999999999999987643 4556789999
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
|.+++|+|++. +|++|+.|+.|++||.+... .....+.+|...|.+++|+|+++ +|++++.|++|+|||........
T Consensus 153 v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 153 VKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp EEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTT
T ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCc
Confidence 99999999998 89999999999999998754 23567889999999999999997 69999999999999975433221
Q ss_pred cccc-ccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 340 LELD-AEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.... .......++..+.+ |...|.+++|+|++. .|++++.|+.|++|+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTT
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCC
Confidence 1100 00111233444554 888999999999999 5899999999999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=279.50 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=226.6
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.+..... . ....++.|.. ++.|.+|++.-.. .... .........+|...|
T Consensus 23 ~V~~~~~~~s~~~~-~-----d~~~l~sgs~-----D~~v~iWd~~~~~-~~~~-----------~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 23 WVTSIVAGFSQKEN-E-----DSPVLISGSR-----DKTVMIWKLYEEE-QNGY-----------FGIPHKALTGHNHFV 79 (343)
T ss_dssp CEEEEEECCCSSTT-C-----CCCEEEEEET-----TSCEEEEEECSSC-CSSB-----------SEEEEEEECCCSSCE
T ss_pred hhhheeeEEEeecC-C-----CCCEEEEEcC-----CCEEEEEECCcCC-cccc-----------cccccchhccCCCce
Confidence 56777774422111 0 1135555554 3678888776220 0000 012233455799999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .++++|+.|++|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++||+..
T Consensus 80 ~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~--------~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 80 SDLALSQEN-CFAISSSWDKTLRLWDLRTG--------TTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILG 149 (343)
T ss_dssp EEEEECSST-TEEEEEETTSEEEEEETTSS--------CEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSS
T ss_pred EEEEECCCC-CEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccC
Confidence 999999998 68999999999999999873 34677889999999999999998 999999999999999974
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCC---------CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKN---------ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.. .........|...|.+++|+|.. ..+|++++.||.|++||. ..+....+.+|...|++++|+|+
T Consensus 150 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 150 EC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp CE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTT
T ss_pred Cc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCC
Confidence 21 11111223688899999999854 268999999999999994 45556677889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. +|++|+.||.|++||++....+...+. +...|.+++|+|++. +++ ++.|+.|++||+......... .....+.
T Consensus 225 g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~~~-~~~~~~~ 299 (343)
T 2xzm_R 225 GK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAPVC-TIEAEPI 299 (343)
T ss_dssp SS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCSEE-ECCCCSG
T ss_pred CC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCceE-EeecCcc
Confidence 99 999999999999999976555455543 456799999999986 454 556888999999763321100 0000000
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.......+|...|.+++|+|+++ .|++|+.||.|++|++.++
T Consensus 300 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 300 TKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp GGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEEE
T ss_pred hhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEcc
Confidence 00011236888899999999999 5899999999999998764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=305.83 Aligned_cols=264 Identities=15% Similarity=0.256 Sum_probs=218.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
..+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+|+++ +|++++.+
T Consensus 55 ~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~------~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~~~ 126 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT------THILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRE 126 (611)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST------TCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSS
T ss_pred ecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCC------cceeeEeecccCCceEEEEECCCCC-EEEEEECCCC
Confidence 45899999999999999 68999999999999999752 1223457789999999999999998 88888765
Q ss_pred --CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 189 --NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
+.|++||.... ...+.+|...|++++|+|++...|++++.|+.|++||.++++....+.+|...|++++|
T Consensus 127 ~~~~v~~wd~~~~--------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f 198 (611)
T 1nr0_A 127 RFGHVFLFDTGTS--------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 198 (611)
T ss_dssp CSEEEEETTTCCB--------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred ceeEEEEeeCCCC--------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence 47888885331 24467899999999999965567999999999999999988888888999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
+|++. +|++|+.|+.|++||++++.. +..+. +|...|.+++|+|+++ +|++++.|++|++||+.+.....
T Consensus 199 spdg~-~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 199 NPDGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCC-EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceee
Confidence 99999 999999999999999987654 55553 7999999999999997 69999999999999998643221
Q ss_pred ccccc-----------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 340 LELDA-----------------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 340 ~~~~~-----------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..... ..........+.+|...|++++|+|+++ .|++++.|+.|++||+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Confidence 11000 0001234456679999999999999999 69999999999999998
Q ss_pred Cccc
Q 015484 391 DSIY 394 (406)
Q Consensus 391 ~~~~ 394 (406)
++..
T Consensus 355 ~~~~ 358 (611)
T 1nr0_A 355 TGIS 358 (611)
T ss_dssp TCCE
T ss_pred CCce
Confidence 8743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=289.18 Aligned_cols=257 Identities=19% Similarity=0.329 Sum_probs=205.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.|++|+|||+.... ......+.+|...|.+++|++. +. +|++|+.|
T Consensus 9 ~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~------~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D 80 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGG------QILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYD 80 (316)
T ss_dssp -----CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTE------EEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETT
T ss_pred cccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCC------cEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECC
Confidence 34799999999999998 689999999999999997632 1235678899999999999863 55 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc---cccccccCCCeeEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT---QQRVKAHEKEVNYL 264 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~i 264 (406)
++|++||++++.. .....+.+|...|++++|+|+. +.+|++++.||.|++||++.+.. ...+.+|...|.++
T Consensus 81 ~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 81 RKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp SCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred CEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 9999999987532 2234567899999999999953 67899999999999999987632 34557889999999
Q ss_pred EecCCC----------------CcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeEEEEEcCCC---CCEEEEEeC
Q 015484 265 SFNPYN----------------EWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVFQVEWDPNH---ETVLASSAD 323 (406)
Q Consensus 265 ~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~ 323 (406)
+|+|+. ..+|++|+.|+.|++||++... .++..+.+|...|.+++|+|++ ..+|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 999973 1289999999999999997543 2456788999999999999986 247999999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
||+|+||++........ .... +.+|...|.+++|+|+++ +|++++.|+.|+||+..
T Consensus 237 D~~v~iw~~~~~~~~~~-------~~~~---~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTW-------SPKL---LHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCC-------BCCE---EEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccch-------hhhh---hhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 99999999875211000 0112 245788999999999999 58999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=283.72 Aligned_cols=263 Identities=19% Similarity=0.335 Sum_probs=205.0
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eC-CCCCeeEEEecCCCCCeEEEecC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KG-HDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
...+|.+.|++++|+|+ +||+|+.||+|+||++.... ......+ .+ |...|.+++|+|++. +|++|+.
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 78 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSS-EEEEEET
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCC-EEEEEeC
Confidence 34579999999999985 79999999999999998631 1223334 34 999999999999988 9999999
Q ss_pred CCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC----cccccccccCCCee
Q 015484 188 DNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN----QTQQRVKAHEKEVN 262 (406)
Q Consensus 188 dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~ 262 (406)
|++|++||+...... .....+..+.+|...|.+++|+| ++.+|++++.|+.|++||++.. +.+..+.+|...|.
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999998653211 12234566788999999999999 6889999999999999999543 34556788999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCC-CEEEEEeCCCcEEEEeCCCCCcccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHE-TVLASSADDRRLMVWDLNRIGDEQL 340 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 340 (406)
+++|+|++. +|++|+.|+.|++||.+... .++..+.+|...|.+++|+|++. .+|++++.|++|++||+........
T Consensus 158 ~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 999999998 99999999999999987642 34778899999999999999832 3699999999999999875321100
Q ss_pred cccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
........+.+ |...|.+++|++++ +|++++.||.|+||++.++
T Consensus 237 ------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 ------QEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ------EEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETT
T ss_pred ------ceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC
Confidence 00123334444 88999999999765 5889999999999998765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=295.97 Aligned_cols=327 Identities=11% Similarity=0.092 Sum_probs=233.6
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceeEEEEEeecC--------------CCCCCCeEEEEEEeCCCCCCCCCCCCCCCCC
Q 015484 36 LEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHT--------------SEDFPNFLMIADAVLPTKDSESNVGGKNENP 101 (406)
Q Consensus 36 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~--------------~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~ 101 (406)
+..+..+++|.|+.... ...-..+++++|+.. +...++.|.||++.-. .
T Consensus 132 ~~~~V~sv~w~p~~~~~---~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~-----------~--- 194 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENT---DIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS-----------T--- 194 (524)
T ss_dssp CCC--CCCSCEEECCCC---SSCSSEEEEEEEEEC------------------CEEEEEEEEETT-----------T---
T ss_pred CCCceeEEEecccCCCC---ccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-----------C---
Confidence 46788899999964221 000023677777743 1234566777765521 0
Q ss_pred CCCCeEEEE-EeecCCceeEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEE
Q 015484 102 VIPKVEIAQ-KIRVDGEVNRARCMPQK-----PNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGL 172 (406)
Q Consensus 102 ~~~~~~~~~-~~~h~~~v~~i~~~p~~-----~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l 172 (406)
....... ...|.+.|++++|+|++ ..+||+++.||+|+|||+....... .....+...+.+|...|+++
T Consensus 195 --~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv 272 (524)
T 2j04_B 195 --LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF 272 (524)
T ss_dssp --CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE
T ss_pred --CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE
Confidence 1122222 33567999999999972 3689999999999999998643210 00123456788999999999
Q ss_pred EecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEE--EeeCCCC-CEEEEEecCCcEEEEECCCCc
Q 015484 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV--SWHLKNE-NLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~-~~l~~~~~dg~i~i~d~~~~~ 249 (406)
+|++. . .|++|+.||+|++||++++.. +...+..|...|.+| +|+| ++ .+|++++.|++|++||+++++
T Consensus 273 ~~s~~-~-~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSP-T-TVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSS-S-EEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCC-C-eEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCC
Confidence 99984 4 899999999999999987532 224567899999999 4666 44 899999999999999999988
Q ss_pred ccccccccCC--CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 250 TQQRVKAHEK--EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 250 ~~~~~~~~~~--~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
....+.+|.. .|.+++|+|++. .+++++.|++|++||++.... +..+.+|...|++|+|+|+++ +|++|+.||+|
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv 421 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHP-MVLAGSADGSL 421 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCC-BCEEEETTTEE
T ss_pred cccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCC-eEEEEECCCEE
Confidence 7777766653 588999999998 799999999999999998665 677888999999999999998 59999999999
Q ss_pred EEEeCCCCCccc-c------------ccc-ccCC----------------CCeeEEEecCCCCCeeeEEeCCCCC--cEE
Q 015484 328 MVWDLNRIGDEQ-L------------ELD-AEDG----------------PPELLFSHGGHKAKISDFSWNKNDP--WVI 375 (406)
Q Consensus 328 ~iwd~~~~~~~~-~------------~~~-~~~~----------------~~~~~~~~~~h~~~v~~~~~s~~~~--~~l 375 (406)
++||+...-... . ... ..++ ...++..+.+|...|.+|+|+|+++ ..+
T Consensus 422 ~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l 501 (524)
T 2j04_B 422 IITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCY 501 (524)
T ss_dssp ECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEE
T ss_pred EEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHH
Confidence 999975421000 0 000 0000 1334566778999999999999964 269
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
|+|+.||.|+||++...
T Consensus 502 Asg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 502 AFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEECTTSEEEEEECSCC
T ss_pred HhhccCceEEEEEcccc
Confidence 99999999999998765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=275.24 Aligned_cols=251 Identities=20% Similarity=0.334 Sum_probs=214.4
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+|++|+.||.|++|+..+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 18 ~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSN-LLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred EEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCC-EEEEECCCC
Confidence 345799999999999998 68999999999999999763 33567889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|++||+.++. .+..+..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..|...|.+++|+|+
T Consensus 88 ~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 88 TLKIWDVSSGK------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp EEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEECCCCc------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 99999998764 3456678999999999999 6889999999999999999999988888889999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. +|++++.||.|++||+++..........+...+..++|+|+++ +|++++.||.|++||++. .
T Consensus 161 ~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~--------------~ 224 (312)
T 4ery_A 161 GS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSK--------------G 224 (312)
T ss_dssp SS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTT--------------T
T ss_pred CC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCC--------------C
Confidence 98 9999999999999999986653333456677899999999997 699999999999999986 3
Q ss_pred eeEEEecCCCCCeee--EEeC-CCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISD--FSWN-KNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~--~~~s-~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+|...+.. ..++ +++. +|++|+.||.|++|++.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 225 KCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCE
T ss_pred cEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchh
Confidence 556666777655433 3444 4566 799999999999999987753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=278.77 Aligned_cols=274 Identities=18% Similarity=0.276 Sum_probs=212.8
Q ss_pred CeEEEE-EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQ-KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~-~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++.+.. ..+|.+.|++|+|+|+++.+||+|+.||+|+|||+...... ...+...+.+|...|.+++|+|++. +|+
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~dg~-~l~ 102 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---YGIPQRALRGHSHFVSDVVISSDGQ-FAL 102 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---SEEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---cceeeEEEeCCCCCEEEEEECCCCC-EEE
Confidence 344443 44799999999999987689999999999999999874321 1234567889999999999999998 999
Q ss_pred EecCCCeEEEEeCCCccCCce-------------------------------------eeeeeeeeccCccEEEEEeeCC
Q 015484 184 SGSHDNKICLWDVSALAQDKV-------------------------------------IDAMHVYEAHESVVEDVSWHLK 226 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~~~i~~i~~~p~ 226 (406)
+|+.|+.|++|+......... .........|...+..++|++.
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 999999999999876321000 0011223457788999999875
Q ss_pred C-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCe
Q 015484 227 N-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEV 305 (406)
Q Consensus 227 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 305 (406)
. ..++++++.|+.|++||+++++.+..+.+|...|++++|+|++. +|++|+.||.|++||+++... +..+.. ...|
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~~-~~~v 259 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH-LYTLDG-GDII 259 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEEC-SSCE
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce-eeeecC-CceE
Confidence 4 45678999999999999999999989999999999999999998 999999999999999998654 555554 5689
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEE
Q 015484 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 306 ~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~ 385 (406)
.++.|+|++. +++++.|+.|++||++........ ..........+|...|++++|+|+++ +|++|+.||.|+
T Consensus 260 ~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~ 331 (340)
T 4aow_A 260 NALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDEL-----KQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVR 331 (340)
T ss_dssp EEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEE-----CCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred EeeecCCCCc--eeeccCCCEEEEEECCCCeEEEec-----cccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEE
Confidence 9999999874 567777999999999863221111 01122334467899999999999999 689999999999
Q ss_pred EEeCCCcc
Q 015484 386 VWQMTDSI 393 (406)
Q Consensus 386 iw~~~~~~ 393 (406)
||++.+|.
T Consensus 332 iW~~~tGt 339 (340)
T 4aow_A 332 VWQVTIGT 339 (340)
T ss_dssp EEEEEC--
T ss_pred EEeCCCcC
Confidence 99998873
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=293.70 Aligned_cols=309 Identities=16% Similarity=0.308 Sum_probs=245.3
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCC-----CCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEee
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSE-----DFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIR 113 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~-----~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (406)
+..++.|.|+.. ..++.|+.... ..++.|.++++.... ..+....+.
T Consensus 14 ~v~~~~~sp~g~-----------~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~-----------------~~~~~~~~~ 65 (416)
T 2pm9_A 14 RTATFAWSHDKI-----------PLLVSGTVSGTVDANFSTDSSLELWSLLAAD-----------------SEKPIASLQ 65 (416)
T ss_dssp ESCBCCBCSSSS-----------CEEEEBCBSSCCCSSCCCCCCCEEEESSSGG-----------------GCSCSCCCC
T ss_pred hcceEeeCCCCC-----------CEEEEEecCcccccccCCCCeEEEEEccCCC-----------------CCcEEEEEe
Confidence 345677877421 24666654321 455778888655220 001122456
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+|++|+.||.|++|++..... .......+.+|...|.+++|+|++..+|++++.||.|++
T Consensus 66 ~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~i 140 (416)
T 2pm9_A 66 VDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANN----AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140 (416)
T ss_dssp CSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTS----CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEB
T ss_pred cCCceEEEEECCCC-CeEEEEccCCeEEEeecccccc----cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEE
Confidence 89999999999998 5899999999999999987321 123466778899999999999984449999999999999
Q ss_pred EeCCCccCCc---eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc------CCCeeEE
Q 015484 194 WDVSALAQDK---VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH------EKEVNYL 264 (406)
Q Consensus 194 wd~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~i 264 (406)
||+.+..... ..........|...|.+++|+|+++.+|++++.||.|++||+++++.+..+..+ ...|.++
T Consensus 141 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred EECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence 9998865110 011112345688999999999966899999999999999999999887777655 7889999
Q ss_pred EecCCCCcEEEEEeCCC---cEEEEeCCCCCCCcEEec-CCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 265 SFNPYNEWVLATASSDT---TVALFDMRKMTVPLHILS-SHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
+|+|++..++++++.|+ .|++||+++...++..+. .|...|.+++|+| +++ +|++++.||.|++||+..
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~----- 294 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES----- 294 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS-----
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC-----
Confidence 99999866999999998 999999998766788888 8999999999999 665 699999999999999986
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...+..+.+|...|.+++|+|+++.+|++++.|+.|++|++.+....
T Consensus 295 ---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 295 ---------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp ---------CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ---------CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 35667778899999999999999448999999999999999887543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=293.29 Aligned_cols=270 Identities=14% Similarity=0.243 Sum_probs=207.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|...|++|+|+|.++.+||+|+.||.|+|||+.... ......+.+|.+.|++|+|+|.+..+|++|+.||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 457899999999999777899999999999999998732 23345567899999999999865449999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
|++||++... +........+...+.+++|+| ++.+|++|+.||.|++||++. +.+..+.+|...|++++|+|++
T Consensus 189 v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 189 TRLQDFKGNI----LRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EEEEETTSCE----EEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTC
T ss_pred EEEeeccCCc----eeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCC
Confidence 9999997642 222222233445678999999 789999999999999999874 5567788899999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc-----
Q 015484 271 EWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD----- 343 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----- 343 (406)
+.+|++|+.|+.|++||+++.... +....+|...|++++|+|++. +|++++.||.|+|||+...........
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 889999999999999999876532 334467999999999999997 699999999999999976432111000
Q ss_pred ----------------------cc----------C---------CCCeeEEE-ecCCCCCeeeE-EeCCCCCcEEEEEeC
Q 015484 344 ----------------------AE----------D---------GPPELLFS-HGGHKAKISDF-SWNKNDPWVISSVAD 380 (406)
Q Consensus 344 ----------------------~~----------~---------~~~~~~~~-~~~h~~~v~~~-~~s~~~~~~l~s~~~ 380 (406)
.. + ....++.. ..+|...|.++ +|+|+|. +|++|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~lasg~- 419 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLASAM- 419 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CEEEEC-
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EEEEEc-
Confidence 00 0 01122222 24677788887 6999999 577765
Q ss_pred CCcEEEEeCCCcccC
Q 015484 381 DNTVQVWQMTDSIYR 395 (406)
Q Consensus 381 dg~i~iw~~~~~~~~ 395 (406)
|+.|+||++.++..+
T Consensus 420 d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 GYHILIWSQQEARTR 434 (435)
T ss_dssp SSEEEECCCC-----
T ss_pred CCcEEEEECCcCeee
Confidence 889999999987643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=271.22 Aligned_cols=247 Identities=21% Similarity=0.388 Sum_probs=210.5
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|.+++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 60 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~ 129 (312)
T 4ery_A 60 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDE 129 (312)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTS
T ss_pred hhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence 345799999999999998 68999999999999999873 44677889999999999999988 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~ 268 (406)
.|++||++++. .+..+..|..+|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..+...+..++|+|
T Consensus 130 ~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 130 SVRIWDVKTGK------CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp CEEEEETTTCC------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred cEEEEECCCCE------EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 99999998764 2355677889999999999 6889999999999999999998876665 44567899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF--QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~--~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+++ +|++++.||.|++||+++... +..+.+|...+. ...+++.+..+|++|+.||.|++||+..
T Consensus 203 ~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~------------ 268 (312)
T 4ery_A 203 NGK-YILAATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT------------ 268 (312)
T ss_dssp TSS-EEEEEETTTEEEEEETTTTEE-EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT------------
T ss_pred CCC-EEEEEcCCCeEEEEECCCCcE-EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC------------
Confidence 999 899999999999999998654 677777766433 2345544445799999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe--CCCcEEEEeCC
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVA--DDNTVQVWQMT 390 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~--~dg~i~iw~~~ 390 (406)
..++..+.+|...|.+++|+|+++ ++++++ .|+.|++|+..
T Consensus 269 --~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 --KEIVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --CCEEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred --chhhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence 466778889999999999999999 688876 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-37 Score=283.25 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=209.8
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC------------------CCC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG------------------HDK 167 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------h~~ 167 (406)
.++.+.++|.+.|++++|+|++ .+||+|+ ++.++||++.+... ...+.. +..
T Consensus 55 ~~~~~~~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
T 1erj_A 55 VELHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSL--------VARLSDDSAANKDPENLNTSSSPSSDL 124 (393)
T ss_dssp EEEEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCE--------EEEECC-----------------CCCC
T ss_pred ceeEEecCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCE--------EEEecCccccccccccccccccCCCce
Confidence 3455667899999999999999 5788876 68899999987432 222222 233
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.|.+++|+|++. +|++|+.||.|++||+.+++ ....+.+|...|.+++|+| ++..|++++.|+.|++||+++
T Consensus 125 ~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 125 YIRSVCFSPDGK-FLATGAEDRLIRIWDIENRK------IVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp BEEEEEECTTSS-EEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc------EEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 599999999998 99999999999999998753 2356678999999999999 678899999999999999999
Q ss_pred CcccccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-------cCCCCCeEEEEEcCCCCCEEE
Q 015484 248 NQTQQRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHIL-------SSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~h~~~v~~i~~~p~~~~~l~ 319 (406)
++....+. +...+.+++|+| ++. +|++|+.||.|++||+++... +..+ .+|...|.+++|+|+++ +|+
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~ 272 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-SVV 272 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-EEE
T ss_pred CeeEEEEE-cCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCC-EEE
Confidence 88776665 567799999999 666 999999999999999987653 4443 57899999999999997 699
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++.||.|++||++.......... .....+...+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKT--PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp EEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC
T ss_pred EEeCCCEEEEEECCCCCCcccccC--CCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe
Confidence 999999999999986432211100 111245566789999999999999999 68999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=284.76 Aligned_cols=244 Identities=20% Similarity=0.339 Sum_probs=207.9
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...|++++|+|++ .+||+|+.||.|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++
T Consensus 122 ~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~i 191 (393)
T 1erj_A 122 SDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRI 191 (393)
T ss_dssp CCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CceeEEEEEECCCC-CEEEEEcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEE
Confidence 44569999999999 68999999999999999873 33667889999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------cccCCCeeEEEe
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------KAHEKEVNYLSF 266 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~i~~ 266 (406)
||+.++... ..+ .+...+.+++|+|.++.+|++++.||.|++||++++..+..+ .+|...|.+++|
T Consensus 192 wd~~~~~~~------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 192 WDLRTGQCS------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp EETTTTEEE------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred EECCCCeeE------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 999876432 222 356789999999978899999999999999999998776555 568899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+|++. +|++|+.|+.|++||++.... ....+.+|...|.+++|+|++. +|++|+.||.|++||+..
T Consensus 265 ~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~- 341 (393)
T 1erj_A 265 TRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKS- 341 (393)
T ss_dssp CTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTT-
T ss_pred CCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCC-
Confidence 99998 999999999999999986432 2346778999999999999997 699999999999999986
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCC------CCCcEEEEEeCCCcEEEEeCCC
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK------NDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
...+..+.+|...|.+++|++ ++. +|++|+.||.|+||++..
T Consensus 342 -------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 342 -------------GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -------------CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred -------------CeEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECcccc
Confidence 355677889999999999986 566 799999999999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=292.18 Aligned_cols=342 Identities=15% Similarity=0.216 Sum_probs=245.1
Q ss_pred HhhhhhhcChhHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCC
Q 015484 16 EFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVG 95 (406)
Q Consensus 16 ~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~ 95 (406)
..++|.-...-....+......-+..++.|.|+.. .++.|.. ++.|.++++.-. .
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~~~~~-----dg~v~vw~~~~~------~-- 100 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK------------IIAGALD-----NGSLELYSTNEA------N-- 100 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS------------CEEEEES-----SSCEEEECCSST------T--
T ss_pred eEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC------------eEEEEcc-----CCeEEEeecccc------c--
Confidence 35667655443222233333445778999977421 4555554 356777754421 0
Q ss_pred CCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEe
Q 015484 96 GKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSW 174 (406)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~ 174 (406)
. +.-......+|.+.|++++|+|++..+|++++.||.|++||+......... .......+..|...|.+++|
T Consensus 101 -~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 101 -N------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp -S------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred -c------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 0 111334455799999999999985578999999999999999875311000 01112234679999999999
Q ss_pred cCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCC-cc
Q 015484 175 SPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTN-QT 250 (406)
Q Consensus 175 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~-~~ 250 (406)
+|++..+|++++.||.|++||++++.....+.......+|...|.+++|+|++..++++++.|+ .|++||++++ ..
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~ 253 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP 253 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC
Confidence 9995559999999999999999886432221111111122788999999996668999999998 9999999986 56
Q ss_pred ccccc-ccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 251 QQRVK-AHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 251 ~~~~~-~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
...+. +|...|.+++|+| ++. +|++++.||.|++||+++.+. +..+..|...|.+++|+|+++.+|++++.||.|+
T Consensus 254 ~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 254 LQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred cEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 67777 8999999999999 666 999999999999999998654 8888999999999999999955899999999999
Q ss_pred EEeCCCCCccccccc---ccCCCCeeEEEec------------------CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 329 VWDLNRIGDEQLELD---AEDGPPELLFSHG------------------GHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 329 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~------------------~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
+||+........... ....+....+... .|..++.+++|+|+|+ +|++++.|+.|+||
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w 410 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSIT 410 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCB
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEE
Confidence 999987554332211 1111122222222 2677888999999999 79999999999999
Q ss_pred eCCCc
Q 015484 388 QMTDS 392 (406)
Q Consensus 388 ~~~~~ 392 (406)
++.++
T Consensus 411 ~~~~~ 415 (416)
T 2pm9_A 411 NPKIS 415 (416)
T ss_dssp CCCCC
T ss_pred EeccC
Confidence 99864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=277.95 Aligned_cols=300 Identities=16% Similarity=0.228 Sum_probs=231.4
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-|..++.|.|+.... . ..++.+... +.|.++++... ... ..+.......|.+
T Consensus 18 ~~~v~~i~~~p~~~~~----~----~~~~~~~~~-----~~v~vw~~~~~---~~~-----------~~~~~~~~~~~~~ 70 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEG----D----PLVFATVGS-----NRVTLYECHSQ---GEI-----------RLLQSYVDADADE 70 (366)
T ss_dssp CSCEEEEEECTTCCTT----S----CEEEEEEET-----TEEEEEEECGG---GCE-----------EEEEEEECSCTTC
T ss_pred CCceEEEEEecccCCC----C----ceEEEECCC-----CEEEEEEcCCC---cEE-----------EeeeeccccCCCC
Confidence 4488899999862211 0 134444432 46888876621 000 0122222223779
Q ss_pred ceeEEEEcCCCC---cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKP---NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~ 192 (406)
.|++++|+|++. .+|++|+.||.|++||+.+. .....+.+|...|.+++|+| ++. +|++|+.||.|+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~ 141 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALR 141 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEE
Confidence 999999999832 58999999999999999873 44677889999999999999 666 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc----------------
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---------------- 256 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------- 256 (406)
+||+.++... ..+..+..|...|.+++|+| ++.+|++++.||.|++||+++++....+..
T Consensus 142 iwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 142 LWNIQTDTLV---AIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQ 217 (366)
T ss_dssp EEETTTTEEE---EEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCE
T ss_pred EEEeecCeEE---EEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccce
Confidence 9999876421 11112257899999999999 788999999999999999998776555443
Q ss_pred ------------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------CcEEecCCCCCeEEEEEc
Q 015484 257 ------------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-------------PLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 257 ------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~~~~h~~~v~~i~~~ 311 (406)
|...|.+++|+ +. +|++++.||.|++||+++... .+..+..|...|.+++|+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred eeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 88999999999 55 899999999999999987643 256677889999999999
Q ss_pred CC--CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 312 PN--HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 312 p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
|+ ++ +|++++.||.|++||+...... ......+.+| ...|.+++|+|+++ +|++++.||.|++|
T Consensus 295 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 362 (366)
T 3k26_A 295 MDFWQK-MLALGNQVGKLYVWDLEVEDPH----------KAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRW 362 (366)
T ss_dssp ECTTSS-EEEEECTTSCEEEEECCSSSGG----------GCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred CCCCCc-EEEEEecCCcEEEEECCCCCCc----------cccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEE
Confidence 99 76 7999999999999999874321 1244455666 78999999999999 69999999999999
Q ss_pred eCCC
Q 015484 388 QMTD 391 (406)
Q Consensus 388 ~~~~ 391 (406)
|+.+
T Consensus 363 d~~~ 366 (366)
T 3k26_A 363 DRLR 366 (366)
T ss_dssp EC--
T ss_pred EecC
Confidence 9863
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=273.97 Aligned_cols=308 Identities=16% Similarity=0.238 Sum_probs=235.7
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+.. ..++.|+. ...++.|.++++.- ++.......+|.+
T Consensus 18 ~~~v~~~~~~p~~~-----------~l~~~~s~--~~~d~~v~iw~~~~------------------~~~~~~~~~~~~~ 66 (357)
T 3i2n_A 18 NYTVFDCKWVPCSA-----------KFVTMGNF--ARGTGVIQLYEIQH------------------GDLKLLREIEKAK 66 (357)
T ss_dssp SSCEEEEEECTTSS-----------EEEEEEC----CCCEEEEEEEECS------------------SSEEEEEEEEESS
T ss_pred CCceEEEEEcCCCc-----------eEEEecCc--cCCCcEEEEEeCCC------------------CcccceeeecccC
Confidence 34788999988421 12334433 12357888887661 2344566678999
Q ss_pred ceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEe------cCCCCCeEEEecCC
Q 015484 117 EVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSW------SPFKEGYLVSGSHD 188 (406)
Q Consensus 117 ~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~d 188 (406)
.|++++|+|++ ..+|++|+.||.|++|++.... .+...+.+|...|.+++| +|++. +|++|+.|
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d 138 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRD 138 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETT
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCC
Confidence 99999999983 3689999999999999998732 257788899999999955 67777 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeecc----CccEEEEE----eeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAH----ESVVEDVS----WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~----~~~i~~i~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 260 (406)
|.|++||+..+... ...+..| ...+.+++ |+| ++.++++++.||.|++||+++++.... ..+...
T Consensus 139 ~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 211 (357)
T 3i2n_A 139 GTVKVWDPRQKDDP-----VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG 211 (357)
T ss_dssp SCEEEECTTSCSSC-----SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC
T ss_pred CeEEEEeCCCCCCc-----ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-cCCCCc
Confidence 99999999886521 1233333 33788888 666 788999999999999999998876443 557889
Q ss_pred eeEEEecC---CCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 261 VNYLSFNP---YNEWVLATASSDTTVALFDMRKMTVPLHIL-----SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 261 v~~i~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
|.+++|+| ++. +|++++.||.|++||++.... +..+ ..|...|.+++|+|+++.+|++++.||.|++||+
T Consensus 212 v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 212 VCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence 99999999 777 899999999999999987554 3333 3899999999999999767999999999999999
Q ss_pred CCCCcccccccc-----cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 333 NRIGDEQLELDA-----EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 333 ~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+........... ..+....+..+.+|...|.+++|+|++++++++++.||.|+||++.+.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 864432111000 011225677888999999999999999975558999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=274.69 Aligned_cols=275 Identities=19% Similarity=0.278 Sum_probs=220.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.||.|+||++..... .......+.+|...|.+++|+|. +. +|++|+.|
T Consensus 7 ~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~d 80 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYD 80 (351)
T ss_dssp ECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred CcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCC
Confidence 35799999999999998 6899999999999999986321 11335667899999999999994 66 99999999
Q ss_pred CeEEEEeCCCccCC---ceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCccccccc---------
Q 015484 189 NKICLWDVSALAQD---KVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVK--------- 255 (406)
Q Consensus 189 g~i~iwd~~~~~~~---~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 255 (406)
|.|++||++.+... .....+..+..|...|.+++|+|.. +.+|++++.||.|++||+++++.+..+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999876432 1224456677899999999999932 8899999999999999999887665542
Q ss_pred ----ccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCC---CEEEEEeCC
Q 015484 256 ----AHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHE---TVLASSADD 324 (406)
Q Consensus 256 ----~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~---~~l~s~~~d 324 (406)
.+...+.+++|+|+ +. ++++++.++.+.+|+...... .+..+.+|...|++++|+|++. .+|++++.|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 57788999999997 66 999999999998887766442 2567788999999999999982 379999999
Q ss_pred CcEEEEeCCCCCcccccccc--------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 325 RRLMVWDLNRIGDEQLELDA--------------------------------EDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
|.|++||++........... .......+..+.+|...|++++|+|+++
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 99999999864221111000 0011256777889999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCcc
Q 015484 373 WVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+|++++.||.|+||++.++.
T Consensus 320 -~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 -ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -CEEEEETTSCEEEEEECTTS
T ss_pred -EEEEecCCCcEEEEecCcCc
Confidence 68999999999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=271.78 Aligned_cols=254 Identities=16% Similarity=0.252 Sum_probs=203.4
Q ss_pred EeecCCceeEEEE-----cC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARC-----MP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~-----~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
..+|.+.|++++| ++ ++ .+|++|+.|++|+||++....... ....+...+.+|...|.+++|+|++. +|++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s 93 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENC-FAIS 93 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTT-EEEE
T ss_pred eccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCC-EEEE
Confidence 4479999999999 76 55 789999999999999987632110 01223567889999999999999988 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~ 262 (406)
|+.|++|++||+.++. .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+....... ....|...|.
T Consensus 94 ~s~D~~v~lwd~~~~~------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGT------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp EETTSEEEEEETTSSC------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred EcCCCcEEEEECCCCc------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence 9999999999998864 2456778999999999999 68889999999999999998433221 2236888999
Q ss_pred EEEecCCCC---------cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 263 YLSFNPYNE---------WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 263 ~i~~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
+++|+|++. .+|++++.||.|++||.+ ......+..|...|.+++|+|+++ +|++|+.||.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESS
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECC
Confidence 999999872 389999999999999954 233667889999999999999997 69999999999999995
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.... ....+ .+...|.+++|+|+++ ++++ +.|+.|++|++.++.
T Consensus 244 ~~~~-------------~~~~~-~~~~~v~~v~~sp~~~-~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 244 NLTY-------------PQREF-DAGSTINQIAFNPKLQ-WVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp CCSS-------------CSEEE-ECSSCEEEEEECSSSC-EEEE-EESSCEEEEESSSCC
T ss_pred CCcc-------------cceee-cCCCcEEEEEECCCCC-EEEE-ECCCCEEEEEeCCCC
Confidence 4221 11111 1345699999999998 5654 558889999998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=290.59 Aligned_cols=241 Identities=24% Similarity=0.435 Sum_probs=212.4
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.....+|...|.+++|+|++ .+|++|+.||.|++|+... .....+.+|...|.+++|+|++. +|++++.
T Consensus 337 ~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~---------~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~ 405 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQ-TIASASD 405 (577)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC---------CEEEEEECCSSCEEEEEECTTSS-CEEEEET
T ss_pred eEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC---------CEEEEecCCCCCeEEEEECCCCC-EEEEEeC
Confidence 34456799999999999999 6899999999999999653 33667889999999999999998 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|+.|++||... +.+..+..|...|.+++|+| ++.+|++++.|+.|++||+ +++.+..+.+|...|++++|+
T Consensus 406 d~~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s 476 (577)
T 2ymu_A 406 DKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 476 (577)
T ss_dssp TSEEEEECTTC-------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred CCEEEEEeCCC-------CEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence 99999999643 12456678999999999999 6889999999999999996 466777888899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCC
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
|++. +|++++.|+.|++||.. ...+..+.+|...|++++|+|+++ +|++++.||.|+|||...
T Consensus 477 pd~~-~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~------------- 539 (577)
T 2ymu_A 477 PDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG------------- 539 (577)
T ss_dssp TTSC-EEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTS-------------
T ss_pred CCCC-EEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCC-------------
Confidence 9999 99999999999999964 344788999999999999999997 599999999999999643
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+++..+.+|...|++++|+|+++ +|+|++.|+.|++||
T Consensus 540 --~~~~~~~~h~~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 --QLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred --CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence 56777889999999999999999 488999999999997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=264.80 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=218.4
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee--CCCCCeeEEEecCCCCCeE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l 182 (406)
........+|.+.|++++|+|++ .+|++++ ||.|++|++..... ......+. +|...|.+++|+|++. +|
T Consensus 41 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 112 (337)
T 1gxr_A 41 HARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGC-TL 112 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTC-----CSCSEEEECSCTTSBEEEEEECTTSS-EE
T ss_pred ccccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCc-----eeeeecccccCCCCcEEEEEEcCCCC-EE
Confidence 34556677899999999999999 5788888 99999999987432 22344444 7899999999999888 99
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++++.||.|++||+.++.. .....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+..|...+.
T Consensus 113 ~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp EEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEcCCCcEEEEECCCCCc----ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 9999999999999987542 22355667889999999999 788999999999999999999998888888999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+++|+|++. +|++++.||.|++||+++... +..+ .+...+.+++|+|+++ +|++++.||.|++||+...
T Consensus 188 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~------- 256 (337)
T 1gxr_A 188 CIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP------- 256 (337)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS-------
T ss_pred EEEECCCCC-EEEEEecCCcEEEEECCCCce-Eeee-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC-------
Confidence 999999998 899999999999999998653 4443 4788999999999997 6999999999999999862
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.......|...|.+++|+|+++ +|++++.||.|++|++.++..
T Consensus 257 --------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 257 --------DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp --------CEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred --------CeEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeE
Confidence 2345677899999999999999 689999999999999988754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=271.63 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=217.5
Q ss_pred EeecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc-----eeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD-----LRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
..+|.+.|++++|+| ++ .+||+|+.||.|+||++.............. ....+|...|.+++|+|++..+|++
T Consensus 39 ~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp CCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 346999999999999 77 7899999999999999987433110000000 0012599999999999955449999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC--CCEEEEEecCCcEEEEECCCCcccccccccCCCee
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN--ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVN 262 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 262 (406)
++.||.|++||+.++... ..+ .+...+.++.|+|.+ +.++++++.||.|++||+++++.+..+..|...|.
T Consensus 118 ~~~d~~i~iwd~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTA------DVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp EETTSEEEEEETTTTEEE------EEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred EeCCCeEEEeeCCCCccc------eec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 999999999999886432 222 367789999998853 34899999999999999999999889999999999
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe---------------cCCCCCeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 263 YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL---------------SSHTEEVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------~~h~~~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+++|+|++..+|++|+.||.|++||++....++..+ ..|...|.+++|+|+++ +|++++.||.|
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 269 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRM 269 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeE
Confidence 999999998779999999999999999876555555 57889999999999997 69999999999
Q ss_pred EEEeCCCCCcccccccc---------------------------------cCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 328 MVWDLNRIGDEQLELDA---------------------------------EDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
++||+............ .......+..+.+|...|++++|+|+++ +
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 348 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-E 348 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-E
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-E
Confidence 99999875432211000 0012356677788999999999999999 6
Q ss_pred EEEEeCCCcEEEEeCCCcccCC
Q 015484 375 ISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
|++++.||.|++|++.++...+
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEEETTSCEEEEEECC-----
T ss_pred EEEECCCCeEEEEeCCCCCccC
Confidence 9999999999999999876543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=292.40 Aligned_cols=246 Identities=17% Similarity=0.328 Sum_probs=207.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+.+.+.+++|+|++ .+||+++ ++.|+||++.+. .....+.+|...|++++|+|+|. +|++|+.||+|++
T Consensus 17 ~~g~~~~~~~spdg-~~l~~~~-~~~v~l~~~~~~--------~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~l 85 (611)
T 1nr0_A 17 ARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSL--------TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRI 85 (611)
T ss_dssp CTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCS--------SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred ccCceeEEeeCCCC-CEEEeCC-CCEEEEecCCCc--------ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEE
Confidence 46889999999999 5788887 569999999762 34678899999999999999998 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
||+.++... ....+..|...|.+++|+| ++..|++++.+ +.|++|| .++....+.+|...|++++|+|+
T Consensus 86 Wd~~~~~~~----~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 86 WDTTQTTHI----LKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp EESSSTTCC----EEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSS
T ss_pred eECCCCcce----eeEeecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCC
Confidence 999754321 2345678999999999999 57777777754 4688887 45667778899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
++..|++|+.|+.|++||.+..+. +..+.+|...|.+++|+|+++ +|++++.|++|++||+....
T Consensus 159 ~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~------------- 223 (611)
T 1nr0_A 159 RPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGT------------- 223 (611)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-------------
T ss_pred CCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCc-------------
Confidence 886799999999999999887543 678899999999999999997 79999999999999987632
Q ss_pred eeEEEe-------cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSH-------GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~-------~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+..+ .+|...|.+++|+|+++ +|++++.|+.|++||+.++..
T Consensus 224 -~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 224 -KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp -EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE
T ss_pred -EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCce
Confidence 22233 17999999999999999 699999999999999987643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=275.20 Aligned_cols=258 Identities=21% Similarity=0.303 Sum_probs=212.8
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+||+|+.||.|+||++... .......+.+|...|++++|+++ +. +|++|+.|
T Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d 78 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 78 (379)
T ss_dssp EEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETT
T ss_pred ecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCC------cceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccC
Confidence 45799999999999998 68999999999999999742 13346678899999999999976 66 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|.|++||+.++. ......+..|...|.+++|+|.. +.+|++++.||.|++||++.+.. ...+..|...|.+++
T Consensus 79 g~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 79 GKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp SCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred CEEEEEEcCCCc----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999999998753 22345667789999999999942 78999999999999999998754 334567899999999
Q ss_pred ecC-------------CCCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCC--CCEEEEEeCCCcE
Q 015484 266 FNP-------------YNEWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNH--ETVLASSADDRRL 327 (406)
Q Consensus 266 ~~~-------------~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~--~~~l~s~~~dg~i 327 (406)
|+| ++. +|++++.||.|++||++.... ....+..|...|.+++|+|++ ..+|++++.||.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp ECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 999 466 999999999999999987653 245678899999999999993 2479999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++||+....... ...+.....|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus 234 ~iwd~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 234 IIWTQDNEQGPW---------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEESSTTSCC---------EEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCCccc---------eeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCC
Confidence 999998733211 112222244788999999999999 588889999999999873
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=268.15 Aligned_cols=261 Identities=17% Similarity=0.234 Sum_probs=218.9
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
...+.....+|.+.|++++|+|++ .+|++|+.||.|+|||+.+. .....+.+|...|.+++|+|++. +|+
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~ 90 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTK-YCV 90 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred cccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCC-EEE
Confidence 446667778899999999999998 68999999999999999873 44677889999999999999888 999
Q ss_pred EecCCCeEEEEeCCCccCCceee---------------------------------------------------eeeeee
Q 015484 184 SGSHDNKICLWDVSALAQDKVID---------------------------------------------------AMHVYE 212 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~---------------------------------------------------~~~~~~ 212 (406)
+++.||.|++||+.+++....+. ....+.
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 99999999999998754321110 001111
Q ss_pred ccCc--cEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 213 AHES--VVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 213 ~~~~--~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.|.. .+.+++|+| ++.+|++++.||.|++||+++ .+.+..+..|...|.+++|+|++. +|++++.||.|++||++
T Consensus 171 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 171 THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVS 248 (369)
T ss_dssp CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECC
Confidence 2222 788899998 678899999999999999998 677778888999999999999998 89999999999999999
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--------------cEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--------------RLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+... +..+. +...+..++|+|+++ ++++++.++ .+++||+.. ...+..+
T Consensus 249 ~~~~-~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~ 311 (369)
T 3zwl_B 249 TLQV-LKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIF--------------EEEIGRV 311 (369)
T ss_dssp TCCE-EEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTT--------------CCEEEEE
T ss_pred CCce-eeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCC--------------Ccchhhe
Confidence 8654 55554 788999999999997 588888887 899999876 4566677
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+|...|.+++|+|+++ +|++++.||.|++|++.++.+
T Consensus 312 ~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 312 QGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHH
T ss_pred ecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccc
Confidence 88999999999999999 799999999999999998754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=259.80 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=231.0
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+. ..++.|. ++.+.++++.-. .. ...+.......|..
T Consensus 51 ~~~v~~~~~~~~~------------~~l~~~~------dg~i~iw~~~~~---------~~-----~~~~~~~~~~~~~~ 98 (337)
T 1gxr_A 51 GEVVCAVTISNPT------------RHVYTGG------KGCVKVWDISHP---------GN-----KSPVSQLDCLNRDN 98 (337)
T ss_dssp SSCCCEEEECSSS------------SEEEEEC------BSEEEEEETTST---------TC-----CSCSEEEECSCTTS
T ss_pred CCceEEEEEecCC------------cEEEEcC------CCeEEEEECCCC---------Cc-----eeeeecccccCCCC
Confidence 3467778887631 1444443 367888765422 00 12233344447999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+|++ .+|++++.||.|++|++.... ......+..|...|.+++|+|++. +|++++.||.|++||+
T Consensus 99 ~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 99 YIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDL 170 (337)
T ss_dssp BEEEEEECTTS-SEEEEEESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCC------cceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeC
Confidence 99999999998 689999999999999998742 223567788999999999999888 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.+++ ....+..|...|.+++|+| ++.++++++.||.|++||+++++.+..+. +...+.+++|+|++. +|++
T Consensus 171 ~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~ 241 (337)
T 1gxr_A 171 HNQT------LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE-WLAV 241 (337)
T ss_dssp TTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS-EEEE
T ss_pred CCCc------eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCC-EEEE
Confidence 8753 2355667899999999999 67899999999999999999988776664 678899999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++.++.|++||++... ...+..|...|.+++|+|+++ +|++++.||.|++||+... ..+. ..
T Consensus 242 ~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~--------------~~~~-~~ 303 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG--------------ASIF-QS 303 (337)
T ss_dssp EETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC--------------CEEE-EE
T ss_pred EcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCC--------------eEEE-Ee
Confidence 9999999999999754 457788999999999999997 6999999999999999872 2222 23
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.|...|.+++|+|+++ +|++++.||.|++|++
T Consensus 304 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred cCCCcEEEEEECCCCC-EEEEecCCCeEEEEEE
Confidence 4778899999999999 6899999999999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=270.30 Aligned_cols=256 Identities=19% Similarity=0.338 Sum_probs=214.4
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
........|.+.|++++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+ +. +|++|
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~--~~-~l~~~ 192 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQ--------TKLRTMAGHQARVGCLSWN--RH-VLSSG 192 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEEE--TT-EEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCC--------eEEEEecCCCCceEEEEEC--CC-EEEEE
Confidence 4444455689999999999988 68999999999999999873 3467788999999999994 45 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
+.||.|++||++.... ....+..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..|...|.+++
T Consensus 193 ~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 193 SRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266 (401)
T ss_dssp ETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred cCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence 9999999999985432 2456678999999999999 788999999999999999999988888888999999999
Q ss_pred ecCCCCcEEEEEe--CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCcEEEEeCCCCCccccc
Q 015484 266 FNPYNEWVLATAS--SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS--SADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 266 ~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~ 341 (406)
|+|++..++++++ .|+.|++||+++... +..+. +...|.+++|+|+++. +++ |+.||.|++||+....
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~----- 338 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSG----- 338 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTE-----
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcc-----
Confidence 9998887888876 799999999998654 55554 6788999999999984 666 4489999999987621
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
......+.+|...|.+++|+|+++ +|++++.||.|++|++.++...
T Consensus 339 -------~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 339 -------LTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp -------EEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC----
T ss_pred -------ceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCccc
Confidence 233445678999999999999999 6999999999999999887543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=272.65 Aligned_cols=298 Identities=15% Similarity=0.197 Sum_probs=233.0
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCc
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGE 117 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 117 (406)
-+..+++|.| . .++.|+. ++.|.++++.-. .... +.........|...
T Consensus 17 ~~i~~~~~~~----~----------~l~s~~~-----dg~i~iw~~~~~---~~~~----------~~~~~~~~~~h~~~ 64 (397)
T 1sq9_A 17 ADIFSVSACN----S----------FTVSCSG-----DGYLKVWDNKLL---DNEN----------PKDKSYSHFVHKSG 64 (397)
T ss_dssp SCEEEEEECS----S----------EEEEEET-----TSEEEEEESBCC---TTCC----------GGGGEEEEECCTTC
T ss_pred cCeEEEEecC----C----------eEEEEcC-----CCEEEEEECCCc---cccc----------CCCcceEEecCCCc
Confidence 3778899965 1 5666654 378888876522 0000 11123445589999
Q ss_pred eeEEEEcCC----C--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-----CCCeeEEEec----CCCCCe-
Q 015484 118 VNRARCMPQ----K--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-----DKEGYGLSWS----PFKEGY- 181 (406)
Q Consensus 118 v~~i~~~p~----~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----~~~~~~- 181 (406)
|++++|+|+ + ..+|++++.||.|++|++...... .......+..| ...|.+++|+ |++. +
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 140 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET---KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HR 140 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT---CCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc---ccccceeecccccccCCCcEEEEEEeeccCCCCc-eE
Confidence 999999998 4 047999999999999999873210 00015567778 5899999999 9888 8
Q ss_pred EEEecCCCeEEEEeCCC------ccCCceeeeeeee-------eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 182 LVSGSHDNKICLWDVSA------LAQDKVIDAMHVY-------EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
|++|+.||.|++||+.. ..... +.+...+ ..|...|.+++|+| ++ ++++++.||.|++||++++
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTT
T ss_pred EEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCC
Confidence 99999999999999988 44332 1111134 34788999999999 45 9999999999999999999
Q ss_pred cccccccc---c---CCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecC-------------CCCCeE
Q 015484 249 QTQQRVKA---H---EKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSS-------------HTEEVF 306 (406)
Q Consensus 249 ~~~~~~~~---~---~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~-------------h~~~v~ 306 (406)
+.+..+.. | ...|.+++|+|++. +|++++.| |.|++||+++... +..+.. |...|.
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEE
Confidence 88888887 8 99999999999998 89999999 9999999998654 777877 999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec------CC---------------CCCeeeE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG------GH---------------KAKISDF 365 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~v~~~ 365 (406)
+++|+|+++ +|++++.||.|++||+.. ...+..+. +| ...|.++
T Consensus 296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 296 SLSFNDSGE-TLCSAGWDGKLRFWDVKT--------------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp EEEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred EEEECCCCC-EEEEEeCCCeEEEEEcCC--------------CceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 999999997 699999999999999986 34555555 66 8999999
Q ss_pred EeCCCC----------CcEEEEEeCCCcEEEEeCCCc
Q 015484 366 SWNKND----------PWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 366 ~~s~~~----------~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+|+|++ + +|++++.||.|++|++.++
T Consensus 361 ~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC-
T ss_pred Eeccccccccccccccc-eEEEecCCCcEEEEEcCCC
Confidence 999998 5 7999999999999999876
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=289.11 Aligned_cols=304 Identities=16% Similarity=0.192 Sum_probs=224.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+.. ..++.|.. ++.|.+|++.-. ... .........+|.+.|
T Consensus 384 ~V~~v~~~~~~~-----------~~l~s~s~-----D~~i~~W~~~~~--~~~------------~~~~~~~~~~h~~~v 433 (694)
T 3dm0_A 384 MVTAIATPIDNA-----------DIIVSASR-----DKSIILWKLTKD--DKA------------YGVAQRRLTGHSHFV 433 (694)
T ss_dssp CEEEEECCTTCC-----------SEEEEEET-----TSEEEEEECCCS--TTC------------SCEEEEEEECCSSCE
T ss_pred eeEEEEecCCCC-----------CEEEEEeC-----CCcEEEEEccCC--Ccc------------cccccceecCCCCcE
Confidence 567777766321 13445544 377888865521 000 113344566899999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .+|++|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|++|++||+..
T Consensus 434 ~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 434 EDVVLSSDG-QFALSGSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTS
T ss_pred EEEEECCCC-CEEEEEeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCC
Confidence 999999999 68999999999999999873 33667889999999999999998 999999999999999865
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
... ........+|...|.+++|+|.+ ...+++++.||.|++||+++++....+.+|...|++++|+|++. +|++|
T Consensus 504 ~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg 579 (694)
T 3dm0_A 504 ECK---YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASG 579 (694)
T ss_dssp CEE---EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred Ccc---eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEE
Confidence 321 11112224688899999999954 36899999999999999999998888999999999999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC-----eeE
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP-----ELL 352 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~ 352 (406)
+.||.|++||+++... +..+. +...|.+++|+|++. +|+++ .++.|+|||++................ ...
T Consensus 580 ~~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKK-LYSLE-ANSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp ETTSBCEEEETTTTEE-EECCB-CSSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred eCCCeEEEEECCCCce-EEEec-CCCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhcccccccccccccccc
Confidence 9999999999998654 44444 456899999999985 45555 467799999987332111100000000 000
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.....+...+++++|+|+|+ +|++|+.||.|+||++..
T Consensus 656 ~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 00112233478999999999 699999999999999863
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=269.55 Aligned_cols=267 Identities=18% Similarity=0.279 Sum_probs=209.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|+++.+|++|+.||.|+|||+..... .......+|...|.+++|+|++..+|++++.|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------EEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 344579999999999999867899999999999999987322 11223347999999999999443399999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++||+... .+..+.....|...|.+++|+| ++.+|++++.||.|++||+ .++.+..+..|...|.+++|+|
T Consensus 141 ~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 141 GATTLRDFSGS----VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp TEEEEEETTSC----EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred CEEEEEECCCC----ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999852 2222233334558899999999 6889999999999999999 4677788888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+++.+|++++.|+.|++||+++.. ..+..+ .|...|.+++|+| ++. +|++++.|+.|++||++...........
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccc
Confidence 998789999999999999999743 223334 7999999999999 886 6999999999999999875432211100
Q ss_pred -----------------------------------cC--------CCCeeEEEecC--CCCCeeeEEeCCCCCcEEEEEe
Q 015484 345 -----------------------------------ED--------GPPELLFSHGG--HKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 345 -----------------------------------~~--------~~~~~~~~~~~--h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
.+ ....++..+.+ |...+..++|+|+++ +|++++
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s 371 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM 371 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec
Confidence 01 12334455554 456677789999999 688887
Q ss_pred CCCcEEEEeCCC
Q 015484 380 DDNTVQVWQMTD 391 (406)
Q Consensus 380 ~dg~i~iw~~~~ 391 (406)
|+.|+||++.+
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=274.83 Aligned_cols=307 Identities=12% Similarity=0.102 Sum_probs=222.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeec--CCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEE--
Q 015484 33 SHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTH--TSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEI-- 108 (406)
Q Consensus 33 ~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~--~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (406)
.+.+.+|.++++|.|+. +.++.|.. +..+.+|.|.++++....... ...+..
T Consensus 10 ~~~~g~PV~sv~fs~dg------------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~------------~~~~~~~~ 65 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND------------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE------------KEQFHILS 65 (365)
T ss_dssp EEECSSCEEEEEEEETT------------EEEEEEECCSSSSSCCEEEEEEEECTTSSSH------------HHHEEEEE
T ss_pred ecCCCCCEEEEEEeCCC------------cEEEEECCCccccCCCCEEEEEEEcCCCcce------------eeeeeeee
Confidence 45678999999999942 34555543 223568999999887441100 011222
Q ss_pred -EEEeecCCceeEEEEcCCCCcEEEEE-----------eCCCeEEEEeCCCccccccC-CCCCceeeeCCCCCeeEEEec
Q 015484 109 -AQKIRVDGEVNRARCMPQKPNLVGTK-----------TSSCEVYVFDCAKQAEKQQD-DCDPDLRLKGHDKEGYGLSWS 175 (406)
Q Consensus 109 -~~~~~h~~~v~~i~~~p~~~~~l~~~-----------~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~ 175 (406)
...-.|...|.++++.+ ..+++| +.|+.+++|++......... ..........+...+.+++|+
T Consensus 66 ~~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 66 EFALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp EEECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred EEEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 22335778888888765 345554 45778999998764321100 000011122345668899999
Q ss_pred CCCCCeEE--EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-
Q 015484 176 PFKEGYLV--SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ- 252 (406)
Q Consensus 176 ~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~- 252 (406)
|+|+ +|+ +++.|++|++||+.++.. +..+ .|...|.+++|+| ++.++++++.+ .+.+|+..+++.+.
T Consensus 143 pDg~-~la~as~~~d~~i~iwd~~~~~~------~~~~-~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 143 REGT-VAAIASSKVPAIMRIIDPSDLTE------KFEI-ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIAR 212 (365)
T ss_dssp TTSS-CEEEEESCSSCEEEEEETTTTEE------EEEE-ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred CCCC-EEEEEECCCCCEEEEeECCCCcE------EEEe-CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceee
Confidence 9998 765 455799999999988643 2333 3678899999999 78888888755 57777777776543
Q ss_pred -cccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 -RVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 -~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
....|...|.+++|+|++. ++++++.|+ .+++||+...... ...+..|...|++++|+|+++ +||+|+.|
T Consensus 213 ~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D 290 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASND 290 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETT
T ss_pred eecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCC
Confidence 3356788899999999998 888888776 5888888764421 345778999999999999997 79999999
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEE-ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFS-HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.|+|||+.+ .+++.. ..+|...|++++|+|+|+ +|+||+.|++|+||++..+.
T Consensus 291 ~~V~iwd~~~--------------~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 291 NSIALVKLKD--------------LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp SCEEEEETTT--------------TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTT
T ss_pred CEEEEEECCC--------------CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCC
Confidence 9999999986 355555 478999999999999999 79999999999999997654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=267.41 Aligned_cols=260 Identities=18% Similarity=0.196 Sum_probs=214.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
|.+.|++++|+|++ .+|++|+.||.|++|+... .....+.+|...|.+++|+|++. +|++++.||.|++
T Consensus 107 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i 175 (425)
T 1r5m_A 107 TTNQVTCLAWSHDG-NSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTIL 175 (425)
T ss_dssp -CBCEEEEEECTTS-SEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEE
T ss_pred CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEE
Confidence 67799999999998 6899999999999999332 34667888999999999999988 9999999999999
Q ss_pred EeCCCccCCcee--------------------------------------------------eeeeeeeccCccEEEEEe
Q 015484 194 WDVSALAQDKVI--------------------------------------------------DAMHVYEAHESVVEDVSW 223 (406)
Q Consensus 194 wd~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~i~~i~~ 223 (406)
||+.++.....+ .....+..|...|.+++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 999765321111 112344568889999999
Q ss_pred eCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC
Q 015484 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE 303 (406)
Q Consensus 224 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 303 (406)
+| ++.+|++++.||.|++||+++++.+..+..|...|.+++|+|++ ++++++.||.|++||+++... +..+..|..
T Consensus 256 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~ 331 (425)
T 1r5m_A 256 ND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL-LALSIVDGV 331 (425)
T ss_dssp ET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE-EEEEECTTC
T ss_pred CC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE-eEecccCCc
Confidence 99 67899999999999999999999888888899999999999988 799999999999999998654 778888999
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc------cCCCCeeEEEecCCCC--CeeeEEeCCCCCcEE
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA------EDGPPELLFSHGGHKA--KISDFSWNKNDPWVI 375 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~~l 375 (406)
.|.+++|+|+++ +|++++.||.|++||+............ ...+..++..+.+|.. .|.+++|+|+++ +|
T Consensus 332 ~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 409 (425)
T 1r5m_A 332 PIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KI 409 (425)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EE
T ss_pred cEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eE
Confidence 999999999997 6999999999999999863311100000 0001236777888876 999999999999 68
Q ss_pred EEEeCCCcEEEEeCC
Q 015484 376 SSVADDNTVQVWQMT 390 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~ 390 (406)
++++.||.|++|++.
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 899999999999986
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=288.06 Aligned_cols=254 Identities=19% Similarity=0.310 Sum_probs=211.3
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++..+|++|+.||+|+||++...... .......+.+|...|.+++|+|++. +|++|+.||
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~---~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg 452 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA---YGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDG 452 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---SCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---cccccceecCCCCcEEEEEECCCCC-EEEEEeCCC
Confidence 355799999999999988789999999999999999864221 1123457889999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc---cccccCCCeeEEEe
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RVKAHEKEVNYLSF 266 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~i~~ 266 (406)
+|++||+.++. ....+.+|...|.+++|+| ++.+|++++.|+.|++||+....... ...+|...|.+++|
T Consensus 453 ~v~vwd~~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 453 ELRLWDLAAGV------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp EEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred cEEEEECCCCc------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence 99999998763 2356678999999999999 67888999999999999987543322 22568889999999
Q ss_pred cCCCC-cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 267 NPYNE-WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 267 ~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
+|++. .+|++|+.|+.|++||+++... ...+.+|...|++++|+|+++ +|++++.||.|++||++.
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~----------- 592 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE----------- 592 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT-----------
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-----------
Confidence 99862 3899999999999999998654 778899999999999999997 699999999999999987
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+. +...|.+++|+|++. ++++++ |+.|+|||+.++.
T Consensus 593 ---~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 593 ---GKKLYSLE-ANSVIHALCFSPNRY-WLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp ---TEEEECCB-CSSCEEEEEECSSSS-EEEEEE-TTEEEEEETTTTE
T ss_pred ---CceEEEec-CCCcEEEEEEcCCCc-EEEEEc-CCCEEEEECCCCC
Confidence 23444444 346799999999987 566654 6779999998874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=282.56 Aligned_cols=245 Identities=24% Similarity=0.448 Sum_probs=214.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|.+++|+|++ .+|++++.||.|++|+.... ....+.+|...|.+++|+|++. +|++|+.|
T Consensus 297 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~---------~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d 365 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ---------HLQTLTGHSSSVWGVAFSPDGQ-TIASASDD 365 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC---------EEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCC---------eeEEEeCCCCCEEEEEECCCCC-EEEEEeCC
Confidence 3445799999999999998 68999999999999998652 2456788999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|+... ..+..+..|...|.+++|+| ++++|++++.|+.|++||. +++.+..+..|...|++++|+|
T Consensus 366 g~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~ 436 (577)
T 2ymu_A 366 KTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 436 (577)
T ss_dssp SEEEEEETTC-------CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT
T ss_pred CEEEEEcCCC-------CEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC
Confidence 9999999643 12456678999999999999 6788999999999999995 5677778888999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. +|++++.|+.|++||... ..+..+.+|...|.+++|+|+++ +|++++.|+.|++||...
T Consensus 437 d~~-~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~~-------------- 498 (577)
T 2ymu_A 437 DDQ-TIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-------------- 498 (577)
T ss_dssp TSS-EEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS--------------
T ss_pred CCC-EEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCCC--------------
Confidence 998 999999999999999753 34778899999999999999997 699999999999999653
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++..+.+|...|++++|+|+++ +|++++.||.|++||.....
T Consensus 499 -~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~~~ 541 (577)
T 2ymu_A 499 -QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL 541 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTSCE
T ss_pred -CEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCCCE
Confidence 56677889999999999999999 58899999999999976543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=285.67 Aligned_cols=264 Identities=12% Similarity=0.133 Sum_probs=202.9
Q ss_pred EEeecCCceeEEEEcCCC-C-------cEEEE-------------------EeCCCeEEEEeCCCccccccCCCCCceee
Q 015484 110 QKIRVDGEVNRARCMPQK-P-------NLVGT-------------------KTSSCEVYVFDCAKQAEKQQDDCDPDLRL 162 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~-~-------~~l~~-------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 162 (406)
..+.+.+.|.+|+|+|++ . .+||+ ++.|++|+||++...... ......+
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~----~~~~~~l 203 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH----CVKVQTI 203 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC----EEEEEEE
T ss_pred EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC----ceEEEEE
Confidence 345678999999999975 1 45665 457889999998763210 0012346
Q ss_pred eCCCCCeeEEEecCCC-----CCeEEEecCCCeEEEEeCCCccCCc-----eeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 163 KGHDKEGYGLSWSPFK-----EGYLVSGSHDNKICLWDVSALAQDK-----VIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 163 ~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
.+|.+.|.+++|+|++ ..+||+|+.||+|++||+..+.... ...+...+.+|...|.+++|+| +..|+
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~la 281 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVV 281 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEE
Confidence 6788999999999962 2399999999999999998764321 1122345678999999999997 35899
Q ss_pred EEecCCcEEEEECCCCcc-cccccccCCCeeEE--EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC--CeEE
Q 015484 233 SAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYL--SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE--EVFQ 307 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~ 307 (406)
+|+.||+|++||++++.. ...+.+|...|+++ +|+|++..+|++|+.|++|+|||+++... +..+.+|.. .|.+
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCC
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccc
Confidence 999999999999997643 45578899999999 57887733999999999999999997654 445555543 5889
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
++|+|+++ .+++++.|++|++||++. ...+..+.+|...|++++|+|+++ +|++|+.||.|++|
T Consensus 361 v~fsp~~~-~l~s~~~d~tv~lwd~~~--------------~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 361 VVYCPQIY-SYIYSDGASSLRAVPSRA--------------AFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIIT 424 (524)
T ss_dssp EEEETTTT-EEEEECSSSEEEEEETTC--------------TTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECC
T ss_pred eEeCCCcC-eEEEeCCCCcEEEEECcc--------------cccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEE
Confidence 99999987 589999999999999987 233345667999999999999999 58999999999999
Q ss_pred eCCCcccCC
Q 015484 388 QMTDSIYRD 396 (406)
Q Consensus 388 ~~~~~~~~~ 396 (406)
++..+.+..
T Consensus 425 d~~~~~~~~ 433 (524)
T 2j04_B 425 NAARRLLHG 433 (524)
T ss_dssp BSCSSTTTC
T ss_pred echHhhccc
Confidence 998775543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=265.60 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=231.9
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE-EeecCC
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ-KIRVDG 116 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~ 116 (406)
-|..++.|.|+. ..++.|+. ++.|.++++.-. +++... ..+|.+
T Consensus 9 ~~i~~~~~s~~~------------~~l~~~~~-----d~~v~i~~~~~~------------------~~~~~~~~~~h~~ 53 (372)
T 1k8k_C 9 EPISCHAWNKDR------------TQIAICPN-----NHEVHIYEKSGN------------------KWVQVHELKEHNG 53 (372)
T ss_dssp SCCCEEEECTTS------------SEEEEECS-----SSEEEEEEEETT------------------EEEEEEEEECCSS
T ss_pred CCeEEEEECCCC------------CEEEEEeC-----CCEEEEEeCCCC------------------cEEeeeeecCCCC
Confidence 377899998742 14555543 478998877621 122333 346999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+|++ .+|++++.||.|++|++.... ......+..|...|.+++|+|++. +|++|+.||.|++||+
T Consensus 54 ~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 54 QVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYF 125 (372)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEE
T ss_pred cccEEEEeCCC-CEEEEEcCCCeEEEEECCCCe------eeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEe
Confidence 99999999988 689999999999999997632 122344567899999999999988 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC------------------CCcccccccccC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR------------------TNQTQQRVKAHE 258 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~ 258 (406)
+........ ......|...|.+++|+| ++.+|++++.||.|++||++ .++.+..+..|.
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 126 EQENDWWVC--KHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp ETTTTEEEE--EEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred cCCCcceee--eeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 876431111 122356788999999999 68899999999999999964 556677777899
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|.+++|+|++. +|++++.||.|++||+++.+. +..+..|...|.+++|+|++. +|+++ .|+.|++|++......
T Consensus 203 ~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 203 GWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp SCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTE
T ss_pred CeEEEEEECCCCC-EEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCce
Confidence 9999999999998 999999999999999998654 788889999999999999986 56666 8999999999761110
Q ss_pred ccc---ccc-----------------cCCCCeeE------EEe-cCCCCCeeeEEeC-CCC---CcEEEEEeCCCcEEEE
Q 015484 339 QLE---LDA-----------------EDGPPELL------FSH-GGHKAKISDFSWN-KND---PWVISSVADDNTVQVW 387 (406)
Q Consensus 339 ~~~---~~~-----------------~~~~~~~~------~~~-~~h~~~v~~~~~s-~~~---~~~l~s~~~dg~i~iw 387 (406)
... ... .+...... ..+ .+|...|++++|+ ++| . +|++++.||.|++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIW 357 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEEE
Confidence 000 000 00001111 222 4899999999977 555 6 79999999999999
Q ss_pred eCCCc
Q 015484 388 QMTDS 392 (406)
Q Consensus 388 ~~~~~ 392 (406)
++.++
T Consensus 358 ~~~~~ 362 (372)
T 1k8k_C 358 DVRSL 362 (372)
T ss_dssp EHHHH
T ss_pred EecCh
Confidence 98764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=250.76 Aligned_cols=253 Identities=21% Similarity=0.253 Sum_probs=211.6
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
......|.+.|.+++|+|++ .+|++++.||.|++|++.... ...+...+.+|...|.+++| ++. +|++++.
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~--~~~-~l~~~~~ 122 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSF--QDG-VVISGSW 122 (313)
T ss_dssp EEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEE--ETT-EEEEEET
T ss_pred EEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC-----CCCcccchhhcccCEEEEEe--cCC-EEEEEeC
Confidence 34456789999999999998 689999999999999998742 23456778899999999999 355 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-cCCCeeEEEe
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-HEKEVNYLSF 266 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~i~~ 266 (406)
||.|++||.. .....+..|...+.+++|+|.++.++++++.||.|++||. .+....+.. +...+.+++|
T Consensus 123 d~~i~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 123 DKTAKVWKEG--------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp TSEEEEEETT--------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEE
T ss_pred CCCEEEEcCC--------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEE
Confidence 9999999921 1235567789999999999877899999999999999993 444555555 8899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++. +++++.||.|++||+++.+. +..+..|...|.+++|+|++ . |++++.||.|++||+..
T Consensus 193 ~~~~~--~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~------------ 255 (313)
T 3odt_A 193 VDDGH--FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKEN------------ 255 (313)
T ss_dssp EETTE--EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTT------------
T ss_pred cCCCe--EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCC------------
Confidence 99886 88999999999999998654 78888999999999999999 4 88999999999999987
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCCccc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDDF 400 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 400 (406)
...+..+..|...|.+++|+|+++ +++++.||.|++|++.++.+..+...
T Consensus 256 --~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 256 --GSLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp --CCEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEEESCGGGCCC----
T ss_pred --CceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCCCceeehhhh
Confidence 356667778888999999999998 45688999999999999877655443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=267.16 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=211.1
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.++|++++|+|++ .+|++++.||.|++|++.... ......+.+|...|.+++|+|++. +|++++.||.|+
T Consensus 6 ~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~ 77 (372)
T 1k8k_C 6 FLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAY 77 (372)
T ss_dssp SCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred ccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEE
Confidence 389999999999998 689999999999999998732 124677889999999999999888 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---ccc-ccccCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQR-VKAHEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~-~~~~~~~v~~i~~~~ 268 (406)
+||+.++.. .....+..|...|.+++|+| ++.+|++++.||.|++||++.+.. ... ...|...|.+++|+|
T Consensus 78 vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 78 VWTLKGRTW----KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEEEETTEE----EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred EEECCCCee----eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 999977532 12233456889999999999 678999999999999999998763 222 256789999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC-----------------CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 269 YNEWVLATASSDTTVALFDMRK-----------------MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~-----------------~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
++. +|++++.||.|++||++. ...++..+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 153 ~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEE
T ss_pred CCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEE
Confidence 998 999999999999999752 2344677888999999999999997 699999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
++. ...+..+..|...|.+++|+|++. +++++ .|+.|++|++.+
T Consensus 231 ~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 231 ADK--------------KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGG--------------TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred CCC--------------CceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 986 355667778999999999999998 57666 899999999988
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=267.95 Aligned_cols=262 Identities=15% Similarity=0.271 Sum_probs=215.9
Q ss_pred eecCCceeEEEEcCC---CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-----CCCCCeeEEEecCC----CC
Q 015484 112 IRVDGEVNRARCMPQ---KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-----GHDKEGYGLSWSPF----KE 179 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~----~~ 179 (406)
.+|.+.|++++|+|+ +...+++++.++.|+||++..... ...+. .|...|++++|+|+ +.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--------IRLLQSYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--------EEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--------EEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence 369999999999984 445666677778999999986432 22232 36788999999998 44
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cc
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KA 256 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~ 256 (406)
+|++|+.||.|++||+.+++ .+..+..|...|.+++|+|.++.+|++++.||.|++||+++++.+..+ ..
T Consensus 87 -~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 87 -LLAVAGSRGIIRIINPITMQ------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp -EEEEEETTCEEEEECTTTCC------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred -EEEEecCCCEEEEEEchhce------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 89999999999999998753 235567899999999999977899999999999999999999887776 67
Q ss_pred cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC---------------------------CcEEecCCCCCeEEEE
Q 015484 257 HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV---------------------------PLHILSSHTEEVFQVE 309 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~h~~~v~~i~ 309 (406)
|...|.+++|+|++. +|++++.||.|++||+++... .......|...|.+++
T Consensus 160 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 999999999999998 999999999999999986432 1223334999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC--CCcEEEEEeCCCcEEEE
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN--DPWVISSVADDNTVQVW 387 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~~l~s~~~dg~i~iw 387 (406)
|+ ++ +|++++.||.|++||+...................+..+.+|...|.+++|+|+ ++ +|++++.||.|++|
T Consensus 239 ~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vw 314 (366)
T 3k26_A 239 WL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVW 314 (366)
T ss_dssp EE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEE
T ss_pred Ec--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEE
Confidence 99 44 799999999999999988655444443334444667888899999999999999 88 79999999999999
Q ss_pred eCCCcc
Q 015484 388 QMTDSI 393 (406)
Q Consensus 388 ~~~~~~ 393 (406)
++.++.
T Consensus 315 d~~~~~ 320 (366)
T 3k26_A 315 DLEVED 320 (366)
T ss_dssp ECCSSS
T ss_pred ECCCCC
Confidence 999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=277.59 Aligned_cols=252 Identities=14% Similarity=0.195 Sum_probs=198.8
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.|.++|++++|+|++ .+||+|+.||.|+||++.... ......+.+|...|.+++|+|++. +|++|+.||+|+
T Consensus 9 ~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~ 80 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAY 80 (377)
T ss_dssp ECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEE
T ss_pred cCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEE
Confidence 367899999999998 689999999999999998731 133566789999999999999988 999999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc---cccccc-cCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT---QQRVKA-HEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~v~~i~~~~ 268 (406)
+||+.++.. ......+..|...|.+++|+| ++.+|++++.|+.|++||+++++. ...+.. |...|++++|+|
T Consensus 81 vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 81 VYEKRPDGT---WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp EC------C---CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred EEEcCCCCc---eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 999988651 223355667999999999999 678889999999999999998873 566666 899999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCC-----------------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 269 YNEWVLATASSDTTVALFDMRKMT-----------------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
++. +|++++.|+.|++||++... .++..+ .|...|.+++|+|+++ +|++++.||.|++||
T Consensus 157 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 157 NNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAY 233 (377)
T ss_dssp TSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CE
T ss_pred CCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEE
Confidence 998 99999999999999986321 123444 8999999999999997 599999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+..... +...+..+.+|...|.+++|+|+++ +|++++.|+. .+|+...
T Consensus 234 ~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~-~~~~~~~ 281 (377)
T 3dwl_C 234 PSAPEQ----------PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSP-ILLQGNE 281 (377)
T ss_dssp ECSTTS----------CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSE-EEECCCC
T ss_pred CCCCCC----------cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcE-EEEEeCC
Confidence 987332 1122455678999999999999998 6888876554 5777663
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=270.65 Aligned_cols=301 Identities=18% Similarity=0.194 Sum_probs=215.2
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
|..++.|.|+. ..++.|+. ++.|.++++.-. ..+.. ...+|.+.
T Consensus 13 ~v~~~~~s~~g------------~~l~~~~~-----d~~i~iw~~~~~------------------~~~~~~~~~~h~~~ 57 (377)
T 3dwl_C 13 PSYEHAFNSQR------------TEFVTTTA-----TNQVELYEQDGN------------------GWKHARTFSDHDKI 57 (377)
T ss_dssp CCSCCEECSSS------------SEEECCCS-----SSCBCEEEEETT------------------EEEECCCBCCCSSC
T ss_pred cEEEEEECCCC------------CEEEEecC-----CCEEEEEEccCC------------------ceEEEEEEecCCce
Confidence 67788887742 14444433 467888877621 01111 22369999
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
|++++|+|++ .+|++++.||.|+|||+.... ...+...+.+|...|.+++|+|++. +|++|+.|+.|++||++
T Consensus 58 v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 58 VTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG-----TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFE 130 (377)
T ss_dssp EEEEEECTTT-CCEEEEETTSSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC-----ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEEC
Confidence 9999999998 689999999999999998742 1345677888999999999999888 99999999999999998
Q ss_pred CccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC------------------CcccccccccC
Q 015484 198 ALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT------------------NQTQQRVKAHE 258 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~ 258 (406)
.+... .....+.. |...|.+++|+| ++.+|++++.||.|++||++. ++.+..+ .|.
T Consensus 131 ~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 131 QENDW---WVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp ----C---CCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred Ccccc---eeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 76421 12344555 899999999999 688999999999999999853 3344555 789
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..|++++|+|++. +|++++.||.|++||+++...+ +..+..|...|.+++|+|+++ +|++++.++.+ +|+....
T Consensus 206 ~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 206 GWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp SSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC-
T ss_pred ceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCC
Confidence 9999999999999 8999999999999999987653 567788999999999999996 68787766555 7776532
Q ss_pred Ccc-cccccccCC--C-------------C---------eeEE-------------EecCCCCCeeeEEeCCCCCc---E
Q 015484 336 GDE-QLELDAEDG--P-------------P---------ELLF-------------SHGGHKAKISDFSWNKNDPW---V 374 (406)
Q Consensus 336 ~~~-~~~~~~~~~--~-------------~---------~~~~-------------~~~~h~~~v~~~~~s~~~~~---~ 374 (406)
+.. ......... . . .... ....|...|+++++.+.... .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~ 362 (377)
T 3dwl_C 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA 362 (377)
T ss_dssp --CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEE
T ss_pred ceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEE
Confidence 210 000000000 0 0 0000 11249999999998776543 5
Q ss_pred EEEEeCCCcEEEEeC
Q 015484 375 ISSVADDNTVQVWQM 389 (406)
Q Consensus 375 l~s~~~dg~i~iw~~ 389 (406)
|+|+|.||.|+|||+
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 899999999999986
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=263.38 Aligned_cols=247 Identities=20% Similarity=0.379 Sum_probs=208.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.-+|...|++|+|+|++ .+||+|+.||+|+|||+.+. +....+.+|...+.+++|+ +. +|++|+.|+.
T Consensus 143 ~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~--------~~~~~~~~h~~~v~~~s~~--~~-~l~sgs~d~~ 210 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGH 210 (420)
T ss_dssp CCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEE--TT-EEEEEETTSE
T ss_pred ecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCC--------cEEEEEeCCCCceEEEeeC--CC-EEEEEeCCCc
Confidence 34688899999999999 68999999999999999874 3467788999999999886 45 8999999999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc----cccccccCCCeeEEEe
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEKEVNYLSF 266 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~i~~ 266 (406)
+++||...... .+..+.+|...+..+.|+| .+.++++++.|+.+++||...++. +.....|...|.+++|
T Consensus 211 i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 284 (420)
T 4gga_A 211 IHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284 (420)
T ss_dssp EEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred eeEeeecccce-----eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeee
Confidence 99999876532 2456778999999999999 788999999999999999987754 3445678899999999
Q ss_pred cCCCCcEEEEE--eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATA--SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS-ADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|.+..+++++ +.|+.|++||++++.. +..+.. ...+.++.|+|+++.+++++ +.|+.|+|||+.+
T Consensus 285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--------- 353 (420)
T 4gga_A 285 CPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------- 353 (420)
T ss_dssp CTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---------
T ss_pred CCCcccEEEEEeecCCCEEEEEeCCcccc-ceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCC---------
Confidence 99988788765 4799999999998664 555544 46799999999998644433 3799999999986
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..++..+.+|...|++++|+|+|+ +|+||+.|++|+|||+.+.
T Consensus 354 -----~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 354 -----MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 396 (420)
T ss_dssp -----CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 467788899999999999999999 5899999999999999764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=266.51 Aligned_cols=255 Identities=12% Similarity=0.161 Sum_probs=211.2
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----C---CCeEEE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----K---EGYLVS 184 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~---~~~l~s 184 (406)
.+|.+.|++++|+| .+|++|+.||.|+||++....... .......+.+|...|.+++|+|+ + . +|++
T Consensus 13 ~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s 86 (397)
T 1sq9_A 13 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVAT 86 (397)
T ss_dssp SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEE
T ss_pred hhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCcccc-EEEE
Confidence 36999999999998 479999999999999998743110 12246778899999999999998 7 7 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeecc-----CccEEEEEee----CCCCCE-EEEEecCCcEEEEECCC------C
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAH-----ESVVEDVSWH----LKNENL-FGSAGDDCQLMIWDLRT------N 248 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~----p~~~~~-l~~~~~dg~i~i~d~~~------~ 248 (406)
++.||.|++||+.++..... .....+..| ...|.+++|+ | ++.+ |++++.||.|++||+++ +
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKK-VIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EETTSCEEEEEEEECTTTCC-EEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EcCCCCEEEEEccCCccccc-ccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 99999999999987653111 113455666 5899999999 8 5777 99999999999999998 6
Q ss_pred cccc-----cc-------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC---C---CCCeEEEEE
Q 015484 249 QTQQ-----RV-------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS---H---TEEVFQVEW 310 (406)
Q Consensus 249 ~~~~-----~~-------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---h---~~~v~~i~~ 310 (406)
+.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++.. ++..+.. | ...|.+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEE
Confidence 6666 66 3478899999999988 89999999999999999855 4777888 8 999999999
Q ss_pred cCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecC-------------CCCCeeeEEeCCCCCcE
Q 015484 311 DPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-------------HKAKISDFSWNKNDPWV 374 (406)
Q Consensus 311 ~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~~ 374 (406)
+|++. +|++++.| |.|++||++. ...+..+.+ |...|.+++|+|+++ +
T Consensus 242 ~~~~~-~l~~~~~d~~~g~i~i~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 305 (397)
T 1sq9_A 242 SPQGS-LLAIAHDSNSFGCITLYETEF--------------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-T 305 (397)
T ss_dssp CSSTT-EEEEEEEETTEEEEEEEETTT--------------CCEEEEECBC--------CCBSBSSCEEEEEECSSSS-E
T ss_pred CCCCC-EEEEEecCCCCceEEEEECCC--------------CcccceeccCcccccccccccccCCcEEEEEECCCCC-E
Confidence 99987 69999999 9999999986 244555566 899999999999999 6
Q ss_pred EEEEeCCCcEEEEeCCCcc
Q 015484 375 ISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~~ 393 (406)
|++++.||.|++|++.++.
T Consensus 306 l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 306 LCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEEETTSEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEEcCCCc
Confidence 8999999999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=262.81 Aligned_cols=263 Identities=13% Similarity=0.243 Sum_probs=209.5
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--- 177 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--- 177 (406)
+.+......+|.+.|++++|+|+++.++++|+. ||.|+||++..... . .....+|...|.+++|+|+
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------~-~~~~~~~~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------K-LLREIEKAKPIKCGTFGATSLQ 79 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE------E-EEEEEEESSCEEEEECTTCCTT
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc------c-ceeeecccCcEEEEEEcCCCCC
Confidence 344445556799999999999999778888877 99999999987422 1 1223378999999999998
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe------eCCCCCEEEEEecCCcEEEEECCCCc-c
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW------HLKNENLFGSAGDDCQLMIWDLRTNQ-T 250 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p~~~~~l~~~~~dg~i~i~d~~~~~-~ 250 (406)
+. +|++|+.||.|++||+.++.. ....+..|...|.+++| +| ++.+|++++.||.|++||+++++ .
T Consensus 80 ~~-~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 80 QR-YLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TC-CEEEEETTSCEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred Cc-eEEEecCCCeEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc
Confidence 45 999999999999999988651 23556789999999965 55 67899999999999999999887 5
Q ss_pred cccccccCC----CeeEEE----ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC---CCCCEEE
Q 015484 251 QQRVKAHEK----EVNYLS----FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP---NHETVLA 319 (406)
Q Consensus 251 ~~~~~~~~~----~v~~i~----~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p---~~~~~l~ 319 (406)
+..+..+.. .+.+++ |+|++. +|++++.||.|++||+++... .....|...|.+++|+| ++. +|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~-~l~ 228 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDISMN-KLV 228 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSSSCC-EEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCCCCC-EEE
Confidence 666654443 788998 788888 999999999999999998653 44567889999999999 776 699
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++.||.|++||++...... ........+|...|.+++|+|+++.++++++.||.|++|++..+.
T Consensus 229 ~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQHPTK---------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEESTTEEEEEEEEEEETTT---------EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EECCCCeEEEEeCcCCCccc---------ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999999998632110 011224458999999999999998679999999999999998653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=271.96 Aligned_cols=264 Identities=17% Similarity=0.292 Sum_probs=202.7
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCC------------CCeeEEEecC
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHD------------KEGYGLSWSP 176 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~------------~~v~~l~~~~ 176 (406)
+.|.+.|++++|+|++ .+||+|+.||.|+||++....... .........+.+|. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 3567999999999998 689999999999999998743110 01122366788998 8899999999
Q ss_pred CCC-CeEEEecCCCeEEEEeCCCccCCce---------------------e------------eeeee-eeccCccEEEE
Q 015484 177 FKE-GYLVSGSHDNKICLWDVSALAQDKV---------------------I------------DAMHV-YEAHESVVEDV 221 (406)
Q Consensus 177 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~---------------------~------------~~~~~-~~~~~~~i~~i 221 (406)
++. ..|++++.||+|++||+........ + .+... ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 872 3899999999999999876332100 0 01112 35789999999
Q ss_pred EeeCCCCCEEEEEecCCcEEEEECCC-Ccccc-------cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 222 SWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQ-------RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 222 ~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+|+| ++.+|++| .||.|++||++. ++... .+..|...|++++|+|++..+|++|+.||.|++||+++...
T Consensus 184 ~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999 68888888 799999999984 33333 35688999999999999834999999999999999998653
Q ss_pred ---CcEEecCCCC------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 294 ---PLHILSSHTE------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 294 ---~~~~~~~h~~------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.+..+..|.. .|.+++|+|+++ +|++++. +.|++||++.... ++..+.+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~-------------~~~~~~~~ 326 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENR-------------PVETYQVH 326 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSS-------------CSCCEESC
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCcc-------------ccceeecc
Confidence 2577888876 899999999997 6888888 9999999986222 22233445
Q ss_pred CCC---------------eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 359 KAK---------------ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 359 ~~~---------------v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
... +..++|+|+++ .|++++.||.|++||+.++..
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcc
Confidence 321 33499999999 589999999999999988753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=266.30 Aligned_cols=258 Identities=17% Similarity=0.301 Sum_probs=210.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CCCCeEEEecCCCeEEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~iw 194 (406)
.....++++|+...++++++.+|.|+||++...... ......+.+|...|++++|+| ++. +|++|+.||+|++|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVW 109 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEE
Confidence 455668899987666677899999999999764221 133556789999999999999 666 99999999999999
Q ss_pred eCCCccCCcee-eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCC
Q 015484 195 DVSALAQDKVI-DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 195 d~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~ 271 (406)
|+.++...... .++..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 99886432111 3446677899999999999965689999999999999999999988888 78999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEe-cCCCCC-eEEEEEcCCCCCEEEEE---eCCCcEEEEeCCCCCcccccccccC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHIL-SSHTEE-VFQVEWDPNHETVLASS---ADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~-v~~i~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+|++++.||.|++||+++... +..+ ..|.+. +.++.|+|++. +|++| +.|+.|++||++.....
T Consensus 190 -~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~-------- 258 (402)
T 2aq5_A 190 -LICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEP-------- 258 (402)
T ss_dssp -CEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSC--------
T ss_pred -EEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCC--------
Confidence 899999999999999998664 6666 678776 89999999986 68888 78999999999873321
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.......|...|.+++|+|++++++++++.||.|++|++.++.
T Consensus 259 ----~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 259 ----LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp ----SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred ----ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 1122234677899999999999655677789999999998875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=260.70 Aligned_cols=258 Identities=16% Similarity=0.256 Sum_probs=209.9
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC----CCccccccCCCCCceeee----------CCCCCeeE
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC----AKQAEKQQDDCDPDLRLK----------GHDKEGYG 171 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~----------~h~~~v~~ 171 (406)
.+......|.+.|++++|+|+++.+||+|+.||.|++|++ .+..... .......+. +|...|++
T Consensus 36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW--KLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE--EEEEEEEEECCCCCC------CBCEEE
T ss_pred hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc--cccccccccccccccccccCCCCceEE
Confidence 4555667788999999999999548999999999999999 6533100 000122222 36889999
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ 251 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (406)
++|+|++. +|++|+.||.|++||... . .+..+..|...|.+++|+| ++.+|++++.||.|++||+++++.+
T Consensus 114 ~~~s~~~~-~l~~~~~dg~i~i~~~~~-~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 114 LAWSHDGN-SIVTGVENGELRLWNKTG-A------LLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTS-C------EEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCC-C------eeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEE
Confidence 99999988 999999999999999332 1 2355677899999999999 6788889999999999999765432
Q ss_pred c--------------------------------------------------------cccccCCCeeEEEecCCCCcEEE
Q 015484 252 Q--------------------------------------------------------RVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 252 ~--------------------------------------------------------~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
. .+..|...|.+++|+|++. +|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEE
Confidence 2 2335678899999999998 999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.||.|++||++.... +..+..|...|.+++|+|++ ++++++.||.|++||+.. ...+..+
T Consensus 264 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~--------------~~~~~~~ 326 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ--------------NTLLALS 326 (425)
T ss_dssp EEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT--------------TEEEEEE
T ss_pred EEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC--------------CcEeEec
Confidence 999999999999998654 78888899999999999998 699999999999999976 4666777
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..|...|.+++|+|+++ +|++++.||.|++|++.++.
T Consensus 327 ~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 327 IVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred ccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence 78999999999999999 78999999999999998664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=286.35 Aligned_cols=250 Identities=20% Similarity=0.321 Sum_probs=217.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|++++|+|++ .+||+|+.+|.|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.||
T Consensus 8 ~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 77 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDF 77 (814)
T ss_dssp EEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGT-EEEEEETTS
T ss_pred eeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCC
Confidence 345799999999999999 68999999999999999873 33677889999999999999998 999999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~ 268 (406)
.|++||+.++.. +..+..|...|.+++|+| ++.++++++.||.|++||++++ .....+..|...|.+++|+|
T Consensus 78 ~i~vw~~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 78 RIRVFNYNTGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEEEETTTCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred eEEEEECCCCcE------EEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 999999987642 355677999999999999 6788999999999999999987 55667788999999999999
Q ss_pred -CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 269 -YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 269 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++. .|++++.||.|++||++...........+...+..++|+| +++ +|++++.||.|++||+..
T Consensus 151 ~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~----------- 217 (814)
T 3mkq_A 151 KDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT----------- 217 (814)
T ss_dssp TEEE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTT-----------
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCC-----------
Confidence 565 9999999999999999886664444444558999999999 776 699999999999999976
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++|+|+++ ++++++.||.|++|++.++.
T Consensus 218 ---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 218 ---KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp ---TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCS
T ss_pred ---CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 356677788999999999999999 79999999999999998764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=253.17 Aligned_cols=215 Identities=23% Similarity=0.377 Sum_probs=189.1
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
..++.+|.+.|.+++|+|++..+|++|+.|++|++|++..... ..-.++..+.+|...|.+++|+| ++.+|++++.|+
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~ 87 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDK 87 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-cccccceEEeCCcccEEEEEECC-CCCEEEEEeCCC
Confidence 5578899999999999997755999999999999999875432 12234567889999999999999 789999999999
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC---
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE--- 315 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~--- 315 (406)
.|++||+++++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||++. ..+..+.+|...|.++.|+|...
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCC
Confidence 999999999999999999999999999999998 999999999999999974 34778889999999999999642
Q ss_pred --CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 --TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+|++++.|+.|++||++. ......+.+|...|.+++|+|+++ +|++++.||.|+|||+.++.
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~--------------~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQ--------------FQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTT--------------TEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE
T ss_pred CccEEEEEeCCCEEEEEECCc--------------chhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence 3699999999999999986 456677789999999999999999 79999999999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=290.06 Aligned_cols=258 Identities=21% Similarity=0.303 Sum_probs=213.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ .+|++|+.||.|+||++... .......+.+|...|++++|+++ +. +|++|+.|
T Consensus 5 l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~D 76 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYD 76 (753)
T ss_dssp ---CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETT
T ss_pred cccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCC-EEEEEeCC
Confidence 45799999999999998 57999999999999999752 23346778899999999999987 66 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCCcEEEEECCCCcc--cccccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~i~ 265 (406)
|.|++||+.++. ......+..|...|.+++|+|.. +.++++|+.||.|++||++++.. ...+..|...|.+++
T Consensus 77 g~I~vwd~~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 77 GKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp SCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred CeEEEEECCCCc----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 999999998753 22345667799999999999942 88999999999999999998743 344577899999999
Q ss_pred ecCC-------------CCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCC---CCCEEEEEeCCCc
Q 015484 266 FNPY-------------NEWVLATASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPN---HETVLASSADDRR 326 (406)
Q Consensus 266 ~~~~-------------~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~---~~~~l~s~~~dg~ 326 (406)
|+|. +. ++++|+.||.|++||++.... +...+.+|...|++++|+|+ +. +|++++.||.
T Consensus 153 ~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~ 230 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRT 230 (753)
T ss_dssp ECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSC
T ss_pred ecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCE
Confidence 9994 66 899999999999999987642 35667889999999999999 65 7999999999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
|++||+........ .......+|...|++++|+|+++ ++++++.||.|++|++..+
T Consensus 231 I~iwd~~~~~~~~~---------~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 231 CIIWTQDNEQGPWK---------KTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSSSCCB---------CCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSS
T ss_pred EEEecCCCCCCcce---------eEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCC
Confidence 99999987432111 12222345888999999999999 5889999999999999853
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=267.25 Aligned_cols=244 Identities=16% Similarity=0.166 Sum_probs=199.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+....|+|++ .+||+|+.||.|++||+... .....+.+|...|.+++|+|++. +|++|+.||.|++||
T Consensus 98 ~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 98 DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFN--------LQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWS 167 (420)
T ss_dssp CEEEEEEECSSS-CEEEEEETTSCEEEECTTSC--------EEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred CceEEEEEecCC-CEEEEEECCCCEEEEeCCCc--------ceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence 344455678888 68999999999999999863 22455678999999999999988 999999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc---cC--------------
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HE-------------- 258 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-------------- 258 (406)
+.+++. +..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.. +.
T Consensus 168 ~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 168 VKDGSN------PRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR 240 (420)
T ss_dssp TTTCCC------CEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred CCCCcC------ceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence 988653 355678999999999999 688999999999999999999888776643 33
Q ss_pred -------CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 259 -------KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 259 -------~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
..+.+++|+|++. +|++|+.||.|++||+++..........|...|.+++|+|+++.+|++++.||.|++||
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred eeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 4455556678888 89999999999999999877645555668899999999999976799999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.... ++..+.+ |...|..+.|. ++. +|++++.|+.|++|++.+.
T Consensus 320 ~~~~~~-------------~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 320 LRSPEC-------------PVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp TTCTTS-------------CSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCT
T ss_pred cCCCcC-------------chhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCC
Confidence 987322 1222333 66778888665 666 7999999999999998874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=271.11 Aligned_cols=272 Identities=12% Similarity=0.195 Sum_probs=203.1
Q ss_pred eecCCceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 112 IRVDGEVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 112 ~~h~~~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+|.+.|++++|+| ++ .+||+|+.||+|+|||+....... ...+...+ +|...|.+++|+|++. +|++|+.||+
T Consensus 60 ~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~ 134 (437)
T 3gre_A 60 ENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKDGQ 134 (437)
T ss_dssp TTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred cCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCCCE
Confidence 46889999999999 77 689999999999999987622110 12223333 5999999999999888 9999999999
Q ss_pred EEEEeCC---CccCCcee--eeeeeee--c--cCccEEEEE--eeCCCCCEEEEEecCCcEEEEECCCCcccccccc--c
Q 015484 191 ICLWDVS---ALAQDKVI--DAMHVYE--A--HESVVEDVS--WHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA--H 257 (406)
Q Consensus 191 i~iwd~~---~~~~~~~~--~~~~~~~--~--~~~~i~~i~--~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~ 257 (406)
|++||+. .+...... ..+..+. . +...+.++. +++ ++.++++++.||.|++||+++++.+..+.. |
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 9999996 32211111 0111111 1 445666666 445 678999999999999999999999888877 8
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcC----CCCCEEEEEeCCCcEEEEeC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDP----NHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p----~~~~~l~s~~~dg~i~iwd~ 332 (406)
...|++++|+|++. +|++|+.||.|++||++.... +..+. .|...|.+++|+| ++. +|++++.||.|++||+
T Consensus 214 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 214 HGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNF 290 (437)
T ss_dssp GCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEET
T ss_pred CCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEc
Confidence 89999999999988 999999999999999998543 66664 7888999997765 454 7999999999999999
Q ss_pred CCCCcccccccccCCCCeeEE----------EecC--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 333 NRIGDEQLELDAEDGPPELLF----------SHGG--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~----------~~~~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..............+....+ .+.+ |...|++++|+ +++ +|++++.|+.|++||+.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGG
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCccc
Confidence 874322211111100000000 1223 77889999999 666 799999999999999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=264.29 Aligned_cols=260 Identities=18% Similarity=0.297 Sum_probs=210.9
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|.+.|++++|+|.+..+|++|+.||.|+||++....... ....+...+.+|...|.+++|+|++..+|++|+.||.|
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i 156 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence 47999999999999433799999999999999998742211 01155788999999999999999985599999999999
Q ss_pred EEEeCCCccCCceeeeeeee--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCC-eeEEEec
Q 015484 192 CLWDVSALAQDKVIDAMHVY--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKE-VNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~i~~~ 267 (406)
++||+.++.. ...+ ..|...|.+++|+| ++.+|++++.||.|++||+++++.+..+ ..|... +.++.|+
T Consensus 157 ~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 157 LVWDVGTGAA------VLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp EEEETTTTEE------EEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred EEEECCCCCc------cEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 9999987632 3445 57899999999999 7888999999999999999999888887 677665 8999999
Q ss_pred CCCCcEEEEE---eCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 268 PYNEWVLATA---SSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 268 ~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
|++. +|++| +.|+.|++||+++...++.... .|...+.+++|+|+++.++++++.||.|++||+......
T Consensus 230 ~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----- 303 (402)
T 2aq5_A 230 SEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----- 303 (402)
T ss_dssp STTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----
T ss_pred CCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----
Confidence 9988 88888 7899999999998776555544 577889999999999865556778999999999863210
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+. |...|.+++|+|++.+ +++ .++.+++|++.++..
T Consensus 304 -----~~~l~~~~-~~~~v~~~~~sp~~~~-~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 304 -----LHYLSMFS-SKESQRGMGYMPKRGL-EVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp -----EEEEEEEC-CSSCCSEEEECCGGGS-CGG--GTEEEEEEEEETTEE
T ss_pred -----eEeecccc-cCCcccceEEeccccc-cee--cceeEEEEEcCCCcE
Confidence 12233333 6689999999999984 543 577999999987643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=248.33 Aligned_cols=217 Identities=20% Similarity=0.347 Sum_probs=181.9
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg 238 (406)
..+.+|...|.+++|+|+++ +|++|+.|++|++||+..... ..+..+.+|..+|.+++|+|. .+.+|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETH----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCc----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 45778999999999999998 999999999999999975321 234667899999999999863 478999999999
Q ss_pred cEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCC
Q 015484 239 QLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 239 ~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|++||+++++ .+..+..|...|.+++|+|+ +. +|++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999999874 45556778999999999997 66 999999999999999987532 24667899999999999997
Q ss_pred C------------CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC--CcEEEEEe
Q 015484 314 H------------ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND--PWVISSVA 379 (406)
Q Consensus 314 ~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~~l~s~~ 379 (406)
+ ..+|++|+.|+.|++||++.... ...+...+.+|...|.+++|+|++ ..+|++++
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~----------~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc----------eEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 3 23799999999999999876221 113556778999999999999985 23799999
Q ss_pred CCCcEEEEeCCCc
Q 015484 380 DDNTVQVWQMTDS 392 (406)
Q Consensus 380 ~dg~i~iw~~~~~ 392 (406)
.|+.|+||++.+.
T Consensus 227 ~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDRTCIIWTQDNE 239 (297)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCcEEEEEeCCC
Confidence 9999999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=247.36 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=208.5
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++| |++ .+|++|+.||.|++||+... .....+..|...|.+++|+|++. +|++|+.|
T Consensus 12 ~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 80 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKD 80 (313)
T ss_dssp EEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTT-EEEEEETT
T ss_pred HHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCC-EEEEecCC
Confidence 334579999999999 877 57999999999999999763 33566778999999999999988 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|.|++|++....... ....+..|...|.+++|+ +.++++++.||.|++|| .++....+..|...+.+++|.|
T Consensus 81 g~i~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 81 TMINGVPLFATSGED---PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp SCEEEEETTCCTTSC---C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred CeEEEEEeeecCCCC---cccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence 999999998764332 335567899999999994 56899999999999999 5666777788999999999998
Q ss_pred -CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 -YNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 -~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
++. ++++++.||.|++||.. .....+.. |...|.+++|+|++. +++++.||.|++||++.
T Consensus 153 ~~~~-~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~------------ 214 (313)
T 3odt_A 153 FSEN-KFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHT------------ 214 (313)
T ss_dssp TTTT-EEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTT------------
T ss_pred CCCC-EEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCc------------
Confidence 565 99999999999999943 23556666 899999999999985 88999999999999986
Q ss_pred CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+.+|...|.+++|+|++. +++++.||.|++||+.++..
T Consensus 215 --~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 215 --GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp --CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCE
T ss_pred --hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCce
Confidence 356677788999999999999994 77889999999999988753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=254.05 Aligned_cols=253 Identities=14% Similarity=0.120 Sum_probs=206.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+|.+.|++++|+|++ .+|++++.||.|+||++..... ..+...+.+|...|.+++|+|++..+|++|+.||.|+
T Consensus 9 ~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 699999999999998 6899999999999999987421 1123456689999999999997432799999999999
Q ss_pred EEeC-CCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---------CcccccccccCCC
Q 015484 193 LWDV-SALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---------NQTQQRVKAHEKE 260 (406)
Q Consensus 193 iwd~-~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 260 (406)
+||+ ..+.. ..+.. |...|.+++|+| +.++++++.||.|++||+++ ++.+..+. +...
T Consensus 83 ~wd~~~~~~~-------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 83 KVDLIGSPSF-------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp EECSSSSSSE-------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred EEEeccCCce-------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 9999 76532 44566 899999999998 78899999999999999998 77777776 8899
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCCC-cEEecCCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCc
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRK-MTVP-LHILSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGD 337 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~ 337 (406)
|.+++|+|++ +++++.|+.|++||++. ...+ ......|...|.+++|+| +++ ++++++.||.|++|++...+.
T Consensus 153 v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 153 IFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCC
T ss_pred eEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCc
Confidence 9999999875 88999999999999998 5543 344567888999999999 886 699999999999999987410
Q ss_pred ccccccccCCCCeeEEEecCC---------CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 338 EQLELDAEDGPPELLFSHGGH---------KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h---------~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.. .......+.+| ...|.+++|+|+++ +|++++.||.|++||+.++..
T Consensus 229 ~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 229 DY--------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp ST--------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEE
T ss_pred cc--------ccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhH
Confidence 00 01223334445 44999999999999 588999999999999987743
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=255.66 Aligned_cols=262 Identities=12% Similarity=0.144 Sum_probs=207.3
Q ss_pred EEEEe-ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKI-RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~-~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....+ .|.+.|++++|+|++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+|++. +|++|+
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 200 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDG--------SNPRTLIGHRATVTDIAIIDRGR-NVLSAS 200 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CCCEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCC--------cCceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence 34443 799999999999998 68999999999999999873 44678899999999999999988 999999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeecc---------------------CccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAH---------------------ESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------------~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
.||+|++||+.+++....+ .....+ ...+.+++|+| ++.++++++.||.|++||+
T Consensus 201 ~d~~v~iwd~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTF---NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp TTSCEEEEETTTTEEEEEE---CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEET
T ss_pred CCCcEEEeECCCCceeEEe---ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEEC
Confidence 9999999999876432221 111112 34555666677 6789999999999999999
Q ss_pred CCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 246 RTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 246 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
++++....+ ..|...|.+++|+|++..+|++|+.||.|++||+++...++..+.. |...|.++.|. +++ +|++++.
T Consensus 277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~ 354 (420)
T 3vl1_A 277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGF 354 (420)
T ss_dssp TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETT
T ss_pred CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecC
Confidence 998876666 4578899999999999878999999999999999998777777776 66778888665 554 7999999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC---cEEEEEeCCCcEEEEeCCC
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP---WVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~~l~s~~~dg~i~iw~~~~ 391 (406)
||.|++|++............ .......+|...|.+++|+|+++ .+ ++++.+|.+.+|++++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEF-----ETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNFCALYNLSN 419 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECT-----TSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTEEEEEESCC
T ss_pred CccEEEEeccCCCCCccceec-----cCccEEccCCcceEEEEEccCCCCcceE-EEEcCCceEEEEeccC
Confidence 999999999874332211110 11122457888999999999988 54 4556789999999875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=241.73 Aligned_cols=247 Identities=19% Similarity=0.363 Sum_probs=204.6
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|...|++++|+|++ .+||+|+.||+|+||++.+. +....+.+|...+.++.+. +. .+++|+.++
T Consensus 62 ~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~--------~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~ 129 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQ--------KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSG 129 (318)
T ss_dssp ECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred EecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCc--------eeEEEecCccceEEEeecC--CC-EEEEEecCC
Confidence 334688899999999999 68999999999999999884 3467788999988877665 45 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----ccccccCCCeeEEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLS 265 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~ 265 (406)
.+++|+...... .+..+.+|...+..+.+++ .+.++++++.||.|++||+++++.. .....+...|.+++
T Consensus 130 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 130 HIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp EEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE
T ss_pred ceEeeecCCCce-----eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE
Confidence 999999877532 2456678999999999998 6889999999999999999987653 23356778899999
Q ss_pred ecCCCCcEEE--EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCcEEEEeCCCCCcccccc
Q 015484 266 FNPYNEWVLA--TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS-SADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 266 ~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
++|.+..++. +++.++.|++||.+... ......+...+..+.|+|.++.++++ ++.|+.|+|||+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-------- 273 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGA--CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-------- 273 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCC--EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------
T ss_pred ecCCCCcEEEEEecCCCCEEEEEeccccc--ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------
Confidence 9998876654 55678899999998755 34445677889999999999864433 34799999999987
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.+++..+.+|.+.|++++|+|+++ +|+||+.||.|+|||+.+
T Consensus 274 ------~~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 274 ------MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE 315 (318)
T ss_dssp ------CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred ------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence 467778899999999999999999 589999999999999865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=255.50 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=200.1
Q ss_pred EeecCCceeEEEEcCCC--CcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQK--PNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..+|.+.|++++|+|++ ..+|++|+.||.|+||++.... ......+.+|...|.+++|+|++. +|++|+.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 107 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCD 107 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCC-EEEEEcCC
Confidence 44799999999999984 4789999999999999998621 122367788999999999999888 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--eCCCCCEEEEEecCCcEEEEECCCCcccccccccC--------
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-------- 258 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------- 258 (406)
|.|++||+.++.. .....|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+.
T Consensus 108 g~v~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 108 KTAKMWDLSSNQA-------IQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179 (368)
T ss_dssp SEEEEEETTTTEE-------EEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE
T ss_pred CcEEEEEcCCCCc-------eeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec
Confidence 9999999987642 224568999999999 76 67889999999999999999887765554322
Q ss_pred ---------------------------------CCeeEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC--CCcEEecC
Q 015484 259 ---------------------------------KEVNYLSFNPYNE---WVLATASSDTTVALFDMRKMT--VPLHILSS 300 (406)
Q Consensus 259 ---------------------------------~~v~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~ 300 (406)
..+.++++.+... ..+++++.||.|++||++... ..+..+..
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 2233444433322 138999999999999998763 23566777
Q ss_pred CCC------------CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 301 HTE------------EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 301 h~~------------~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
|.. .|.+++|+|+++ +|++++.||.|++||+.. ..++..+.+|...|.+++|+
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~s 324 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDA--------------RTKLKTSEQLDQPISACCFN 324 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTT--------------TEEEEECCCCSSCEEEEEEC
T ss_pred eecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCC--------------CcEEEEecCCCCCceEEEEC
Confidence 765 799999999997 599999999999999986 46677888999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC
Q 015484 369 KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|+++ +|++++.|+..+.|++-
T Consensus 325 ~~g~-~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 HNGN-IFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTSS-CEEEEECCCSTTCGGGC
T ss_pred CCCC-eEEEEeccccccccccc
Confidence 9999 58888888765555543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=257.07 Aligned_cols=233 Identities=9% Similarity=0.055 Sum_probs=166.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--------CCCCeEEEecCCCeEEEEeCCCcc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--------FKEGYLVSGSHDNKICLWDVSALA 200 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~ 200 (406)
.+||+++.|++|+|||........ ..+...+.+|.+.|++++|+| ++. +|++|+.|++|+|||+.++.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~---~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIIT---QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEE---EEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTE
T ss_pred CEEEEEeCCCcEEEEECCCCccce---eeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCc
Confidence 579999999999999998743211 122345679999999999997 566 99999999999999997653
Q ss_pred CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------------------------c
Q 015484 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------------------------K 255 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------~ 255 (406)
. ......|...+.+++|+|.+..+|++++.||.|++||+++++..... .
T Consensus 178 ~------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 178 P------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp E------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred e------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 2 34455788999999999976678999999999999999887543211 3
Q ss_pred ccCCCeeEEEec-CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEE------------------EEcC-CCC
Q 015484 256 AHEKEVNYLSFN-PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV------------------EWDP-NHE 315 (406)
Q Consensus 256 ~~~~~v~~i~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i------------------~~~p-~~~ 315 (406)
+|...+.++.|. |++. .|++++.|+.+++||++.... ...+..|...+..+ .|+| .+.
T Consensus 252 ~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred cccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 567788999986 6777 899999999999999987543 33333444333333 2333 344
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.++++|+.||.|+|||+... .......+|..+|.+++|+|+|+ +||+++.+| +.+|++
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~--------------~~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEK--------------DSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEETTTTEEEEEETTCT--------------TCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEE
T ss_pred EEEEEECCCCEEEEEECCCC--------------cEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEE
Confidence 46778889999999999862 23334456788999999999999 688988665 666654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=254.15 Aligned_cols=318 Identities=16% Similarity=0.229 Sum_probs=221.5
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecC-
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVD- 115 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~- 115 (406)
-+..+++|.|+. ..++.|.. ++.|.|+++.-.. ... . ...+.++.. ...+|.
T Consensus 29 ~~V~~v~~s~~g------------~~la~g~~-----dg~v~iw~~~~~~---~~~--~----~~~~~~~~~~~~~~h~~ 82 (447)
T 3dw8_B 29 DIISTVEFNHSG------------ELLATGDK-----GGRVVIFQQEQEN---KIQ--S----HSRGEYNVYSTFQSHEP 82 (447)
T ss_dssp GSEEEEEECSSS------------SEEEEEET-----TSEEEEEEECC----------C----CCCCCEEEEEEEECCCC
T ss_pred CcEEEEEECCCC------------CEEEEEcC-----CCeEEEEEecCCC---CCC--c----ccccceeEecccccccc
Confidence 367899998732 25666655 3789999877331 000 0 011234333 344687
Q ss_pred -----------CceeEEEEcCCCC-cEEEEEeCCCeEEEEeCCCcccccc-----------------CCC----------
Q 015484 116 -----------GEVNRARCMPQKP-NLVGTKTSSCEVYVFDCAKQAEKQQ-----------------DDC---------- 156 (406)
Q Consensus 116 -----------~~v~~i~~~p~~~-~~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~---------- 156 (406)
+.|++++|+|++. .+|++++.||.|++|++........ ...
T Consensus 83 ~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (447)
T 3dw8_B 83 EFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDL 162 (447)
T ss_dssp EEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEE
T ss_pred cccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhe
Confidence 8899999999863 4789999999999999876332100 000
Q ss_pred ----CCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee----eeeeccCccEEEEEeeCCC
Q 015484 157 ----DPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM----HVYEAHESVVEDVSWHLKN 227 (406)
Q Consensus 157 ----~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~p~~ 227 (406)
.+... ..+|...|.+++|+|++. +|++| .||.|++||+..... .+..+ ..+..|...|.+++|+|++
T Consensus 163 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 163 MVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp EEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSC
T ss_pred eeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCC
Confidence 00112 357999999999999988 99998 799999999985321 11100 1355788999999999955
Q ss_pred CCEEEEEecCCcEEEEECCCCcc----cccccccCC------------CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 015484 228 ENLFGSAGDDCQLMIWDLRTNQT----QQRVKAHEK------------EVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291 (406)
Q Consensus 228 ~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~ 291 (406)
..+|++++.||.|++||+++++. ...+..|.. .|.+++|+|++. +|++++. +.|++||++..
T Consensus 239 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 239 CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC
T ss_pred CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC
Confidence 59999999999999999999886 566666665 899999999998 8899988 99999999975
Q ss_pred CCCcEEecCCCCC---------------eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC------CCCe
Q 015484 292 TVPLHILSSHTEE---------------VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED------GPPE 350 (406)
Q Consensus 292 ~~~~~~~~~h~~~---------------v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~ 350 (406)
..++..+..|... +..++|+|+++ +|++++.||.|++||+.............. ..+.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR 395 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence 5567788877532 33499999997 589999999999999987443211100000 0000
Q ss_pred ------------eEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 351 ------------LLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 351 ------------~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.......+...|..++|+|++. +||+++.++ +++|.-.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred cccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence 0000113456799999999999 688887665 8888643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=254.74 Aligned_cols=251 Identities=21% Similarity=0.272 Sum_probs=209.3
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC--CCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP--FKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~ 186 (406)
....+|.+.|++++|+|++ +|++|+.||+|++||+.+. .....+.+|...|.+++|++ ++. +|++|+
T Consensus 156 ~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s 224 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGS 224 (464)
T ss_dssp EEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCE-EEEEEE
T ss_pred EEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCC-EEEEEc
Confidence 3344799999999999977 7999999999999999873 33677889999999999995 455 999999
Q ss_pred CCCeEEEEeCCCccCCceee-----------------eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 187 HDNKICLWDVSALAQDKVID-----------------AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
.||+|++||+.+........ ....+.+|...+.++.. ++.++++++.||.|++||+++++
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999998764321110 13456778888888753 47889999999999999999999
Q ss_pred ccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 250 TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 250 ~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.+..+.+|...|.+++|+|++. ++++|+.||.|++||++++.. +..+.+|...|.+++|++ . +|++++.||.|++
T Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~v 376 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRG 376 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECS--S-EEEEEETTSEEEE
T ss_pred EEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEE
Confidence 9999999999999999999998 999999999999999998654 888999999999999984 3 6999999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
||+... ...... .|...+..++|+|++. ++++++ ||.|++||+.++...
T Consensus 377 wd~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 377 WDANDY--------------SRKFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EETTTC--------------CEEEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEE
T ss_pred EECCCC--------------ceeeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEE
Confidence 999862 222222 2566788899999998 688887 899999999988653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=272.51 Aligned_cols=286 Identities=18% Similarity=0.264 Sum_probs=236.0
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+. ..+++|.. .+.|.|+++.- .-.......|.+.|
T Consensus 15 ~v~~i~~sp~~------------~~la~~~~-----~g~v~iwd~~~-------------------~~~~~~~~~~~~~v 58 (814)
T 3mkq_A 15 RVKGIDFHPTE------------PWVLTTLY-----SGRVEIWNYET-------------------QVEVRSIQVTETPV 58 (814)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEETTT-------------------TEEEEEEECCSSCE
T ss_pred ceEEEEECCCC------------CEEEEEeC-----CCEEEEEECCC-------------------CceEEEEecCCCcE
Confidence 56788998842 25666653 36788875321 11233444699999
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
++++|+|++ .+|++|+.||.|+||++.+. .....+.+|...|.+++|+|+++ +|++|+.||.|++||+.+
T Consensus 59 ~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 59 RAGKFIARK-NWIIVGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEEEEGGG-TEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCC-CEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCC
Confidence 999999999 68999999999999999873 34677889999999999999998 999999999999999976
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-CCeeEEEecC--CCCcEEE
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-KEVNYLSFNP--YNEWVLA 275 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~--~~~~~l~ 275 (406)
+. .....+..|...|.+++|+|.++..|++++.||.|++||++++.....+..+. ..+.+++|+| ++. +|+
T Consensus 129 ~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~ 202 (814)
T 3mkq_A 129 NW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMI 202 (814)
T ss_dssp TS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEE
T ss_pred Cc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEE
Confidence 52 12355678999999999999667899999999999999999888777765444 8899999999 887 999
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+++.||.|++||+++... +..+..|...|.+++|+|+++ +|++++.||.|++||+.. ...+..+
T Consensus 203 ~~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~ 266 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST--------------YKVEKTL 266 (814)
T ss_dssp EECTTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT--------------CSEEEEE
T ss_pred EEeCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEe
Confidence 999999999999988654 788889999999999999997 699999999999999986 3566677
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..|...+.+++|+|++..++++++.|+.+.+|++..+
T Consensus 267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 7888999999999998754445555778999998654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=255.24 Aligned_cols=245 Identities=25% Similarity=0.400 Sum_probs=206.7
Q ss_pred EEEEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 108 IAQKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 108 ~~~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.....+|.+.| .++.+. + .+|++|+.||+|++||+.+. .....+.+|...|.+++|++++ .|++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~--~l~s~s 180 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGG--ILVSGS 180 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTT--EEEEEE
T ss_pred eEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCC--EEEEEe
Confidence 34456788775 666664 3 58999999999999999873 3467788999999999999865 899999
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC-CCCCEEEEEecCCcEEEEECCCCccc--------------
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL-KNENLFGSAGDDCQLMIWDLRTNQTQ-------------- 251 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~-------------- 251 (406)
.||+|++||+.++. .+..+.+|...|.+++|++ .++.++++++.||.|++||++++...
T Consensus 181 ~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 181 TDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp TTSCEEEEETTTTE------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred CCCCEEEEECCCCc------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 99999999998764 3456678999999999985 25688999999999999999876532
Q ss_pred ---------ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 252 ---------QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 252 ---------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..+.+|...+.++. +++. ++++|+.||.|++||+++... +..+.+|...|.+++|+|+++ ++++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERK-RCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTT-EEEEEE
T ss_pred ccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCC-EEEEEe
Confidence 23466777887774 5566 899999999999999998654 788899999999999999997 699999
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.||.|++||+++ ...+..+.+|...|.+++|++ . .+++++.||.|++||+.++.
T Consensus 330 ~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 330 MDTTIRIWDLEN--------------GELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp TTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEEECCC--------------CcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCc
Confidence 999999999986 467778889999999999984 4 79999999999999998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=239.48 Aligned_cols=277 Identities=13% Similarity=0.142 Sum_probs=223.9
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..++.|.|+. ..++.|.. ++.|.++++.-. . +.........|...|
T Consensus 13 ~v~~~~~s~~~------------~~l~~~~~-----d~~v~iw~~~~~---------~-------~~~~~~~~~~~~~~v 59 (342)
T 1yfq_A 13 YISDIKIIPSK------------SLLLITSW-----DGSLTVYKFDIQ---------A-------KNVDLLQSLRYKHPL 59 (342)
T ss_dssp CEEEEEEEGGG------------TEEEEEET-----TSEEEEEEEETT---------T-------TEEEEEEEEECSSCE
T ss_pred cEEEEEEcCCC------------CEEEEEcC-----CCeEEEEEeCCC---------C-------ccccceeeeecCCce
Confidence 57789998842 15566553 378999987722 0 123445566899999
Q ss_pred eEEEEcCCCCc-EEEEEeCCCeEEEEeC-CCccccccCCCCCceeeeC--CCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 119 NRARCMPQKPN-LVGTKTSSCEVYVFDC-AKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 119 ~~i~~~p~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
++++|+|++ . +|++|+.||.|++|++ ... ....+.+ |...|.+++|+| +. +|++++.||.|++|
T Consensus 60 ~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 60 LCCNFIDNT-DLQIYVGTVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEEEESS-SEEEEEEETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEE
T ss_pred EEEEECCCC-CcEEEEEcCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEE
Confidence 999999998 6 8999999999999999 763 1356777 999999999999 76 99999999999999
Q ss_pred eCCC---------ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-Cccc--ccccccCCCee
Q 015484 195 DVSA---------LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQ--QRVKAHEKEVN 262 (406)
Q Consensus 195 d~~~---------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~--~~~~~~~~~v~ 262 (406)
|+.+ ... +..+. |...|.+++|+|. . +++++.|+.|++||+++ +... .....+...+.
T Consensus 128 d~~~~~~~~~~~~~~~------~~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~ 197 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLN------SNNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197 (342)
T ss_dssp CHHHHTTBCEEEEESC------SSSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred cccccccccccccCCe------eeEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCccccccceeeecCCCCcee
Confidence 9876 322 22333 7889999999973 3 88999999999999998 5532 23356788999
Q ss_pred EEEecC-CCCcEEEEEeCCCcEEEEeCCCC-----CCCcEEecCCCC---------CeEEEEEcCCCCCEEEEEeCCCcE
Q 015484 263 YLSFNP-YNEWVLATASSDTTVALFDMRKM-----TVPLHILSSHTE---------EVFQVEWDPNHETVLASSADDRRL 327 (406)
Q Consensus 263 ~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~h~~---------~v~~i~~~p~~~~~l~s~~~dg~i 327 (406)
+++|+| ++. ++++++.||.|++||++.. ..+...+..|.. .|.+++|+|+++ +|++++.||.|
T Consensus 198 ~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 275 (342)
T 1yfq_A 198 DVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGII 275 (342)
T ss_dssp EEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCE
T ss_pred EEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceE
Confidence 999999 888 9999999999999999886 355778888865 999999999997 58999999999
Q ss_pred EEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEeCCCc-EEEEeC
Q 015484 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVADDNT-VQVWQM 389 (406)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~~dg~-i~iw~~ 389 (406)
++||+.+ ...+..+.+| ...|.+++ |+++ +|++++.||. .+.|..
T Consensus 276 ~vwd~~~--------------~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 276 SCWNLQT--------------RKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEETTT--------------TEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred EEEcCcc--------------HhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence 9999986 4667778888 99999999 9998 6999999998 555443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=252.34 Aligned_cols=250 Identities=21% Similarity=0.344 Sum_probs=204.9
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|.+++| ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|++ . .|++|+.||
T Consensus 168 ~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg 233 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDR 233 (435)
T ss_dssp EECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT--T-EEEEEETTS
T ss_pred EEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCC
Confidence 34579999999999 44 68999999999999999873 34677889999999999973 4 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
.|++||+.++... .....+.+|...|.+++|. +.++++|+.||.|++||+++++.+..+..|...|.+++++
T Consensus 234 ~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-- 305 (435)
T 1p22_A 234 SIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-- 305 (435)
T ss_dssp CEEEEECSSSSCC---EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--
T ss_pred cEEEEeCCCCCCc---eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--
Confidence 9999999886542 2235567899999999994 6789999999999999999999999999999999999995
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. ++++|+.||.|++||++++.. +..+.+|...|.+++| ++. +|++|+.||.|++||+......... ...
T Consensus 306 ~~-~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~ 375 (435)
T 1p22_A 306 DR-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP-----AGT 375 (435)
T ss_dssp TT-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC-----TTT
T ss_pred CC-EEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc-----ccc
Confidence 45 899999999999999998654 8889999999999999 454 6999999999999999763321110 012
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+|...|.+++| ++. .|++++.||.|++|++.++..
T Consensus 376 ~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp TEEEEECCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC------
T ss_pred hheeeccCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCC
Confidence 267778899999999999 555 589999999999999987654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=287.75 Aligned_cols=250 Identities=21% Similarity=0.379 Sum_probs=218.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ .+||+|+.||+|+|||+.+. .....+.+|...|.+++|+|++. +|++|+.|
T Consensus 609 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~--------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d 678 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETG--------EKLLDIKAHEDEVLCCAFSSDDS-YIATCSAD 678 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred EEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCC--------CEEEEeccCCCCEEEEEEecCCC-EEEEEeCC
Confidence 3456899999999999999 68999999999999999873 44677889999999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
|+|++||+.++. .+..+.+|...|.+++|+|. +..++++++.||.|++||+++++....+.+|...|++++|+
T Consensus 679 ~~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 679 KKVKIWDSATGK------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp SEEEEEETTTCC------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred CeEEEEECCCCc------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence 999999998864 34566789999999999985 35688899999999999999999998999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCC-----------------------------------------------------
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVP----------------------------------------------------- 294 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------------------- 294 (406)
|++. +|++++.||.|++||+++....
T Consensus 753 p~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 753 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp SSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred cCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 9999 9999999999999998754210
Q ss_pred c-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 295 L-HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 295 ~-~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
+ ....+|...|.+++|+|+++ ++++++.||.|++||+.. ...+..+.+|...|.+++|+|+++
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~- 895 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGS- 895 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-
T ss_pred eeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCC-
Confidence 0 01126778899999999987 689999999999999986 466777889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 015484 374 VISSVADDNTVQVWQMTD 391 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~ 391 (406)
.+++++.||.|++|++.+
T Consensus 896 ~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEEEETTSCEEEEEHHH
T ss_pred EEEEEeCCCeEEEEEccc
Confidence 689999999999999764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=262.09 Aligned_cols=264 Identities=11% Similarity=0.205 Sum_probs=192.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCc---cccccCCCCCceeee--C--CCCCeeEEE--ecCCCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQ---AEKQQDDCDPDLRLK--G--HDKEGYGLS--WSPFKEGY 181 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~~~~~~~ 181 (406)
.+.|.+.|++++|+|++ .+|++|+.||.|++||+... ..........+..+. . +...+.++. +++++. +
T Consensus 107 ~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 184 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-L 184 (437)
T ss_dssp EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-E
T ss_pred eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-E
Confidence 45799999999999988 68999999999999999521 110000000111111 1 456666776 556677 9
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccC
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHE 258 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~ 258 (406)
|++|+.||.|++||++++.. +..+.. |...|++++|+| ++.+|++|+.||.|++||+++++.+..+. .|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLER------LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp EEEEETTSEEEEEETTTCCE------EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred EEEEeCCCeEEEEeCCCCee------eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence 99999999999999988643 344555 788999999999 68999999999999999999988888774 677
Q ss_pred CCeeEEEecC----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--------------------------CCCCeEEE
Q 015484 259 KEVNYLSFNP----YNEWVLATASSDTTVALFDMRKMTVPLHILSS--------------------------HTEEVFQV 308 (406)
Q Consensus 259 ~~v~~i~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--------------------------h~~~v~~i 308 (406)
..|.+++|+| ++. +|++|+.||.|++||++++.. +..+.. |...|.++
T Consensus 258 ~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 258 APITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp EEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 8999996665 455 899999999999999987653 333332 56678899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc-----------------------CCCCeeEEEecCCCCCeeeE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE-----------------------DGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~v~~~ 365 (406)
+|+ +++ +|++++.||.|++||+............. ............|...|+++
T Consensus 336 ~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 336 SVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEC-Cce-EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 999 554 79999999999999998754332221100 00000111123489999999
Q ss_pred EeCCC--CCcEEEEEeCCCcEEEEe
Q 015484 366 SWNKN--DPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 366 ~~s~~--~~~~l~s~~~dg~i~iw~ 388 (406)
+|+++ +. +|++|+.||.|+||+
T Consensus 414 ~~~~~~~~~-~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 414 STCEVDETP-LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEESSSSE-EEEEEETTSCEEEEC
T ss_pred eeeccCCce-EEEEEcCCceEEEeC
Confidence 99998 55 899999999999995
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=249.63 Aligned_cols=246 Identities=18% Similarity=0.302 Sum_probs=200.6
Q ss_pred EEEeecCCc--eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGE--VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~--v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|... +.++.|++. .+++++.||.|++|++.+.. ....+.. |...|.+++|+|++. +|++|
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~---~l~~~~~d~~v~lw~~~~~~--------~~~~~~~~~~~~v~~v~~s~~~~-~l~~~ 152 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNL---NVVAVALERNVYVWNADSGS--------VSALAETDESTYVASVKWSHDGS-FLSVG 152 (401)
T ss_dssp EECTTCCCCTTCBCEEECTT---SEEEEEETTEEEEEETTTCC--------EEEEEECCTTCCEEEEEECTTSS-EEEEE
T ss_pred eeCCCCcCCceEEEEeecCC---CEEEEECCCeEEEeeCCCCc--------EeEeeecCCCCCEEEEEECCCCC-EEEEE
Confidence 333356554 455666652 36778899999999998742 2333443 889999999999888 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeEE
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~i 264 (406)
+.||.|++||+.+++. +..+..|...|.+++|+ +.++++++.||.|++||++. ...+..+..|...|.++
T Consensus 153 ~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 153 LGNGLVDIYDVESQTK------LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp ETTSCEEEEETTTCCE------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCCCeEEEEECcCCeE------EEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999999987642 35566899999999996 46899999999999999994 55577778899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCCcccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--DDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 342 (406)
+|+|++. +|++|+.||.|++||+++... +..+..|...|.+++|+|++..++++++ .|+.|++||+..
T Consensus 224 ~~~~~~~-~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-------- 293 (401)
T 4aez_A 224 AWRSDGL-QLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-------- 293 (401)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--------
T ss_pred EEcCCCC-EEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--------
Confidence 9999988 999999999999999998554 7788899999999999999888888876 799999999986
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE--EeCCCcEEEEeCCCcc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS--VADDNTVQVWQMTDSI 393 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s--~~~dg~i~iw~~~~~~ 393 (406)
...+..+. +...|.+++|+|++++ +++ |+.||.|++|++.++.
T Consensus 294 ------~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 294 ------GARVNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp ------CCEEEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTE
T ss_pred ------CCEEEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcc
Confidence 23344443 5678999999999995 556 3489999999998753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=258.89 Aligned_cols=217 Identities=15% Similarity=0.244 Sum_probs=180.1
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
......+|...|++|+|+|.+..+||+|+.||.|+|||+.++... ....+.+|...|++|+|+|.++.+|++++.|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----TFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 344567799999999999976669999999999999999876432 2244567999999999999788999999999
Q ss_pred CcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 238 CQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
|+|++||++++...... ..+...+.+++|+|++. +|++|+.||.|++||++.. .+..+.+|...|.+++|+|+++
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCc
Confidence 99999999876443222 33445678999999998 9999999999999999753 3677889999999999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.+|++++.|+.|+|||++..... ..+....+|...|++++|+|++. +|++++.||.|+||++.++.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGK-----------ASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSS-----------SCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS
T ss_pred eEEEEecCcceeeEEeccccccc-----------ceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc
Confidence 88999999999999999874322 11222357899999999999999 68999999999999998753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=263.08 Aligned_cols=254 Identities=19% Similarity=0.329 Sum_probs=213.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC-eeEEEecC--CCCCeEEEecCCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-GYGLSWSP--FKEGYLVSGSHDN 189 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~~l~s~~~dg 189 (406)
.|.+.|++++|+|++ .+||+++ ++.|+||++.+... ...+...+.+|... |++++|+| ++. +|++|+.||
T Consensus 16 ~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg 88 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESG 88 (615)
T ss_dssp CCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTS
T ss_pred CccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCC
Confidence 578999999999999 5788877 78999999986311 11457788999999 99999999 988 999999999
Q ss_pred eEEEEeCCCccCCc--eeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeE
Q 015484 190 KICLWDVSALAQDK--VIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 190 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
.|++||+.++.... .......+..|...|.+++|+| ++.++++++.+ +.|++|| .++.+..+..|...|.+
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence 99999997541111 1233456677899999999999 67888888877 6888888 56677788889999999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC---CeEEEEEcCC-CCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE---EVFQVEWDPN-HETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~---~v~~i~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
++|+|+++.++++++.|+.|++||++.... +..+..|.. .|.+++|+|+ ++ +|++++.||.|++||+..
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~----- 238 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS----- 238 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT-----
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC-----
Confidence 999999987899999999999999987654 778888999 9999999999 76 699999999999999986
Q ss_pred ccccccCCCCeeEEEe-c---CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 340 LELDAEDGPPELLFSH-G---GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+.+..+ . +|...|.+++|+ ++. +|++++.|+.|++|++.++..
T Consensus 239 ---------~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 239 ---------GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp ---------CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEE
T ss_pred ---------CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcE
Confidence 3445555 4 799999999999 888 789999999999999987643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=241.70 Aligned_cols=251 Identities=19% Similarity=0.283 Sum_probs=196.4
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCce
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEV 118 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 118 (406)
+..+++|.|+. .+++.|.. ++.|.++++.-. .........+|.+.|
T Consensus 15 ~V~~v~~s~~g------------~~lasgs~-----D~~v~lwd~~~~-----------------~~~~~~~l~gH~~~V 60 (316)
T 3bg1_A 15 MIHDAQMDYYG------------TRLATCSS-----DRSVKIFDVRNG-----------------GQILIADLRGHEGPV 60 (316)
T ss_dssp CEEEEEECGGG------------CEEEEEET-----TTEEEEEEEETT-----------------EEEEEEEEECCSSCE
T ss_pred eEEEeeEcCCC------------CEEEEEeC-----CCeEEEEEecCC-----------------CcEEEEEEcCCCccE
Confidence 67788997731 25666554 478889887621 011233455799999
Q ss_pred eEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCCeEEEEe
Q 015484 119 NRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 119 ~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd 195 (406)
++++|+|. ...+|++|+.|++|+|||+... .......+.+|...|.+++|+|+ +. +|++|+.||+|++||
T Consensus 61 ~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~------~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 61 WQVAWAHPMYGNILASCSYDRKVIIWREENG------TWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLT 133 (316)
T ss_dssp EEEEECCGGGSSCEEEEETTSCEEEECCSSS------CCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEE
T ss_pred EEEEeCCCCCCCEEEEEECCCEEEEEECCCC------cceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEe
Confidence 99999863 2368999999999999999863 23345677899999999999997 55 899999999999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCC----------------CCEEEEEecCCcEEEEECCCC---cccccccc
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKN----------------ENLFGSAGDDCQLMIWDLRTN---QTQQRVKA 256 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~ 256 (406)
+..... ......+..|...|.+++|+|.. +.+|++|+.|+.|++||++.. +.+..+.+
T Consensus 134 ~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 134 YTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp ECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred cCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 986532 12224456788899999999842 368999999999999999755 34667788
Q ss_pred cCCCeeEEEecCCC---CcEEEEEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 257 HEKEVNYLSFNPYN---EWVLATASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 257 ~~~~v~~i~~~~~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
|...|++++|+|++ ..+|++++.||+|++||++... .....+..|...|.+++|+|+++ +|++++.||.|+||
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw 289 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLW 289 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEE
Confidence 99999999999986 2389999999999999998632 12344567889999999999997 59999999999999
Q ss_pred eCCC
Q 015484 331 DLNR 334 (406)
Q Consensus 331 d~~~ 334 (406)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=251.07 Aligned_cols=219 Identities=20% Similarity=0.390 Sum_probs=184.6
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc----eeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK----VIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.....|.+.|++++|+|++..+|++++.||.|++|++....... ...+...+.+|...|.+++|+|.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 44567999999999999754499999999999999997631111 13345667789999999999996555999999
Q ss_pred cCCcEEEEECCCCcc-------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC--CCcEEecCCCCCeE
Q 015484 236 DDCQLMIWDLRTNQT-------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--VPLHILSSHTEEVF 306 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~ 306 (406)
.||.|++||++.+.. ...+..|...|.+++|+|.+..+|++++.||.|++||++... .++..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 344567899999999999666699999999999999999863 55778889999999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEE
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQV 386 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~i 386 (406)
+++|+|+++++|++|+.||.|++||++... ..+..+.+|...|.+++|+|+++++|++++.||.|+|
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 999999998889999999999999998632 3345566799999999999999878999999999999
Q ss_pred EeCCC
Q 015484 387 WQMTD 391 (406)
Q Consensus 387 w~~~~ 391 (406)
|++..
T Consensus 349 wd~~~ 353 (430)
T 2xyi_A 349 WDLSK 353 (430)
T ss_dssp EEGGG
T ss_pred EeCCC
Confidence 99987
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=277.80 Aligned_cols=266 Identities=20% Similarity=0.364 Sum_probs=216.6
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~ 187 (406)
....+|.+.|.+++|+|++ .+||+|+.||.|+|||+.+. .....+.+|...|.+++|+|++. .++++|+.
T Consensus 651 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred EEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence 3445799999999999999 68999999999999999873 44778889999999999999532 27899999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------------
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------------- 254 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 254 (406)
||.|++||+.++. +...+.+|...|.+++|+| ++.++++++.||.|++||+++++....+
T Consensus 722 d~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 722 DFFLKLWDLNQKE------CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp TSCEEEEETTSSS------EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred CCeEEEEECCCcc------hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 9999999998864 2355678999999999999 7889999999999999999776432211
Q ss_pred ------------------------------------------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 255 ------------------------------------------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 255 ------------------------------------------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
.+|...|.+++|+|++. ++++++.||.|++||+.+..
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCc
Confidence 15678899999999998 99999999999999999865
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------------------
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ--------------------------------- 339 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------- 339 (406)
. +..+.+|...|.+++|+|+++ .|++++.||.|++|++.......
T Consensus 874 ~-~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1249)
T 3sfz_A 874 K-VADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951 (1249)
T ss_dssp E-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred e-eeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence 4 788899999999999999997 69999999999999965310000
Q ss_pred ------------------------ccccccC--------CCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE
Q 015484 340 ------------------------LELDAED--------GPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387 (406)
Q Consensus 340 ------------------------~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw 387 (406)
......+ ..........+|...|.+++|+|+++ .+++++.||.|++|
T Consensus 952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVW 1030 (1249)
T ss_dssp SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEE
T ss_pred CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEE
Confidence 0000000 11234455668999999999999999 58899999999999
Q ss_pred eCCCccc
Q 015484 388 QMTDSIY 394 (406)
Q Consensus 388 ~~~~~~~ 394 (406)
++.++..
T Consensus 1031 d~~~~~~ 1037 (1249)
T 3sfz_A 1031 NWQTGDY 1037 (1249)
T ss_dssp ETTTTEE
T ss_pred ECCCCce
Confidence 9988754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=267.85 Aligned_cols=261 Identities=13% Similarity=0.139 Sum_probs=198.4
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
+......+|.+.|++++|+|++ .+||+|+.||+|+||+..... ......|...|.+++|+| +. +|+++
T Consensus 8 ~~~~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~---------~~~~~~~~~~V~~l~fsp-g~-~L~S~ 75 (902)
T 2oaj_A 8 LAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVE---------VVIKLEDRSAIKEMRFVK-GI-YLVVI 75 (902)
T ss_dssp EEEEEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCE---------EEEECSSCCCEEEEEEET-TT-EEEEE
T ss_pred eccccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcE---------EEEEcCCCCCEEEEEEcC-CC-EEEEE
Confidence 4456677999999999999999 689999999999999987621 122235788999999999 77 99999
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-----------ccc
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-----------QRV 254 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~ 254 (406)
+.|++|++||+.+++. +..+. |...|++++|+| ++.++++|+.||.|++||+++++.. ..+
T Consensus 76 s~D~~v~lWd~~~~~~------~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKV------LTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp ETTCEEEEEETTTCSE------EEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred ECcCeEEEEECCCCcE------EEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 9999999999988642 23333 667899999999 7889999999999999999987653 334
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC------------------CCCeEEEEEcCCCCC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------------TEEVFQVEWDPNHET 316 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~i~~~p~~~~ 316 (406)
.+|...|++++|+|++...|++|+.||.| +||+++... +..+..| ...|++++|+|++.
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~- 224 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL- 224 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-
Confidence 67889999999999765589999999999 999998543 5555544 57899999999997
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccc-cccc-c-CCCC-eeEEEecCCCCCeeeEEeC----CCCCcEEEEEeCC-----Cc
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQL-ELDA-E-DGPP-ELLFSHGGHKAKISDFSWN----KNDPWVISSVADD-----NT 383 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~-~~~~-~~~~~~~~h~~~v~~~~~s----~~~~~~l~s~~~d-----g~ 383 (406)
+|++++.||.|++||+++...... .... . ..+. ........|...|++++|+ |++..++++|+.| ..
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 699999999999999987332111 0000 0 0000 0000000245679999995 5544578888776 37
Q ss_pred EEEEeC
Q 015484 384 VQVWQM 389 (406)
Q Consensus 384 i~iw~~ 389 (406)
+++|++
T Consensus 305 v~~~~~ 310 (902)
T 2oaj_A 305 LTMIDL 310 (902)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888885
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=254.95 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=210.9
Q ss_pred EEEeecCCc-eeEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 109 AQKIRVDGE-VNRARCMP--QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 109 ~~~~~h~~~-v~~i~~~p--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
....+|.+. |++++|+| ++ .+||+|+.||.|+||++................+..|...|.+++|+|++. +|+++
T Consensus 57 ~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 134 (615)
T 1pgu_A 57 VQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVV 134 (615)
T ss_dssp EEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred eEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEe
Confidence 445579999 99999999 88 689999999999999997531000001233567788999999999999998 99999
Q ss_pred cCC----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCC--
Q 015484 186 SHD----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-- 259 (406)
Q Consensus 186 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 259 (406)
+.+ +.|.+||... .+..+..|...|.+++|+|++..++++++.||.|++||+++++.+..+..|..
T Consensus 135 ~~~~~~~~~v~~~d~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 135 GEGRDNFGVFISWDSGN--------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp ECCSSCSEEEEETTTCC--------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred ccCCCCccEEEEEECCC--------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 887 7899998322 23566789999999999996555899999999999999999998888888988
Q ss_pred -CeeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCCcEEe-c---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 260 -EVNYLSFNPY-NEWVLATASSDTTVALFDMRKMTVPLHIL-S---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 260 -~v~~i~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
.|.+++|+|+ +. +|++++.||.|++||+++.+. +..+ . .|...|.+++|+ +++ +|++++.||.|++||++
T Consensus 207 ~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 207 SFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVT 282 (615)
T ss_dssp CCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECC
Confidence 9999999999 87 999999999999999998664 6666 5 899999999999 776 79999999999999998
Q ss_pred CCCcccccccccCCCCeeEEEecCC----CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGH----KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
. ...+..+..+ ...+.++.|. ++. .+++++.||.|++|++.++.
T Consensus 283 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 283 T--------------SKCVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDE 330 (615)
T ss_dssp T--------------TEEEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEE
T ss_pred C--------------CcEEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCc
Confidence 6 2444444444 4678888886 666 68999999999999998753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=242.84 Aligned_cols=235 Identities=17% Similarity=0.348 Sum_probs=201.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.+|...|.++++ ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++| ++. +|++|+.||+|
T Consensus 130 ~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i 195 (435)
T 1p22_A 130 SETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DER-VIITGSSDSTV 195 (435)
T ss_dssp CSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCE
T ss_pred cCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeE
Confidence 356778999887 45 68999999999999999873 446778899999999999 466 99999999999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccccccCCCeeEEEecC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~i~~~~ 268 (406)
++||+.++.. +..+..|...|.+++|++ ..+++|+.||.|++||++++... ..+.+|...|.+++|
T Consensus 196 ~vwd~~~~~~------~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 196 RVWDVNTGEM------LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp EEEESSSCCE------EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred EEEECCCCcE------EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 9999988642 356678999999999974 58999999999999999988765 556789999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. ++++|+.||.|++||+++... +..+..|...|.++.|+ ++ ++++|+.||.|++||+++
T Consensus 265 ~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~-------------- 325 (435)
T 1p22_A 265 DDK-YIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC-------------- 325 (435)
T ss_dssp ETT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT--------------
T ss_pred CCC-EEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC--------------
Confidence 455 899999999999999998654 88889999999999995 33 699999999999999986
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...|.+++| ++. +|++|+.||.|++||+.++.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred CCEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence 3566778899999999999 455 79999999999999986654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=237.37 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=189.9
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+|++|.+.|++|+|+|++..+|+||+.||+|++||+.+...... .+...+.+|...|.+++|+| ++.+|++++.|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d 107 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISS-DGQFALSGSWD 107 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-EEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-eeeEEEeCCCCCEEEEEECC-CCCEEEEEccc
Confidence 35578999999999999998655999999999999999987654322 24466788999999999999 78999999999
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-C
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-T 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~ 316 (406)
+.|++|+............+...+..+.+++.+. +|++++.|+.+++||++...........|...+..++|++++. .
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 9999999998888777777888899999999988 8999999999999999876655556778999999999998754 3
Q ss_pred EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 317 VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 317 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++++++.|+.|++||++. ..++..+.+|...|++++|+|+++ +|++++.||.|++||+.+..
T Consensus 187 ~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE
T ss_pred EEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCc
Confidence 678999999999999986 466777889999999999999999 79999999999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=244.23 Aligned_cols=260 Identities=13% Similarity=0.101 Sum_probs=191.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc---cccc--CC----------------------------------
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQA---EKQQ--DD---------------------------------- 155 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~---~~~~--~~---------------------------------- 155 (406)
..++.+++|+|++. +|+++ .++.|++||+.++. .... ..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999995 55554 57899999987754 1000 00
Q ss_pred ----------CCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCC--CccCCceeeeeeeee--ccCccEEE
Q 015484 156 ----------CDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVS--ALAQDKVIDAMHVYE--AHESVVED 220 (406)
Q Consensus 156 ----------~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~--~~~~~i~~ 220 (406)
..+.....+|...|.+++|+|++. +| ++|+.||.|++||+. ++... ..+. .|...|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNVL------KLRKRFCFSKRPNA 154 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSCE------EEEEEEECSSCEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCcee------eeeecccCCCCceE
Confidence 001112235666899999999998 75 899999999999998 54332 2232 56788999
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCcccc----cccccCCCeeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCC
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ----RVKAHEKEVNYLSFNPY---NEWVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
++|+| ++.+|++++.+|.+++|++.+++... .+.+|...|++++|+|+ +. +|++|+.|+.|++||+++...
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce
Confidence 99999 67899999999999999999877654 67889999999999999 77 999999999999999998665
Q ss_pred CcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc----------CCCCe-eEEEecCCCCC
Q 015484 294 PLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE----------DGPPE-LLFSHGGHKAK 361 (406)
Q Consensus 294 ~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~-~~~~~~~h~~~ 361 (406)
+.. +.+|...|.+++|+ +++ +|++++.|+.|++||+............. ..+.. ...........
T Consensus 233 -~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 233 -VDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp -EEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred -eeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 444 66899999999999 876 79999999999999998743211110000 00000 00000123457
Q ss_pred eeeEEeCCCCCcEEEEEe-CCCcEEEEeC
Q 015484 362 ISDFSWNKNDPWVISSVA-DDNTVQVWQM 389 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~-~dg~i~iw~~ 389 (406)
|.+++|+|++++ +++++ .|+.|+||++
T Consensus 310 v~~i~~~~~~~~-l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 310 VSKIIKSKNLPF-VAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEECSSSSE-EEEEETTCSEEEEEEE
T ss_pred EEEEEEeCCCCE-EEEEECCCCeEEEEEe
Confidence 999999999995 66666 8999999999
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-30 Score=237.00 Aligned_cols=308 Identities=17% Similarity=0.198 Sum_probs=203.7
Q ss_pred HhhhhhhcChhHhhhhhcCCCCCCceEEEEec-CCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCC
Q 015484 16 EFTVWKKNTPFLYDLIVSHPLEWPSLTVHWVP-SPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNV 94 (406)
Q Consensus 16 ~~~~wk~~~~~ly~~~~~~~~~~p~~~~~~~p-~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~ 94 (406)
..++|..........+..|. -+..++.|.| +. ..++.|+. ++.|.++++.-. ...
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~------------~~l~~~~~-----dg~i~iw~~~~~---~~~-- 79 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHG--GGINTLDIEPVEG------------RYMLSGGS-----DGVIVLYDLENS---SRQ-- 79 (408)
T ss_dssp HHHHHTEEECTTEEECCCCS--SCEEEEEECTTTC------------CEEEEEET-----TSCEEEEECCCC---SSS--
T ss_pred cceeeccccCcceeeeeccC--CcEEEEEEecCCC------------CEEEEEcC-----CCeEEEEECCCC---ccc--
Confidence 45667665544444444444 3788999987 31 25666654 367888876522 000
Q ss_pred CCCCCCCCCCCeEE--EEE------eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC
Q 015484 95 GGKNENPVIPKVEI--AQK------IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD 166 (406)
Q Consensus 95 ~~~~~~~~~~~~~~--~~~------~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~ 166 (406)
..+.. ... .+|.+.|.+++|+|++..+|++++.||.|++||+..... ...+ .+.
T Consensus 80 ---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~-~~~ 141 (408)
T 4a11_B 80 ---------SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--------ADVF-NFE 141 (408)
T ss_dssp ---------SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--------EEEE-ECS
T ss_pred ---------ceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--------ceec-cCC
Confidence 11111 111 149999999999996657899999999999999987422 3333 377
Q ss_pred CCeeEEEecCCCC--CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 167 KEGYGLSWSPFKE--GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
..+.++.|++.+. .++++|+.||.|++||+.++.. +..+..|...|.+++|+|.+..+|++++.||.|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d 215 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence 8899999998543 2899999999999999987643 3456678999999999996666899999999999999
Q ss_pred CCCCcc-ccc---------------ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC----------------
Q 015484 245 LRTNQT-QQR---------------VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT---------------- 292 (406)
Q Consensus 245 ~~~~~~-~~~---------------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------- 292 (406)
++.+.. ... ...|...|.+++|+|++. +|++++.||.|++||+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 987652 222 256889999999999998 99999999999999998643
Q ss_pred ------------------------------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 293 ------------------------------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 293 ------------------------------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
.++..+.+|...|.+++|+|+++ +|++++.||.|++||+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~----- 368 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEP----- 368 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC--------
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCc-----
Confidence 12455677999999999999997 699999999999999987322
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+.....+ -....+.+.....+.+.+.|+.+++|+..
T Consensus 369 ---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 369 ---------VPDDDET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------------------------------------
T ss_pred ---------cCCCCce---EeccccccccceeecccCccCceeecCCc
Confidence 1111111 11233444333356677889999999765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=236.86 Aligned_cols=243 Identities=20% Similarity=0.374 Sum_probs=199.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.++.|+|++++ +||+|. |++|+|||..++.. .....+.+|...|++|+|+|+|. +|++|+.||+|++||+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~------~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEc
Confidence 46889999754 788775 89999999988422 22344557888999999999998 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
.+++ .+..+.+|...+.++.++ +.++++|+.|+.+++||.+.... +..+.+|...+..+.|+|++. +++
T Consensus 177 ~~~~------~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~ 246 (420)
T 4gga_A 177 QQQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLA 246 (420)
T ss_dssp TTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEE
T ss_pred CCCc------EEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eee
Confidence 8864 346677899999999886 57899999999999999987544 566788999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCC---CCcEEecCCCCCeEEEEEcCCCCCEEEEE--eCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 276 TASSDTTVALFDMRKMT---VPLHILSSHTEEVFQVEWDPNHETVLASS--ADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 276 ~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~i~~~p~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
+++.|+.+++||.+... ..+.....|...|.+++|+|.+..+++++ +.|++|++||+.+ ..
T Consensus 247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--------------~~ 312 (420)
T 4gga_A 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--------------GA 312 (420)
T ss_dssp EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT--------------TE
T ss_pred eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc--------------cc
Confidence 99999999999998754 34677888999999999999988887765 4799999999987 34
Q ss_pred eEEEecCCCCCeeeEEeCCCCCcEEEEE-eCCCcEEEEeCCCccc
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPWVISSV-ADDNTVQVWQMTDSIY 394 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~~l~s~-~~dg~i~iw~~~~~~~ 394 (406)
++.....| ..+.++.|+|++..+++++ +.|+.|+|||+.++..
T Consensus 313 ~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 313 CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 45555544 5699999999999544433 3799999999987643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-29 Score=237.62 Aligned_cols=238 Identities=21% Similarity=0.390 Sum_probs=203.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.|.+++|++ .++++|+.||+|++||+.+. .....+.+|...|.+++|+ +. .|++|+.||
T Consensus 154 ~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg 219 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETG--------ECIHTLYGHTSTVRCMHLH--EK-RVVSGSRDA 219 (445)
T ss_dssp ECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred EEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcC--------cEEEEECCCCCcEEEEEec--CC-EEEEEeCCC
Confidence 3447999999999983 58999999999999999874 3367788999999999996 44 899999999
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCC
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~ 269 (406)
+|++||+.+++ .+..+..|...|.+++| ++.++++++.||.|++||+++++.+..+..|...|.+++| +
T Consensus 220 ~i~~wd~~~~~------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 288 (445)
T 2ovr_B 220 TLRVWDIETGQ------CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D 288 (445)
T ss_dssp EEEEEESSSCC------EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred EEEEEECCCCc------EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C
Confidence 99999998764 23556789999999999 3677889999999999999999998889899999999999 4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
+. .+++|+.||.|++||++++.. +..+..|...+.++.+++ + ++++++.||.|++||+++ .
T Consensus 289 ~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~--------------~ 349 (445)
T 2ovr_B 289 GI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKT--------------G 349 (445)
T ss_dssp SS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTT--------------C
T ss_pred CC-EEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCC--------------C
Confidence 66 899999999999999998664 788899999999998863 3 699999999999999976 2
Q ss_pred eeEEEecC---CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGG---HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~---h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+..+.+ |...|.+++|++ . ++++++.||.|++|++.++..
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE
T ss_pred cEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCCce
Confidence 34445554 888999999974 4 799999999999999998754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-30 Score=240.96 Aligned_cols=250 Identities=12% Similarity=0.121 Sum_probs=198.3
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCC--CccccccCCCCCceeee--CCCCCeeEEEecCCCCCeEEEecCC
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCA--KQAEKQQDDCDPDLRLK--GHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
+|.+.|++++|+|++..++++|+.||.|+||++. .. .....+. .|...|.+++|+|++. +|++|+.+
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~ 170 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKF 170 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCC-EEEEEeCC
Confidence 5778899999999996556999999999999998 42 2344454 6778999999999998 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEE
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLS 265 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~ 265 (406)
|.|++|++........ +...+.+|...|.+++|+|+ ++.+|++++.|+.|++||+++++.+.. +.+|...|.+++
T Consensus 171 g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp SEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEE
T ss_pred CcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEE
Confidence 9999999987654320 22355678999999999993 178999999999999999999888776 568999999999
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------------------------CCCCCeEEEEEcCCCCCEEEE
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-------------------------SHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------~h~~~v~~i~~~p~~~~~l~s 320 (406)
|+ ++. +|++++.|+.|++||++++.. +..+. .....|.+++|+|+++ +|++
T Consensus 249 ~s-d~~-~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 324 (450)
T 2vdu_B 249 CG-KDY-LLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAF 324 (450)
T ss_dssp EC-STT-EEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS-EEEE
T ss_pred EC-CCC-EEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC-EEEE
Confidence 99 888 999999999999999998664 44443 2345799999999997 4667
Q ss_pred Ee-CCCcEEEEeC--CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC-------CCcEEEEeCC
Q 015484 321 SA-DDRRLMVWDL--NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD-------DNTVQVWQMT 390 (406)
Q Consensus 321 ~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~-------dg~i~iw~~~ 390 (406)
++ .|+.|+||++ .... ....+..+.+| ..|.+++|+|++ ++++++. ++.|.+|.+.
T Consensus 325 ~~~~d~~i~iw~~~~~~~~-----------~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 325 FVEATKCIIILEMSEKQKG-----------DLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EETTCSEEEEEEECSSSTT-----------CEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EECCCCeEEEEEeccCCCC-----------ceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEE
Confidence 76 8999999999 3211 12455666677 789999999954 4445433 5568888765
Q ss_pred C
Q 015484 391 D 391 (406)
Q Consensus 391 ~ 391 (406)
.
T Consensus 391 ~ 391 (450)
T 2vdu_B 391 L 391 (450)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=237.32 Aligned_cols=216 Identities=20% Similarity=0.352 Sum_probs=184.8
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~d 237 (406)
...+.+|...|++++|+|++. +|++|+.||.|++||+.... ......+..|...|.+++|+|. ++.+|++++.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCc----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 567889999999999999998 99999999999999997422 2344667789999999999863 27899999999
Q ss_pred CcEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcC
Q 015484 238 CQLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 238 g~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p 312 (406)
|.|++||+++++ .+..+..|...|.+++|+|+ +. +|++++.||.|++||++.... ....+..|...|.+++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 999999999886 56667789999999999999 77 999999999999999998643 3456778999999999999
Q ss_pred -------------CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC---CCcEEE
Q 015484 313 -------------NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---DPWVIS 376 (406)
Q Consensus 313 -------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~l~ 376 (406)
++. +|++++.||.|++||++.... ...+...+.+|...|.+++|+|+ +. +|+
T Consensus 158 ~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~ 225 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLA 225 (379)
T ss_dssp CC----------CTTC-EEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSE-EEE
T ss_pred ccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCc----------ceeeEEEEecccCcEeEEEECCCCCCCC-eEE
Confidence 465 799999999999999976322 12455677889999999999999 66 799
Q ss_pred EEeCCCcEEEEeCCCc
Q 015484 377 SVADDNTVQVWQMTDS 392 (406)
Q Consensus 377 s~~~dg~i~iw~~~~~ 392 (406)
+++.||.|++|++.++
T Consensus 226 s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEETTSCEEEEEESST
T ss_pred EEeCCCEEEEEeCCCC
Confidence 9999999999999875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=231.44 Aligned_cols=238 Identities=11% Similarity=0.139 Sum_probs=181.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
...|.+.|++++|+|++ .+||+|+.+| ++||+...... .... +...+..+++.+.++..+++|+.|++
T Consensus 15 ~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAH--------IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEE--------EEEE--ECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcce--------eeee--ecCCeEEEEEcCCCCEEEEEECCccE
Confidence 35699999999999999 6888888775 78999876321 1222 22347788888877734467888999
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-cccccccccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~~ 269 (406)
|++||+.+++. +..+. +...|.+++|++ ..++++ .++.|++||+.++ +.+..+.. +...+++++
T Consensus 83 v~iWd~~~~~~------~~~~~-~~~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 83 VHIWDDVKKQD------VSRIK-VDAPVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EEEEETTTTEE------EEEEE-CSSCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred EEEEECCCCcE------EEEEE-CCCceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 99999988643 23333 567899999986 234333 4789999999988 66666654 444556666
Q ss_pred CCcEEEE--EeCCCcEEEEeCCCCC--------------CC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc-EEEEe
Q 015484 270 NEWVLAT--ASSDTTVALFDMRKMT--------------VP-LHILSSHTEEVFQVEWDPNHETVLASSADDRR-LMVWD 331 (406)
Q Consensus 270 ~~~~l~~--~~~dg~i~vwd~~~~~--------------~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~-i~iwd 331 (406)
. ++++ |+.||.|++||+++.. .| +..+.+|...|++++|+|+++ +|++|+.||+ |+|||
T Consensus 148 -~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 -G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFK 224 (355)
T ss_dssp -T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEE
T ss_pred -c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEE
Confidence 3 5555 6889999999999754 12 678899999999999999997 7999999998 99999
Q ss_pred CCCCCcccccccccCCCCeeEEEec-C-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHG-G-HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+++ ...+..+. + |...|.+++|+|+++ +|++++.|+.|+||++..+.
T Consensus 225 ~~~--------------~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 225 TED--------------GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTT--------------CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred CCC--------------CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence 986 34555665 5 999999999999999 69999999999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=240.32 Aligned_cols=239 Identities=9% Similarity=0.044 Sum_probs=179.1
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCc
Q 015484 124 MPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDK 203 (406)
Q Consensus 124 ~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 203 (406)
.+++ .+|++|+.||.|++||+.+. +....+. ...|.++.|+|. +++++.|++|++|+........
T Consensus 45 ~~d~-~~l~sg~~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 45 YYDK-WVCMCRCEDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SEEE-EEEEEEEETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred cCCC-CEEEEECCCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence 3445 68999999999999999874 2244443 456778888885 9999999999999877421000
Q ss_pred ---eeeeeeee-eccCccEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEE
Q 015484 204 ---VIDAMHVY-EAHESVVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 204 ---~~~~~~~~-~~~~~~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
....+... ..|...|.+++|+|. ++.++++++.||.|++||+++++..... ..+...+++++|+|++. +|++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg 188 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALY 188 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEE
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEE
Confidence 00111222 256688999999982 4688899999999999999998876555 34556799999999998 99999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 278 SSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
+.||.|++||++++......+.. |...|++++|+|++. +|++++ |+.|++||++....... +..+.
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~-----------~~~~~ 255 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLA-----------YPTYT 255 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBS-----------SCCCB
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCccee-----------ecccc
Confidence 99999999999998764477887 999999999999997 688888 55999999987433211 11111
Q ss_pred CCCCCe--eeEEeCCCCCcEEEEEeC-CCcEEEEeCCCc
Q 015484 357 GHKAKI--SDFSWNKNDPWVISSVAD-DNTVQVWQMTDS 392 (406)
Q Consensus 357 ~h~~~v--~~~~~s~~~~~~l~s~~~-dg~i~iw~~~~~ 392 (406)
.|...+ .+++|+|+++ +|++++. |+.|+||++...
T Consensus 256 ~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp C-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred cccccccceEEEECCCCC-EEEEecCCCCcEEEEEEccc
Confidence 233334 3699999999 5777777 999999998654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=243.13 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=184.9
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-----------------------cCCCCCceeeeCCCCCe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ-----------------------QDDCDPDLRLKGHDKEG 169 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~v 169 (406)
.....|.+++|+|+| .++|+++.|++|+ |........ .........+ .|...|
T Consensus 13 ~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V 88 (588)
T 2j04_A 13 EFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYP 88 (588)
T ss_dssp CCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCE
T ss_pred HhhccEEEEEECCCC-CEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcE
Confidence 445778888888888 5788888888886 422221100 0011111122 457889
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc-----cEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES-----VVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
.+++|+|+|. .||+++.||.|++||... .+..+. |.. .+.+++|+| ++++|++|+.||.|++||
T Consensus 89 ~~vawSPdG~-~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 89 RVCKPSPIDD-WMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp EEEEECSSSS-CEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEE
T ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCc--------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence 9999999999 999999999999999543 234444 554 599999999 789999999999999999
Q ss_pred CCCCcc-------cccc----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEe-cCCCCCeEEEEE
Q 015484 245 LRTNQT-------QQRV----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--PLHIL-SSHTEEVFQVEW 310 (406)
Q Consensus 245 ~~~~~~-------~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-~~h~~~v~~i~~ 310 (406)
+.++.. +.++ .+|...|.+++|+|+| +++++.|+.|++||+..... ....+ .+|...|.+++|
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 998753 3454 5677899999999987 78888999999999987653 23456 478899999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe--CCCCCcEEEEEeCCCcEEEEe
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW--NKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~~l~s~~~dg~i~iw~ 388 (406)
+ +. .||+++ ++.|++||+.. ........+|...|.+++| +|++. .++++++||. ++|.
T Consensus 235 s--g~-~LASa~-~~tIkLWd~~~--------------~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~ 294 (588)
T 2j04_A 235 V--DY-KVVLTC-PGYVHKIDLKN--------------YSISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLL 294 (588)
T ss_dssp E--TT-EEEEEC-SSEEEEEETTT--------------TEEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEE
T ss_pred E--CC-EEEEEe-CCeEEEEECCC--------------CeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEe
Confidence 9 44 688887 79999999986 2332333379999999999 99998 7999999999 9999
Q ss_pred CC
Q 015484 389 MT 390 (406)
Q Consensus 389 ~~ 390 (406)
..
T Consensus 295 ~d 296 (588)
T 2j04_A 295 ED 296 (588)
T ss_dssp SS
T ss_pred ec
Confidence 86
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=262.82 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=183.4
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+. ..++.|+.. +.|.++... ..+......|.+
T Consensus 17 ~~~V~~lafspdg------------~~lAsgs~D-----g~I~lw~~~--------------------~~~~~~~~~~~~ 59 (902)
T 2oaj_A 17 SSKPIAAAFDFTQ------------NLLAIATVT-----GEVHIYGQQ--------------------QVEVVIKLEDRS 59 (902)
T ss_dssp SSCEEEEEEETTT------------TEEEEEETT-----SEEEEECST--------------------TCEEEEECSSCC
T ss_pred CCCcEEEEECCCC------------CEEEEEeCC-----CEEEEEeCC--------------------CcEEEEEcCCCC
Confidence 4467889998842 156666652 677776311 123344567899
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+| + .+|++++.|++|+|||+.+. .....+. |...|++++|+|++. +|++|+.||+|++||+
T Consensus 60 ~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 60 AIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDI 127 (902)
T ss_dssp CEEEEEEET-T-TEEEEEETTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEET
T ss_pred CEEEEEEcC-C-CEEEEEECcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEEC
Confidence 999999999 6 48999999999999999873 2244554 668899999999998 9999999999999999
Q ss_pred CCccCCceeee--e----eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc-------------
Q 015484 197 SALAQDKVIDA--M----HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH------------- 257 (406)
Q Consensus 197 ~~~~~~~~~~~--~----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 257 (406)
.++... .+.. . ....+|...|.+++|+|.+...+++|+.||.| +||+++++.+..+..|
T Consensus 128 ~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 128 DRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp TTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred CCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccc
Confidence 876431 1100 0 22356889999999999667889999999999 9999998877666544
Q ss_pred -----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--e---cC-------------CCCCeEEEEEc---
Q 015484 258 -----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--L---SS-------------HTEEVFQVEWD--- 311 (406)
Q Consensus 258 -----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~---~~-------------h~~~v~~i~~~--- 311 (406)
...|++++|+|++. +|++|+.||.|++||+++++. +.. + .. |...|.+++|+
T Consensus 206 ~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~-~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM-IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp TTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE-EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred cccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcE-EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 57799999999998 999999999999999988653 332 2 11 34579999995
Q ss_pred -CCCCCEEEEEeCC-----CcEEEEeC
Q 015484 312 -PNHETVLASSADD-----RRLMVWDL 332 (406)
Q Consensus 312 -p~~~~~l~s~~~d-----g~i~iwd~ 332 (406)
|++..+|++|+.| ..+.+|++
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 4444567777665 26777773
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=238.21 Aligned_cols=237 Identities=21% Similarity=0.350 Sum_probs=202.5
Q ss_pred EEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 110 QKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 110 ~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+|.+.| .++.+ ++ .+|++|+.||.|++||+.+. .....+.+|...|.+++|+ +. +|++|+.|
T Consensus 113 ~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~d 178 (445)
T 2ovr_B 113 VLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMR--DN-IIISGSTD 178 (445)
T ss_dssp EEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEE--TT-EEEEEETT
T ss_pred EecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEec--CC-EEEEEeCC
Confidence 345788875 55554 45 68999999999999999873 4467788999999999997 44 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
|+|++||+.+++ .+..+.+|...|.+++|+ +..+++++.||.|++||+++++.+..+..|...|.+++|
T Consensus 179 g~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-- 247 (445)
T 2ovr_B 179 RTLKVWNAETGE------CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-- 247 (445)
T ss_dssp SCEEEEETTTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--
T ss_pred CeEEEEECCcCc------EEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--
Confidence 999999998763 345667899999999996 467899999999999999999999899999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++. ++++|+.||.|++||+++... +..+..|...|.++.| ++. .+++++.||.|++||+++
T Consensus 248 ~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~-------------- 308 (445)
T 2ovr_B 248 DGR-RVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-------------- 308 (445)
T ss_dssp CSS-CEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT--------------
T ss_pred CCC-EEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCC--------------
Confidence 455 899999999999999998654 7888899999999999 454 699999999999999987
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
...+..+.+|...+.++.+++ . ++++++.||.|++||+.++.
T Consensus 309 ~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 309 GNCIHTLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp CCEEEEECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCCCc
Confidence 356677788999999998864 4 79999999999999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=226.52 Aligned_cols=260 Identities=13% Similarity=0.167 Sum_probs=202.9
Q ss_pred CceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEE-EEeecCCc
Q 015484 39 PSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIA-QKIRVDGE 117 (406)
Q Consensus 39 p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~ 117 (406)
+..+++|.|+. ..++.|.. ++.|.++++.-. . ...+.. ...+|.+.
T Consensus 13 ~v~~~~~~~~~------------~~l~~~~~-----dg~i~iw~~~~~-----------~-----~~~~~~~~~~~~~~~ 59 (351)
T 3f3f_A 13 LVHDVVYDFYG------------RHVATCSS-----DQHIKVFKLDKD-----------T-----SNWELSDSWRAHDSS 59 (351)
T ss_dssp CEEEEEECSSS------------SEEEEEET-----TSEEEEEEECSS-----------S-----CCEEEEEEEECCSSC
T ss_pred ceeEEEEcCCC------------CEEEEeeC-----CCeEEEEECCCC-----------C-----CcceecceeccCCCc
Confidence 68899998731 15566553 378989877622 0 123333 34469999
Q ss_pred eeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCCCeeEEEecCC--CCCeEEEecCCCeEE
Q 015484 118 VNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDKEGYGLSWSPF--KEGYLVSGSHDNKIC 192 (406)
Q Consensus 118 v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~ 192 (406)
|++++|+|. + .+|++|+.||.|++||+........ ....+...+.+|...|.+++|+|+ +. +|++++.||.|+
T Consensus 60 v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~ 137 (351)
T 3f3f_A 60 IVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILR 137 (351)
T ss_dssp EEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEE
T ss_pred EEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEE
Confidence 999999994 5 7899999999999999987432110 011336677889999999999998 77 999999999999
Q ss_pred EEeCCCccCCceeeeeee-------eeccCccEEEEEeeCC--CCCEEEEEecCCcEEEEECCCCcc--cccccccCCCe
Q 015484 193 LWDVSALAQDKVIDAMHV-------YEAHESVVEDVSWHLK--NENLFGSAGDDCQLMIWDLRTNQT--QQRVKAHEKEV 261 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~-------~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v 261 (406)
+||+.++.....+..... ...|...+.+++|+|. ++.++++++.++.+.+|+...++. +..+.+|...|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 999988765443321111 1256788999999995 488999999999998888877765 56667899999
Q ss_pred eEEEecCCCC---cEEEEEeCCCcEEEEeCCCCC---------------------------------------------C
Q 015484 262 NYLSFNPYNE---WVLATASSDTTVALFDMRKMT---------------------------------------------V 293 (406)
Q Consensus 262 ~~i~~~~~~~---~~l~~~~~dg~i~vwd~~~~~---------------------------------------------~ 293 (406)
++++|+|++. .+|++|+.||.|++||++... .
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccccc
Confidence 9999999982 399999999999999998642 2
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++..+.+|...|++++|+|+++ +|++++.||.|+|||+..
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred EEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCc
Confidence 3556778999999999999997 599999999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=232.19 Aligned_cols=218 Identities=17% Similarity=0.237 Sum_probs=181.3
Q ss_pred CCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec
Q 015484 157 DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 157 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
.....+.+|...|++++|+|++..+|++|+.||.|++||+.++.... .....+|...|.+++|+|.++.+|++++.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----FIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----EECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----eeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 33567789999999999999983499999999999999998764321 12224689999999999966789999999
Q ss_pred CCcEEEEECCCCccccccc---ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC
Q 015484 237 DCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
||.|++||++. ..+..+. .+...|.+++|+|++. +|++|+.||.|++||++ ..++..+..|...|.+++|+|+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSS
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCC
Confidence 99999999986 4444443 3457899999999998 99999999999999995 3458888999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+|++++.|+.|++||++..... ..++... +|...|.+++|+| ++. +|++++.|+.|++||+.++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCC
Confidence 9868999999999999999863221 2334444 6899999999999 988 6899999999999999876
Q ss_pred cc
Q 015484 393 IY 394 (406)
Q Consensus 393 ~~ 394 (406)
..
T Consensus 284 ~~ 285 (383)
T 3ei3_B 284 SK 285 (383)
T ss_dssp TS
T ss_pred cc
Confidence 54
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=232.86 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=161.4
Q ss_pred cCCceeEEEEcCCCCcE-EEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNL-VGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+...+.+++|+|+|..+ +|+++.|++|+|||+.+.. +...+ .|...|.+++|+|++. +|++++.+ .++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--------~~~~~-~~~~~V~~v~fspdg~-~l~s~s~~-~~~ 200 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--------EKFEI-ETRGEVKDLHFSTDGK-VVAYITGS-SLE 200 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--------EEEEE-ECSSCCCEEEECTTSS-EEEEECSS-CEE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--------EEEEe-CCCCceEEEEEccCCc-eEEeccce-eEE
Confidence 34568899999999543 2455579999999998742 24444 4778899999999998 99999855 566
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCcc----cccccccCCCeeEE
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQT----QQRVKAHEKEVNYL 264 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~i 264 (406)
+|+..++... .......|...|.+++|+| ++..+++++.|+ .+++|++..... ...+..|...|+++
T Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 275 (365)
T 4h5i_A 201 VISTVTGSCI----ARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM 275 (365)
T ss_dssp EEETTTCCEE----EEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE
T ss_pred EEEeccCcce----eeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE
Confidence 6666554321 1133456888999999999 678888888777 688899876643 23457788999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+|+++ +||+|+.|+.|+|||+++++. +.. +.+|...|++++|+|+++ +|++|+.|++|+|||+..
T Consensus 276 ~~Spdg~-~lasgs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 276 DVDMKGE-LAVLASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EECTTSC-EEEEEETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred EECCCCC-ceEEEcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence 9999999 999999999999999998765 555 578999999999999997 699999999999999965
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=217.42 Aligned_cols=242 Identities=19% Similarity=0.354 Sum_probs=194.3
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+++|+|++++ +||+|. |++|+|||+.++.. .....+.+|...|++++|+|+++ +|++|+.||+|++||++
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~------~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDI------LQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCE------EEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCE------EEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecC
Confidence 5789999875 677764 89999999987422 12334457888999999999998 99999999999999998
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+++ .+..+.+|...+.++.+. +.++++++.++.+++|+...... +..+.+|...+..+.+++.+. +|++
T Consensus 98 ~~~------~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s 167 (318)
T 4ggc_A 98 QQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLAS 167 (318)
T ss_dssp TTE------EEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred Cce------eEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEE
Confidence 864 345667888888877765 57899999999999999987654 556688999999999999998 9999
Q ss_pred EeCCCcEEEEeCCCCCC---CcEEecCCCCCeEEEEEcCCCCCEEE--EEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 277 ASSDTTVALFDMRKMTV---PLHILSSHTEEVFQVEWDPNHETVLA--SSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~i~~~p~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++.||.|++||+++.+. .......|.+.|..+.++|.+..++. +++.++.|++||.... .
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~--------------~- 232 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--------------A- 232 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC--------------C-
T ss_pred EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc--------------c-
Confidence 99999999999987542 35566778899999999999887654 5567899999998762 2
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEE-EeCCCcEEEEeCCCccc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISS-VADDNTVQVWQMTDSIY 394 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s-~~~dg~i~iw~~~~~~~ 394 (406)
......+...+..+.|+|.+..++++ ++.|+.|+|||+.++..
T Consensus 233 ~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 22233466789999999999854433 34799999999987743
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=225.64 Aligned_cols=215 Identities=14% Similarity=0.271 Sum_probs=186.8
Q ss_pred CCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 155 DCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 155 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
.......+.+|...|++++|+|++. +|++|+.||.|++||+.+++ .+..+..|...|.+++|+| ++++|+++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 92 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGE------RLGTLDGHTGTIWSIDVDC-FTKYCVTG 92 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCC------EEEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCch------hhhhhhhcCCcEEEEEEcC-CCCEEEEE
Confidence 3444567899999999999999988 99999999999999998764 2356678999999999999 78899999
Q ss_pred ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-----CcEEEEeCCCCCC----------CcEEec
Q 015484 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-----TTVALFDMRKMTV----------PLHILS 299 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~----------~~~~~~ 299 (406)
+.||.|++||+++++.+..+. +...+.+++|+|++. ++++++.+ |.|++||++.... ++..+.
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 93 SADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp ETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 999999999999999888777 888999999999999 88999888 9999999986542 455666
Q ss_pred CCCC--CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 300 SHTE--EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 300 ~h~~--~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.|.. .+.+++|+|+++ +|++++.||.|++||++.. ...+..+..|...|.+++|+|++. +|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 235 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLT-YFIT 235 (369)
T ss_dssp CCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred CCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCC-EEEE
Confidence 6776 999999999997 6999999999999999762 356677788999999999999999 6899
Q ss_pred EeCCCcEEEEeCCCccc
Q 015484 378 VADDNTVQVWQMTDSIY 394 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~~ 394 (406)
++.|+.|++||+.++..
T Consensus 236 ~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 236 SSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EETTSEEEEEETTTCCE
T ss_pred ecCCceEEEEECCCCce
Confidence 99999999999987643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=221.58 Aligned_cols=243 Identities=12% Similarity=0.108 Sum_probs=180.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceee-eCCCCCeeEEEecC--CCCCeEEEecCCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRL-KGHDKEGYGLSWSP--FKEGYLVSGSHDNK 190 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg~ 190 (406)
...|.++.|+|. +++++.|++|++|+......... ........+ .+|...|.+++|+| ++. +|++|+.||+
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~ 150 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGT 150 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCC
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCc
Confidence 467888889886 89999999999998875321110 011112233 36778999999999 888 9999999999
Q ss_pred EEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc-ccccc-cCCCeeEEEec
Q 015484 191 ICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ-QRVKA-HEKEVNYLSFN 267 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~i~~~ 267 (406)
|++||++++.. .... ..+...+.+++|+| ++.+|++|+.||.|++||+++++.+ ..+.. |...|++++|+
T Consensus 151 i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 151 IGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp EEEEESSSSCE------EEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred EEEEECCCCcE------EEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 99999987643 1222 23556799999999 7899999999999999999999887 67777 99999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeE--EEEEcCCCCCEEEEEeC-CCcEEEEeCCCCCccccc
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVF--QVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~--~i~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 341 (406)
|++. +|++++ ++.|++||+++... +..+. .|...+. +++|+|+++ +|++++. |+.|+||++......
T Consensus 224 ~~g~-~l~s~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~--- 296 (343)
T 3lrv_A 224 DNGY-WMVVEC-DQTVVCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKN--- 296 (343)
T ss_dssp TTSS-EEEEEE-SSBEEEEETTSSTT-CBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCS---
T ss_pred CCCC-EEEEEe-CCeEEEEEcCCCCc-ceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcccccc---
Confidence 9998 889988 55999999998764 33332 2444444 699999997 5888887 999999999753211
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCC---CCCcEEEEEeCCCcEEEEeCCCc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNK---NDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
... .++..++|.+ +.. .+++++.||.+.++-....
T Consensus 297 -----------~~~----~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 297 -----------WTK----DEESALCLQSDTADFT-DMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp -----------EEE----EEEEECCC----CCCC-EEEEEEETTEEEEEEECSS
T ss_pred -----------eEe----cCceeEecCccccccc-eeEEEecCCceEEEEecCC
Confidence 111 3577788888 777 5778888999988865443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=222.72 Aligned_cols=251 Identities=11% Similarity=0.094 Sum_probs=194.8
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEec
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGS 186 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~ 186 (406)
....+.+...+.+++|+|++..++++++.++.|++||+.+.. ....+..+. .+.+++|+|+++ +| ++++
T Consensus 24 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------~~~~~~~~~-~v~~~~~spdg~-~l~~~~~ 93 (391)
T 1l0q_A 24 VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------VIATVPAGS-SPQGVAVSPDGK-QVYVTNM 93 (391)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------EEEEEECSS-SEEEEEECTTSS-EEEEEET
T ss_pred EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------EEEEEECCC-CccceEECCCCC-EEEEEEC
Confidence 344566667799999999996666888899999999998732 244455444 899999999998 55 5666
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.++.|++||+.+++. ...+. +...+.+++|+|++..++++++.++.|++||+++++.+..+..+ ..+.+++|
T Consensus 94 ~~~~v~v~d~~~~~~------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 165 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTV------AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV 165 (391)
T ss_dssp TTTEEEEEETTTTEE------EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred CCCEEEEEECCCCeE------EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEE
Confidence 789999999987643 22233 34578999999954445578888999999999998887777644 45799999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCccccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+|+++.++++++.++.|++||+++... +..+. +...+.+++|+|+++. |++++ .++.|++||+..
T Consensus 166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~-l~~~~~~~~~~~v~~~d~~~--------- 233 (391)
T 1l0q_A 166 TPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTK-AYVTNVDKYFNTVSMIDTGT--------- 233 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSE-EEEEEECSSCCEEEEEETTT---------
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECCCCCE-EEEEecCcCCCcEEEEECCC---------
Confidence 999985557888899999999987643 44443 5678999999999985 55555 799999999986
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..+..|. .+.+++|+|++++++++++.|+.|++||+.++..
T Consensus 234 -----~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 234 -----NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp -----TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred -----CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 24445555554 4789999999997668889999999999987643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-27 Score=214.12 Aligned_cols=248 Identities=14% Similarity=0.165 Sum_probs=180.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+..+++.+.+..++++++.|++|+|||..+.. +...+. |...|.+++|+++ .++++ .|+.|++||+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--------~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~ 126 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--------DVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKF 126 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--------EEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEES
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--------EEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEEC
Confidence 588899999885555778889999999998742 244454 6678999999874 34444 4789999999
Q ss_pred CCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEE--EecCCcEEEEECCCCc----------------cccccccc
Q 015484 197 SAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS--AGDDCQLMIWDLRTNQ----------------TQQRVKAH 257 (406)
Q Consensus 197 ~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~ 257 (406)
.+. +.... +.. +...+++++ .+++. |+.||.|++||+++++ .+..+.+|
T Consensus 127 ~~~~~~~~~------~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 127 GNPWKRITD------DIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp STTCCBSSC------CEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred CCCceeeEE------ecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 886 33222 222 344456665 45555 5899999999999865 25677899
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCc-EEEEeCCCCCCCcEEec-C-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTT-VALFDMRKMTVPLHILS-S-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~-~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
...|++++|+|++. +|++|+.||+ |++||++++.. +..+. + |...|.+++|+|+++ +|++++.|+.|+|||++.
T Consensus 195 ~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 195 TNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSC
T ss_pred CCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccC
Confidence 99999999999998 9999999998 99999998765 67776 5 999999999999997 699999999999999976
Q ss_pred CCcccccc-cc------cCCCC-eeEEEe-cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 335 IGDEQLEL-DA------EDGPP-ELLFSH-GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 335 ~~~~~~~~-~~------~~~~~-~~~~~~-~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
........ .. ..... ...+.+ ..+......++|++++. .+++++.||.+++|++..+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 272 DQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEET
T ss_pred CCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCC
Confidence 43211100 00 00000 001111 12223457799999999 68899999999999987643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=243.93 Aligned_cols=215 Identities=20% Similarity=0.362 Sum_probs=181.7
Q ss_pred eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCC-CCEEEEEecCC
Q 015484 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKN-ENLFGSAGDDC 238 (406)
Q Consensus 160 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg 238 (406)
..+.+|.+.|++++|+|++. +|++|+.||.|++||+.... ......+.+|...|.+++|+|.. +.+|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTE----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCC----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 45789999999999999998 99999999999999987432 23456678899999999998732 78999999999
Q ss_pred cEEEEECCCCc--ccccccccCCCeeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCC
Q 015484 239 QLMIWDLRTNQ--TQQRVKAHEKEVNYLSFNPY--NEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 239 ~i~i~d~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~ 313 (406)
.|++||+++++ ....+..|...|++++|+|+ +. ++++|+.||.|++||++... .....+..|...|.+++|+|.
T Consensus 78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 99999999886 56667889999999999999 77 99999999999999999863 335667889999999999994
Q ss_pred -------------CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC---CCcEEEE
Q 015484 314 -------------HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN---DPWVISS 377 (406)
Q Consensus 314 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~~l~s 377 (406)
+. +|++|+.||.|++||++.... ...+...+.+|...|++++|+|+ +. ++++
T Consensus 157 ~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s 224 (753)
T 3jro_A 157 TIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ----------TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLAS 224 (753)
T ss_dssp C---------CGGGC-CEEEEETTSCEEEEEEETTTT----------EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEE
T ss_pred ccccccccccCCCCC-EEEEEECCCeEEEEeccCCcc----------cceeeeeecCCCCcEEEEEeccCCCCCC-EEEE
Confidence 65 699999999999999986321 12556677899999999999999 77 7999
Q ss_pred EeCCCcEEEEeCCCc
Q 015484 378 VADDNTVQVWQMTDS 392 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~ 392 (406)
++.||.|++|++.++
T Consensus 225 ~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDRTCIIWTQDNE 239 (753)
T ss_dssp EESSSCEEEEEESSS
T ss_pred EecCCEEEEecCCCC
Confidence 999999999999886
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=209.88 Aligned_cols=255 Identities=9% Similarity=0.096 Sum_probs=173.3
Q ss_pred CCeEEEEEeecCC-----ceeEEEEcCCC-Cc-EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---------
Q 015484 104 PKVEIAQKIRVDG-----EVNRARCMPQK-PN-LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK--------- 167 (406)
Q Consensus 104 ~~~~~~~~~~h~~-----~v~~i~~~p~~-~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~--------- 167 (406)
+.++++.++.-+. .+.++.|-..+ +. .+++++ ...|++|+..+.. +++..++...|..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~ 96 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAW-----QWEKLYTWHFAEVPVLQIVPVP 96 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSS-----BEEEEEEEECCSSCEEEECCCT
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCc-----cceeeEEEeccCceeEEEEEcC
Confidence 3466666665443 34555565543 12 455555 5679999998851 1233444444443
Q ss_pred ----------------CeeEEEecCC----CCCeEEEecC--------------------CCeEEEEeCCCccCCceeee
Q 015484 168 ----------------EGYGLSWSPF----KEGYLVSGSH--------------------DNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 168 ----------------~v~~l~~~~~----~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~ 207 (406)
.|.+++++|+ +. .+++++. |+.|++|++..... .
T Consensus 97 ~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~-----~ 170 (356)
T 2w18_A 97 DVYNLVCVALGNLEIREIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG-----G 170 (356)
T ss_dssp TCCSCEEEEECSSSEEEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC-----E
T ss_pred cccceeeeeeccccccceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc-----e
Confidence 4566777777 55 5666543 77777777744211 1
Q ss_pred eeeeeccCccEEEEEeeC--CCCCEEEEEecCCcEEEEECCCCcccccccccC---CCeeEEEecCCCCcEE--------
Q 015484 208 MHVYEAHESVVEDVSWHL--KNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE---KEVNYLSFNPYNEWVL-------- 274 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l-------- 274 (406)
+.....|...+..++|+| .++.+|++++.|++|+|||+++++.+.++.+|. ..+.+++|+|++. ++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~ 249 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCA 249 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCC
Confidence 234456777777788876 356899999999999999999999999887543 4677889999987 44
Q ss_pred ----EEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 275 ----ATASSDTTVALFDMRKMTVPLHIL-----SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 275 ----~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++|+.|++|++||..++.. +..+ .+|...+.+..++ +. ++++++.|++|+|||+.+
T Consensus 250 ~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t----------- 314 (356)
T 2w18_A 250 KESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL----------- 314 (356)
T ss_dssp --------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT-----------
T ss_pred cceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC-----------
Confidence 6788899999999987654 3333 4666666555555 54 799999999999999987
Q ss_pred CCCCeeEEEecCCCCCee-eEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 346 DGPPELLFSHGGHKAKIS-DFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~-~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+++..+.+|...+. .++|+|+|+ +|++|+.|++|+|||+.
T Consensus 315 ---Gk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 315 ---GQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp ---CSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEEC
T ss_pred ---CcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecCC
Confidence 467778888887666 589999999 69999999999999863
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=221.00 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=202.1
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
..++....+.+...+.+++|+| +..++++++.++.|++||+.+..... ..+...+.+|...|.+++|++++. +++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 185 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVR---LSPPEKYKKKLGFVETISIPEHNE-LWV 185 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEE---ECCCHHHHTTCCEEEEEEEGGGTE-EEE
T ss_pred CcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEee---ecCcccccccCCceeEEEEcCCCE-EEE
Confidence 3556677777777888999999 44788888899999999998743211 111114568899999999999887 999
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeE
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
+++.|+.|++||+.+++. ...+..|...+.+++|+|++..++++++.++.|++||+++++.+..+.. ...+.+
T Consensus 186 s~~~d~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~ 258 (433)
T 3bws_A 186 SQMQANAVHVFDLKTLAY------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG 258 (433)
T ss_dssp EEGGGTEEEEEETTTCCE------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE
T ss_pred EECCCCEEEEEECCCceE------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE
Confidence 999999999999987532 2445568889999999995555556777899999999999887777654 445899
Q ss_pred EEecCCCCcEEEEEe--------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 264 LSFNPYNEWVLATAS--------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 264 i~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++|+|++. .+++++ .||.|++||+++.+. +. ...|...+.+++|+|+++.++++++.|+.|++||+..
T Consensus 259 ~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~- 334 (433)
T 3bws_A 259 LLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKL-ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE- 334 (433)
T ss_dssp EEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEE-EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT-
T ss_pred EEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcE-Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC-
Confidence 99999998 677666 588999999987543 33 3345668999999999987788889999999999986
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---------------CCcEEEEeCCCccc
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---------------DNTVQVWQMTDSIY 394 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---------------dg~i~iw~~~~~~~ 394 (406)
...+.... +...+.+++|+|++++ +++++. ||.|++||+.++..
T Consensus 335 -------------~~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 335 -------------KKVQKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp -------------TEEEEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred -------------CcEEEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 23333333 5677999999999994 555554 57999999987643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=228.14 Aligned_cols=309 Identities=11% Similarity=0.072 Sum_probs=205.6
Q ss_pred CCCCceEEEEecCCCCCCCCCCCceeEEEEEeec--CCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEee
Q 015484 36 LEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTH--TSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIR 113 (406)
Q Consensus 36 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~--~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (406)
+.--..++.|.||....+++..+ ..-+ -|.. ...++++.+. .+.+.|++.. . .-+ .. ...-.....+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D-~TV~--d~~~~~~l~gh~~~v~--~V~FsPdg~~-~--~~~-~~-~~~~~~~~~~~ 83 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPD-ISIG--QPKYAKDINCNSKNLF--HVKEFPLEFE-N--KLD-FE-LAQQNGLLNSQ 83 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSS-EEEE--EECCCSCCSSBGGGTE--EEEEECCCCC-C--TTT-TS-CCCSSCSSTTS
T ss_pred hhccEEEEEECCCCCEEEEEcCC-ceee--cccccceecCCCccEE--EEEECCCCCc-c--eEE-EE-eCCCceEeecC
Confidence 34456789999987644121111 1111 1222 1245666666 5555445521 1 111 00 00111122336
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC-----CeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-----EGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...|.+++|+|+| ..||+++.||+|+||+.+. ....+. |.. .+.+++|||+|+ +|++|+.|
T Consensus 84 ~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~D 150 (588)
T 2j04_A 84 PVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNED 150 (588)
T ss_dssp CSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETT
T ss_pred CCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCC
Confidence 68899999999999 6899999999999999654 133344 554 599999999999 99999999
Q ss_pred CeEEEEeCCCccCCce-eeeeeee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---ccc-cccCC
Q 015484 189 NKICLWDVSALAQDKV-IDAMHVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ---QRV-KAHEK 259 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~-~~~~~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~~ 259 (406)
|+|++||+..+..... +-.+..+ .+|...|.+++|+| ++ +++++.|+.|++||+..+... ..+ .+|..
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9999999988642111 0112343 56778999999999 44 778899999999999887743 345 47888
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE--cCCCCCEEEEEeCCCcEEEEeCCCCC-
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW--DPNHETVLASSADDRRLMVWDLNRIG- 336 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~--~p~~~~~l~s~~~dg~i~iwd~~~~~- 336 (406)
.|.+++|+ +. .||+++ ++.|++||+..... .....+|...|..+.| +|++. .|++++.||+ ++|......
T Consensus 228 ~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d~~~~ 300 (588)
T 2j04_A 228 KITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLEDELHV 300 (588)
T ss_dssp CCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEE-EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESSSEEE
T ss_pred cEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeeccEEE
Confidence 99999999 55 888887 69999999987543 2333389999999999 99996 6999999999 999985311
Q ss_pred ----ccccccc----ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe
Q 015484 337 ----DEQLELD----AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 337 ----~~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
......+ .-......+..+. +...|.+++|+|+|+ ++|+++
T Consensus 301 spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~-~lA~~~ 349 (588)
T 2j04_A 301 TADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGY-SIAIVY 349 (588)
T ss_dssp ECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSS-EEEEEE
T ss_pred CCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCC-EEEEEE
Confidence 0000000 0000001111222 245699999999999 688775
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=224.47 Aligned_cols=280 Identities=14% Similarity=0.147 Sum_probs=182.0
Q ss_pred EeecCCceeEEEEc---CCCCcEEEEEeCCCeEEEEeCCCccccccCCCC-CceeeeCCCCCeeEEEec-----------
Q 015484 111 KIRVDGEVNRARCM---PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCD-PDLRLKGHDKEGYGLSWS----------- 175 (406)
Q Consensus 111 ~~~h~~~v~~i~~~---p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~----------- 175 (406)
.+.-+....++.|+ |+.+.++++|. ++.|.+|+............. .......+...+..+.|+
T Consensus 11 ~lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (393)
T 4gq1_A 11 QLPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHD 89 (393)
T ss_dssp ECCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---
T ss_pred EecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccC
Confidence 34445666777775 44556666654 777999986543221100000 000111233344444443
Q ss_pred ---------CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC-------CCCCEEEEEecCCc
Q 015484 176 ---------PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL-------KNENLFGSAGDDCQ 239 (406)
Q Consensus 176 ---------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-------~~~~~l~~~~~dg~ 239 (406)
+++. +|++|+.|++|++||+..+... ....+..+.+|...|++++|+| .++++|++++.|++
T Consensus 90 ~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 90 GDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETII-TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp -------CCEEEE-EEEEEETTSCEEEEEEETTEEE-EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred CCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccc-eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 3333 7999999999999999876432 1223455678999999999987 25789999999999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc------------------------
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL------------------------ 295 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------ 295 (406)
|++||++++..+..+..|...|.+++|+|++..+|++|+.||.|++||+++.....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 99999998888777888999999999999987689999999999999998764311
Q ss_pred EEecCCCCCeEEEEEc-CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC-----CCCeeEEEecCCCCCeeeEEeCC
Q 015484 296 HILSSHTEEVFQVEWD-PNHETVLASSADDRRLMVWDLNRIGDEQLELDAED-----GPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
....+|...+.++.|+ |++. .|++++.|+.+++||+.............. ...........+...+..+.+.+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ----CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 1124677889999987 6776 699999999999999976432211110000 00011122233333333333444
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+..++++|+.||.|+|||+.++..
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTC
T ss_pred CCCEEEEEECCCCEEEEEECCCCcE
Confidence 4554678888999999999988754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=217.43 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=190.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i 191 (406)
+|.+.|++++|+|++ .++++++.|+.|++||+... .....+..|...+.+++|+|++. .+ ++++.|+.|
T Consensus 167 ~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i 236 (433)
T 3bws_A 167 KKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTL--------AYKATVDLTGKWSKILLYDPIRD-LVYCSNWISEDI 236 (433)
T ss_dssp TTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTC--------CEEEEEECSSSSEEEEEEETTTT-EEEEEETTTTEE
T ss_pred ccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCc--------eEEEEEcCCCCCeeEEEEcCCCC-EEEEEecCCCcE
Confidence 578899999999988 78999999999999999873 33566778899999999999998 55 566689999
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe--------cCCcEEEEECCCCcccccccccCCCeeE
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG--------DDCQLMIWDLRTNQTQQRVKAHEKEVNY 263 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 263 (406)
++||+.++.. ...+.. ...+.+++|+| ++..+++++ .||.|++||+++++.+..+ .+...+.+
T Consensus 237 ~~~d~~~~~~------~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~ 307 (433)
T 3bws_A 237 SVIDRKTKLE------IRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRH 307 (433)
T ss_dssp EEEETTTTEE------EEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEE
T ss_pred EEEECCCCcE------EEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcce
Confidence 9999987542 222332 45689999999 566666766 4889999999988776655 35568899
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCcEE
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD---------------DRRLM 328 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---------------dg~i~ 328 (406)
++|+|+++.++++++.++.|++||+++.+. +..+. +...+.+++|+|+++. |++++. ||.|+
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEE
Confidence 999999986778889999999999987543 44444 6788999999999974 556554 57999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+||+.+ .+.+..+.. ...+.+++|+|+++++++++..|+.|++|++..
T Consensus 385 ~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 385 VIDTTT--------------DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTT--------------TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEECCC--------------CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999976 244444444 457999999999995444444599999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=215.88 Aligned_cols=217 Identities=21% Similarity=0.304 Sum_probs=168.1
Q ss_pred CCCceeeeCCCCCeeEEEecCCC---CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFK---EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
..+...+.+|...|++++|+|++ . +|++|+.||.|++||+.+... .....+..|...|.+++|+| ++.+|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~ 102 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHTGPVLDVCWSD-DGSKVF 102 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSC----EEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCc----eeEEEeccccCCEEEEEECc-CCCEEE
Confidence 45567788999999999999984 5 999999999999999987321 12255677999999999999 788999
Q ss_pred EEecCCcEEEEECCCCcccccccccCCCeeEEEe--cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC--------
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF--NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-------- 302 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-------- 302 (406)
+++.||.|++||+++++.+. +..|...|.+++| +|++. +|++++.||.|++||+++... +..+..|.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~ 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVI 179 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEE
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEec
Confidence 99999999999999887655 4568999999999 88887 899999999999999998654 44544432
Q ss_pred ---------------------------------CCeEEEEEcCCCC---CEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 303 ---------------------------------EEVFQVEWDPNHE---TVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 303 ---------------------------------~~v~~i~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
..+.++.+.+... ..+++++.||.|++||++.....
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-------- 251 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-------- 251 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--------
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--------
Confidence 2233333333322 12777888888888888763210
Q ss_pred CCCeeEEEecCCCC------------CeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 347 GPPELLFSHGGHKA------------KISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 347 ~~~~~~~~~~~h~~------------~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+..+.+|.. .|.+++|+|+++ +|++++.||.|++||+.++.
T Consensus 252 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 252 ---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp ---HHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE
T ss_pred ---ccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCc
Confidence 22334444544 799999999999 58999999999999999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=206.13 Aligned_cols=261 Identities=17% Similarity=0.188 Sum_probs=177.3
Q ss_pred hhhhhhcCh----hHhhhhhcCCCCCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCC
Q 015484 17 FTVWKKNTP----FLYDLIVSHPLEWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSES 92 (406)
Q Consensus 17 ~~~wk~~~~----~ly~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~ 92 (406)
.+.||.... .+|-+.++ +-|.+.+.++|+.... ..+.+|.-. .+. |..+.+.+++..+
T Consensus 65 v~lw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~---------~~~~~~~~~----~~~--v~sla~spd~~~~ 126 (356)
T 2w18_A 65 VSLWKALDAWQWEKLYTWHFA---EVPVLQIVPVPDVYNL---------VCVALGNLE----IRE--IRALFCSSDDESE 126 (356)
T ss_dssp EEEEEESSSSBEEEEEEEECC---SSCEEEECCCTTCCSC---------EEEEECSSS----EEE--EEEECC------C
T ss_pred EEEcccCCCccceeeEEEecc---CceeEEEEEcCcccce---------eeeeecccc----ccc--eEEEEECCCcccc
Confidence 356887776 33433333 3389999998864433 456666541 223 4466666543322
Q ss_pred CCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCccccccCCCCCceeeeCCCCCee
Q 015484 93 NVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGY 170 (406)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~ 170 (406)
. +....-+|...|..+ +.+ .++.+++ .|+.|++|++... .+....+.+|...+.
T Consensus 127 ~-------------~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~d-------G~~~~s~~~~~~~v~ 182 (356)
T 2w18_A 127 K-------------QVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAED-------GGGKENQFLMPPEET 182 (356)
T ss_dssp C-------------EEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTT-------SCEEEEEEECCCSSC
T ss_pred c-------------cEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCC-------CceeeeeccCCCcee
Confidence 2 122223455555554 555 5666643 5999999999652 333567788999999
Q ss_pred EEEecC---CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC---ccEEEEEeeCCCCCEE------------E
Q 015484 171 GLSWSP---FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE---SVVEDVSWHLKNENLF------------G 232 (406)
Q Consensus 171 ~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~p~~~~~l------------~ 232 (406)
.++|++ ++. +|++|+.|++|+|||+.+++.. ..+.+|. ..+.+++|+| ++.++ +
T Consensus 183 ~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l------~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 183 ILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLL------KKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEE------EEEECCC---CCCEEEEEEE-TTEEEEEEC---------
T ss_pred eEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEE------EEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceee
Confidence 999999 556 9999999999999999987542 4444433 3577778999 45554 6
Q ss_pred EEecCCcEEEEECCCCcccccc-----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE-
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF- 306 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~- 306 (406)
+|+.|++|++||..+++.+..+ .+|...+.+..++ +. ++++|+.|++|+|||+++++. +.++.+|...+.
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs 330 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWS 330 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSE-EEEECCC--CCCC
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEE
Confidence 7889999999999998876544 3455555444444 55 899999999999999998765 888988887655
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 307 QVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
.++|+|+++ +|++|+.|++|+|||+
T Consensus 331 ~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred EEEECCCCC-EEEEEECCCcEEEecC
Confidence 589999997 6999999999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=207.71 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=178.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.++++++.++.|++||+.+. +....+..|. .+.+++|+|+++.++++++.|+.|++||+.+++. +
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~--------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------~ 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN--------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------I 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------E
T ss_pred EEEEEcCCCCEEEEEECCCC--------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------E
Confidence 57899999999999999873 2245566554 5899999999983347888999999999987643 2
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
..+.. ...+.+++|+|++..++++++.++.|++||+.+++.+..+.. ...+.+++|+|+++.++++++.++.|++||+
T Consensus 68 ~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 68 ATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp EEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 33333 348999999995554556677789999999999888777664 4568999999999955578888999999999
Q ss_pred CCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 289 RKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 289 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
++.+. +..+..+ ..+.+++|+|+++.++++++.++.|++||++. ...+.... +...+.+++|+
T Consensus 146 ~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--------------~~~~~~~~-~~~~~~~~~~~ 208 (391)
T 1l0q_A 146 VTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------------NSVIDTVK-VEAAPSGIAVN 208 (391)
T ss_dssp TTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------------TEEEEEEE-CSSEEEEEEEC
T ss_pred CCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC--------------CeEEEEEe-cCCCccceEEC
Confidence 87654 5555554 56799999999987667888999999999986 23333333 45578999999
Q ss_pred CCCCcEEEEEe--CCCcEEEEeCCCcc
Q 015484 369 KNDPWVISSVA--DDNTVQVWQMTDSI 393 (406)
Q Consensus 369 ~~~~~~l~s~~--~dg~i~iw~~~~~~ 393 (406)
|+++++++++. .++.|++||+.++.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 99995444443 68999999998763
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-23 Score=190.55 Aligned_cols=295 Identities=9% Similarity=0.087 Sum_probs=201.7
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeC--CC
Q 015484 61 VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTS--SC 138 (406)
Q Consensus 61 ~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~--dg 138 (406)
.+++++|+++.. ....++++.+... ++++.......+...+..++|+|++. +++++.. ++
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~~----------------tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~ 63 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDTT----------------AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEG 63 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEETT----------------TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEE
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcCC----------------CCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCc
Confidence 367899998754 3467888877622 13455556677788899999999995 5555543 68
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeeec----
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEA---- 213 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---- 213 (406)
.|++|++.... ......+..+...+..++|+|+++ +|++++ .++.|.+|++....... .+..+..
T Consensus 64 ~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~---~~~~~~~~~~~ 133 (347)
T 3hfq_A 64 GIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALT---LTDTVQHSGHG 133 (347)
T ss_dssp EEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEE---EEEEEECCCCC
T ss_pred eEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCee---ecceeecCCCC
Confidence 99999996532 222344455677889999999998 777776 78999999996432211 1222211
Q ss_pred -----cCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-CCcccc--cccc-cCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 214 -----HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-TNQTQQ--RVKA-HEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 214 -----~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
....+.+++|+|++ +++++...++.|.+||+. +++... .+.. .......++|+|+|+.+++++..++.|.
T Consensus 134 p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~ 212 (347)
T 3hfq_A 134 PRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA 212 (347)
T ss_dssp SSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence 12348889999954 477777788999999998 443321 1111 2336778999999995555566788999
Q ss_pred EEeCCCCCCC---cEEecCCC------CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 285 LFDMRKMTVP---LHILSSHT------EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 285 vwd~~~~~~~---~~~~~~h~------~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
+|++...... +..+.... ..+..++|+|++++++++...++.|.+|++...+ ....+...
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-----------~~~~~~~~ 281 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-----------HLTLIQQI 281 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-----------CEEEEEEE
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-----------cEEEeEEE
Confidence 9998752111 22222222 3588999999998766777789999999987411 12444555
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEE--eCCCcccC
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVW--QMTDSIYR 395 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw--~~~~~~~~ 395 (406)
..+...+..++|+|+|++++++...++.|.+| +..++.+.
T Consensus 282 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 282 STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 55666789999999999655555556899999 55556544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-24 Score=197.45 Aligned_cols=246 Identities=10% Similarity=0.050 Sum_probs=182.7
Q ss_pred EEEeecCCceeEEEEcCC--------------CCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCC
Q 015484 109 AQKIRVDGEVNRARCMPQ--------------KPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE 168 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~--------------~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~ 168 (406)
....+|...+..+++.+. +. .++.++.+ +.|++||+... ....+.+|...
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~~~~~~ 180 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVHRSPQP 180 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTSC---------SCEEEEEESSC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCCC---------CCEEEeCCCCc
Confidence 345678888888887751 43 35444443 79999999752 24667789999
Q ss_pred eeEEEecCCCCCeEEEecCCC---eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE-EEecCCc--EEE
Q 015484 169 GYGLSWSPFKEGYLVSGSHDN---KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG-SAGDDCQ--LMI 242 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~--i~i 242 (406)
+.+++|+|+|+ .|++++.++ .|++||+.+++. ..+..|...+.+++|+|+ ++.|+ +++.++. |++
T Consensus 181 v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~-------~~l~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 181 LMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-------RQVASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-------EEEECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEE
T ss_pred ceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE-------EEeecCCCcccCEEEcCC-CCEEEEEEecCCCceEEE
Confidence 99999999998 999998875 999999987642 234457778999999994 55454 7766655 999
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
||+++++. ..+..+...+.+++|+|+++ .|++++. ++ .|.+||+.+.. ...+..+...+.+++|+|+++. |+
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~-l~ 326 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKF-MV 326 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSE-EE
T ss_pred EECCCCCE-EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCE-EE
Confidence 99988765 45666788899999999999 6666665 45 67777887654 4556667788999999999985 55
Q ss_pred EEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC---cEEEEeCCCcc
Q 015484 320 SSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN---TVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg---~i~iw~~~~~~ 393 (406)
+++.+ +.|.+||+.... . ..+..+. .+.+++|+|+|++ |++++.++ .|++|++..+.
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~--------------~-~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGG--------------V-QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEECSSCEEEEEEETTTCC--------------E-EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTSCC
T ss_pred EEECcCCceEEEEEECCCCC--------------E-EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCCCc
Confidence 55543 589999998621 1 2334443 7999999999994 66666665 79999998765
Q ss_pred cC
Q 015484 394 YR 395 (406)
Q Consensus 394 ~~ 395 (406)
..
T Consensus 390 ~~ 391 (415)
T 2hqs_A 390 KA 391 (415)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=200.54 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=159.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--------CCCCCceeeeCCCCCeeEEEecCCCCCeEE----
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ--------DDCDPDLRLKGHDKEGYGLSWSPFKEGYLV---- 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~---- 183 (406)
..++.+++++++ .++++++.++ ++||+......... ....+.. ...+...|.+++|+|++. +|+
T Consensus 37 ~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~-~lav~~~ 112 (434)
T 2oit_A 37 ERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGL-LVPMKFPIHHLALSCDNL-TLSACMM 112 (434)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCE-EECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred CCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccc-cccCCCcccEEEEcCCCC-EEEEEEe
Confidence 468999999988 5788888887 89987653211000 0011111 224667899999999998 888
Q ss_pred EecCCCeEEEEeCCCc-----cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 184 SGSHDNKICLWDVSAL-----AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
+|+.|+.|++||+.+. ...+.+..+..+.+|...|.+++|+|.++.+|++++.||.|++||++++........|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 8999999999998765 11122223455667899999999999668999999999999999999886665566688
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------CCCeEEEEEcCCCCCEEEEEeCCCc-----
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-------TEEVFQVEWDPNHETVLASSADDRR----- 326 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-------~~~v~~i~~~p~~~~~l~s~~~dg~----- 326 (406)
..|++++|+|++. +|++|+.||.|++||++ +.. ...+..| ...|.+++|++++..+++.++.||.
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 8999999999998 89999999999999998 232 3333333 3379999999988644444555543
Q ss_pred -EEEEeCCCC
Q 015484 327 -LMVWDLNRI 335 (406)
Q Consensus 327 -i~iwd~~~~ 335 (406)
+++|+++..
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 899999864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-23 Score=186.47 Aligned_cols=267 Identities=9% Similarity=0.147 Sum_probs=178.3
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC-CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS-CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.+.....+.|...+.+++|+|+++ +|++++.+ +.|.+|++.... +.......+..+. .+.+++|+|+++ +|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~s~dg~-~l~ 99 (343)
T 1ri6_A 27 ALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDD----GALTFAAESALPG-SLTHISTDHQGQ-FVF 99 (343)
T ss_dssp CEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTT----CCEEEEEEEECSS-CCSEEEECTTSS-EEE
T ss_pred cEEEeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCC----CceeeccccccCC-CCcEEEEcCCCC-EEE
Confidence 355566778999999999999995 45555554 999999997211 0112233444444 788999999998 665
Q ss_pred Ee-cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCC-Ccccc----ccc-
Q 015484 184 SG-SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRT-NQTQQ----RVK- 255 (406)
Q Consensus 184 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~- 255 (406)
++ ..++.|.+||+..+. .......+. ....+.+++|+|+ ++.+++++ .++.|.+||+.+ ++... .+.
T Consensus 100 ~~~~~~~~i~~~d~~~~~---~~~~~~~~~-~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 174 (343)
T 1ri6_A 100 VGSYNAGNVSVTRLEDGL---PVGVVDVVE-GLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 174 (343)
T ss_dssp EEETTTTEEEEEEEETTE---EEEEEEEEC-CCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred EEecCCCeEEEEECCCCc---ccccccccc-CCCCceEEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence 55 458999999996321 112223333 3346889999994 55555554 899999999987 54321 222
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEec---CC---CCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILS---SH---TEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~---~h---~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
.....+..++|+|+++.+++++..++.|.+||+......+ .... .. ...+..++|+|+++.+++++..++.
T Consensus 175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 2345788899999999555566688999999996422111 1121 11 2357789999999876667778999
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCccc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIY 394 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~ 394 (406)
|.+||+..... ....+.....+.. +.+++|+|+++++++++..++.|.+|++ .++.+
T Consensus 255 i~v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 255 ITVFSVSEDGS----------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEECTTSC----------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCC----------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 99999973111 1233334444444 8999999999965555447899999955 45543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=178.24 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=171.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccCCCCCceeeeCC-CCCeeEEEecCCCCCeEEEec
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK-QAEKQQDDCDPDLRLKGH-DKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~ 186 (406)
.....|.+.|.+++|+|++ .+|++++ ++.|++||+.. ... ......| ...+.+++|+|+++ +|++++
T Consensus 35 ~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~~~spdg~-~l~~~~ 103 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSP--------EKVDTGFATICNNDHGISPDGA-LYAISD 103 (297)
T ss_dssp EEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSC--------EECCCTTCCCBCSCCEECTTSS-EEEEEE
T ss_pred eeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCc--------eEeccccccccccceEECCCCC-EEEEEE
Confidence 4566789999999999999 5677765 78999999987 422 2333344 46789999999998 888887
Q ss_pred --CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC-CcccccccccCCCeeE
Q 015484 187 --HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT-NQTQQRVKAHEKEVNY 263 (406)
Q Consensus 187 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~ 263 (406)
.++...+|.++..... ...+.. ...+..++|+|++..++++++.++.+++|+++. ......+..+...+.+
T Consensus 104 ~~~~~~~~l~~~~~~~~~-----~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2ojh_A 104 KVEFGKSAIYLLPSTGGT-----PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDG 177 (297)
T ss_dssp CTTTSSCEEEEEETTCCC-----CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred eCCCCcceEEEEECCCCc-----eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcccc
Confidence 3345555555322111 122222 334888999995444555888999999998643 2334455567788999
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----------CcEEEEeC
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD-----------RRLMVWDL 332 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----------g~i~iwd~ 332 (406)
++|+|+++.+++++..++.+.+|++......+..+..|...+..++|+|+++. |++++.+ +.|.+||+
T Consensus 178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEec
Confidence 99999999444444468999999987444447778888888999999999985 6555544 56999998
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
.... ...+....+|...+..++|+|++++ |++++.+
T Consensus 257 ~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~ 292 (297)
T 2ojh_A 257 DGGN------------VETLFDLFGGQGTMNSPNWSPDGDE-FAYVRYF 292 (297)
T ss_dssp TSCS------------CEEEEEEEESTTTSCSCCBCTTSSE-EEEEEEC
T ss_pred CCCC------------ceeeeccCCCCcccccceECCCCCE-EEEEEec
Confidence 7622 2344455567888999999999995 4444443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-22 Score=184.27 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCC---eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE-E
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSC---EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV-S 184 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s 184 (406)
.....|.+.|.+++|+|++ ..||+++.++ .|++||+.+.. ...+..|...+.+++|+|+|+ .|+ +
T Consensus 172 ~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~---------~~~l~~~~~~~~~~~~spdg~-~la~~ 240 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---------VRQVASFPRHNGAPAFSPDGS-KLAFA 240 (415)
T ss_dssp EEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---------EEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred EEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc---------EEEeecCCCcccCEEEcCCCC-EEEEE
Confidence 3445789999999999999 5788888775 99999998732 245677888999999999998 666 7
Q ss_pred ecCCCe--EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CC--cEEEEECCCCcccccccccCC
Q 015484 185 GSHDNK--ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DC--QLMIWDLRTNQTQQRVKAHEK 259 (406)
Q Consensus 185 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~ 259 (406)
++.++. |.+||+.++.. ..+..|...+.+++|+| +++.|+.++. ++ .|.+||+.+++. ..+..+..
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~ 311 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS 311 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-------EECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS
T ss_pred EecCCCceEEEEECCCCCE-------EeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCC
Confidence 766654 99999987532 33456778899999999 5666666664 45 678889887764 34445667
Q ss_pred CeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---cEEEEeCC
Q 015484 260 EVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR---RLMVWDLN 333 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg---~i~iwd~~ 333 (406)
.+.+++|+|+|+ +|++++.+ ..|.+||+.+.. ...+..+. .+.+++|+|+++. |++++.++ .|.+||+.
T Consensus 312 ~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~--~~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 312 QNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--VQVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC--EEECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETT
T ss_pred cccCeEECCCCC-EEEEEECcCCceEEEEEECCCCC--EEEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECC
Confidence 889999999999 66666543 489999998755 34565554 8999999999984 66666665 79999987
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
. .....+.+|.+.|.+++|+|...
T Consensus 387 g---------------~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 387 G---------------RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp S---------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred C---------------CcEEEeeCCCCCCcCCccccccc
Confidence 5 44556678889999999999754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=175.25 Aligned_cols=251 Identities=8% Similarity=0.051 Sum_probs=176.1
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCC-ceeeeCCCCCeeEEEecCCCCCeEEEecCCC---
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDP-DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--- 189 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--- 189 (406)
+...+ .++|+|+++.+++++..++.|++||..+. .. ...+..+..+..+++|+|+++ +|+++..++
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~ 108 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--------PPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPF 108 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--------SCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSC
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--------ceeEEecccCCCCccceEECCCCC-EEEEecCCCCcc
Confidence 34556 99999999656666666899999999873 22 445556666666699999998 888665553
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc-EEEEECCCCcccc----cccccCCCeeEE
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ-LMIWDLRTNQTQQ----RVKAHEKEVNYL 264 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~----~~~~~~~~v~~i 264 (406)
.|.+||+.+++.. ..+. ......+++|+|++..++++...++. |.+|++.....+. ...........+
T Consensus 109 ~i~v~d~~~~~~~------~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 181 (331)
T 3u4y_A 109 NMQSYSFLKNKFI------STIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181 (331)
T ss_dssp EEEEEETTTTEEE------EEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEE
T ss_pred cEEEEECCCCCeE------EEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccce
Confidence 8999999876432 2222 34456899999965567777777788 9999987644321 111234567899
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
+|+|+++.+++++..++.|.+||+.+.+.. +..+. ....+..++|+|+++.++++...++.|.+||+.+...
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~----- 255 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL----- 255 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-----
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-----
Confidence 999999855666667889999999875531 34444 3467789999999986556666788999999976321
Q ss_pred cccCCCCeeEEEecCC----C---CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGGH----K---AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h----~---~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.....+ . .....++|+|+++++++++..++.|.+|++.+...
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 256 -------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp -------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred -------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 111111111 1 12356899999997667777778999999987654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=171.84 Aligned_cols=298 Identities=11% Similarity=0.060 Sum_probs=191.7
Q ss_pred eeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCC--
Q 015484 60 AVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSS-- 137 (406)
Q Consensus 60 ~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~d-- 137 (406)
..+++++|+++.. ....|+++.+... ++.+...... +...+..++|+|++ .+|++++.+
T Consensus 12 ~~~~~~vg~y~~~-~~~~i~~~~~d~~----------------~g~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~ 72 (361)
T 3scy_A 12 SELTMLVGTYTSG-NSKGIYTFRFNEE----------------TGESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSK 72 (361)
T ss_dssp GEEEEEEEECCSS-SCCEEEEEEEETT----------------TCCEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSS
T ss_pred CceEEEEEeccCC-CCCCEEEEEEeCC----------------CCCEEEeecc-cCCCCceEEECCCC-CEEEEEEccCC
Confidence 3578899999854 4577888877622 1345555555 78889999999999 466666664
Q ss_pred --CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeee--
Q 015484 138 --CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYE-- 212 (406)
Q Consensus 138 --g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-- 212 (406)
+.|.+|++..... ....+.....+......+++ +++ +|++++ .++.|.+|++........+.......
T Consensus 73 ~~~~v~~~~~~~~~g----~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 73 DQAAVSAFAFDKEKG----TLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp TTCEEEEEEEETTTT----EEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred CCCcEEEEEEeCCCC----cEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 7999999876311 11223344445566777888 566 555554 68899999997543222111111111
Q ss_pred ------ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc------c------cc-ccccCCCeeEEEecCCCCcE
Q 015484 213 ------AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------Q------QR-VKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 213 ------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~------~~-~~~~~~~v~~i~~~~~~~~~ 273 (406)
.+...+.+++|+|++..++++...++.|.+|++..... + .. ..........++|+|+++ +
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 224 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-F 224 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-E
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC-E
Confidence 11234688999995444556666689999999875442 1 11 122345678999999999 5
Q ss_pred EEEEe-CCCcEEEEeCCCCCC-CcEEe---cCCCCCeEEEEEcCCCCCEEEEEeC-CCcEEEEeCCCCCcccccccccCC
Q 015484 274 LATAS-SDTTVALFDMRKMTV-PLHIL---SSHTEEVFQVEWDPNHETVLASSAD-DRRLMVWDLNRIGDEQLELDAEDG 347 (406)
Q Consensus 274 l~~~~-~dg~i~vwd~~~~~~-~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 347 (406)
+++++ .++.|.+||+.++.. .+..+ ..+......++|+|++++++++... ++.|.+|++.... +
T Consensus 225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~----------g 294 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN----------G 294 (361)
T ss_dssp EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT----------C
T ss_pred EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC----------C
Confidence 55555 688999999985431 12222 2334567899999999864455555 6899999986311 1
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC--CCcccC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM--TDSIYR 395 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~~ 395 (406)
....+..... ...+.+++|+|+|++++++...++.|.+|++ .++.+.
T Consensus 295 ~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 295 TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 1223333333 4568899999999965555557899999654 456543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-21 Score=185.65 Aligned_cols=265 Identities=9% Similarity=0.103 Sum_probs=192.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeC--CCccccccCCCCCceeeeCCCCCeeEEEecC----CCCCeE
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDC--AKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP----FKEGYL 182 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l 182 (406)
...+.....+..++|+|++ .+|++++.+++|.+||+ .+ ......+. +...+..++|+| +|+ +|
T Consensus 172 ~~~i~~g~~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t--------~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l 240 (543)
T 1nir_A 172 VKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKE--------PTKVAEIK-IGIEARSVESSKFKGYEDR-YT 240 (543)
T ss_dssp EEEEECSTTEEEEEECTTS-CEEEEEETTSEEEEEETTSSS--------CEEEEEEE-CCSEEEEEEECCSTTCTTT-EE
T ss_pred EEEEecCcccceEEECCCC-CEEEEECCCCeEEEEECcCCC--------CcEEEEEe-cCCCcceEEeCCCcCCCCC-EE
Confidence 3344422238999999999 57888889999999999 44 22345555 455679999999 998 88
Q ss_pred EEecC-CCeEEEEeCCCccCCceeeeeee-e---eccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cc
Q 015484 183 VSGSH-DNKICLWDVSALAQDKVIDAMHV-Y---EAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RV 254 (406)
Q Consensus 183 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~---~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~ 254 (406)
++++. +++|.+||..+.+....+..... . ..|. ..+..+.++|+++.++++...++.|.+||+.+.+.+. .+
T Consensus 241 ~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 241 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred EEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 88774 89999999887654332221000 0 0022 3688999999778888888999999999998876544 33
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEe-CCCcEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSA-DDRRLMV 329 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~-~dg~i~i 329 (406)
. +...+..+.|+|+++++++++..+++|.+||..+++. +..+.. |.+....+ ++|++..+++++. .|++|.+
T Consensus 321 ~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 321 G-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp E-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred c-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence 3 4567888999999995556666788999999998654 555543 65544444 5787555778876 6899999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-------CCCcEEEEeCCCcccC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-------DDNTVQVWQMTDSIYR 395 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-------~dg~i~iw~~~~~~~~ 395 (406)
||+...+.. ....+++..+.+|...+..++++|++++ |++++ .++.|.+||+.+....
T Consensus 398 ~d~~~~~~~-------~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 398 IGTDPKNHP-------QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EECCTTTCT-------TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EEeCCCCCc-------hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999762211 1114677888888888999999999994 66665 2679999999987543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-21 Score=173.70 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=175.0
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CCeEEEEeCCCc
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DNKICLWDVSAL 199 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~ 199 (406)
..|.+++..++++++.++.|.+||..+.. ....+..+...+ +++|+|+++ ++++++. ++.|.+||+.++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~ 72 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE--------ILNQITLGYDFV-DTAITSDCS-NVVVTSDFCQTLVQIETQLE 72 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC--------EEEEEECCCCEE-EEEECSSSC-EEEEEESTTCEEEEEECSSS
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc--------eeeeEEccCCcc-eEEEcCCCC-EEEEEeCCCCeEEEEECCCC
Confidence 34666666778999999999999998742 244455556666 999999998 5555544 899999999876
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC---cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC---QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
... ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+++.++++
T Consensus 73 ~~~-----~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~ 145 (331)
T 3u4y_A 73 PPK-----VVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILI 145 (331)
T ss_dssp SCE-----EEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEE
T ss_pred cee-----EEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEE
Confidence 430 233344555555599999 566666555443 899999999887776653 4456899999999866677
Q ss_pred EeCCCc-EEEEeCCCCCCCc---EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 277 ASSDTT-VALFDMRKMTVPL---HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 277 ~~~dg~-i~vwd~~~~~~~~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
...++. |.+|++....... .........+..++|+|+++.+++++..++.|.+||+..... ...+
T Consensus 146 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----------~~~~ 214 (331)
T 3u4y_A 146 DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----------ITLL 214 (331)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----------CEEE
T ss_pred ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----------ccee
Confidence 677788 9999998644311 122234456899999999987677777899999999976321 0113
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+.. ...+..++|+|+|++++++...++.|.+||+.++..
T Consensus 215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 33333 356789999999997666666688899999998765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-21 Score=174.26 Aligned_cols=251 Identities=10% Similarity=0.081 Sum_probs=180.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeC------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTS------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
.......+..++|+|+++.++++... ++.|.+||..+.. ....+.. ...+.+++|+|+++..+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~-~~~~~~~~~s~dg~~l~v~ 106 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--------VTQAIHN-DLKPFGATINNTTQTLWFG 106 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--------EEEEEEE-SSCCCSEEEETTTTEEEEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--------EEEEEec-CCCcceEEECCCCCEEEEE
Confidence 34556778999999998554444433 6789999998732 2333332 3457789999998845556
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccC---------ccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCCCcccccc
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHE---------SVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 254 (406)
+..++.|.+||+.+++... .+..+. ..+.+++|+|++..++++. +.++.|.+||+.+++.+..+
T Consensus 107 ~~~~~~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGEVKG------RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp ETTTTEEEEEETTTCCEEE------EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ecCCCEEEEEeCCCCeeEE------EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 6668999999998865322 222221 1278899999544445444 35889999999998887777
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC----CCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS----HTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
..+...+.+++|+|+++ .+++++.++.|.+||+.+.+. +..+.. +...+..++|+|+++.++++...++.|.+|
T Consensus 181 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp CCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred cCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 65566688999999999 788888899999999988654 444433 456788999999998766666667999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|+.+. +.+....... ...++|+|++++++++...++.|.+||+.++..
T Consensus 259 d~~~~--------------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 259 DTRNG--------------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp ETTTC--------------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCCC--------------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 99762 2222222222 367999999997677776899999999987654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=172.45 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=164.9
Q ss_pred EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCC-ccCCceeeeeeee
Q 015484 133 TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA-LAQDKVIDAMHVY 211 (406)
Q Consensus 133 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 211 (406)
.++.++.|++||+.... ...+..|...+.+++|+|+++ +|++++ ++.|.+||+.+ +... ...
T Consensus 17 ~~~~~~~i~~~d~~~~~---------~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~------~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK---------MRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPE------KVD 79 (297)
T ss_dssp -CCCCEEEEEEETTTTE---------EEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCE------ECC
T ss_pred CCCcceeEEEEeCCCCc---------eeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCce------Eec
Confidence 44678999999998732 234566888999999999998 888876 78999999987 5431 222
Q ss_pred ecc-CccEEEEEeeCCCCCEEEEEe--cCCcEEE--EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 212 EAH-ESVVEDVSWHLKNENLFGSAG--DDCQLMI--WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 212 ~~~-~~~i~~i~~~p~~~~~l~~~~--~dg~i~i--~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
..+ ...+.+++|+| +++.+++++ .++...+ +++.++. ...+.. ...+..++|+|+++.++++++.++.+.+|
T Consensus 80 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 80 TGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred cccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEE
Confidence 233 36789999999 677777777 3344444 4555444 333332 33488999999999555588889999999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEE
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS 366 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 366 (406)
+++........+..+...+.+++|+|+++.+++++..++.+.||++.... .....+..|...+..++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~ 223 (297)
T 2ojh_A 157 SMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------SSVERITDSAYGDWFPH 223 (297)
T ss_dssp EEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------SCEEECCCCSEEEEEEE
T ss_pred EEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------CCcEEEecCCcccCCeE
Confidence 97543444667778888999999999998655555569999999986311 22344456667789999
Q ss_pred eCCCCCcEEEEEeCC-----------CcEEEEeCCCccc
Q 015484 367 WNKNDPWVISSVADD-----------NTVQVWQMTDSIY 394 (406)
Q Consensus 367 ~s~~~~~~l~s~~~d-----------g~i~iw~~~~~~~ 394 (406)
|+|++++ |+.++.+ +.|.+|++.++..
T Consensus 224 ~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 224 PSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999995 5555544 5699999988754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=185.82 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=152.2
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC--------Cceee-eeeeeeccCccEEEEEeeCCCCCEEE----E
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ--------DKVID-AMHVYEAHESVVEDVSWHLKNENLFG----S 233 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~-~~~~~~~~~~~i~~i~~~p~~~~~l~----~ 233 (406)
..+..+++++.+. ++++++.++ +++|+...... ..... .......+...|.+++|+| ++++|+ +
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEec
Confidence 4578999999887 999998888 88887643111 00000 0001123566899999999 567777 7
Q ss_pred EecCCcEEEEECCCC--------cc---cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC
Q 015484 234 AGDDCQLMIWDLRTN--------QT---QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT 302 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 302 (406)
++.|+.|++||++++ +. ...+.+|...|.+++|+|++..+|++++.||.|++||+++... +.....|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCC
Confidence 888999999998765 21 2344668999999999998544999999999999999998643 44566788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
..|.+++|+|+++ +|++|+.||.|++||++. .. ...... +.. ....|...|.+++|++++.++++.++.||
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~-~~-~~~~~~---~~~---~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTL-QE-KKVIPC---PPF---YESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTTC-CE-EEEECC---CTT---CCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccCC-cc-cccccC---Ccc---cCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 9999999999997 599999999999999872 11 100000 000 00123447999999998885555555554
Q ss_pred c------EEEEeCCCc
Q 015484 383 T------VQVWQMTDS 392 (406)
Q Consensus 383 ~------i~iw~~~~~ 392 (406)
. +++|++...
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3 899999865
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=183.78 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=176.7
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC--CCc
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV--SAL 199 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~--~~~ 199 (406)
.++|++ .++++++.+++|.+||..+. +....+..+.. +.+++|+|+++ +|++++.|++|.+||+ .++
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSC
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCC
Confidence 378877 78999999999999999873 33556663333 88999999999 9999999999999999 553
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeC----CCCCEEEEEe-cCCcEEEEECCCCccccccccc-----------CCCeeE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHL----KNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAH-----------EKEVNY 263 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p----~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~ 263 (406)
+ .+..+. +...+..++|+| ++ +++++++ .++.|.+||..+++.+..+..+ ...+.+
T Consensus 213 ~------~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 213 T------KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp E------EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred c------EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 2 223344 355689999998 65 4455555 6899999999999887776431 236889
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+.++|++..++++...++.|.+||+...+........+...+.++.|+|+++++++++..+++|.+||+.+
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t--------- 355 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD--------- 355 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---------
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---------
Confidence 99999988788888889999999998765433222245677889999999987677777799999999987
Q ss_pred ccCCCCeeEEEecC----CCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 015484 344 AEDGPPELLFSHGG----HKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTD 391 (406)
Q Consensus 344 ~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~ 391 (406)
.+++..+.. |......+ ++|++..+++++. .|+.|.+|++.+
T Consensus 356 -----g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 356 -----RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp -----TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred -----CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 233433332 44333333 4677444777775 689999999987
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=172.14 Aligned_cols=240 Identities=10% Similarity=0.113 Sum_probs=161.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-CeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-NKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~ 207 (406)
.++++++.++.|++|++.... ... ......|...+.+++|+|+++ +|++++.+ +.|.+|++.... ..+..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~--~~~~~ 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEG-----ALT-LTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDD--GALTF 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-----CEE-EEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTT--CCEEE
T ss_pred EEEEeCCCCCeEEEEEECCCC-----cEE-EeeeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCC--Cceee
Confidence 456666889999999996411 111 122234677889999999998 77777776 999999997211 11222
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC---CCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcE
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR---TNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTV 283 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i 283 (406)
+..+..+. .+..++|+|++..+++++..++.|.+||+. ..+....+. ....+.+++|+|+++ .+++++ .++.|
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v 153 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRI 153 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEE
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEE
Confidence 23333333 788999999544444555568999999994 333334443 334588999999998 555555 88999
Q ss_pred EEEeCCCCCCCcE----Eec-CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec--
Q 015484 284 ALFDMRKMTVPLH----ILS-SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-- 356 (406)
Q Consensus 284 ~vwd~~~~~~~~~----~~~-~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 356 (406)
.+||+........ ... .....+..++|+|+++.+++++..++.|.+|++...... ........
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~----------~~~~~~~~~~ 223 (343)
T 1ri6_A 154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN----------IECVQTLDMM 223 (343)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC----------CEEEEEEECS
T ss_pred EEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------EEEEeecccc
Confidence 9999986332111 222 234578899999999866666668999999999642111 11111111
Q ss_pred --C--CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 357 --G--HKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 357 --~--h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+ ....+..++|+|+++++++++..++.|.+|++.
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 1 123567899999999766677789999999998
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=193.22 Aligned_cols=241 Identities=11% Similarity=0.135 Sum_probs=171.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeC-CC-----eEEEEeCCCccccccCCCCCceeeeCCC----------------------
Q 015484 115 DGEVNRARCMPQKPNLVGTKTS-SC-----EVYVFDCAKQAEKQQDDCDPDLRLKGHD---------------------- 166 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~h~---------------------- 166 (406)
...+..++|+|+| ..|++++. ++ .|++||+.+... ...+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQT--------RLLVDSKVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCE--------EEEECGGGTC--------------------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCce--------eEccchhhcccccccccchhhhhhhhhhhc
Confidence 4569999999999 57888877 88 899999987432 22222221
Q ss_pred --CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 167 --KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 167 --~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
..+.+++|+|+|+ +|++++. +.|.+||+.++... . ...+..+...+.+++|+| +++.|+.++ ++.|++||
T Consensus 107 ~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~-~---~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 107 AMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKA-A---VRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTT-S---CCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred cccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcc-e---EEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEe
Confidence 2378999999998 8888876 99999999876200 0 122345677899999999 677777766 56899999
Q ss_pred CCCCcccccccccCCC----------------eeEEEecCCCCcEEEEEeCCC---------------------------
Q 015484 245 LRTNQTQQRVKAHEKE----------------VNYLSFNPYNEWVLATASSDT--------------------------- 281 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~~l~~~~~dg--------------------------- 281 (406)
+.+++.......+... +.+++|+|+|+ .|++++.|+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9987655443333222 47899999999 677766554
Q ss_pred ------cEEEEeCCC-CCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEe----CCCcEEEEeCCCCCcccccccccCCC
Q 015484 282 ------TVALFDMRK-MTVPLHILS--SHTEEVFQVEWDPNHETVLASSA----DDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 282 ------~i~vwd~~~-~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
.|.+||+.+ .+. ..... .|...+..++| |+++.+++++. .+..|.+||+.+..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------------ 323 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------------ 323 (741)
T ss_dssp SCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------------
T ss_pred CCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------------
Confidence 788999987 553 32222 46778999999 99986443333 35789999998632
Q ss_pred CeeEEEecCCCC----CeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 349 PELLFSHGGHKA----KISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 349 ~~~~~~~~~h~~----~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.......+.. .+..++|+|+|+ ++++++.||.++||.++
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID 366 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence 1122222222 457899999999 78899999988888765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=163.97 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=173.7
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---------CeeEEEecCCC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---------EGYGLSWSPFK 178 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~ 178 (406)
....+.....+..++|+|++..++++...++.|.+||..+... ...+..+.. .+.+++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 152 (353)
T 3vgz_A 81 VTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV--------KGRLVLDDRKRTEEVRPLQPRELVADDAT 152 (353)
T ss_dssp EEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE--------EEEEESCCCCCCSSCCCCEEEEEEEETTT
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee--------EEEEecCCCccccccCCCCCceEEECCCC
Confidence 3445556667899999999966777777789999999987422 334443322 26889999999
Q ss_pred CCeEEEec--CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 179 EGYLVSGS--HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 179 ~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
+ ++++++ .++.|.+||+.+++.. ..+..+...+.+++|+| +++.+++++.++.|.+||+.+++....+..
T Consensus 153 ~-~l~~~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 153 N-TVYISGIGKESVIWVVDGGNIKLK------TAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp T-EEEEEEESSSCEEEEEETTTTEEE------EEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred C-EEEEEecCCCceEEEEcCCCCceE------EEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 8 666554 5889999999876432 33333455688899999 567777888899999999999887766643
Q ss_pred ----cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 257 ----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 257 ----~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
+...+..++|+|+++.++++...++.|.+||+.+++. +..+.... ...++|+|+++.++++...++.|.+||.
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 4556788999999995555555568999999988654 45554433 2579999999876667768999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
.+ .+.+..+.. ...+.+++|+|++++++++...
T Consensus 302 ~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 302 KS--------------YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TT--------------TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred CC--------------CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 76 233333333 2368899999999965555543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-21 Score=188.81 Aligned_cols=246 Identities=9% Similarity=0.024 Sum_probs=162.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 117 EVNRARCMPQKPNLVGTKTSS---------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.|.+++|+|++ .+||+++.+ +.|++||+.+... ..+....+|...+..++|||+|+ .|+.++.
T Consensus 62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~-~la~~~~ 133 (723)
T 1xfd_A 62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE 133 (723)
T ss_dssp TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTT-CEEEEET
T ss_pred ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCC-EEEEEEC
Confidence 49999999999 567777664 7899999987421 11222234555688999999998 8888875
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCc------------------cEEEEEeeCCCCCEEEEEecCC-----------
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHES------------------VVEDVSWHLKNENLFGSAGDDC----------- 238 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~i~~i~~~p~~~~~l~~~~~dg----------- 238 (406)
+.|++||+.++.... ....+.. .+.+++|+| +++.|+.++.++
T Consensus 134 -~~i~~~~~~~g~~~~------~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~ 205 (723)
T 1xfd_A 134 -NNIYYCAHVGKQAIR------VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTY 205 (723)
T ss_dssp -TEEEEESSSSSCCEE------EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCC
T ss_pred -CeEEEEECCCCceEE------EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeecc
Confidence 799999998764321 1112222 237899999 567777766443
Q ss_pred -----------------------cEEEEECCCCccccccccc------CCCeeEEEecCCCCcEEEEEeC----CCcEEE
Q 015484 239 -----------------------QLMIWDLRTNQTQQRVKAH------EKEVNYLSFNPYNEWVLATASS----DTTVAL 285 (406)
Q Consensus 239 -----------------------~i~i~d~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~~~~~----dg~i~v 285 (406)
.|++||+.+++....+..+ ...+.+++|+|+|+ ++++... +..|++
T Consensus 206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEE
T ss_pred CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEE
Confidence 7999999988764555433 56789999999998 6655543 357999
Q ss_pred EeCCCCCCCcEEec-CCCCCe----EEEEEcCCCCCEEEE-EeCCC------cEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 286 FDMRKMTVPLHILS-SHTEEV----FQVEWDPNHETVLAS-SADDR------RLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 286 wd~~~~~~~~~~~~-~h~~~v----~~i~~~p~~~~~l~s-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
||+.++.. ...+. .+...+ ..++|+|+|+.+++. +..++ .|.+||+...+.. ....
T Consensus 285 ~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~ 352 (723)
T 1xfd_A 285 CDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-----------DNIQ 352 (723)
T ss_dssp EETTTCCE-EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-----------CCCC
T ss_pred EeCCCCcc-eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-----------ccee
Confidence 99987653 33332 233443 378999999975554 56777 5666763221110 0001
Q ss_pred EecCCCCCeee-EEeCCCCCcEEEEEeCC--CcEEEEeCCC
Q 015484 354 SHGGHKAKISD-FSWNKNDPWVISSVADD--NTVQVWQMTD 391 (406)
Q Consensus 354 ~~~~h~~~v~~-~~~s~~~~~~l~s~~~d--g~i~iw~~~~ 391 (406)
.+..+...+.. ++|+|+|+++++++..+ +.++||++..
T Consensus 353 ~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11122233444 69999999655555555 7899999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=166.79 Aligned_cols=248 Identities=11% Similarity=0.055 Sum_probs=172.6
Q ss_pred EEEEeecCC---ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-C----CCCeeEEEecCCCC
Q 015484 108 IAQKIRVDG---EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-H----DKEGYGLSWSPFKE 179 (406)
Q Consensus 108 ~~~~~~h~~---~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~~~~~~ 179 (406)
....+.+.. .+..++|+|++..+++++..++.|.+||+.+... ...+.. + ...+.+++|+|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~ 94 (337)
T 1pby_B 23 VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--------LGRIDLSTPEERVKSLFGAALSPDGK 94 (337)
T ss_dssp EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------EEEEECCBTTEEEECTTCEEECTTSS
T ss_pred EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe--------EeeEEcCCcccccccccceEECCCCC
Confidence 344455554 6899999999976677777889999999987422 223332 1 22577899999998
Q ss_pred CeEEEec------------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 180 GYLVSGS------------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 180 ~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
+|++++ .++.|.+||+.+++.. ..+. ....+.+++|+|+ ++.++++ ++.|.+||+.+
T Consensus 95 -~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~-~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 95 -TLAIYESPVRLELTHFEVQPTRVALYDAETLSRR------KAFE-APRQITMLAWARD-GSKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp -EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE------EEEE-CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTT
T ss_pred -EEEEEecccccccccccccCceEEEEECCCCcEE------EEEe-CCCCcceeEECCC-CCEEEEe--CCeEEEEECCC
Confidence 777775 5799999999875321 2222 2445788999994 5545455 68899999999
Q ss_pred CcccccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------cEEEEeCCCCCCCcEEecCCCCC
Q 015484 248 NQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-----------------------TVALFDMRKMTVPLHILSSHTEE 304 (406)
Q Consensus 248 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----------------------~i~vwd~~~~~~~~~~~~~h~~~ 304 (406)
++....+..+.. ...+.|+|++..+++++..++ .|.+||+.+.+.....+..+...
T Consensus 164 ~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 164 GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 887665543321 112378998884444333333 36899998866433344556678
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
+.+++|+|+++. ++++ ++.|.+||+.+ .+.+..... ...+.+++|+|++++ |++++.++.|
T Consensus 243 ~~~~~~s~dg~~-l~~~--~~~v~~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i 303 (337)
T 1pby_B 243 YFSTAVNPAKTR-AFGA--YNVLESFDLEK--------------NASIKRVPL-PHSYYSVNVSTDGST-VWLGGALGDL 303 (337)
T ss_dssp EEEEEECTTSSE-EEEE--ESEEEEEETTT--------------TEEEEEEEC-SSCCCEEEECTTSCE-EEEESBSSEE
T ss_pred eeeEEECCCCCE-EEEe--CCeEEEEECCC--------------CcCcceecC-CCceeeEEECCCCCE-EEEEcCCCcE
Confidence 899999999985 5555 79999999976 233333332 245789999999994 6666889999
Q ss_pred EEEeCCCccc
Q 015484 385 QVWQMTDSIY 394 (406)
Q Consensus 385 ~iw~~~~~~~ 394 (406)
++||+.++..
T Consensus 304 ~v~d~~~~~~ 313 (337)
T 1pby_B 304 AAYDAETLEK 313 (337)
T ss_dssp EEEETTTCCE
T ss_pred EEEECcCCcE
Confidence 9999988753
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-20 Score=184.50 Aligned_cols=252 Identities=14% Similarity=0.158 Sum_probs=176.4
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----ccccccCCCCCceeeeCCCC--------------Ce
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAK-----QAEKQQDDCDPDLRLKGHDK--------------EG 169 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~h~~--------------~v 169 (406)
.....+.+.+.+++|+|++ ..||++ .++.|++|++.+ .... .....+.. .+
T Consensus 114 ~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~--------~~~~~~~~~~~~g~~~~~ee~~~~ 183 (706)
T 2z3z_A 114 TYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAI--------AVTIDGTETLVYGQAVHQREFGIE 183 (706)
T ss_dssp EEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCE--------ESCSCCBTTEEESSCCGGGCTTCC
T ss_pred EEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcE--------EeccCCCCCeEcccchhhhhcCCC
Confidence 4455677889999999999 467764 679999999986 3221 11112222 25
Q ss_pred eEEEecCCCCCeEEEec---------------------------------CCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 170 YGLSWSPFKEGYLVSGS---------------------------------HDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
.+++|+|+|+ +|++++ .+..|.+||+.++... .+.....+..
T Consensus 184 ~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~ 258 (706)
T 2z3z_A 184 KGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTGEPKEK 258 (706)
T ss_dssp CSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCCSCTTC
T ss_pred ceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccCCCCce
Confidence 8999999999 888887 4468999999875421 1111124667
Q ss_pred cEEEEEeeCCCCCEEEEEecCC-----cEEEEECCCCccccccc--ccCC---CeeEEEecC--CCCcEEEEEeCCCcEE
Q 015484 217 VVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRTNQTQQRVK--AHEK---EVNYLSFNP--YNEWVLATASSDTTVA 284 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~v~~i~~~~--~~~~~l~~~~~dg~i~ 284 (406)
.+.+++|+| +++.+++++.++ .|++||+.+++....+. .+.. .+.+++|+| +++ ++++++.++.++
T Consensus 259 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~ 336 (706)
T 2z3z_A 259 FLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNH 336 (706)
T ss_dssp EEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCE
T ss_pred eEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccE
Confidence 899999999 677777776665 89999999884333331 1222 246789999 998 888999999999
Q ss_pred EEeCCCCCCCcEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 285 LFDMRKMTVPLHILSSHTEEVFQ-VEWDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 285 vwd~~~~~~~~~~~~~h~~~v~~-i~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
+|++......+..+..|...+.. ++|+|+++.++++++.++ .|..||+.... ...+ .|.
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------~~~l-~~~ 400 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------TKDL-TPE 400 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------CEES-CCS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------ceec-cCC
Confidence 99876333346777778888887 799999987666666665 56666665411 1111 245
Q ss_pred CCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCcc
Q 015484 360 AKISDFSWNKNDPWVISSVADD---NTVQVWQMTDSI 393 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~~ 393 (406)
..+.+++|+|+|++++++++.+ +.|++|++.++.
T Consensus 401 ~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 401 SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6689999999999655554544 569999998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=184.57 Aligned_cols=241 Identities=9% Similarity=0.056 Sum_probs=172.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|++ ..|++++. +.|++||+..... .....+..|...+.+++|+|+|+ +|+.++ ++.|.+||
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWVID 178 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEEEE
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEEEe
Confidence 458999999999 56777665 8999999987310 01344667778899999999998 888886 56999999
Q ss_pred CCCccCCceeeeeeeeeccCc----------------cEEEEEeeCCCCCEEEEEecCC---------------------
Q 015484 196 VSALAQDKVIDAMHVYEAHES----------------VVEDVSWHLKNENLFGSAGDDC--------------------- 238 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~p~~~~~l~~~~~dg--------------------- 238 (406)
+.++... .....+.. .+..++|+| +++.|++++.|+
T Consensus 179 ~~~g~~~------~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 179 LASGRQM------QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TTTTEEE------ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred cCCCCEE------EeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 9875321 11111121 147899999 566666666554
Q ss_pred ------------cEEEEECCC-Cccccccc--ccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCCCCCCcEEe
Q 015484 239 ------------QLMIWDLRT-NQTQQRVK--AHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 239 ------------~i~i~d~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~ 298 (406)
.|.+||+.+ ++...... .+...+.+++| |+|+ .|++++. +..|++||+.++.. ...+
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~ 328 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLASNQQ-RVLA 328 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETTTCCE-EEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECCCCce-EEEE
Confidence 789999988 76543332 36778999999 9999 5655443 46899999988654 3344
Q ss_pred cCCCC----CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE-EeCCCCCc
Q 015484 299 SSHTE----EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF-SWNKNDPW 373 (406)
Q Consensus 299 ~~h~~----~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~ 373 (406)
..+.. .+..++|+|+++ ++++++.||.+.||.+...+ . ...+..|...|..+ .|+|+++.
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~-------------~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG-------------K-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-------------C-EEESCCSSSCEEEEEEEETTTTE
T ss_pred EcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-------------C-eeeeeecceEEEeEeEEeCCCCE
Confidence 33332 456889999998 78999999988888775311 2 34455667778887 59999996
Q ss_pred EEEEEeCCC--cEEEEeCCC
Q 015484 374 VISSVADDN--TVQVWQMTD 391 (406)
Q Consensus 374 ~l~s~~~dg--~i~iw~~~~ 391 (406)
++++++.++ .++||++..
T Consensus 394 l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSCTTCBEEEEEET
T ss_pred EEEEEeCCCCceEEEEEEEc
Confidence 666777666 899999853
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=183.10 Aligned_cols=233 Identities=9% Similarity=0.038 Sum_probs=169.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecC---CC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSH---DN 189 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~---dg 189 (406)
..+|++++|+|+|. .||+++. +|++.||++.... ...+..|. ..+.+++|+|+ + ++++++. +.
T Consensus 21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~---------~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~ 88 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGE---------TVKLNREPINSVLDPHYGVG-R-VILVRDVSKGAE 88 (582)
T ss_dssp HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTE---------EEECCSSCCSEECEECTTCS-E-EEEEEECSTTSC
T ss_pred ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCC---------cEeeecccccccccccCCCC-e-EEEEeccCCCCc
Confidence 46799999999994 6777666 9999999975421 23444555 68999999998 5 8887765 45
Q ss_pred eEEEEeCCC--ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 190 KICLWDVSA--LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 190 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
...+|.+.. ...... +.. ...+...+|+|++..++++.+.++.+.+||+.+++...... +.. .+++|+
T Consensus 89 ~~~l~~~~~~~~g~~~~------l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~s 158 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQR------LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSD 158 (582)
T ss_dssp CEEEEEEETTSTTCCEE------CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEE
T ss_pred ceEEEEEeccCCCcccc------ccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEEC
Confidence 566766544 222111 111 12234567888666655555555666799998886544333 222 789999
Q ss_pred CCCCcEEEEEeCC----CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCccccc
Q 015484 268 PYNEWVLATASSD----TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLE 341 (406)
Q Consensus 268 ~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 341 (406)
|+|+ .|++++.+ +.|++||+.++. ...+..|...+..++|+|+|+ .|+++..++ .|++||+...
T Consensus 159 pDG~-~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~------ 228 (582)
T 3o4h_A 159 IRGD-LIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDG------ 228 (582)
T ss_dssp EETT-EEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTC------
T ss_pred CCCC-EEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCC------
Confidence 9999 78877766 689999998755 457788888999999999998 477888888 8999999762
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEE--------eCCCCCcEEEEEeCCCcEEEEeC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFS--------WNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~--------~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
... ...+|...+..++ |+|+|. ++++++.|+.+++|++
T Consensus 229 --------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 229 --------SVE-DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID 274 (582)
T ss_dssp --------CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred --------cEE-EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE
Confidence 222 4456777777778 999995 8999999999999999
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=186.52 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=169.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---CeeEEEecCCCCCeEEEecCC----
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---EGYGLSWSPFKEGYLVSGSHD---- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~d---- 188 (406)
..+.+++|+|++. ++++ +.||+|++||..+. .....+.+|.. .|.+++|||+|+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g--------~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~~ 85 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETN--------TSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGC--------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCS
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCC--------cEEEEeccccccccccceEEECCCCC-EEEEEecCccce
Confidence 3577899999995 5665 78999999999874 22445555554 499999999998 88888764
Q ss_pred -----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC---
Q 015484 189 -----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE--- 260 (406)
Q Consensus 189 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 260 (406)
+.|.+||+.++.. . .+.....+...+..++|+| +++.|+.++. +.|++||+.+++.......+...
T Consensus 86 ~~~~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP-Q---SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp SSCCCSEEEEEESSSCCC-E---ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eecceeeEEEEECCCCce-E---eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 7888999988653 1 1222233445588999999 5667767665 79999999988765544333332
Q ss_pred ---------------eeEEEecCCCCcEEEEEeCCC----------------------------------cEEEEeCCCC
Q 015484 261 ---------------VNYLSFNPYNEWVLATASSDT----------------------------------TVALFDMRKM 291 (406)
Q Consensus 261 ---------------v~~i~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~ 291 (406)
+.+++|+|+|+ .|++++.++ .|++||+.+.
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 37899999999 777766442 7999999876
Q ss_pred CCCcEEecCC------CCCeEEEEEcCCCCCEEEEEeC----CCcEEEEeCCCCCcccccccccCCCCeeEEEe-cCCCC
Q 015484 292 TVPLHILSSH------TEEVFQVEWDPNHETVLASSAD----DRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-GGHKA 360 (406)
Q Consensus 292 ~~~~~~~~~h------~~~v~~i~~~p~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 360 (406)
.. ...+..+ ...+..++|+|+++ +|++.+. +..|.+||+.+.. ..... ..+..
T Consensus 239 ~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~ 302 (723)
T 1xfd_A 239 TH-DLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV--------------CTKKHEDESEA 302 (723)
T ss_dssp CC-CEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC--------------EEEEEEEECSS
T ss_pred ce-eEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc--------------ceEEEEeccCC
Confidence 53 3445543 56789999999997 4655532 3579999987622 11111 12233
Q ss_pred Ce----eeEEeCCCCCcEEEE-EeCCC------cEEEEe-CCCcc
Q 015484 361 KI----SDFSWNKNDPWVISS-VADDN------TVQVWQ-MTDSI 393 (406)
Q Consensus 361 ~v----~~~~~s~~~~~~l~s-~~~dg------~i~iw~-~~~~~ 393 (406)
.+ ..++|+|+|+++++. +..++ .|.+|+ ..++.
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 33 378999999976554 55677 567777 34443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=180.23 Aligned_cols=242 Identities=12% Similarity=0.111 Sum_probs=172.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|+ ..++++ .++.|++||+.+.. ...+..+...+.+++|+|+|+ .|+++ .++.|.+|+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARK---------VTYLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIAR 147 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTE---------EEEEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEE
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCc---------eEEccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEe
Confidence 67999999999 455554 35999999998732 234556777889999999998 88875 689999999
Q ss_pred CCC-----ccCCceeeeeeeeeccCc--------------cEEEEEeeCCCCCEEEEEe---------------------
Q 015484 196 VSA-----LAQDKVIDAMHVYEAHES--------------VVEDVSWHLKNENLFGSAG--------------------- 235 (406)
Q Consensus 196 ~~~-----~~~~~~~~~~~~~~~~~~--------------~i~~i~~~p~~~~~l~~~~--------------------- 235 (406)
+.+ ++... ....+.. .+.++.|+| +++.|++++
T Consensus 148 ~~~~~~~~g~~~~------~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 148 GGKLGEGMSRAIA------VTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp CBCTTSCCCCCEE------SCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred cCcccccCCCcEE------eccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 987 54311 1111122 258899999 677777776
Q ss_pred ------------cCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcE
Q 015484 236 ------------DDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLH 296 (406)
Q Consensus 236 ------------~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~ 296 (406)
.+..|++||+.+++..... ..+...+.+++|+|+++ .|++++.++ .|.+||+.++.....
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 4467999999988754333 24567799999999999 777766665 899999988633122
Q ss_pred Eec-CCCC---CeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCC
Q 015484 297 ILS-SHTE---EVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNK 369 (406)
Q Consensus 297 ~~~-~h~~---~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~ 369 (406)
... .+.. .+..++|+| +++ ++++++.||.++||++... ...+..+..|...+.. ++|+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~-------------~~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTT-------------GRLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETT-------------SCEEEECCCSSSCEEEEEEECT
T ss_pred EEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECC-------------CCEEEecCCCCeEEEeeeEEcC
Confidence 221 2222 346789999 997 7889999999999987631 1333445566667877 79999
Q ss_pred CCCcEEEEEeCCC----cEEEEeCCCcc
Q 015484 370 NDPWVISSVADDN----TVQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg----~i~iw~~~~~~ 393 (406)
+++.++++++.++ .|..|++.++.
T Consensus 366 dg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 366 KGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9997666666665 67777776654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-18 Score=156.86 Aligned_cols=288 Identities=10% Similarity=0.113 Sum_probs=178.4
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEe--ecCCceeEEEEcCCCCcEEEEEeCCCe
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKI--RVDGEVNRARCMPQKPNLVGTKTSSCE 139 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~~~~~dg~ 139 (406)
+++++|+++.. ..|++..+... ++.+...... .....+..++|+|++ .+|++++.+ .
T Consensus 3 ~~~~vg~~~~~---~~i~~~~~d~~----------------~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~ 61 (365)
T 1jof_A 3 HHLMIGTWTPP---GAIFTVQFDDE----------------KLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-K 61 (365)
T ss_dssp EEEEEEESSSS---CEEEEEEEETT----------------TTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-E
T ss_pred EEEEEEEccCC---CcEEEEEEECC----------------CCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-e
Confidence 57889998643 35666555411 1334444333 344578999999999 567777777 8
Q ss_pred EEEEeCC-CccccccCCCCCceeeeCCCCCeeEEEecCCCCC-eEEEec-------------CCCeEEEEeCCC-ccCCc
Q 015484 140 VYVFDCA-KQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG-YLVSGS-------------HDNKICLWDVSA-LAQDK 203 (406)
Q Consensus 140 i~iw~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~ 203 (406)
|.+|++. +... ........+ +...+++|+|+++. ++++++ .+|.+.+|++.. +...
T Consensus 62 v~~~~~~~~g~~------~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~- 133 (365)
T 1jof_A 62 WSSFAVKSPTEI------VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE- 133 (365)
T ss_dssp EEEEEEEETTEE------EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-
T ss_pred EEEEEECCCCCE------EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-
Confidence 9999986 4211 111111112 23567899999873 244553 689999999974 3221
Q ss_pred eeeeeeeee-ccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECC-CCccc--cccc--ccCCCeeEEEecCCCCcEEEE
Q 015484 204 VIDAMHVYE-AHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLR-TNQTQ--QRVK--AHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 204 ~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~i~~~~~~~~~l~~ 276 (406)
..+..+. .+...+.+++|+| ++++++++. .++.|++||+. +++.. ..+. .+...+..++|+|+|+ ++++
T Consensus 134 --~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v 209 (365)
T 1jof_A 134 --KNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYA 209 (365)
T ss_dssp --EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS-EEEE
T ss_pred --ceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC-EEEE
Confidence 1112111 2456789999999 456555554 46899999998 66542 2222 2356689999999999 5555
Q ss_pred Ee-CCCcEEEEeCCC--CCCC-----cEEec----CCCC------CeEEEE-EcCCCCCEEEEEeCCC-----cEEEEeC
Q 015484 277 AS-SDTTVALFDMRK--MTVP-----LHILS----SHTE------EVFQVE-WDPNHETVLASSADDR-----RLMVWDL 332 (406)
Q Consensus 277 ~~-~dg~i~vwd~~~--~~~~-----~~~~~----~h~~------~v~~i~-~~p~~~~~l~s~~~dg-----~i~iwd~ 332 (406)
++ .++.|.+|++.. +... +..+. +|.. .+..++ |+|+++.++++...++ .|.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 55 478999998753 2211 11111 1122 488999 9999985444333333 8999998
Q ss_pred CCCCcccccccccCCCCeeEE-EecCCCCCeeeEEeCC---CCCcEEEEEeC-CCcEEEEeCCCccc
Q 015484 333 NRIGDEQLELDAEDGPPELLF-SHGGHKAKISDFSWNK---NDPWVISSVAD-DNTVQVWQMTDSIY 394 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~---~~~~~l~s~~~-dg~i~iw~~~~~~~ 394 (406)
...+. ...+. ....+...+..++|+| +|++ |++++. ++.|++|++..+.+
T Consensus 290 ~~~g~-----------~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 290 RDCGS-----------IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp CTTSC-----------EEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSCEEEEEEEETTEE
T ss_pred CCCCC-----------EEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCCeEEEEEEchhhC
Confidence 63111 11111 1233445577899999 7985 556554 58999999977643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=159.26 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=160.9
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
.+++++++ .++++++.++.|++||..+... ...+..+. ..+..++|+|+++..++++..++.|.+||+.+
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTV--------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEE--------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcE--------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence 34566666 7899999999999999987422 33444332 25779999999873455666789999999987
Q ss_pred ccCCceeeeeeeeec-c-----CccEEEEEeeCCCCCEEEEEecC------------CcEEEEECCCCcccccc--cccC
Q 015484 199 LAQDKVIDAMHVYEA-H-----ESVVEDVSWHLKNENLFGSAGDD------------CQLMIWDLRTNQTQQRV--KAHE 258 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~-~-----~~~i~~i~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~--~~~~ 258 (406)
++... .+.. + ...+..++|+| +++.+++++.+ +.|.+||+.+++....+ ..+.
T Consensus 75 ~~~~~------~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 75 CKNTF------HANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp TEEEE------EEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred CcEEE------EEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 64321 1211 1 23378899999 56677677654 89999999885543322 1233
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------------------------------------
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------------------------------- 301 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------------------------- 301 (406)
..+.+++|+|++. +++ ++ +.|.+||+.+++. +..+..+
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 4688999999998 555 33 3499999987553 3333221
Q ss_pred -------------------------------CCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 302 -------------------------------TEEVFQVEWDP-NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 302 -------------------------------~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
...+..++|+| +++. ++++ ++.|.+||+.+ .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~--------------~ 285 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQ--------------R 285 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTT--------------T
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECcc--------------C
Confidence 11456778889 8874 6555 88999999976 2
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+.+..... ...+.+++|+|+++++ ++++.++.|++||+.++..
T Consensus 286 ~~~~~~~~-~~~~~~~~~s~dg~~l-~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 286 KLIKAANL-DHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEEEEEEC-SSCCCEEEECSSSSCE-EEESBSSEEEEEETTTTEE
T ss_pred eEEEEEcC-CCCccceEECCCCCEE-EEecCCCeEEEEeccccce
Confidence 33333332 2357899999999864 4567889999999987643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=179.26 Aligned_cols=248 Identities=11% Similarity=0.092 Sum_probs=182.1
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+|.+.+.++.|+++ .++++++.+|.+.||.+... ......+..|. .+..++|+|+|. .|+.+ .++
T Consensus 198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~-~~~~~~~SpDG~-~la~~-~~~ 265 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLD-------GKDLRKHTSFT-DYYPRHLNTDGR-RILFS-KGG 265 (1045)
T ss_dssp EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETT-------SCSCEECCCCC-SSCEEEEEESSS-CEEEE-ETT
T ss_pred ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCC-------CCcceEecCCC-CcceeeEcCCCC-EEEEE-eCC
Confidence 34679999999999987 46778888899999987642 11234454554 467789999998 78877 589
Q ss_pred eEEEEeCCCccCCceeee-----eeeeeccCccEEEEEee-CCCCCEEEEEecCCcEEEEECCCCcccccccccCC-Cee
Q 015484 190 KICLWDVSALAQDKVIDA-----MHVYEAHESVVEDVSWH-LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVN 262 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~ 262 (406)
.|.+|++..... ..+.. ......|...+.+++|+ | +++.+++++ ++.|.+|++..++... +..+.. .+.
T Consensus 266 ~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~ 341 (1045)
T 1k32_A 266 SIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYV 341 (1045)
T ss_dssp EEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEE
T ss_pred EEEEecCCceEe-eeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEE
Confidence 999999843211 01000 00011244578999999 9 566666666 7899999998776433 445666 899
Q ss_pred EEEecCCCCcEEEEEeCCCcEE-EEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 263 YLSFNPYNEWVLATASSDTTVA-LFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.++|+ +++ .|+.++.++.+. +||+.... ...+..|...+..++|+|+++ .|++++.++.|++||+.+
T Consensus 342 ~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~t------- 409 (1045)
T 1k32_A 342 RRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET------- 409 (1045)
T ss_dssp EECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT-------
T ss_pred eeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCC-------
Confidence 99999 888 777777788888 89987643 345557888999999999997 588999999999999976
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC----------CcEEEEeCCCcc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD----------NTVQVWQMTDSI 393 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d----------g~i~iw~~~~~~ 393 (406)
........+|...+.+++|+|+|++ |++++.+ +.|++||+.++.
T Consensus 410 -------g~~~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 410 -------GKPTVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp -------CCEEEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred -------CceEEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc
Confidence 2333444578888999999999995 5555544 489999998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-19 Score=180.86 Aligned_cols=234 Identities=9% Similarity=0.049 Sum_probs=178.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-----------CCCCeeEEEec-CCCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-----------HDKEGYGLSWS-PFKEGYLV 183 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~~l~ 183 (406)
..+...+|+|++. .|+.+ .++.|++|++.... +..+.+ |...+.+++|+ |+|. .|+
T Consensus 245 ~~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~~---------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la 312 (1045)
T 1k32_A 245 TDYYPRHLNTDGR-RILFS-KGGSIYIFNPDTEK---------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIA 312 (1045)
T ss_dssp CSSCEEEEEESSS-CEEEE-ETTEEEEECTTTCC---------EEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEE
T ss_pred CCcceeeEcCCCC-EEEEE-eCCEEEEecCCceE---------eeeeccCcccccccccccccccceeeecCCCCC-EEE
Confidence 3577889999995 56665 48999999984321 122222 44578999999 9998 788
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCc-cEEEEEeeCCCCCEEEEEecCCcEE-EEECCCCcccccccccCCCe
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHES-VVEDVSWHLKNENLFGSAGDDCQLM-IWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v 261 (406)
+++ ++.|.+|++..+.. ..+..|.. .+..++|+ ++..++.++.++.+. +||+.+++... +..+...+
T Consensus 313 ~~~-~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~ 381 (1045)
T 1k32_A 313 FVS-RGQAFIQDVSGTYV-------LKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNV 381 (1045)
T ss_dssp EEE-TTEEEEECTTSSBE-------EECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSE
T ss_pred EEE-cCEEEEEcCCCCce-------EEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-ecCCccce
Confidence 877 78999999876532 22345666 89999999 566777777788888 99998766433 33677889
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC----------CcEEEEe
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD----------RRLMVWD 331 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d----------g~i~iwd 331 (406)
..++|+|+|+ .|++++.++.|++||+.++.. ......|...+.+++|+|++++ |++++.+ +.|++||
T Consensus 382 ~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGK-FAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSS-EEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCC-EEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEE
Confidence 9999999999 899999999999999987653 4555588899999999999985 6666544 4899999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+.. .. ...+..|...+..++|+|+|+ .|+.++.++...+|+...
T Consensus 459 ~~~--------------g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 459 MEG--------------RK-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp TTT--------------TE-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSS
T ss_pred CCC--------------Cc-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhc
Confidence 976 12 445566777889999999999 577778888888887643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-18 Score=151.94 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=154.1
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
++.|.+|.+...... .. ......+......++|+|+++ +++++.. ++.|.+|++..+. ...+..+..+
T Consensus 15 ~~~i~v~~~d~~tg~----~~-~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~----~~~~~~~~~~ 84 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKT----LT-NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT----AHKLNTVVAP 84 (347)
T ss_dssp CCEEEEEEEETTTTE----EE-EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE----EEEEEEEEEE
T ss_pred CCCEEEEEEcCCCCe----EE-EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc----EEEeeeeecC
Confidence 556888877652111 11 112334556678899999887 5555532 6899999996543 2233444456
Q ss_pred CccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCC-cc--cccccc---------cCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTN-QT--QQRVKA---------HEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~-~~--~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
...+..++|+| +++++++++ .++.|.+|++... .. +..+.. ....+.+++|+|+++ ++++...++
T Consensus 85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 67788999999 566555555 7899999999632 21 222211 123478899999999 888888888
Q ss_pred cEEEEeCCCCCCC--cEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 282 TVALFDMRKMTVP--LHILSS-HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 282 ~i~vwd~~~~~~~--~~~~~~-h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
.|.+||+...... +..+.. ....+..++|+|+++.+++++..++.|.+|++...... ...+......
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~----------~~~~~~~~~~ 232 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA----------FTQLGIVKTI 232 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE----------EEEEEEEESS
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------eEEeeeeeec
Confidence 9999999832221 112222 23468899999999866666778999999998742111 1112222211
Q ss_pred C------CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 359 K------AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 359 ~------~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
. ..+..++|+|+|++++++...++.|.+|++.
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 1 3488899999999766777789999999987
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=160.64 Aligned_cols=272 Identities=13% Similarity=0.075 Sum_probs=183.9
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecC-
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVD- 115 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 115 (406)
..|+.++.+.||.. +++++... .+.+.|+.+. .. +..+...|.
T Consensus 21 ~~~~~~~~~~~DG~------------~la~~s~~----~g~~~lw~~~-----------~g---------~~~~lt~~~~ 64 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD------------KLLVVGFS----EGSVNAYLYD-----------GG---------ETVKLNREPI 64 (582)
T ss_dssp HSCEEEEEEEETTT------------EEEEEEEE----TTEEEEEEEE-----------TT---------EEEECCSSCC
T ss_pred ccchheeecCCCCC------------eEEEEEcc----CCceeEEEEc-----------CC---------CcEeeecccc
Confidence 34899999999632 45554432 2456666653 10 123334555
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCeEEEEeCCC--ccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 116 GEVNRARCMPQKPNLVGTKTS---SCEVYVFDCAK--QAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+..++|+|+ .+++++.. +....||.+.. ... ...+..+ ..+...+|+|+++..+++.+.++.
T Consensus 65 ~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~--------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~ 133 (582)
T 3o4h_A 65 NSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGE--------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDR 133 (582)
T ss_dssp SEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTC--------CEECTTS-CSBEEEEEEECSSCEEEEEECSSC
T ss_pred cccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCc--------cccccCC-CCceeeeeCCCCCeEEEEecCCCC
Confidence 68999999998 46776664 44456655443 211 1122222 234467888888755555555555
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
+.+||+.+++.. .+..+.. .+++|+| +++.+++++.+ +.|++||+.+++.. .+..+...+..++|
T Consensus 134 ~~l~d~~~g~~~-------~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~ 202 (582)
T 3o4h_A 134 VALYALDGGGLR-------ELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASI 202 (582)
T ss_dssp EEEEEEETTEEE-------EEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEE
T ss_pred ceEEEccCCcEE-------EeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceE
Confidence 669999876321 1122222 7899999 67888877766 78999999887754 56667888999999
Q ss_pred cCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEE--------EcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 267 NPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVE--------WDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~--------~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+|+|+ .|+++..++ .|++||+.++.. . .+..|...+..+. |+|+| .++++++.||.+++|++ .
T Consensus 203 SpDG~-~l~~~~~~~~~~i~~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g-- 275 (582)
T 3o4h_A 203 SPGMK-VTAGLETAREARLVTVDPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G-- 275 (582)
T ss_dssp CTTSC-EEEEEECSSCEEEEEECTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T--
T ss_pred CCCCC-EEEEccCCCeeEEEEEcCCCCcE-E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C--
Confidence 99999 777888888 899999987654 3 6677777777777 99999 68999999999999999 2
Q ss_pred cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc---EEEEeCCC
Q 015484 337 DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT---VQVWQMTD 391 (406)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~---i~iw~~~~ 391 (406)
+ ... .+...|.+++|+ +++ ++++++.+.. +.+|+..+
T Consensus 276 ~-------------~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 276 E-------------RVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E-------------EEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred C-------------eec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 1 111 123568899999 888 5677776643 66676654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-18 Score=152.01 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=158.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-C-CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-K-EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID 206 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 206 (406)
.++++++.++.|.+||..+... ...+.... . .+.+++|+|+++.++++++.++.|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE--------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4789999999999999987322 33343222 1 478999999997455677778999999998764322111
Q ss_pred eeeeeeccCccEEEEEeeCCCCCEEEEEe------------cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 207 AMHVYEAHESVVEDVSWHLKNENLFGSAG------------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
... ...+...+.+++|+| +++.++++. .++.|.+||+.+++.+..+.. ...+.+++|+|+++ .|
T Consensus 74 ~~~-~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l 149 (337)
T 1pby_B 74 LST-PEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-KL 149 (337)
T ss_dssp CCB-TTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-CE
T ss_pred cCC-cccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC-EE
Confidence 000 000122567899999 566666664 579999999998877666653 45678899999998 55
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----------------------cEEEEe
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR-----------------------RLMVWD 331 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----------------------~i~iwd 331 (406)
+++ ++.|.+||+.+++. +..+..+.. ...+.|+|++..+++++..++ .|.+||
T Consensus 150 ~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 555 68899999987653 444443331 112378999986544444443 367888
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..... . ......+...+.+++|+|++++ ++++ ++.|.+||+.++..
T Consensus 226 ~~~~~~------------~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~ 272 (337)
T 1pby_B 226 LETGEM------------A-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNAS 272 (337)
T ss_dssp TTTCCE------------E-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEE
T ss_pred CCCCCc------------e-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcC
Confidence 876221 1 2233445667889999999995 5555 68999999987643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=174.38 Aligned_cols=242 Identities=9% Similarity=0.075 Sum_probs=159.8
Q ss_pred eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC---CeeEEEecCCCCCeEEEecC--------
Q 015484 119 NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK---EGYGLSWSPFKEGYLVSGSH-------- 187 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~-------- 187 (406)
..++|+|++ .++++ +.|++|++||+.+... ...+.+|.. .+.+++|||+|+ +|++++.
T Consensus 19 ~~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~s 87 (719)
T 1z68_A 19 FFPNWISGQ-EYLHQ-SADNNIVLYNIETGQS--------YTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRYS 87 (719)
T ss_dssp CCCEESSSS-EEEEE-CTTSCEEEEESSSCCE--------EEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSSC
T ss_pred CccEECCCC-eEEEE-cCCCCEEEEEcCCCcE--------EEEEccccccccceeeEEECCCCC-eEEEEecCceeEEee
Confidence 367999999 55555 4699999999987422 333333332 488999999999 8888876
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCe----
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEV---- 261 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v---- 261 (406)
++.|++||+.+++.... ..+ ...+..++|+| +++.|+.+. ++.|++||+.+++..... .++...+
T Consensus 88 ~~~~i~~~d~~~g~~~~~----~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 88 YTATYYIYDLSNGEFVRG----NEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp EEEEEEEEETTTTEECCS----SCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred cceEEEEEECCCCccccc----eec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 78999999988643100 011 24588899999 566666664 789999999887764322 2222222
Q ss_pred -------------eEEEecCCCCcEEEEEeCCC----------------------------------cEEEEeCCCCCCC
Q 015484 262 -------------NYLSFNPYNEWVLATASSDT----------------------------------TVALFDMRKMTVP 294 (406)
Q Consensus 262 -------------~~i~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~~~~ 294 (406)
.+++|+|+|+ .|++++.|. .|++||+.+....
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 4899999999 777776542 7889999875420
Q ss_pred ----c---EEecCCCCCeEEEEEcCCCCCEEEEEeCC----CcEEEEe----CCCCCcccccccccCCCCeeE-EEecCC
Q 015484 295 ----L---HILSSHTEEVFQVEWDPNHETVLASSADD----RRLMVWD----LNRIGDEQLELDAEDGPPELL-FSHGGH 358 (406)
Q Consensus 295 ----~---~~~~~h~~~v~~i~~~p~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~-~~~~~h 358 (406)
+ ..+..|...+..++|+|+++ ++++.... ..|.+|| +.+.... .+. ....+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-----------~~~~~~~~~~ 305 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCP-----------KTQEHIEESR 305 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECC-----------GGGEEEEECS
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceE-----------EEEecccccC
Confidence 1 12345778899999999975 56664422 2488888 5542111 111 011345
Q ss_pred CCCee-----eEEeCCCCCcEEE-EEeCCC--cEEEEeCCCcc
Q 015484 359 KAKIS-----DFSWNKNDPWVIS-SVADDN--TVQVWQMTDSI 393 (406)
Q Consensus 359 ~~~v~-----~~~~s~~~~~~l~-s~~~dg--~i~iw~~~~~~ 393 (406)
...+. .+.|+|+|+.+++ +...+| .|.+|++.++.
T Consensus 306 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 306 TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 56666 8899999996544 344555 46666776654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=166.13 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=159.2
Q ss_pred ceeEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 117 EVNRARCMPQKPNLVGTKTS---------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
.+.+++|+|+| ..||+++. ++.|++||+.+..... ...+ ...+..++|||+|+ .|+.+.
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------~~~l---~~~~~~~~~SPDG~-~la~~~- 128 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------GNEL---PRPIQYLCWSPVGS-KLAYVY- 128 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------SSCC---CSSBCCEEECSSTT-CEEEEE-
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCcccc------ceec---CcccccceECCCCC-EEEEEE-
Confidence 49999999999 56777665 6899999998743200 0111 24688999999999 888875
Q ss_pred CCeEEEEeCCCccCCceeee---eeeeeccCcc---------EEEEEeeCCCCCEEEEEecCC-----------------
Q 015484 188 DNKICLWDVSALAQDKVIDA---MHVYEAHESV---------VEDVSWHLKNENLFGSAGDDC----------------- 238 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~---------i~~i~~~p~~~~~l~~~~~dg----------------- 238 (406)
++.|++|++.++........ ...+.++... ..+++|+| +++.|+.++.|.
T Consensus 129 ~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 129 QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 78999999987643211000 0011122111 24899999 677777776542
Q ss_pred -----------------cEEEEECCCCccc--------ccccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEe--
Q 015484 239 -----------------QLMIWDLRTNQTQ--------QRVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFD-- 287 (406)
Q Consensus 239 -----------------~i~i~d~~~~~~~--------~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd-- 287 (406)
.|++||+.+++.. ..+..+...+.+++|+|++. ++++....+ .|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEEC
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEccc
Confidence 7889999887643 22345777899999999976 666644322 488899
Q ss_pred --CCCCCCCcEEe----cCCCCCeE-----EEEEcCCCCCEEE-EEeCCCc--EEEEeCCCCCcccccccccCCCCeeEE
Q 015484 288 --MRKMTVPLHIL----SSHTEEVF-----QVEWDPNHETVLA-SSADDRR--LMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 288 --~~~~~~~~~~~----~~h~~~v~-----~i~~~p~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+.++.. ...+ ..|...+. .+.|+|+|+.+++ ++..+|. |.+||+.... ..
T Consensus 287 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------------~~ 350 (719)
T 1z68_A 287 EDWQTWDC-PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------------AI 350 (719)
T ss_dssp SSSSSEEC-CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------CE
T ss_pred CCCCCCce-EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------eE
Confidence 766543 2233 35666666 8899999986544 3445664 5566654411 12
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeC----CCcEEEEeCCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVAD----DNTVQVWQMTD 391 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~----dg~i~iw~~~~ 391 (406)
.+..+...+..+.++ +++.+++++.. ++..++|.+..
T Consensus 351 ~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 351 QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 233345557777777 77766666654 48899998753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=143.87 Aligned_cols=239 Identities=7% Similarity=0.057 Sum_probs=153.9
Q ss_pred cEEEEEe----CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC----CeEEEEeCCCcc
Q 015484 129 NLVGTKT----SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----NKICLWDVSALA 200 (406)
Q Consensus 129 ~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~ 200 (406)
.++.+|+ .++.|++|.+..... ........ +......++|+|+++ +|++++.+ +.|.+|++....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g----~~~~~~~~--~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETG----ESLPLSDA--EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTC----CEEEEEEE--ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCC----CEEEeecc--cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC
Confidence 3455554 356899998764211 11112222 667778899999998 88888875 899999987631
Q ss_pred CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--------------ccCCCeeEEEe
Q 015484 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------------AHEKEVNYLSF 266 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~v~~i~~ 266 (406)
..+..+.....+......+++ ++..++++...++.|.+|++.....+..+. .+...+.+++|
T Consensus 87 --g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 87 --GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp --TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred --CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 112233333444556677777 244455555578999999997544332221 11234578999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCC----C-c-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTV----P-L-------HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~----~-~-------~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|+++.+++++..++.|.+|++..... . + .....+...+..++|+|+++.++++...++.|.+|++..
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 999995555555688999999875442 1 1 122334567889999999985444554799999999874
Q ss_pred CCcccccccccCCCCeeEEE---ecCCCCCeeeEEeCCCCCcEEEEEeC-CCcEEEEeCC
Q 015484 335 IGDEQLELDAEDGPPELLFS---HGGHKAKISDFSWNKNDPWVISSVAD-DNTVQVWQMT 390 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~~l~s~~~-dg~i~iw~~~ 390 (406)
.. ...+.. ...+...+..++|+|+|++++++... ++.|.+|++.
T Consensus 243 g~------------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 243 GM------------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp TE------------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred Cc------------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 21 011111 22333457899999999965555555 6899999996
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-16 Score=140.06 Aligned_cols=248 Identities=15% Similarity=0.124 Sum_probs=175.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCC------------------------CeEEEEeCCCccccccCCCCCceeee-CCCCCee
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS------------------------CEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGY 170 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 170 (406)
+.+.+++++|++ +++++...+ +.|.+||..+... ...+. ++-....
T Consensus 24 ~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 24 GQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------LQSSGKNLFYLPH 94 (329)
T ss_dssp SCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--------EEEECTTTCSSEE
T ss_pred CCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--------EeccCCCccCCce
Confidence 679999999998 677777766 4799999876321 22222 3445788
Q ss_pred EEEecCCCCCeEEEecCCCeEEEEeCCCcc-CCceeeee---eeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEEC
Q 015484 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALA-QDKVIDAM---HVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDL 245 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~ 245 (406)
++++++++. ++++...++.|++|+..... ....+... ..-..+-.....++++|.++.++++.+ .++.|++||
T Consensus 95 gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 95 GLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred EEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 999999998 88888889999999976431 11111000 000123346889999986788888886 689999999
Q ss_pred CCCcccccccc----------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCC
Q 015484 246 RTNQTQQRVKA----------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPN 313 (406)
Q Consensus 246 ~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~ 313 (406)
..++.+..+.. +-.....++++|++..++++...++.|++||..+++. +..+ ..+...+..++|+|
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p- 250 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIP- 250 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEET-
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecC-
Confidence 45665555532 2234789999998444888888889999999986543 4554 34566889999999
Q ss_pred CCCEEEEEe-------CCCcEEEEeCCCCCcccccccccCCCCeeEEEe---cCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 314 HETVLASSA-------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH---GGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 314 ~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
+ .++++.+ .+..|++||+... .++..+ .++...+.+++++|+|. ++++...++.
T Consensus 251 g-~~~~~~g~~~v~~~~~~~v~~~~~~~g--------------~~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~~ 314 (329)
T 3fvz_A 251 G-FLFAVNGKPYFGDQEPVQGFVMNFSSG--------------EIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNT 314 (329)
T ss_dssp T-EEEEEECCCCTTCSCCCCEEEEETTTC--------------CEEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSCC
T ss_pred C-EEEEeCCCEEeccCCCcEEEEEEcCCC--------------eEEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCCE
Confidence 3 2333332 3458999998762 334443 35667799999999996 8999999999
Q ss_pred EEEEeCCCc
Q 015484 384 VQVWQMTDS 392 (406)
Q Consensus 384 i~iw~~~~~ 392 (406)
|++|++...
T Consensus 315 I~~~~~~~~ 323 (329)
T 3fvz_A 315 VWKFTLTEK 323 (329)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeCCcc
Confidence 999998753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-16 Score=135.57 Aligned_cols=237 Identities=12% Similarity=0.162 Sum_probs=165.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------CCCCCeeEEEec-CCCCCeEEEecC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------GHDKEGYGLSWS-PFKEGYLVSGSH 187 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~l~s~~~ 187 (406)
-..+.++++.|++ .++++...++.|.+|+..... ...+. ++...+.++++. +++. ++++...
T Consensus 29 ~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~---------~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~ 97 (286)
T 1q7f_A 29 FTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRF---------KFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS 97 (286)
T ss_dssp BSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCE---------EEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG
T ss_pred cCCCceEEECCCC-CEEEEECCCCEEEEECCCCcE---------EEEecccCCCcccccCceEEEEEcCCCe-EEEEcCC
Confidence 3568899999998 578887889999999976421 12221 244568899995 5554 5555533
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--ccCCCeeE
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--AHEKEVNY 263 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~ 263 (406)
++.|.+||. ++.. + ..+. .+...+.+++++| +++++++...++.|.+||.. ++.+..+. .+...+..
T Consensus 98 ~~~~i~~~d~-~g~~---~---~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 98 PTHQIQIYNQ-YGQF---V---RKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNG 168 (286)
T ss_dssp GGCEEEEECT-TSCE---E---EEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEE
T ss_pred CCCEEEEECC-CCcE---E---EEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEE
Confidence 789999994 3321 1 2221 2335688999998 56788887788999999964 44444442 33456899
Q ss_pred EEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC--CCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccc
Q 015484 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH--TEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQL 340 (406)
Q Consensus 264 i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~ 340 (406)
++++|++. ++++...++.|++||... . .+..+..+ ...+..++++|++. ++++...++ .|.+||...
T Consensus 169 i~~~~~g~-l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g------ 238 (286)
T 1q7f_A 169 VVVNDKQE-IFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG------ 238 (286)
T ss_dssp EEECSSSE-EEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS------
T ss_pred EEECCCCC-EEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC------
Confidence 99999988 777777789999999753 2 24445433 36789999999995 677777775 999999643
Q ss_pred cccccCCCCeeEEEecCC--CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 341 ELDAEDGPPELLFSHGGH--KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 341 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+..+..+ ...+.+++++|+|. ++++ +.|+.|++|++...
T Consensus 239 ---------~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 ---------QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ---------CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCC
T ss_pred ---------CEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccc
Confidence 222222222 23477999999997 6776 57999999998653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=158.48 Aligned_cols=250 Identities=9% Similarity=0.069 Sum_probs=162.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCC-----eeEEEecCCCCCeEEEecCC--
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-----GYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~d-- 188 (406)
.....++|+|++ .+++++ ||+|++|++.+... ...+.+|... ...++|||+|+ +|+.++.+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNS--------SVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVK 84 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTTCCE--------EEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEEE
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCCCce--------EEEEechhhhhhcccccceEECCCCC-EEEEEECCee
Confidence 456789999999 677775 89999999987432 3445555432 24488999998 88888776
Q ss_pred -------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCC
Q 015484 189 -------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKE 260 (406)
Q Consensus 189 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~ 260 (406)
+.+.+||+.+++.. .+..+...+...+|+| +++.||.+ .++.|++||+.+++..+.. .++...
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~-------~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI-------TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC-------CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred eEEEccceEEEEEECCCCcEE-------EcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 56779999986432 2344667899999999 56666665 4689999999887653321 222222
Q ss_pred -----------------eeEEEecCCCCcEEEEEeCCC------------------------------------cEEEEe
Q 015484 261 -----------------VNYLSFNPYNEWVLATASSDT------------------------------------TVALFD 287 (406)
Q Consensus 261 -----------------v~~i~~~~~~~~~l~~~~~dg------------------------------------~i~vwd 287 (406)
...+.|+|+|+ .||.++.|. .|++||
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d 234 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN 234 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred eecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence 23589999999 676654221 478899
Q ss_pred CCC---CCC-CcEEec------CCCCCeEEEEEcCCCCCEEEEEe-C---CCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 288 MRK---MTV-PLHILS------SHTEEVFQVEWDPNHETVLASSA-D---DRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 288 ~~~---~~~-~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~-~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+.+ +.. ....+. .|...+..++|+|+++ +++... . +..|.+||+.+........ ....+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~-----~~~~l- 307 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCL-----VARQH- 307 (740)
T ss_dssp TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEEC-----GGGCE-
T ss_pred CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCcccccee-----EEEEe-
Confidence 887 531 133333 3777899999999997 444432 2 3479999987643000000 00111
Q ss_pred EecCCCCCee-----eEEeCCCCCcEEEEEe-CCC--cEEEEeCCCccc
Q 015484 354 SHGGHKAKIS-----DFSWNKNDPWVISSVA-DDN--TVQVWQMTDSIY 394 (406)
Q Consensus 354 ~~~~h~~~v~-----~~~~s~~~~~~l~s~~-~dg--~i~iw~~~~~~~ 394 (406)
...+|...|. .++|+|+|+.++...+ .+| .|.+|++.++..
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 1133444444 7899999996542444 444 477778876644
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=143.62 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=159.5
Q ss_pred EeecCCceeE-----EEEcCCCCcEEEEEeC-CC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 111 KIRVDGEVNR-----ARCMPQKPNLVGTKTS-SC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 111 ~~~h~~~v~~-----i~~~p~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
...|.+.... .+|+|++. .|+.++. +| .|.+||+..... .....++...+.+++|+|+++ .|
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~spdg~-~l 95 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVA--------TQLTEGRGDNTFGGFLSPDDD-AL 95 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEE--------EECCCSSCBCSSSCEECTTSS-EE
T ss_pred ecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCce--------EEeeeCCCCCccceEEcCCCC-EE
Confidence 3345555554 78999995 4555555 67 488888876322 223344555555788999998 89
Q ss_pred EEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEE--eeCCCCCEEEEE----------------------ecCC
Q 015484 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVS--WHLKNENLFGSA----------------------GDDC 238 (406)
Q Consensus 183 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~--~~p~~~~~l~~~----------------------~~dg 238 (406)
+.++.++.|.+||+.+++.. .....+...+.... ++| ++.+++.. ..+.
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~------~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEEN------VVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp EEEETTTEEEEEETTTCCEE------EEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred EEEeCCCeEEEEECCCCcce------eeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 99988999999999886432 12223344443333 366 56666532 2346
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecC-CCCcEEEEEeCC------CcEEEEeCCCCCCCcEEecCCC--CCeEEEE
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNP-YNEWVLATASSD------TTVALFDMRKMTVPLHILSSHT--EEVFQVE 309 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~h~--~~v~~i~ 309 (406)
.|.+||+.+++.. .+..+...+..++|+| ++. .|+....+ ..|.++|..... ...+..+. ..+....
T Consensus 169 ~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 169 RLMRVDLKTGEST-VILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEEEETTTCCEE-EEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEE
T ss_pred eEEEEECCCCceE-EeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccce
Confidence 7999999988643 3444567789999999 888 66655543 378888876533 34454444 2578899
Q ss_pred EcCCCCCEEEEEeCCC----cEEEEeCCCCCcccccccccCCCCeeEEEecCCCC---CeeeEEeCCCCCcEEEEE----
Q 015484 310 WDPNHETVLASSADDR----RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA---KISDFSWNKNDPWVISSV---- 378 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~~l~s~---- 378 (406)
|+|+|+.++.++..++ .|.+||+..... ..+....++.. ....++|+|+|++++++.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLEN------------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------------EEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCce------------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 9999987545444333 399999986332 22222222110 123347999999655443
Q ss_pred ----eCCCcEEEEeCCCccc
Q 015484 379 ----ADDNTVQVWQMTDSIY 394 (406)
Q Consensus 379 ----~~dg~i~iw~~~~~~~ 394 (406)
..+..|++|++.++..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 313 GYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ----CCCCEEEEEETTTTEE
T ss_pred ccccCCCCEEEEEeccCCce
Confidence 4567899999988754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-16 Score=138.91 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=141.5
Q ss_pred EEEeecCC--ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC------CCCeeEEEecCCCCC
Q 015484 109 AQKIRVDG--EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH------DKEGYGLSWSPFKEG 180 (406)
Q Consensus 109 ~~~~~h~~--~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~ 180 (406)
...+.... .+..++|+|++..+++++..++.|.+||+.+... ...+..+ ...+.+++|+|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~spdg~- 104 (349)
T 1jmx_B 34 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--------TFHANLSSVPGEVGRSMYSFAISPDGK- 104 (349)
T ss_dssp EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--------EEEEESCCSTTEEEECSSCEEECTTSS-
T ss_pred EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--------EEEEEcccccccccccccceEECCCCC-
Confidence 33444444 7889999999965667777889999999987422 2233322 22378999999998
Q ss_pred eEEEecCC------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 181 YLVSGSHD------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 181 ~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
+|++++.+ +.|.+||+.+++....+ ..+. +...+.+++|+|+ ++++ +++ +.|.+||+.++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~-~~~~~~~~~~s~d-g~l~-~~~--~~i~~~d~~~~ 176 (349)
T 1jmx_B 105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---RTFP-MPRQVYLMRAADD-GSLY-VAG--PDIYKMDVKTG 176 (349)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---EEEE-CCSSCCCEEECTT-SCEE-EES--SSEEEECTTTC
T ss_pred EEEEEcccccccccccccCCCeEEEEECCCcccccee---eecc-CCCcccceeECCC-CcEE-Ecc--CcEEEEeCCCC
Confidence 88888765 89999999875432222 2222 3346888999995 4555 443 34999999888
Q ss_pred cccccccccC--------------------------------------------------------------------CC
Q 015484 249 QTQQRVKAHE--------------------------------------------------------------------KE 260 (406)
Q Consensus 249 ~~~~~~~~~~--------------------------------------------------------------------~~ 260 (406)
+....+.... ..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
T 1jmx_B 177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 256 (349)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCc
Confidence 7654442111 13
Q ss_pred eeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 261 VNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 261 v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+..++|+| +++ +++++ ++.|.+||+.+.+. +..+.. ...+.+++|+|+++. |++++.++.|.+||+.+
T Consensus 257 ~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 257 YFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKL-IKAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEEEECSSCTT-EEEEE--ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTT
T ss_pred ceeeEecCCCCC-EEEEE--cCeEEEEECccCeE-EEEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccc
Confidence 45677889 888 66666 78999999987553 444433 345789999999986 55577889999999976
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-15 Score=148.77 Aligned_cols=246 Identities=9% Similarity=-0.012 Sum_probs=163.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCee---------EEEec--CC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTK--TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGY---------GLSWS--PF 177 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~~ 177 (406)
..+|...+..++|+++. .+++.. +.++...||..... .....+..|...+. ...|+ |+
T Consensus 19 ~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 19 VASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp HHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS
T ss_pred HhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecC
Confidence 34688999999999876 456665 55788999986331 11344555555555 56666 99
Q ss_pred CCCe-EEEec-CCCeEEEEeCC--C-ccCCceeeeeeeeec-----cCccEEEEEeeCCCCCEEEEEecC----------
Q 015484 178 KEGY-LVSGS-HDNKICLWDVS--A-LAQDKVIDAMHVYEA-----HESVVEDVSWHLKNENLFGSAGDD---------- 237 (406)
Q Consensus 178 ~~~~-l~s~~-~dg~i~iwd~~--~-~~~~~~~~~~~~~~~-----~~~~i~~i~~~p~~~~~l~~~~~d---------- 237 (406)
|+ . |+.++ .+..|.++++. . +. . ..+.. |...+.+++|+| +++.|+.++.+
T Consensus 90 g~-~~la~~~~~~~~l~~~~~~~~g~~~-~------~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 90 GG-PLLVFTHFGDQRLYAFEPDAPGGAV-P------RPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp SS-CEEEEEBTTTCCEEEECTTSTTCCC-C------EECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEE
T ss_pred CC-eEEEEEECCCCeEEEEcCCCCCCCC-C------EeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCce
Confidence 98 5 55444 35677777765 2 22 1 12222 566788999999 56777777766
Q ss_pred CcEEEEECCC------Cccccccc-ccCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCC-CCC--CCcEEec
Q 015484 238 CQLMIWDLRT------NQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMR-KMT--VPLHILS 299 (406)
Q Consensus 238 g~i~i~d~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~~--~~~~~~~ 299 (406)
..|++||+.+ ++. ..+. .+...+..++|+|+|+ .|+.++.+ ..|++||+. ++. .......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 443 3444 4556788899999999 66666544 379999998 441 3233344
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--------CeeeEEeCC
Q 015484 300 SHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--------KISDFSWNK 369 (406)
Q Consensus 300 ~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~s~ 369 (406)
.|...+..+.|+|+|+ ++++++.++ .|.+||+..... ......+.. .+..++|+|
T Consensus 239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~--------------~~l~~~~~~~~~p~w~~~~~~~~~~~ 303 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA--------------TQLCRREEEFAGPLWTPGMRWFAPLA 303 (662)
T ss_dssp ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCE--------------EESSCCSSBSSCCCCSTTCCSEEECT
T ss_pred CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCce--------------eecccccccccCccccccCceEeEeC
Confidence 5578899999999998 788888888 555555533111 111111111 156788999
Q ss_pred CCCcEEEEEeCCCcEEEE--eCCCcc
Q 015484 370 NDPWVISSVADDNTVQVW--QMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw--~~~~~~ 393 (406)
++. ++++++. +.++|| ++.++.
T Consensus 304 ~~~-~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 304 NGL-IAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp TSC-EEEEEBS-SSCEEEEEETTTTE
T ss_pred CCE-EEEEEEc-CccEEEEEECCCCc
Confidence 988 7888888 999999 555443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-16 Score=140.81 Aligned_cols=244 Identities=9% Similarity=0.013 Sum_probs=152.3
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEE--ecCCCCCeEEE-------
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS--WSPFKEGYLVS------- 184 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s------- 184 (406)
+...+..+.|+|++ ..|+.++.++.|++||+.+... ...+..+...+.... +++++. +++.
T Consensus 79 ~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~ 148 (388)
T 3pe7_A 79 RGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEE--------NVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRRED 148 (388)
T ss_dssp SCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCE--------EEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGG
T ss_pred CCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcc--------eeeeechhhcccccceeECCCCC-eeccccccCcc
Confidence 34445578899999 5688888889999999987422 333444555454444 478777 6653
Q ss_pred ---------------ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEE
Q 015484 185 ---------------GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIW 243 (406)
Q Consensus 185 ---------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~ 243 (406)
...++.|.+||+.++.. ..+..+...+..++|+|.+++.++.+.. ...|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred cccccccchhhhhhccCCcceEEEEECCCCce-------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 23457899999987642 2233456678999999933455545443 3378888
Q ss_pred ECCCCcccccccccC--CCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCC-CcEEecCCCC---CeEEEEEcCC
Q 015484 244 DLRTNQTQQRVKAHE--KEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTV-PLHILSSHTE---EVFQVEWDPN 313 (406)
Q Consensus 244 d~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~-~~~~~~~h~~---~v~~i~~~p~ 313 (406)
|+..+.. ..+..+. ..+..++|+|+|+.+++++..++ .|++||+.+++. .+..+..+.. ....+.|+|+
T Consensus 222 d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 222 NEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp ETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred eCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 8876543 3332233 35778899999995544444333 399999987653 1222222100 0112379999
Q ss_pred CCCEEEEE--------eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----------CeeeEEeCCCCCcE
Q 015484 314 HETVLASS--------ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----------KISDFSWNKNDPWV 374 (406)
Q Consensus 314 ~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~~ 374 (406)
|+.++++. ..+..|.+||+.... +..+..+.. .+.+++|+|+|+++
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTE---------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCc---------------eEEeccccCcccccccccccCCCCccCCCCCCEE
Confidence 98755443 456789999997621 112222333 57889999999976
Q ss_pred EEEEeCCCcEEEEeCC
Q 015484 375 ISSVADDNTVQVWQMT 390 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~ 390 (406)
+.++..+|..+||.++
T Consensus 366 ~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 366 LFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEECTTSSCEEEEEE
T ss_pred EEEecCCCceeEEEEE
Confidence 6676678887777653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-14 Score=125.95 Aligned_cols=245 Identities=8% Similarity=-0.008 Sum_probs=168.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.+.....+++|+|++..+++++..++.|.+|+.... ...+..+...+.++++++++. ++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 456678899999999558889999999999998872 344556777899999999888 777777778999
Q ss_pred EEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEE----e-------------cCCcEEEEECCCCcccccc
Q 015484 193 LWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSA----G-------------DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~ 254 (406)
+||..++...... ..... ....+++++++| +++++++. + ..+.|..++.. ++ ...+
T Consensus 94 ~~d~~~g~~~~~~---~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 94 RQREPGGEWESIA---DSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp EECSTTCCEEEEE---CEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred EEcCCCCcEEEEe---eccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 9998765421111 11111 123467899998 67777763 2 13466666655 33 3333
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
..+....+.++|+|+++ .+++.+.++.|.+||+...... ...+..+...+.+++++++|. +.++. ++.|.+||
T Consensus 168 ~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLT 243 (296)
T ss_dssp ECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEEC
T ss_pred ecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEEC
Confidence 44556678999999999 5577777889999998732221 122233456678899999996 45544 88999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe-CCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW-NKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
... ..+..+..+.. +.+++| .|+++. |..++.+ .+.-+++.++.++.
T Consensus 244 ~~g---------------~~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 244 PDG---------------DELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp TTS---------------CEEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCBCCC
T ss_pred CCC---------------CEEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEcccccccc
Confidence 763 34445555666 899999 688884 5555554 45566666665543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=124.89 Aligned_cols=241 Identities=7% Similarity=-0.008 Sum_probs=166.6
Q ss_pred ceeEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 117 EVNRARCMPQKPNLVG-TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
...++++.|++ .+++ +.+.++.|.+|+...... ......+...+.++++++++. ++++.. ++.|.+||
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGT--------TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEEC
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCccc--------ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEe
Confidence 77899999998 5666 557788999998765211 111122335678999999887 666665 88999999
Q ss_pred CCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
...... ..+. .....+..+++++ +++++++...++.|.+|+..+.............+..+++++++. ++
T Consensus 94 ~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 164 (270)
T 1rwi_B 94 AGSNNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY 164 (270)
T ss_dssp TTCSCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred CCCceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence 875422 1111 2225688999998 567887777888999998665443222222334678899999998 77
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
++...++.|.+||...... ......+...+.++++++++ .++++...++.|.+|+..... ....
T Consensus 165 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------~~~~ 228 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT--------------STVL 228 (270)
T ss_dssp EEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC--------------CEEC
T ss_pred EEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc--------------ceee
Confidence 7777778999999876432 22222333678999999998 477777778999999986521 1111
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+...+.+++++++|. ++++...++.|+++++.....
T Consensus 229 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence 122335689999999998 888888899999999887654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-14 Score=132.64 Aligned_cols=243 Identities=8% Similarity=0.037 Sum_probs=147.7
Q ss_pred EEEEeCC--CeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC-CccCCceee
Q 015484 131 VGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS-ALAQDKVID 206 (406)
Q Consensus 131 l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~ 206 (406)
+++|+.. +.|.+|++..... ......... .....+..++|+|+++ +|++++.+ .|.+|++. +++. .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g----~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~----~ 74 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKL----TCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEI----V 74 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTT----EEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEE----E
T ss_pred EEEEEccCCCcEEEEEEECCCC----CEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCE----E
Confidence 4555543 5688887643211 111111111 2334678999999998 88888887 99999986 4422 1
Q ss_pred eeeeeeccCccEEEEEeeCCCCC--EEEEEe-------------cCCcEEEEECCC-Cccccccc----ccCCCeeEEEe
Q 015484 207 AMHVYEAHESVVEDVSWHLKNEN--LFGSAG-------------DDCQLMIWDLRT-NQTQQRVK----AHEKEVNYLSF 266 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~-------------~dg~i~i~d~~~-~~~~~~~~----~~~~~v~~i~~ 266 (406)
.......+ +.+..++|+|+ ++ +++++. .+|.+.+|++.. ++....+. .+...+.+++|
T Consensus 75 ~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 75 HEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp EEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred EeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 11111111 23556899994 55 344443 689999999974 55433332 24567899999
Q ss_pred cCCCCcEEEEEe-CCCcEEEEeCC-CCCCC-cEEec--CCCCCeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCCC-Cccc
Q 015484 267 NPYNEWVLATAS-SDTTVALFDMR-KMTVP-LHILS--SHTEEVFQVEWDPNHETVLASSA-DDRRLMVWDLNRI-GDEQ 339 (406)
Q Consensus 267 ~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~-~~~~~--~h~~~v~~i~~~p~~~~~l~s~~-~dg~i~iwd~~~~-~~~~ 339 (406)
+|+|+ +|+++. .++.|++||+. +++.. +..+. .|...+..++|+|+++. |++++ .++.|.+|++... +...
T Consensus 153 spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 153 DPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY-LYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp CTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE-EEEEECCCCeEEEEEEeCCCCcEE
Confidence 99998 566554 46799999998 44321 22233 24567999999999985 55544 5789999987531 1100
Q ss_pred ccccccCCCCeeEEEe----cCCCC------CeeeEE-eCCCCCcEEEEEeCCC-----cEEEEeCC-Cccc
Q 015484 340 LELDAEDGPPELLFSH----GGHKA------KISDFS-WNKNDPWVISSVADDN-----TVQVWQMT-DSIY 394 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~----~~h~~------~v~~~~-~s~~~~~~l~s~~~dg-----~i~iw~~~-~~~~ 394 (406)
.. ...+... .+|.. .+..++ |+|+|++++++...++ .|.+|++. ++.+
T Consensus 231 ~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 231 YT-------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp EE-------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred Ec-------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE
Confidence 00 0001111 12222 488999 9999996544443333 89999996 4443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-13 Score=122.38 Aligned_cols=236 Identities=8% Similarity=0.020 Sum_probs=157.4
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD--- 188 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--- 188 (406)
..+...+.+++|+|++ .+++++..++.|.+|+...... ......+...+.+++|++++. ++++...+
T Consensus 41 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~ 110 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI--------KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKS 110 (333)
T ss_dssp ESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE--------EEEEECSSSSEEEEEECTTSC-EEEEECTTSSS
T ss_pred eccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE--------EEEeeCCCCCcceEEECCCCc-EEEEeCCCCCC
Confidence 3466778999999998 5777888899999999876321 122224567899999999987 77776666
Q ss_pred -CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCe
Q 015484 189 -NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEV 261 (406)
Q Consensus 189 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v 261 (406)
+.|.+||..++.....+ . .......+.+++++| +++++++... .+.|..+|..+++.. .+......+
T Consensus 111 ~~~i~~~d~~~~~~~~~~---~-~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 184 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDII---E-DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVA 184 (333)
T ss_dssp CCEEEEECTTSCSCEEEE---C-SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSE
T ss_pred CceEEEEeCCCCEEEEEE---c-cCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcc
Confidence 68999998775431111 0 012345789999998 5677766553 356777776654432 222233457
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--------ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--------LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
..++|+|++..++++.+.++.|.+||+......+.. +..+ ..+..+++++++. ++++...++.|.+||..
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence 899999999845555566789999999642221211 1122 4678899999996 67777778999999974
Q ss_pred CCCcccccccccCCCCeeEEEecC------CCCCeeeEEeCCCCCcEEEEEeC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGG------HKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
. ..+..+.. |...+.+++|+|++..+++++..
T Consensus 263 g---------------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 263 G---------------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp S---------------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred C---------------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 3 22222222 22368999999998755555543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=146.71 Aligned_cols=237 Identities=11% Similarity=-0.001 Sum_probs=152.2
Q ss_pred EEEEc--CCCCc-EEEEEeCCCeEEEEeCC--C-ccccccCCCCCceeeeC-----CCCCeeEEEecCCCCCeEEEecCC
Q 015484 120 RARCM--PQKPN-LVGTKTSSCEVYVFDCA--K-QAEKQQDDCDPDLRLKG-----HDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 120 ~i~~~--p~~~~-~l~~~~~dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|+ |++.. ++++...+..|+++++. . .. ...+.. |...+.+++|+|+|+ .|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---------~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~ 150 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---------PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEE 150 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---------CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---------CEeccCCccCCCCccccCcEECCCCC-EEEEEEec
Confidence 45555 99965 44444446677777765 1 11 233333 566788999999998 88888776
Q ss_pred ----------CeEEEEeCCC------ccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC--------CcEEEE
Q 015484 189 ----------NKICLWDVSA------LAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD--------CQLMIW 243 (406)
Q Consensus 189 ----------g~i~iwd~~~------~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~ 243 (406)
..|.+||+.+ +.. ..+. .+...+..++|+| +++.|+.++.+ ..|++|
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-------RELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-------EESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-------eEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEE
Confidence 5899999987 322 2223 4456788899999 66777666644 379999
Q ss_pred ECC-CC---cccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCC---------eEEE
Q 015484 244 DLR-TN---QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEE---------VFQV 308 (406)
Q Consensus 244 d~~-~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~---------v~~i 308 (406)
|+. ++ +.......+...+..++|+|+|+ +++++..++ .|.+||+..+. ...+..+... +..+
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSE
T ss_pred EECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceE
Confidence 998 56 33333344567899999999999 888888888 56666664433 3333322221 5678
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE-EeCCCCCcEEEEEeCCCc--EE
Q 015484 309 EWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF-SWNKNDPWVISSVADDNT--VQ 385 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~~l~s~~~dg~--i~ 385 (406)
+|+|++. ++++++. +.++||.+.... ..+..+..|...+..+ +++++.- ++++++.+.. |.
T Consensus 300 ~~~~~~~-~~~~~~~-~~~~l~~~d~~~-------------~~~~~l~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 300 APLANGL-IAVVHGK-GAAVLGILDPES-------------GELVDAAGPWTEWAATLTVSGTRA-VGVAASPRTAYEVV 363 (662)
T ss_dssp EECTTSC-EEEEEBS-SSCEEEEEETTT-------------TEEEECCSSCCEEEEEEEEETTEE-EEEEEETTEEEEEE
T ss_pred eEeCCCE-EEEEEEc-CccEEEEEECCC-------------CcEEEecCCCCeEEEEEecCCCEE-EEEEcCCCCCCEEE
Confidence 8999886 7888888 999999543211 1133445566667666 4443322 4444555544 55
Q ss_pred EEeCCCcc
Q 015484 386 VWQMTDSI 393 (406)
Q Consensus 386 iw~~~~~~ 393 (406)
+|++.++.
T Consensus 364 ~~d~~~g~ 371 (662)
T 3azo_A 364 ELDTVTGR 371 (662)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 55665654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=130.85 Aligned_cols=247 Identities=11% Similarity=0.083 Sum_probs=167.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.+++|+|++ ..++..+.++.++.|.-.. ...+..+...+.+++|++++. +++++..++.|.+||
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d 72 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTITAEP-----------WLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKIN 72 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEEECEE-----------EEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEEC
T ss_pred cccceeeecCCc-cceeEEeecccCcccccce-----------eEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEe
Confidence 457888999987 4455557788888883222 455666777789999999887 888888899999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----CcEEEEECCCCccccccc--ccCCCeeEEEecCC
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----CQLMIWDLRTNQTQQRVK--AHEKEVNYLSFNPY 269 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~i~~~~~ 269 (406)
..++... .....+...+.+++++| +++++++...+ +.|.+||..++.....+. .....+..++++|+
T Consensus 73 ~~~~~~~------~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 73 PETKEIK------RPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp TTTCCEE------EEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred CCCCcEE------EEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence 8765321 11123456799999998 56777776666 689999998776532221 23457899999999
Q ss_pred CCcEEEEEeC------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 270 NEWVLATASS------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 270 ~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+. ++++... .+.|..+|..... +..+..+...+..++|+|+++.++++.+.++.|.+||+...+.......
T Consensus 146 g~-l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~ 222 (333)
T 2dg1_A 146 GG-FYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG 222 (333)
T ss_dssp SC-EEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred CC-EEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc
Confidence 98 6665543 2456666655422 3333333446889999999976566666788999999864221110000
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
........++ ..+..++++++|. ++++...++.|.+|+....
T Consensus 223 -----~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 223 -----ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp -----EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC
T ss_pred -----ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCC
Confidence 0111122222 4578899999998 6777777889999998644
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-14 Score=140.68 Aligned_cols=250 Identities=9% Similarity=-0.009 Sum_probs=162.6
Q ss_pred cCCceeEEEEcCCCCcEEEEEeC-CC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTS-SC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|+|. +||.+.. .| .|++||+.+..... ..+.. ..+.+++|+|+|+ .|+.++.+
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~-------~~~~~--~~~~~~~wspDg~-~l~~~~~~ 191 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELP-------DVLER--VKFSCMAWTHDGK-GMFYNAYP 191 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEE-------EEEEE--ECSCCEEECTTSS-EEEEEECC
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCc-------ccccC--cccceEEEEeCCC-EEEEEEEC
Confidence 334688999999995 5665544 33 89999998743211 11221 2267899999998 78777776
Q ss_pred Ce----------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-----CCcEEEEECCC
Q 015484 189 NK----------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-----DCQLMIWDLRT 247 (406)
Q Consensus 189 g~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg~i~i~d~~~ 247 (406)
+. |++|++.++..... .+.....+...+..+.|+| +++.|+.++. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcc
Confidence 65 99999987643211 1111222455678899999 5565555543 56899999986
Q ss_pred ------Cc-ccccccccCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCC-CcEEecCCCC--CeEEEEEcCCC
Q 015484 248 ------NQ-TQQRVKAHEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTV-PLHILSSHTE--EVFQVEWDPNH 314 (406)
Q Consensus 248 ------~~-~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~h~~--~v~~i~~~p~~ 314 (406)
+. ....+..+...+.. .|+|+|..+++.+..+ +.|.+||+.+... ....+..|.. .+..+.|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 43 34555555555544 4888888444444433 3699999987541 1345555544 68889999665
Q ss_pred CCEEEEEeCCCc--EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeC
Q 015484 315 ETVLASSADDRR--LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQM 389 (406)
Q Consensus 315 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~ 389 (406)
.++++...|+. |.+|++... ..+..+..+...+..++++|++..++++.+. .+.|.+||+
T Consensus 348 -~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 348 -FLVLCYLHDVKNTLQLHDLATG--------------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp -EEEEEEEETTEEEEEEEETTTC--------------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred -EEEEEEEECCEEEEEEEECCCC--------------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 47888888885 455565331 2233444556678899999998755555443 478999999
Q ss_pred CCcc
Q 015484 390 TDSI 393 (406)
Q Consensus 390 ~~~~ 393 (406)
.++.
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-14 Score=127.23 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=139.0
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeEEEEeCCCccCCcee
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~ 205 (406)
.|+.|++||..+. +....+..+..+ .++|+|+++ +++++. .++.|.+||+.+.+....+
T Consensus 29 ~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 3779999998763 234556555544 899999998 777775 3678999998875432222
Q ss_pred eeeeeeeccCccEEEEEeeCCCCCEEEEEec--CCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEEEeCCCc
Q 015484 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAGD--DCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASSDTT 282 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~dg~ 282 (406)
........+......++++| ++++++++.. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.
T Consensus 98 ~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp EECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSS
T ss_pred EcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCc
Confidence 11000000224567789999 5666666553 68999999999887766 5321 11223445544334555555555
Q ss_pred EEEEeCCCCCCCc-------------------------------------------------EEecC------C----CC
Q 015484 283 VALFDMRKMTVPL-------------------------------------------------HILSS------H----TE 303 (406)
Q Consensus 283 i~vwd~~~~~~~~-------------------------------------------------~~~~~------h----~~ 303 (406)
+.+|++....... ..+.. + ..
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 5555543211100 00000 0 00
Q ss_pred CeEEEEEcCCCCCEEEEEeC----------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 304 EVFQVEWDPNHETVLASSAD----------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
....++|+|+++.++++... .+.|.+||+.+ .+.+..+..+. +.+++|+|+|+
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--------------~~~v~~i~~~~--p~~ia~spdg~- 317 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--------------KQRVARIPGRD--ALSMTIDQQRN- 317 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--------------TEEEEEEECTT--CCEEEEETTTT-
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--------------CcEEEEEecCC--eeEEEECCCCC-
Confidence 01126788888765555441 34799999876 45666666665 99999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 015484 374 VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~ 392 (406)
+|++++. +.|.+||+.++
T Consensus 318 ~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEEECS-SCEEEEECSSS
T ss_pred EEEEeCC-CeEEEEECCCC
Confidence 5666665 99999999988
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-15 Score=134.86 Aligned_cols=240 Identities=12% Similarity=0.121 Sum_probs=149.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCCC-eeEEEecCCCCCeEEEecCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKE-GYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
..+..++|+|+|..++++...+ ..|.+|++..... ..+..+... ...+.|+|+++ .|+.++.++.|.
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~---------~~l~~~~~~~~~~~~~spdg~-~l~~~~~~~~l~ 105 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA---------VQLTEGKGDNTFGGFISTDER-AFFYVKNELNLM 105 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE---------EECCCSSCBCTTTCEECTTSS-EEEEEETTTEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE---------EEeecCCCCccccceECCCCC-EEEEEEcCCcEE
Confidence 3477889999996444444333 3688888876321 222223333 33478999998 898888889999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEE-------------------EEeeCCCCCEEEEE-----ecCCcEEEEECCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVED-------------------VSWHLKNENLFGSA-----GDDCQLMIWDLRTN 248 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~-------------------i~~~p~~~~~l~~~-----~~dg~i~i~d~~~~ 248 (406)
+||+.++.... ....+...... +.|+|+ ++.++.+ ..+..|.+||+.++
T Consensus 106 ~~d~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 106 KVDLETLEEQV------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp EEETTTCCEEE------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EEECCCCCcEE------EEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCC
Confidence 99998754211 11112222222 356663 4443332 35668999999887
Q ss_pred cccccccccCCCeeEEEecC-CCCcEEEEEeCC------CcEEEEeCCCCCCCcEEecCCC--CCeEEEEEcCCCCCEEE
Q 015484 249 QTQQRVKAHEKEVNYLSFNP-YNEWVLATASSD------TTVALFDMRKMTVPLHILSSHT--EEVFQVEWDPNHETVLA 319 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~h~--~~v~~i~~~p~~~~~l~ 319 (406)
+..... .+...+..+.|+| ++. .|+..+.+ ..|.+||+.... ...+..+. ..+..+.|+|+++.+++
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred cEEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEE
Confidence 754333 4567789999999 676 55554443 368888986543 33333332 35788999999986444
Q ss_pred EEeCC----CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEe---------------
Q 015484 320 SSADD----RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVA--------------- 379 (406)
Q Consensus 320 s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~--------------- 379 (406)
++..+ +.|.+||+..... ..+....+ .. +.|+| +|+ ++++++
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~----~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLEN------------EEVMVMPP----CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCE------------EEEEECCS----EE-EEEECSSSS-EEEEEECCC----------CC
T ss_pred EecCCCCccceEEEEECCCCCe------------EEeeeCCC----CC-CCccCCCCc-eEEEecCCcceeecccccccc
Confidence 43332 4499999876221 12222221 22 89999 999 455543
Q ss_pred -CCCcEEEEeCCCccc
Q 015484 380 -DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 -~dg~i~iw~~~~~~~ 394 (406)
.++.|.+|++.++..
T Consensus 317 ~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CCCCEEEEEETTTTBC
T ss_pred CCCCcEEEEecccCce
Confidence 347899999987754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=131.65 Aligned_cols=239 Identities=8% Similarity=0.037 Sum_probs=144.8
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeE-------------------EEecCCCCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYG-------------------LSWSPFKEG 180 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~ 180 (406)
.+.|+|++ ..|+.++.++.|++|++..... ......+...... +.|+|+++
T Consensus 85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~--------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~- 154 (396)
T 3c5m_A 85 GGFISTDE-RAFFYVKNELNLMKVDLETLEE--------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS- 154 (396)
T ss_dssp TCEECTTS-SEEEEEETTTEEEEEETTTCCE--------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-
T ss_pred cceECCCC-CEEEEEEcCCcEEEEECCCCCc--------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-
Confidence 47899999 5788888888999999987422 2222223322222 35677776
Q ss_pred eEEEe-----cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCc
Q 015484 181 YLVSG-----SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQ 249 (406)
Q Consensus 181 ~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~ 249 (406)
.++.+ ..+..|.+||+.++.. ..+..+...+..+.|+|.++..|+.++.+ ..|.+||+..++
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ceeeeeeccCCCcceEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 55443 3567899999987542 11223566788999999445544444433 468899987655
Q ss_pred cccccccc-CCCeeEEEecCCCCcEEEEEeCC----CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC-CCCCEEEEEe-
Q 015484 250 TQQRVKAH-EKEVNYLSFNPYNEWVLATASSD----TTVALFDMRKMTVPLHILSSHTEEVFQVEWDP-NHETVLASSA- 322 (406)
Q Consensus 250 ~~~~~~~~-~~~v~~i~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~~- 322 (406)
........ ...+..++|+|+++.+++++..+ +.|++||+.++.. ..+.... ... +.|+| +++ ++++++
T Consensus 228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~-~~~-~~~s~~dg~-~l~~~~~ 302 (396)
T 3c5m_A 228 VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP-PCS-HLMSNFDGS-LMVGDGC 302 (396)
T ss_dssp CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC-SEE-EEEECSSSS-EEEEEEC
T ss_pred eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC-CCC-CCccCCCCc-eEEEecC
Confidence 33222211 23578899999998444433322 3499999987542 2222112 233 89999 997 566544
Q ss_pred ---------------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----------CeeeEEeCCCCCcEEE
Q 015484 323 ---------------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----------KISDFSWNKNDPWVIS 376 (406)
Q Consensus 323 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~~l~ 376 (406)
.++.|.+||+..... ..+. .+.. .+..++|+|+|+++++
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~------------~~l~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSA------------QKLC---KHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBC------------CEEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred CcceeeccccccccCCCCcEEEEecccCce------------EEcc---CCCCccccccccccCCCCCceEccCCCeEEE
Confidence 347899999875221 1111 1222 2567899999996555
Q ss_pred EEeCCCcEEEEe--CCCcccC
Q 015484 377 SVADDNTVQVWQ--MTDSIYR 395 (406)
Q Consensus 377 s~~~dg~i~iw~--~~~~~~~ 395 (406)
++..++...||. +.++...
T Consensus 368 ~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 368 TSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EECTTSSCEEEEEECCTTCC-
T ss_pred EecCCCCceEEEEEEcccccc
Confidence 555566666665 4454443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-14 Score=138.66 Aligned_cols=249 Identities=6% Similarity=-0.091 Sum_probs=159.3
Q ss_pred cCCceeEEEEcCCCCcEEE-----EEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVG-----TKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~-----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|+|. +|| .|+.+.+|++||+.++.... ...+... ....++|+|+|+ .|+.++.|
T Consensus 119 ~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~--~~~~~~wspDg~-~l~~~~~d 188 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGG--KYATPKWTPDSK-GFYYEWLP 188 (695)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCC--TTCCCEECTTSS-EEEEEECC
T ss_pred CCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcc--cccceEEecCCC-EEEEEEec
Confidence 555789999999995 565 33334689999998843210 0011111 126889999998 88888877
Q ss_pred Ce-------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEEEECCCCccc
Q 015484 189 NK-------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMIWDLRTNQTQ 251 (406)
Q Consensus 189 g~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~ 251 (406)
.. |++|++.++..... .+.....+...+..+.|+|++ +.++.++.++ .|.++|..+++ .
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-~ 264 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-F 264 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-C
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce--EEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-e
Confidence 66 99999987653211 122223345678899999954 5555555444 67777665544 3
Q ss_pred ccccccCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCC-CcEEecCC--CCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 252 QRVKAHEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTV-PLHILSSH--TEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 252 ~~~~~~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
..+..+...+....+ +++. +++.+. .++.|.+||+.++.. ....+..+ ...+..++|+ ++ .++++...|+
T Consensus 265 ~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg 340 (695)
T 2bkl_A 265 RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDA 340 (695)
T ss_dssp EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETT
T ss_pred EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECC
Confidence 444445555666666 5676 666655 257899999976542 12334333 4457888888 44 5889999999
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCcc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSI 393 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~ 393 (406)
..+||.+...+ .....+..+ ...|..++++|+++.++++.+. .+.|++||+.++.
T Consensus 341 ~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 341 TSEVRVATLKG-------------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTC-------------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEEeCCC-------------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 98888765311 122222333 5568889999998755544433 4679999998764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=118.84 Aligned_cols=207 Identities=13% Similarity=0.186 Sum_probs=144.7
Q ss_pred CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEE
Q 015484 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMI 242 (406)
Q Consensus 164 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i 242 (406)
++-....++++++++. ++++...++.|.+||... .....+........+...+..+++.+.++.++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3445688999999887 888888899999999763 2111111000001233568899995436677766643 889999
Q ss_pred EECCCCccccccc-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEE
Q 015484 243 WDLRTNQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 243 ~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~ 319 (406)
|| .+++.+..+. .+...+..++++|++. ++++...++.|.+||... . .+..+. .+...+..++++|+++ +++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v 179 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQE-IFI 179 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSE-EEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCC-EEE
Confidence 99 5566555553 2345688999999998 777777788999999653 2 233432 3445789999999986 777
Q ss_pred EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCCC-cEEEEeCCCcc
Q 015484 320 SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADDN-TVQVWQMTDSI 393 (406)
Q Consensus 320 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~dg-~i~iw~~~~~~ 393 (406)
+...++.|.+||... ..+..+. ++...+..++++++|. ++++...++ .|.+|+.....
T Consensus 180 ~~~~~~~i~~~~~~g---------------~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp EEGGGTEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE
T ss_pred EECCCCEEEEEcCCC---------------CEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCE
Confidence 778899999999753 2233332 2335788999999998 777777775 99999976543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-12 Score=110.98 Aligned_cols=242 Identities=7% Similarity=-0.021 Sum_probs=166.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.+...+.++++.+++ .+.++...++.|.+|+... ... ...+..+...+.++++.+++. ++++...++.|.
T Consensus 12 ~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~-~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~ 81 (299)
T 2z2n_A 12 NQDTGPYGITVSDKG-KVWITQHKANMISCINLDG-KIT-------EYPLPTPDAKVMCLTISSDGE-VWFTENAANKIG 81 (299)
T ss_dssp SSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEE-------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred CcCCCccceEECCCC-CEEEEecCCCcEEEEcCCC-CeE-------EecCCcccCceeeEEECCCCC-EEEeCCCCCeEE
Confidence 345789999999998 5666655578899999872 111 111223456789999999887 777777688999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~ 271 (406)
.|+... . +.. .........+..+++.+ ++.++++...++.|..||. +++.... .......+..+++++++.
T Consensus 82 ~~~~~g-~----~~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 82 RITKKG-I----IKE-YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA 153 (299)
T ss_dssp EECTTS-C----EEE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC
T ss_pred EECCCC-c----EEE-EeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC
Confidence 999752 1 111 11112345788999998 5778877777889999998 4443221 222345688999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
++++...++.|..||. ++.........+...+.++++++++. +.++...++.|.+||. ... ..
T Consensus 154 -l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~-------------~~ 216 (299)
T 2z2n_A 154 -LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGE-------------IT 216 (299)
T ss_dssp -EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCC-------------EE
T ss_pred -EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCc-------------EE
Confidence 7776666789999998 43321111333456789999999986 6666667889999998 311 11
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
......+...+.+++++++|. ++++...++.|..|+..
T Consensus 217 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT
T ss_pred EEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC
Confidence 112233456789999999998 67776667889999984
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-14 Score=140.07 Aligned_cols=201 Identities=10% Similarity=0.125 Sum_probs=129.9
Q ss_pred eEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 119 NRARCMPQKPNLVGTKTSS---------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
..++|+|++ ..|+.++.+ +.+.+||+.+... ..+..|...+...+|||+|+ .||.+ .++
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~---------~~l~~~~~~~~~~~~SPdG~-~la~~-~~~ 132 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQL---------ITEERIPNNTQWVTWSPVGH-KLAYV-WNN 132 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEE---------CCSSCCCTTEEEEEECSSTT-CEEEE-ETT
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcE---------EEcccCCCcceeeEECCCCC-EEEEE-ECC
Confidence 458899999 467777765 5678999988432 23556777899999999999 88877 468
Q ss_pred eEEEEeCCCccCCceeee----eeeeeccC---------ccEEEEEeeCCCCCEEEEEecC-C-----------------
Q 015484 190 KICLWDVSALAQDKVIDA----MHVYEAHE---------SVVEDVSWHLKNENLFGSAGDD-C----------------- 238 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~----~~~~~~~~---------~~i~~i~~~p~~~~~l~~~~~d-g----------------- 238 (406)
.|.+|++.++... .+.. ...+.++. .....+.|+| +++.|+.++.| +
T Consensus 133 ~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~ 210 (740)
T 4a5s_A 133 DIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQY 210 (740)
T ss_dssp EEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred eEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCC
Confidence 9999999876432 1100 00111111 1123588999 56666665422 1
Q ss_pred ------------------cEEEEECCC---Ccc--ccccc------ccCCCeeEEEecCCCCcEEEEEeC----CCcEEE
Q 015484 239 ------------------QLMIWDLRT---NQT--QQRVK------AHEKEVNYLSFNPYNEWVLATASS----DTTVAL 285 (406)
Q Consensus 239 ------------------~i~i~d~~~---~~~--~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~v 285 (406)
.|++||+.+ ++. ...+. .+...+..++|+|+|+ +++.... +..|.+
T Consensus 211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~ 289 (740)
T 4a5s_A 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDI 289 (740)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEE
T ss_pred CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEE
Confidence 588899988 631 22232 3677799999999998 5554432 237999
Q ss_pred EeCCCCC----CC-cEEe--cCCCCCeE-----EEEEcCCCCCEEEEEe-CCC--cEEEEeCCC
Q 015484 286 FDMRKMT----VP-LHIL--SSHTEEVF-----QVEWDPNHETVLASSA-DDR--RLMVWDLNR 334 (406)
Q Consensus 286 wd~~~~~----~~-~~~~--~~h~~~v~-----~i~~~p~~~~~l~s~~-~dg--~i~iwd~~~ 334 (406)
||+.++. +. +..+ ..|...|. ...|+|+|+.+++..+ .+| .|.+||+..
T Consensus 290 ~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 9998765 11 1222 44555544 7889999986542554 444 577777764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-13 Score=122.01 Aligned_cols=223 Identities=12% Similarity=0.141 Sum_probs=141.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---C--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC---
Q 015484 116 GEVNRARCMPQKPNLVGTKTSS---C--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH--- 187 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--- 187 (406)
..+..++|+|+|. .||..+.+ + .|++|++..... ..+..+.. +.+++|+|+++ .|+.++.
T Consensus 59 ~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~---------~~l~~~~~-~~~~~wspdg~-~l~~~~~~~~ 126 (347)
T 2gop_A 59 ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSS---------KKILEAKN-IRSLEWNEDSR-KLLIVGFKRR 126 (347)
T ss_dssp ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEE---------EEEEEESE-EEEEEECTTSS-EEEEEEECCC
T ss_pred ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCce---------EEEEcCCC-ccceeECCCCC-EEEEEEccCC
Confidence 5688999999995 56555543 3 477778765321 22222233 89999999998 7776653
Q ss_pred ------------------------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----
Q 015484 188 ------------------------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----- 238 (406)
Q Consensus 188 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----- 238 (406)
...|.+||+.++... . .+.. . .+..++|+|+ + +++++..++
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~---~---~l~~-~-~~~~~~~spd-g-~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI---E---EFEK-P-RFSSGIWHRD-K-IVVNVPHREIIPQY 196 (347)
T ss_dssp C---------CCCC---------CEEEEEEEETTTTEEE---E---EEEE-E-TTCEEEEETT-E-EEEEEECCCSSCCS
T ss_pred CcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE---e---eecC-C-CcccccCCCC-e-EEEEEecccccccc
Confidence 257889998775321 1 1222 2 6788999994 5 776665442
Q ss_pred --cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEE-
Q 015484 239 --QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQ- 307 (406)
Q Consensus 239 --~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~- 307 (406)
...+|.+.+++ ...+..+ ..+..+ +|+|+ .|+.++.+ ..|.+|| + .........+...+..
T Consensus 197 ~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~ 268 (347)
T 2gop_A 197 FKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQA 268 (347)
T ss_dssp SCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEE
T ss_pred cccccEEEeCCCc-eEEeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCc
Confidence 33444444443 3334333 444444 89998 55555533 3688888 3 2323334455677886
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE-EE
Q 015484 308 VEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV-QV 386 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i-~i 386 (406)
+.|+ ++ ++++++.++.++|| +.. + .... ...+...|.+++|+| . ++++++.++.. .|
T Consensus 269 ~~~s-dg--~~~~~~~~~~~~l~-~~~-g-------------~~~~-~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l 326 (347)
T 2gop_A 269 KIKD-GK--VYFTLFEEGSVNLY-IWD-G-------------EIKP-IAKGRHWIMGFDVDE--I-VVYLKETATRLREL 326 (347)
T ss_dssp EEET-TE--EEEEEEETTEEEEE-EES-S-------------SEEE-EECSSSEEEEEEESS--S-EEEEEECSSSCCEE
T ss_pred cEEc-Cc--EEEEEecCCcEEEE-EcC-C-------------ceEE-EecCCCeEEeeeeeC--c-EEEEEcCCCChHHh
Confidence 9999 76 78899999999999 863 2 1111 223466789999999 4 67777767665 78
Q ss_pred EeCC
Q 015484 387 WQMT 390 (406)
Q Consensus 387 w~~~ 390 (406)
|.+.
T Consensus 327 ~~~~ 330 (347)
T 2gop_A 327 FTWD 330 (347)
T ss_dssp EEES
T ss_pred eEeC
Confidence 8775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=115.59 Aligned_cols=246 Identities=9% Similarity=0.051 Sum_probs=160.8
Q ss_pred cCCceeEEEEcCCCCcEEEE-------EeCCCeEEEEeCCCccccccCCCCCceeee-----CCCCCeeEEEecCC-CCC
Q 015484 114 VDGEVNRARCMPQKPNLVGT-------KTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-----GHDKEGYGLSWSPF-KEG 180 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~-~~~ 180 (406)
.-....+++|.+++ .++++ +..++.|.+|+..+... ..+. ++...+.+++++++ +.
T Consensus 16 ~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~~~~i~~~~~~g~- 84 (314)
T 1pjx_A 16 DIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKK---------TVICKPEVNGYGGIPAGCQCDRDANQ- 84 (314)
T ss_dssp CCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCE---------EEEECCEETTEECCEEEEEECSSSSE-
T ss_pred cCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcE---------EEEEecccCCCCCCCceEEEecCCCc-
Confidence 34567899999888 56666 56788999999766321 1122 24467889999998 54
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecC---------------CcEEEEE
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDD---------------CQLMIWD 244 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~d---------------g~i~i~d 244 (406)
++++. ..+.|.+||.. +... .+. ..... .....+.++++++ +++++++...+ +.|..+|
T Consensus 85 l~v~~-~~~~l~~~d~~-g~~~-~~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 85 LFVAD-MRLGLLVVQTD-GTFE-EIA-KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEEEE-TTTEEEEEETT-SCEE-ECC-SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEEEE-CCCCEEEEeCC-CCEE-EEE-eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence 44444 44578899987 4321 110 00000 1124578999998 56777766554 5677787
Q ss_pred CCCCcccccccccCCCeeEEEec----CCCCcEEEEEeCCCcEEEEeCC-CCCC----CcEEecCCC-CCeEEEEEcCCC
Q 015484 245 LRTNQTQQRVKAHEKEVNYLSFN----PYNEWVLATASSDTTVALFDMR-KMTV----PLHILSSHT-EEVFQVEWDPNH 314 (406)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~~~~~dg~i~vwd~~-~~~~----~~~~~~~h~-~~v~~i~~~p~~ 314 (406)
.. ++.. .+.........++++ |+++.++++...++.|.+||+. .+.. ....+..+. ..+..+++++++
T Consensus 160 ~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 160 TD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp TT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC
Confidence 65 4432 222233456889999 9987455555667899999976 2211 122333333 568899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
. ++++...++.|.+||..+.. .+.....+...+.+++|+|++..++++...++.|..|++...
T Consensus 238 ~-l~v~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 238 N-LLVANWGSSHIEVFGPDGGQ--------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C-EEEEEETTTEEEEECTTCBS--------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred C-EEEEEcCCCEEEEEcCCCCc--------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 6 67777778999999986411 112223345679999999999866666666789999998753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=119.28 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=134.5
Q ss_pred EEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccCCCCCceeeeC------CCCCeeEEEecCCCCCeEE
Q 015484 120 RARCMPQKPNLVGTKT----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKG------HDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~ 183 (406)
.++|+|+++ ++.++. .++.|.+||..+. +....+.. +......++++|+|+ +|+
T Consensus 54 ~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--------~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l~ 123 (361)
T 2oiz_A 54 HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKL--------TFEKEISLPPKRVQGLNYDGLFRQTTDGK-FIV 123 (361)
T ss_dssp EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTC--------CEEEEEEECTTBCCBCCCGGGEEECTTSS-EEE
T ss_pred ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCC--------cEEEEEEcCccccccCCCcceEEECCCCC-EEE
Confidence 899999995 455544 3667999998763 22333332 234567899999998 887
Q ss_pred EecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------------------------
Q 015484 184 SGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------------------------ 237 (406)
Q Consensus 184 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------------------------ 237 (406)
++.. +++|.+||+.+++....+ +. .. ....+.+.|.+...+++.+.|
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~-----i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~ 196 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDV-----TA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEE-----GG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred EECCCCCCeEEEEECCCCcEEEEE-----ec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence 7753 689999999886432220 11 00 111122333222333333444
Q ss_pred ------------------------CcEEEEECCCCccc--ccccc------c----CCCeeEEEecCCCCcEEEEEe---
Q 015484 238 ------------------------CQLMIWDLRTNQTQ--QRVKA------H----EKEVNYLSFNPYNEWVLATAS--- 278 (406)
Q Consensus 238 ------------------------g~i~i~d~~~~~~~--~~~~~------~----~~~v~~i~~~~~~~~~l~~~~--- 278 (406)
+.+.++|+...... ..+.. . ......++++|++..++++..
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 44444444322210 00000 0 011112688998884555443
Q ss_pred -------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 279 -------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 279 -------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
..+.|.+||+.+.+. +..+..+. +.+++|+|+++ +|++++. +.|.+||..+.. .+.
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~------------l~~ 339 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPE------------PKL 339 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSS------------CEE
T ss_pred CcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCc------------cee
Confidence 134799999998664 77777766 99999999998 5667766 999999998721 155
Q ss_pred EEEecCCCCCeeeEEeCCCCC
Q 015484 352 LFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~ 372 (406)
+..+..+......++++|+|.
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 556555666788999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=117.23 Aligned_cols=207 Identities=13% Similarity=0.104 Sum_probs=147.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee---------eCCCCCeeEEEecC-CCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL---------KGHDKEGYGLSWSP-FKEGYLV 183 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~-~~~~~l~ 183 (406)
+-..+..+++.|++ .++++...++.|++|+.... ......+ .++-....+|+++| ++. +++
T Consensus 89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~-------~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv 159 (329)
T 3fvz_A 89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSK-------EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFV 159 (329)
T ss_dssp TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCS-------SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEE
T ss_pred ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCC-------eEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEE
Confidence 34578999999999 58888888999999998652 1123333 23445688999999 565 777
Q ss_pred Eec-CCCeEEEEeCCCccCCceeeeeeee----eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cc
Q 015484 184 SGS-HDNKICLWDVSALAQDKVIDAMHVY----EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KA 256 (406)
Q Consensus 184 s~~-~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~ 256 (406)
+.+ .++.|++|+.. +.....+.....- ..+-.....++++|+++.++++...++.|++||..+++.+..+ ..
T Consensus 160 ~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 68999999943 3211111000000 0112347899999955888888889999999999988877666 34
Q ss_pred cCCCeeEEEecCCCCcEEEEE-------eCCCcEEEEeCCCCCCCcEEe---cCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 257 HEKEVNYLSFNPYNEWVLATA-------SSDTTVALFDMRKMTVPLHIL---SSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 257 ~~~~v~~i~~~~~~~~~l~~~-------~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
+...+..++++| +- ++++. ..+..|++||+.+++. +..+ ..+...+..|+++|+| .++++...++.
T Consensus 239 ~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~ 314 (329)
T 3fvz_A 239 FGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNT 314 (329)
T ss_dssp TTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCC
T ss_pred cCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCE
Confidence 556788999999 32 33333 2345899999988654 5555 3566789999999999 58889999999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|++|++..
T Consensus 315 I~~~~~~~ 322 (329)
T 3fvz_A 315 VWKFTLTE 322 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCc
Confidence 99999864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-11 Score=108.19 Aligned_cols=242 Identities=6% Similarity=-0.011 Sum_probs=162.2
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+...+..+++.+++ .+.++...++.|..|+...... ...+......+.++++.+++. ++++...++.|.+
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~--------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~ 124 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGIIK--------EYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGR 124 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEE--------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcEE--------EEeCCCcCCCceeeEECCCCC-EEEEecCCceEEE
Confidence 45779999999988 5666666688899998763110 111223455788999999887 7777777889999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~ 272 (406)
||. ++... . .........+..+++.+ ++.++++...++.|..||. +++.... .......+..+++++++.
T Consensus 125 ~d~-~g~~~----~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~- 195 (299)
T 2z2n_A 125 ITD-DGKIR----E-YELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA- 195 (299)
T ss_dssp ECT-TCCEE----E-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred ECC-CCCEE----E-ecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-
Confidence 998 43211 1 11122345688999998 5677777777789999998 5554322 223345688999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++...++.|.+||. +..........+...+.++++++++. +.++...++.|.+||... . ...
T Consensus 196 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~------------~~~ 259 (299)
T 2z2n_A 196 LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNN--I------------IEE 259 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTT--E------------EEE
T ss_pred EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCCC--c------------eEE
Confidence 6666666789999998 54421112333456799999999986 666666788999999832 1 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.....+...+.++++ +++. ++++.. .+.|..+++.++.
T Consensus 260 ~~~~~~~~~~~~i~~-~~g~-l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 260 YPIQIKSAEPHGICF-DGET-IWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EECSSSSCCEEEEEE-CSSC-EEEEET-TTEEEEEEEC---
T ss_pred EeCCCCCCccceEEe-cCCC-EEEEec-CCcEEEEEcCccc
Confidence 122334567899999 8887 566554 5677778877654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-13 Score=120.31 Aligned_cols=222 Identities=9% Similarity=0.129 Sum_probs=139.3
Q ss_pred CceeEEEEcCCCCcEEEEE--------eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 116 GEVNRARCMPQKPNLVGTK--------TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
..+...++ +|..++.+. ..++.|++|++.... ...+ ..+..++|+|+|+ .|+.++.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l----~~~~~~~~SpDg~-~la~~~~ 78 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------RRFI----ENATMPRISPDGK-KIAFMRA 78 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------EEEE----ESCEEEEECTTSS-EEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------eEEc----ccCCCeEECCCCC-EEEEEEe
Confidence 34566666 664433332 125679999988732 1223 4678899999998 7777664
Q ss_pred C---C--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec--------------------------
Q 015484 188 D---N--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-------------------------- 236 (406)
Q Consensus 188 d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------------------------- 236 (406)
+ + .|.+|++.+++.. . +..+.. +..++|+| +++.|+.++.
T Consensus 79 ~~~~~~~~l~~~~~~~g~~~------~-l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 79 NEEKKVSEIWVADLETLSSK------K-ILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEE------E-EEEESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------
T ss_pred ccCCCcceEEEEECCCCceE------E-EEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 3 3 3777787764321 1 122233 89999999 5565555543
Q ss_pred -CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCCcEEecCCCCCeEEE
Q 015484 237 -DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT-------TVALFDMRKMTVPLHILSSHTEEVFQV 308 (406)
Q Consensus 237 -dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~h~~~v~~i 308 (406)
...|.+||+.+++.+..+.. . .+..++|+|++ +++++..++ ...+|.+.+ .. ...+..+ ..+..+
T Consensus 150 ~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~ 222 (347)
T 2gop_A 150 EKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV 222 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE
T ss_pred ccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE
Confidence 25799999988876344544 3 78899999998 666665442 334444433 22 3444444 555554
Q ss_pred EEcCCCCCEEEEEeCC--------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee-EEeCCCCCcEEEEEe
Q 015484 309 EWDPNHETVLASSADD--------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD-FSWNKNDPWVISSVA 379 (406)
Q Consensus 309 ~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~s~~ 379 (406)
+|+|+. |+.++.+ ..|.+|| .. .......++...+.. +.|+ ++ ++++++
T Consensus 223 --spdg~~-l~~~~~~~~~~~~~~~~l~~~d-~~---------------~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~ 280 (347)
T 2gop_A 223 --DSDGER-ILLYGKPEKKYMSEHNKLYIYD-GK---------------EVMGILDEVDRGVGQAKIKD-GK--VYFTLF 280 (347)
T ss_dssp --EECSSC-EEEEECCSSSCCCSSCEEEEEC-SS---------------CEEESSTTCCSEEEEEEEET-TE--EEEEEE
T ss_pred --CCCCCE-EEEEEccccCCccccceEEEEC-CC---------------ceEeccccCCcccCCccEEc-Cc--EEEEEe
Confidence 999986 5444433 4677887 21 112222345566776 8999 76 788889
Q ss_pred CCCcEEEEeCCCc
Q 015484 380 DDNTVQVWQMTDS 392 (406)
Q Consensus 380 ~dg~i~iw~~~~~ 392 (406)
.++.++|| +.++
T Consensus 281 ~~~~~~l~-~~~g 292 (347)
T 2gop_A 281 EEGSVNLY-IWDG 292 (347)
T ss_dssp ETTEEEEE-EESS
T ss_pred cCCcEEEE-EcCC
Confidence 99999999 8744
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=121.74 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=130.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc---cCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQ---QDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
.++.+++++.. .++++|+.++ +.+|++....... .....+.... .+.. |+.++| ++. .|+++ .++.|++
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence 69999999988 5788888875 6779987643100 0112333333 3566 999999 676 88888 8899999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
||+.+.... .....+...+.++.+.+ ++ +++++.||.|.+||+..+.... +...|++++|+|+|
T Consensus 111 ~dv~sl~~~------~~~~~~~~~v~~i~~~~--p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--- 174 (388)
T 1xip_A 111 LDLEELSEF------RTVTSFEKPVFQLKNVN--NT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--- 174 (388)
T ss_dssp EESSSTTCE------EEEEECSSCEEEEEECS--SE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE---
T ss_pred EEchhhhcc------CccceeecceeeEEecC--CC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc---
Confidence 999876532 22345667788888775 23 7888999999999999776542 45689999999998
Q ss_pred EEEEeCCCcEEEEeCCCCCCC-cEEe------c---CCCCCeEEEEEcCCCCCEEEE
Q 015484 274 LATASSDTTVALFDMRKMTVP-LHIL------S---SHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~-~~~~------~---~h~~~v~~i~~~p~~~~~l~s 320 (406)
++.|..||.+++|+....... ...+ . +|...|.+|.|.+++. ++++
T Consensus 175 ~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~ 230 (388)
T 1xip_A 175 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV 230 (388)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence 577889999999988764421 2233 2 4778999999999886 4554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=117.03 Aligned_cols=244 Identities=10% Similarity=0.029 Sum_probs=160.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.....+.+.. + .++++...++.|.+||..+. +....+. .......+++++++. .+++...++.|.+||
T Consensus 44 ~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~--------~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 44 DVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTF--------KEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFIIN 111 (328)
T ss_dssp SCEEEEEEET-T-EEEEEEGGGTEEEEEETTTC--------CEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEEE
T ss_pred ccceEEEEEC-C-EEEEEEcCCCEEEEEECccc--------EEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEEE
Confidence 3456777743 3 56777777899999999873 2234443 345678999988774 555555889999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
+.+++....+.. ....+.......+++. ++.++++.. .++.|.++|+.+++.+..+.. ......+.++|+++ ++
T Consensus 112 ~~t~~~~~~i~~-g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~-l~ 186 (328)
T 3dsm_A 112 PKTYEITGYIEC-PDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNK-MW 186 (328)
T ss_dssp TTTTEEEEEEEC-TTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSE-EE
T ss_pred CCCCeEEEEEEc-CCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCC-EE
Confidence 987643221110 0000011145567773 566666654 488999999999887776653 33457889999998 66
Q ss_pred EEEeCC----------CcEEEEeCCCCCCCcEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 275 ATASSD----------TTVALFDMRKMTVPLHILSSH-TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 275 ~~~~~d----------g~i~vwd~~~~~~~~~~~~~h-~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+++..+ +.|.++|..+.+. ...+... ......++|+|+++. |..+.. .|.+||..+......
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~--- 259 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVR--- 259 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSS---
T ss_pred EEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeee---
Confidence 665544 7899999987553 3344322 246899999999875 555543 899999876321100
Q ss_pred ccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE----eCCCcEEEEeCCCc
Q 015484 344 AEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV----ADDNTVQVWQMTDS 392 (406)
Q Consensus 344 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~----~~dg~i~iw~~~~~ 392 (406)
.. ...+......++++|++..++++. ..++.|.+|++...
T Consensus 260 ------~~---~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 260 ------PF---LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp ------CS---BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred ------ee---ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence 00 011135688999999655577777 67899999999833
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-12 Score=109.84 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=152.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
.-.-+..|+|++..++++...++.|+.|+..... ...+ .....+.++++++++. ++++. ++.|.+||
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---------~~~~-~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d 79 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---------VQRV-TMDAPVSSVALRQSGG-YVATI--GTKFCALN 79 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEE-ECSSCEEEEEEBTTSS-EEEEE--TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---------EEEE-eCCCceEEEEECCCCC-EEEEE--CCeEEEEE
Confidence 3456789999776788888889999999988631 1122 2456789999999887 55554 56899999
Q ss_pred CCCccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecC---------CcEEEEECCCCcccccccccCCCeeEE
Q 015484 196 VSALAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDD---------CQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
..++.. ..+..... ....+++++++| +++++++.... ..-.+|.+........+.......+.+
T Consensus 80 ~~~g~~----~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi 154 (297)
T 3g4e_A 80 WKEQSA----VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGL 154 (297)
T ss_dssp TTTTEE----EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEE
T ss_pred CCCCcE----EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccce
Confidence 876532 11111111 124588999998 56666654321 223444443222222233334456889
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCC--CCCC----CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMR--KMTV----PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~----~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
+|+|+++.++++.+.++.|.+||+. ++.. .+..+..+...+..++++++|. +.++....+.|.+||..+
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---- 229 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---- 229 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT----
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC----
Confidence 9999998566677778899999974 3221 1122223345688999999995 677777788899999874
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeC-CCCCcEEEEEeCC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWN-KNDPWVISSVADD 381 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~l~s~~~d 381 (406)
.+++..+..+...+++++|. |+++.++++...+
T Consensus 230 ----------G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 230 ----------GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ----------CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred ----------ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 24455555566679999998 8887666666543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-12 Score=109.59 Aligned_cols=210 Identities=8% Similarity=0.003 Sum_probs=147.7
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
++|++++.++.|++||..+++ .+..+..+. ..+.+++++|+|+ +|++ .++.|..||. +++..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~--------~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~----- 68 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKE--------IVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGREL----- 68 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTE--------EEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEE-----
T ss_pred cEEEeeCCCCEEEEEECCCCe--------EEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEE-----
Confidence 589999999999999997743 255666655 4788999999987 7773 4678999998 55432
Q ss_pred eeeeecc-CccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCccccccc------ccCCCeeEEEecCCCCcEEEEEeC
Q 015484 208 MHVYEAH-ESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVK------AHEKEVNYLSFNPYNEWVLATASS 279 (406)
Q Consensus 208 ~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~l~~~~~ 279 (406)
..+..+ ...+.++.+.| +++++++.+. ++.|..+|. +++.+..+. .+......++..+++. ++++...
T Consensus 69 -W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~ 144 (276)
T 3no2_A 69 -WNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFA 144 (276)
T ss_dssp -EEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETT
T ss_pred -EEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecC
Confidence 233332 34688888998 6777777776 778888885 566655542 1222455667889998 8888889
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH- 358 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h- 358 (406)
++.|..||.. ++. +..+..+ ..+.++...+++. ++++++.++.|..+|..+. +.+..+..+
T Consensus 145 ~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG--------------~~~w~~~~~~ 206 (276)
T 3no2_A 145 TSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESN--------------RIVRRVNAND 206 (276)
T ss_dssp TTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTC--------------CEEEEEEGGG
T ss_pred CCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCC--------------cEEEEecCCC
Confidence 9999999987 554 5555543 4566778889886 6888888889999998762 233333211
Q ss_pred -----CCCeeeEEeCCCCCcEEEEE
Q 015484 359 -----KAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 359 -----~~~v~~~~~s~~~~~~l~s~ 378 (406)
...+..+...++|. ++++.
T Consensus 207 ~~~~~l~~~~~~~~~~~G~-i~v~~ 230 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGG-LYICN 230 (276)
T ss_dssp SBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred CCCccccccccceEcCCCC-EEEEe
Confidence 12367777888887 55554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-11 Score=113.10 Aligned_cols=247 Identities=8% Similarity=0.011 Sum_probs=159.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~i 193 (406)
.....|+|.|++ .++++...++.|++||...... ..+........ ++|++++. .|+++..++ .|.+
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~---------~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKV---------TTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEE---------EEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEE---------EEeeccCCCCc-eeEecCCC-cEEEEecCCCceEEE
Confidence 367899999988 5777777789999999986322 22222233334 99999988 888887766 7888
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc----ccccCCCe--eEEEe
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR----VKAHEKEV--NYLSF 266 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~i~~ 266 (406)
++......... +..... ....+.+++++|.++.+++ +..++.|+.||..++..... ..+....- ..++|
T Consensus 199 ~d~~~~~~~~~---~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 199 YMKASGWAPTR---IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEGGGTTCEEE---EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred EEcCCCceeEE---eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 88765432111 111112 3456788999985556555 66788999999987653221 11122222 38999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------------CCeEEEEEcCCCCCEEEEEe-CCCcEEEE
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------------EEVFQVEWDPNHETVLASSA-DDRRLMVW 330 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------------~~v~~i~~~p~~~~~l~s~~-~dg~i~iw 330 (406)
+|++..++++...++.|+.|+.... +..+.++. .....++++|++. ++++-. .+++|+.|
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKL 350 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEE
Confidence 9965547777777889999987642 33333322 3578999999997 777877 88999999
Q ss_pred eCCCCCcccccccc------cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 331 DLNRIGDEQLELDA------EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 331 d~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
++.... ....... .++.. ....-.....+++++++. ++++-..++.|+.+.+
T Consensus 351 ~~~~G~-v~~~~g~~~~~g~~~g~~-----~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGY-VSTVAGQVDVASQIDGTP-----LEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTE-EEEEEECTTCBSCCCBST-----TTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred ECCCCE-EEEEeCCCCCCCcCCCCh-----hceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence 975421 1000000 00000 000124588999999976 7888788888888765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-11 Score=116.27 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=159.3
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC--CccCCceee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS--ALAQDKVID 206 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~ 206 (406)
.++++...++.|.++|..+. +.+..+.. ...+..+.|+|+++ ++++++.|+.|.+||+. +.+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~----- 232 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT----- 232 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-----
T ss_pred eEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcE-----
Confidence 56777788999999999873 22444443 33567999999999 88889999999999995 4321
Q ss_pred eeeeeeccCccEEEEEee----CCCCCEEEEEecCCcEEEEECCCCccccccccc-----------CCCeeEEEecCCCC
Q 015484 207 AMHVYEAHESVVEDVSWH----LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH-----------EKEVNYLSFNPYNE 271 (406)
Q Consensus 207 ~~~~~~~~~~~i~~i~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~ 271 (406)
+..+.. ......++|+ |++..++++...++.+.++|..+.+.+..+... ...+..+..++++.
T Consensus 233 -v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 233 -VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp -EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred -eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 223332 3346789999 554455555567799999999998887665321 22577888898887
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
.+++....+|.|.++|....................+.|+|+++++++++..++.|.++|+.+. ++
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~--------------kl 376 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG--------------KL 376 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT--------------EE
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC--------------cE
Confidence 6677777789999999986542221122234567789999999987777778899999999862 22
Q ss_pred EEEec-----CCCCCeeeEE-eCCCCCcEEEEEe-CCCcEEEEeCCCc
Q 015484 352 LFSHG-----GHKAKISDFS-WNKNDPWVISSVA-DDNTVQVWQMTDS 392 (406)
Q Consensus 352 ~~~~~-----~h~~~v~~~~-~s~~~~~~l~s~~-~dg~i~iw~~~~~ 392 (406)
+.... .|.+ ..+. ++|++..+++++. .++.|.+++..++
T Consensus 377 ~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 377 VAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp EEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred EEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 22221 1322 1222 5787543566653 4689999998873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=128.84 Aligned_cols=204 Identities=12% Similarity=0.054 Sum_probs=133.5
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
|...+.+++|||+|+ +|+.++.++ .|++||+.+++... .... ...+..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~-----~~~~--~~~~~~~~wsp-Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELP-----DVLE--RVKFSCMAWTH-DGKGMFYNAYPQQ 193 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEE-----EEEE--EECSCCEEECT-TSSEEEEEECCCC
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCc-----cccc--CcccceEEEEe-CCCEEEEEEECCc
Confidence 444688999999999 777655433 89999998864321 0111 12366799999 5666666666655
Q ss_pred ----------------EEEEECCCCccc--ccc--cccCCCeeEEEecCCCCcEEEEEeC-----CCcEEEEeCCC----
Q 015484 240 ----------------LMIWDLRTNQTQ--QRV--KAHEKEVNYLSFNPYNEWVLATASS-----DTTVALFDMRK---- 290 (406)
Q Consensus 240 ----------------i~i~d~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~~l~~~~~-----dg~i~vwd~~~---- 290 (406)
|++|++.++... ..+ ..+...+..+.|+|+|+ +|+.++. +..|++||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccc
Confidence 999999887632 111 22345578999999999 5555443 56899999976
Q ss_pred --CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC--Cee
Q 015484 291 --MTVPLHILSSHTEEVFQVEWDPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA--KIS 363 (406)
Q Consensus 291 --~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~ 363 (406)
+......+..+...+.. .|+|+++.+++.+..+ +.|.+||+...... ....+..|.. .+.
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KWKVLVPEHEKDVLE 339 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cceeccCCCCCCeEE
Confidence 43235666666666655 4888988655555443 36999998763210 0111222322 578
Q ss_pred eEEeCCCCCcEEEEEeCCCc--EEEEeCCCc
Q 015484 364 DFSWNKNDPWVISSVADDNT--VQVWQMTDS 392 (406)
Q Consensus 364 ~~~~s~~~~~~l~s~~~dg~--i~iw~~~~~ 392 (406)
+++|++++. ++++...|+. |.+|++.++
T Consensus 340 ~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 340 WVACVRSNF-LVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEEEETTTE-EEEEEEETTEEEEEEEETTTC
T ss_pred EEEEEcCCE-EEEEEEECCEEEEEEEECCCC
Confidence 899997665 7888888885 556676444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=109.23 Aligned_cols=208 Identities=12% Similarity=0.067 Sum_probs=145.7
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+..+.....+++|+|+++.+++++..++.|..|+...+ . ..+..+...+.+++++| +++++++...++
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-------~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~ 90 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-------SPEMHPSHHQNGHCLNK-QGHLIACSHGLR 90 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-------EEEESSCSSEEEEEECT-TCCEEEEETTTT
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-------EEEECCCCCcceeeECC-CCcEEEEecCCC
Confidence 45555666778899999988757888888999999998764 1 23334567789999998 677887777778
Q ss_pred cEEEEECCCCcccccccc----cCCCeeEEEecCCCCcEEEE----Ee-------------CCCcEEEEeCCCCCCCcEE
Q 015484 239 QLMIWDLRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLAT----AS-------------SDTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~ 297 (406)
.|.+||..+++....... ....++.++++|+|. ++++ |+ ..+.|..++.. .. +..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~ 166 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSA 166 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEE
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CC-EEE
Confidence 999999987765332211 123567899999998 7776 32 12456666654 22 455
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
+..+......++|+|+++. +++.+.++.|.+|++...+.... ...++ ..+...+..++++++|. ++++
T Consensus 167 ~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~--------~~~~~--~~~~~~p~~i~~d~~G~-l~v~ 234 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEY--------QGVHF--TVEPGKTDGLRVDAGGL-IWAS 234 (296)
T ss_dssp EECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEE--------EEEEE--CCSSSCCCSEEEBTTSC-EEEE
T ss_pred eecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcC--------CCeEe--eCCCCCCCeEEECCCCC-EEEE
Confidence 5566677899999999985 57888889999999863111100 01111 33455678999999998 5665
Q ss_pred EeCCCcEEEEeCCCcc
Q 015484 378 VADDNTVQVWQMTDSI 393 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~~ 393 (406)
. ++.|.+|+.....
T Consensus 235 ~--~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 235 A--GDGVHVLTPDGDE 248 (296)
T ss_dssp E--TTEEEEECTTSCE
T ss_pred c--CCeEEEECCCCCE
Confidence 5 7889999987543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-10 Score=102.33 Aligned_cols=241 Identities=8% Similarity=-0.006 Sum_probs=164.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
....+.++.+.+++ .+.++...++.|.+|+.. .... ...+..+...+.++++.+++. ++++...++.|..
T Consensus 18 ~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 18 PDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK-------EFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGK 87 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE-------EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred CCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE-------EEECCCCCCcceeEEECCCCC-EEEEecCCCeEEE
Confidence 34678999999998 566666678899999977 2211 111223346788999998887 7777766889999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~ 272 (406)
||.. +.. .. .........+.++++.+ ++.++++...++.|..+|.. ++... .+......+..+++++++.
T Consensus 88 ~d~~-g~~-~~----~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~- 158 (300)
T 2qc5_A 88 LSKK-GGF-TE----YPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA- 158 (300)
T ss_dssp ECTT-SCE-EE----EECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred ECCC-CCe-EE----ecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-
Confidence 9977 322 11 11122335688999997 67788777778899999987 54432 1222345788999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++...++.|..+|. ...........+...+..+++++++. +.++....+.|.+||... . ...
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g-~-------------~~~ 222 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG-E-------------ISE 222 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC-C-------------EEE
T ss_pred EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC-c-------------EEE
Confidence 6666666788999998 33321112223445789999999885 666666677899999732 1 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.....+...+.+++++++|. ++++...++.|..|+..
T Consensus 223 ~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 223 YDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND 259 (300)
T ss_dssp EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred EECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC
Confidence 12223455688999999998 67776667889999984
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-12 Score=125.16 Aligned_cols=247 Identities=11% Similarity=-0.004 Sum_probs=152.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC-C----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSS-C----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN 189 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~d-g----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 189 (406)
...+..++|+|+|. .||.+..+ | +|++||+.++.. . ....+...+..++|+|+ + .|+.++.++
T Consensus 162 ~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~--------~-~~~~~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 162 ATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKP--------L-ADELKWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp -EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCE--------E-EEEEEEEESCCCEESTT-S-EEEEEECCC
T ss_pred CEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCC--------C-CccCCCceeccEEEECC-C-EEEEEEecC
Confidence 34688999999995 55555433 3 599999988432 1 11111222357899999 7 777766655
Q ss_pred e--------------EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCC--
Q 015484 190 K--------------ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTN-- 248 (406)
Q Consensus 190 ~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~-- 248 (406)
. |.+|++.++.....+ +.....+...+..+.|+| +++.++..+.+ ..|++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l--v~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQP--VFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEE--EeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 4 889998765432111 111122333588999999 56666555543 38999999876
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeC----CCcEEEEeCCCCC-CCcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASS----DTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+....+..+...+.... +|+++ .|+..+. ++.|.+||+.+.. .....+..+...+..+.|+ +..++++...
T Consensus 307 ~~~~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~ 382 (741)
T 1yr2_A 307 GPVTALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIH 382 (741)
T ss_dssp CCCEEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEE
T ss_pred cccEEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEE
Confidence 31344444444444443 47888 5555554 3459999987642 2223334444556678887 3458889999
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCcc
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSI 393 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~ 393 (406)
|+..+||.+...+ .....+.. +...|..+.++|+++.++++.+. .+.|++||+.++.
T Consensus 383 dg~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 383 DAKSQVLAFDLDG-------------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TTEEEEEEEETTS-------------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEeCCC-------------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9988888664211 12222222 35568889999998865555443 4789999998764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-11 Score=112.96 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=172.0
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec----CCCCCeE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS----PFKEGYL 182 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l 182 (406)
++...+.....+..+.|+|+++ ++.+++.++.|.+||+... ..+....+... .....++|+ |+|+ ++
T Consensus 188 ~v~~~i~~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~------t~~~v~~i~~G-~~P~~ia~s~~~~pDGk-~l 258 (567)
T 1qks_A 188 EIKTVLDTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMK------EPTTVAEIKIG-SEARSIETSKMEGWEDK-YA 258 (567)
T ss_dssp CEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSS------SCCEEEEEECC-SEEEEEEECCSTTCTTT-EE
T ss_pred eEEEEEeCCCCccceEECCCCC-EEEEEcCCCeEEEEECCCC------CCcEeEEEecC-CCCceeEEccccCCCCC-EE
Confidence 3455566666788999999994 6777788999999999511 12334455443 345789999 6898 55
Q ss_pred EEe-cCCCeEEEEeCCCccCCceeeeeee-ee---ccCc-cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc--ccc
Q 015484 183 VSG-SHDNKICLWDVSALAQDKVIDAMHV-YE---AHES-VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--QRV 254 (406)
Q Consensus 183 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~ 254 (406)
+++ ..+++|.++|..+.+....+..... .. .|.. .+..+..++.+..+++....+|.|.++|....+.+ ..+
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 555 4569999999877543332221100 00 1222 57788888866777777788899999998765432 222
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----CCCCCeEEEEEcCCCCCEEEEEe-CCCcEE
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----SHTEEVFQVEWDPNHETVLASSA-DDRRLM 328 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~i~~~p~~~~~l~s~~-~dg~i~ 328 (406)
........+.|+|++++++++...++.|.++|+.+.+. +..+. .|.+.-..+ ++|++..+.+++. .++.|.
T Consensus 339 -~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 339 -SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA 415 (567)
T ss_dssp -ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred -eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence 23345678899999996666666778999999998653 33332 243322222 6887555666664 468999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC------CCcEEEEeCCCc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD------DNTVQVWQMTDS 392 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~------dg~i~iw~~~~~ 392 (406)
++|........ ...+.+..+......-..+..+|+++++.++... .+.|.++|+.+.
T Consensus 416 vid~~~~~~~~-------~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 416 LIGTDPEGHPD-------NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECCTTTCTT-------TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCCcc-------ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 99987622110 1134455555443334557899999975554421 358999999875
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=117.57 Aligned_cols=186 Identities=17% Similarity=0.108 Sum_probs=128.9
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccC-----CceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQ-----DKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
.++.+++++..+ ++++|+.++ +.+|++..... ...+.+... ..+.. |+.++| ++..|+++ .++.|++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 688999999887 999998875 55698765431 001222122 23556 999999 46777777 8899999
Q ss_pred EECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 015484 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 243 ~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
||+++.........+...+.++.+.+. -+++++.||.|.+||+..... .. +...|++++|+|+| ++.|.
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE---EEEEE
T ss_pred EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc---eEEEE
Confidence 999987765566667778888877654 288889999999999986553 22 44689999999999 56788
Q ss_pred CCCcEEEEeCCCCCcc-cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 323 DDRRLMVWDLNRIGDE-QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
.||.+++|+....... .... ..|+.+ ....+|...|.++.|.+++.+ +++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I---~~Pp~~-~~~~~~~~~V~sI~wl~~~~f-lv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEF---SLPSEL-EELPVEEYSPLSVTILSPQDF-LAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEE---CCCHHH-HTSCTTTSEEEEEEESSSSEE-EEE
T ss_pred cCCcEEEEcCCCcccccccee---cCCccc-ccccCCCeeEEEEEEecCCeE-EEE
Confidence 9999999987652210 0000 000000 000146788999999999884 444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-11 Score=105.37 Aligned_cols=229 Identities=9% Similarity=-0.026 Sum_probs=147.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
-.....|+|++..++++...++.|.+|+...... ..+. ....+.+++|++++. ++++. .+ .|.+||.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---------~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---------TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDT 116 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---------EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---------EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEEC
Confidence 3467899998767888888889999999876321 1222 345789999999887 65554 44 4999998
Q ss_pred CCccCCceeeeeeeee--ccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 197 SALAQDKVIDAMHVYE--AHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.++... .+.... .....+++++++| +++++++... .+.|..++ +++. ..+.......+.++|+|
T Consensus 117 ~~g~~~----~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 117 ATGVLT----LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSP 188 (326)
T ss_dssp TTCCEE----EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECT
T ss_pred CCCcEE----EEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcC
Confidence 765421 111111 1124688999999 5566655432 24566666 3432 22222334567899999
Q ss_pred CCCcEEEEEeCCCcEEEEeCC--CC-CC----CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 269 YNEWVLATASSDTTVALFDMR--KM-TV----PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~--~~-~~----~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
+++.++++.+.++.|.+||+. ++ .. .+..+......+..+++.+++. +.++...++.|.+||...
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g------- 260 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG------- 260 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-------
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC-------
Confidence 998455555667899999986 43 21 1122223345678899999996 566666678899998742
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeC-CCCCcEEEEEeCCC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWN-KNDPWVISSVADDN 382 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~~l~s~~~dg 382 (406)
..+..+..+...+++++|+ +++..++++...++
T Consensus 261 --------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 261 --------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp --------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred --------CEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 3333344455579999998 88875666655543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-12 Score=123.78 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=131.8
Q ss_pred CCCCCeeEEEecCCCCCeEE-----EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 164 GHDKEGYGLSWSPFKEGYLV-----SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 164 ~h~~~v~~l~~~~~~~~~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
+|...+.+++|||+|+ +|+ .|+.+..|++||+.+++.... ..+. ......++|+| +++.|+.++.|.
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~--~~~~~~~~wsp-Dg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV----DVIE--GGKYATPKWTP-DSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS----CCBS--CCTTCCCEECT-TSSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC----cccC--cccccceEEec-CCCEEEEEEecC
Confidence 4555788999999999 777 455567899999998753200 0111 11126789999 567777777766
Q ss_pred c-------------EEEEECCCCccc----ccccccCCCeeEEEecCCCCcEEEEEeCCC----cEEEEeCCCCCCCcEE
Q 015484 239 Q-------------LMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYNEWVLATASSDT----TVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~-------------i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~ 297 (406)
. |++|++.++... .....+...+.++.|+|+|+ +|+.++.++ .|.++|.... ....
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~--~~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEK--DFRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCS--SCEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCC--ceEE
Confidence 5 999999887632 22233446788999999999 455444444 6677765443 2555
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEe---CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCc
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSA---DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPW 373 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~ 373 (406)
+..+...+....| +++. +++.+. .++.|.+||+...... ........+ ...+.+++|+ ++.
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~-~~~- 331 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVPEDSSASLLSVSIV-GGH- 331 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEECCCSSCEEEEEEEE-TTE-
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEecCCCCCeEEEEEEE-CCE-
Confidence 6666666777777 6676 666665 3588999998763210 011112222 4457888888 444
Q ss_pred EEEEEeCCCcEEEEeCC
Q 015484 374 VISSVADDNTVQVWQMT 390 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~ 390 (406)
++++...|+..+||.+.
T Consensus 332 lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEe
Confidence 88999999998888654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-10 Score=98.31 Aligned_cols=238 Identities=7% Similarity=-0.007 Sum_probs=157.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..+++.+++ .+.++...++.|..|+... ... ...+......+.++++.+++. ++++...++.|..+
T Consensus 61 ~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g-~~~-------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~ 130 (300)
T 2qc5_A 61 DAKVMCLIVSSLG-DIWFTENGANKIGKLSKKG-GFT-------EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKL 130 (300)
T ss_dssp TCCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEE-------EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEE
T ss_pred CCcceeEEECCCC-CEEEEecCCCeEEEECCCC-CeE-------EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEE
Confidence 4678999999988 5666666678899998773 110 112222346788999998887 77777668899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~ 273 (406)
+.. +... . .........+..+++.+ +++++++...++.|..+|. +++.... .......+..+++++++. +
T Consensus 131 ~~~-g~~~-~----~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l 201 (300)
T 2qc5_A 131 TAD-GTIY-E----YDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-L 201 (300)
T ss_dssp CTT-SCEE-E----EECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred CCC-CCEE-E----ccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-E
Confidence 876 3211 1 11222345688999998 5667777666788999998 4443321 122345688999999887 6
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+++....+.|.+||. .+.........+...+.++++++++. +.++...++.|..||... . ...+
T Consensus 202 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g--~------------~~~~ 265 (300)
T 2qc5_A 202 WFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDN--T------------IQEY 265 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS--C------------EEEE
T ss_pred EEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCC--c------------EEEE
Confidence 666666678999998 33321122333456789999999986 666666678999999732 1 1112
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
........+.+++++++|. ++++.. . .|..+++.
T Consensus 266 ~~~~~~~~~~~i~~~~~g~-l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGS-VWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECCSTTCCCCCEEECTTSC-EEEECS-S-EEEEEEEC
T ss_pred ECCccCCccceeEeCCCCC-EEEEcc-C-ceEEeCCC
Confidence 2222345688999999998 565544 4 66666653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-11 Score=102.97 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=140.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+...+.++++.+++ .++++.. ++.|.+|+..... ...+. .....+.++++++++. ++++...++.|.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~---------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~ 132 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN---------QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVV 132 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC---------CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEE
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce---------EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEE
Confidence 33568899999988 4565555 8899999987632 11122 2235688999999887 777777788999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+|+..+... . .........+.++++++ +++++++...++.|.+||................+..++++++|.
T Consensus 133 ~~~~~~~~~--~----~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~- 204 (270)
T 1rwi_B 133 KLAAGSKTQ--T----VLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT- 204 (270)
T ss_dssp EECTTCCSC--E----ECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-
T ss_pred EEECCCcee--E----eeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-
Confidence 997544321 1 11112234578899998 567887777788999999887654333223336688999999986
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++++...++.|.+||...... ......+...+.+++++|++. ++++...++.|+++++..
T Consensus 205 l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred EEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence 777777788999999875432 222223335789999999996 788888999999999875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-11 Score=118.29 Aligned_cols=249 Identities=13% Similarity=0.100 Sum_probs=154.3
Q ss_pred cCCceeEEEEcCCCCcEEE-EEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 114 VDGEVNRARCMPQKPNLVG-TKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~-~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
|...+..++|+|++. +|| +.+. ..+|++||+.++... ...+.. .....++|+ +++ .|+.++.+
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~-------~~~~~~--~k~~~~~Ws-Dg~-~l~y~~~~ 194 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPL-------ETPLKD--VKFSGISWL-GNE-GFFYSSYD 194 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEE-------EEEEEE--EESCCCEEE-TTT-EEEEEESS
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCC-------ccccCC--ceeccEEEe-CCC-EEEEEEec
Confidence 445688889999995 455 3322 247999999884321 011111 113578899 888 67777666
Q ss_pred C-------------eEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec---CCcEEEEECCCCc-c
Q 015484 189 N-------------KICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD---DCQLMIWDLRTNQ-T 250 (406)
Q Consensus 189 g-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~---dg~i~i~d~~~~~-~ 250 (406)
. .|.+|++.+...... .+..... +......+.|+|++..++++... ...|+++|+.++. .
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~ 272 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP 272 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc
Confidence 3 399999887543211 1222222 34457789999955444454442 3589999998764 3
Q ss_pred cccccccCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-
Q 015484 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR- 325 (406)
Q Consensus 251 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg- 325 (406)
...+..+....... |++++..+++....+ +.|..+|+.+... ....+..|...+. .|+++++.++++...++
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 44554455555554 666677566665554 5799999987542 1355666776665 88999987666666666
Q ss_pred -cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC---CcEEEEeCCCcc
Q 015484 326 -RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD---NTVQVWQMTDSI 393 (406)
Q Consensus 326 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d---g~i~iw~~~~~~ 393 (406)
.|++|++... ............+..+.+++++..++++.+.. +.|..||+.++.
T Consensus 350 ~~l~~~d~~g~--------------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 350 ARVEQFDYEGK--------------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEECTTSC--------------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eEEEEEECCCC--------------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 5788887641 11111112344577788888888655555432 789999987764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-10 Score=99.96 Aligned_cols=250 Identities=7% Similarity=-0.064 Sum_probs=153.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCeeEE
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGYGL 172 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l 172 (406)
...+.-...- .++++|+++.+.++.. .++.|.+||..+... ...+.-. ...-..+
T Consensus 60 ~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--------~~~i~~~~~~~~~~g~~p~~~ 130 (373)
T 2mad_H 60 LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--------IADIELPDAPRFDVGPYSWMN 130 (373)
T ss_pred EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--------EEEEECCCccccccCCCccce
Confidence 3444433333 9999999965444432 367899999976322 2222111 1234589
Q ss_pred EecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 173 SWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 173 ~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
+|+|+|+ +|+.+.. ++.|.++| .+++.... .+.. .. ++.+.|.+...+++.+.||.+.++|. +++.
T Consensus 131 ~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~-----~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 131 ANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQ-----LLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred EECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeE-----EcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 9999999 7777653 57899999 77643211 0111 11 24455666778888889999999999 7765
Q ss_pred ccccc-----ccCCCe-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecC----------CCCCeEEEEEcCC
Q 015484 251 QQRVK-----AHEKEV-NYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSS----------HTEEVFQVEWDPN 313 (406)
Q Consensus 251 ~~~~~-----~~~~~v-~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~----------h~~~v~~i~~~p~ 313 (406)
..... ....++ ....+.+++..++++ +..+.+.+.|+...... +..+.. .......+.++|+
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d 277 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS 277 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC
Confidence 52221 111221 234556666534444 46789999999754321 111111 1123445788999
Q ss_pred CCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCc
Q 015484 314 HETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DDNT 383 (406)
Q Consensus 314 ~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~ 383 (406)
++.++++.. ..+.|.++|+.+ .+.+..+.. ......++|+|+|+++++++. .++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--------------~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~ 342 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------------GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCC--------------CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCe
Confidence 886555443 135799999876 244444432 235889999999995566665 5899
Q ss_pred EEEEeCCCcccC
Q 015484 384 VQVWQMTDSIYR 395 (406)
Q Consensus 384 i~iw~~~~~~~~ 395 (406)
|.++|+.++...
T Consensus 343 V~ViD~~t~~vv 354 (373)
T 2mad_H 343 LHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCCEE
Confidence 999999987653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-11 Score=105.58 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=145.2
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-----CCeeEEEecCCCCCeE
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-----KEGYGLSWSPFKEGYL 182 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l 182 (406)
....+........++++|++ .++++...++.|.+||..+... ...+.... .....+++ ++..++
T Consensus 76 ~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~--------~~~i~~g~~~~~~~~p~~i~~--~~~~ly 144 (328)
T 3dsm_A 76 EVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEI--------TGYIECPDMDMESGSTEQMVQ--YGKYVY 144 (328)
T ss_dssp EEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEE--------EEEEECTTCCTTTCBCCCEEE--ETTEEE
T ss_pred EEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeE--------EEEEEcCCccccCCCcceEEE--ECCEEE
Confidence 34455666789999999988 6666655789999999987432 22232211 14556777 344244
Q ss_pred EEec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC----------CcEEEEECCCCccc
Q 015484 183 VSGS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD----------CQLMIWDLRTNQTQ 251 (406)
Q Consensus 183 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~ 251 (406)
++.. .++.|.++|+.+++... .+.. ......++++| ++++++++..+ +.|.++|..+++..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~------~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVD------ELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEE------EEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEcCCCCCEEEEEECCCCeEEE------EEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 4443 48999999998864322 2221 23456788998 56666665544 78999999988876
Q ss_pred cccccc-CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecCCCCCeEEEEEcCCCCCEEEEE----eCCC
Q 015484 252 QRVKAH-EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSSHTEEVFQVEWDPNHETVLASS----ADDR 325 (406)
Q Consensus 252 ~~~~~~-~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~i~~~p~~~~~l~s~----~~dg 325 (406)
..+... ......++++|+++ .|.++.. .|.+||..+.+..... +..+......++++|++..++++. ..++
T Consensus 217 ~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp EEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred EEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 665422 24678999999988 5555543 8999999876542111 222246789999999666677777 6789
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
.|.+||.. ++..........|..+.+.+
T Consensus 294 ~V~v~d~~--g~~~~~i~~G~~P~~~~~~~ 321 (328)
T 3dsm_A 294 IVYRYSPQ--GKLIDEFYVGIIPGAFCWKL 321 (328)
T ss_dssp EEEEECTT--CCEEEEEEEEESEEEEEEEC
T ss_pred EEEEECCC--CCEEEEEEeccCcceEEEec
Confidence 99999987 33333333333444444433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-10 Score=101.86 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=149.1
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
............|+|++..+++++..++.|..|+.... ...+..+...+.+++++++|. ++++...++.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----------~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~ 108 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----------VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA 108 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----------EEEEEESCSCEEEEEECTTSC-EEEEETTTTE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----------EEEEeCCCCccceeeECCCCC-EEEEECCCCE
Confidence 33455667889999999668888888999999987431 234445567789999999887 6666666688
Q ss_pred EEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEE----Eec-------------CCcEEEEECCCCcccc
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGS----AGD-------------DCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~ 252 (406)
|.+|+.. +.. ..+ ...... ....+++++++| +++++++ |.. .+.|..+|..+++...
T Consensus 109 v~~~~~~-g~~-~~~--~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 109 ITRSDAD-GQA-HLL--VGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEEECTT-SCE-EEE--ECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEEECCC-CCE-EEE--EeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 9999975 321 111 011111 123467899998 6677765 321 2568888877666433
Q ss_pred cccccCCCeeEEEecCCCCcEEEEEeCC------CcEEEEeCCCCCCC-cEE-ecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 253 RVKAHEKEVNYLSFNPYNEWVLATASSD------TTVALFDMRKMTVP-LHI-LSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 253 ~~~~~~~~v~~i~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~-~~~-~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.. .....+.++|+|++. .|+.+... +.|.+||+...... ... ..........++++++|. +. +++.+
T Consensus 184 ~~--~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lw-v~~~~ 258 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LW-SSSGT 258 (305)
T ss_dssp EE--EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EE-ECCSS
T ss_pred Ee--cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EE-EecCC
Confidence 22 344568899999998 55555544 68999998753200 011 111234456789999996 34 44444
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNT 383 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~ 383 (406)
.|.+|+... ..+..+..+. .+.+++|+++++.++ .++.++.
T Consensus 259 -gv~~~~~~g---------------~~~~~~~~~~-~~~~~~f~~d~~~L~-it~~~~l 299 (305)
T 3dr2_A 259 -GVCVFDSDG---------------QLLGHIPTPG-TASNCTFDQAQQRLF-ITGGPCL 299 (305)
T ss_dssp -EEEEECTTS---------------CEEEEEECSS-CCCEEEECTTSCEEE-EEETTEE
T ss_pred -cEEEECCCC---------------CEEEEEECCC-ceeEEEEeCCCCEEE-EEcCCeE
Confidence 499998753 3333333333 588999999888544 4444543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-10 Score=101.28 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=134.2
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA 256 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 256 (406)
++ +|++++.++.|.+||..+++.. ..+..+. ..+.++.+.| ++++++ +.++.|..||. +++.+..+..
T Consensus 5 ~~-~lv~~~~~~~v~~~d~~tG~~~------w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 5 QH-LLVGGSGWNKIAIINKDTKEIV------WEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CE-EEEECTTCSEEEEEETTTTEEE------EEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC
T ss_pred Cc-EEEeeCCCCEEEEEECCCCeEE------EEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC
Confidence 44 8999999999999999887543 3333343 4688899998 677877 45778999998 7888877765
Q ss_pred c-CCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEec------CCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 257 H-EKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILS------SHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 257 ~-~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. ...+.++.+.|+|. ++++.+. ++.|..+|. .++. +..+. .+......++..+++. ++++...++.|.
T Consensus 74 ~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~ 149 (276)
T 3no2_A 74 PAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVR 149 (276)
T ss_dssp CTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEE
T ss_pred CCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEE
Confidence 4 35788999999999 7777766 677777775 3332 33332 1112345567889997 688899999999
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.||... +.+..+..+ ..+.++...+++. ++++++.++.|..+|..++..
T Consensus 150 ~~d~~G---------------~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 150 EIAPNG---------------QLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EECTTS---------------CEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCE
T ss_pred EECCCC---------------CEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE
Confidence 999862 344444433 3466788889998 677777788899999996644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=104.03 Aligned_cols=260 Identities=13% Similarity=0.073 Sum_probs=154.7
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEe--CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKT--SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 182 (406)
.++.+..+. ..+..++++|++ .++++.. .++.++||.+.+....+..... .....|-..+.++++++++. ++
T Consensus 8 ~~~~v~~~~--~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~--~~~~~~~~~p~gv~~d~~g~-L~ 81 (343)
T 2qe8_A 8 RLEVVAELS--LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIPFPPQS--GNAIITFDTVLGIKSDGNGI-VW 81 (343)
T ss_dssp CCEEEEEES--SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEESCCCC--SSCCCCCSCEEEEEECSSSE-EE
T ss_pred eeEEEEEcC--CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeecCCCcc--cCcccceeEeeEEEEcCCCc-EE
Confidence 456565554 789999999998 5676653 2343555555432211100000 11224557899999999876 55
Q ss_pred EEecC-----CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCcccccc
Q 015484 183 VSGSH-----DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 183 ~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~ 254 (406)
++-.. ++.|.+||+.+++....+..-.....+...++.++++|.++.++++.. .++.|.+||+.+++....+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 54332 578999999876432221100000112345689999985566666665 6789999999877654333
Q ss_pred ccc-----------------------------CCCeeEEEecCCCCcEEEEEeCCC-cEEEEeCC---CCCC-------C
Q 015484 255 KAH-----------------------------EKEVNYLSFNPYNEWVLATASSDT-TVALFDMR---KMTV-------P 294 (406)
Q Consensus 255 ~~~-----------------------------~~~v~~i~~~~~~~~~l~~~~~dg-~i~vwd~~---~~~~-------~ 294 (406)
..| ...++.|+|+|+++ .|+.+..++ .+..++.. .... .
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 211 12368899999998 666665555 55555532 1110 0
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
+ ...++......+++++++. ++++...++.|.+||.... . ...+.. ..+...+.+++|.+++. +
T Consensus 241 ~-~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~-----------~~~~~~-~~~~~~p~~va~~~~g~-l 304 (343)
T 2qe8_A 241 I-ERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-A-----------YKLLVT-DEKLSWTDSFNFGSDGY-L 304 (343)
T ss_dssp C-EEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-E-----------EEEEEE-CGGGSCEEEEEECTTSC-E
T ss_pred e-EecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-C-----------EEEEEE-CCceecCCeeEECCCCc-E
Confidence 1 1113344567799999985 7888888999999998321 0 111211 12345689999999987 6
Q ss_pred EEEEeCCCcEEEE
Q 015484 375 ISSVADDNTVQVW 387 (406)
Q Consensus 375 l~s~~~dg~i~iw 387 (406)
+++.+..+.+.+|
T Consensus 305 ~v~~~~~~~~~~f 317 (343)
T 2qe8_A 305 YFDCNQLHHSAPL 317 (343)
T ss_dssp EEEECCGGGSGGG
T ss_pred EEEeCcccccccc
Confidence 7776644444333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=95.33 Aligned_cols=208 Identities=9% Similarity=0.126 Sum_probs=135.5
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEE
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d 244 (406)
+..-.-+..|++++..++++...++.|..||..++.. ..+ .....+.+++++| +++++++ . ++.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~-~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------QRV-TMDAPVSSVALRQ-SGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------EEE-ECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------EEE-eCCCceEEEEECC-CCCEEEE-E-CCeEEEEE
Confidence 3344568999997664777777889999999887532 111 2346789999998 5565544 3 56799999
Q ss_pred CCCCcccccccc----cCCCeeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEc
Q 015484 245 LRTNQTQQRVKA----HEKEVNYLSFNPYNEWVLATASS---------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWD 311 (406)
Q Consensus 245 ~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~ 311 (406)
..+++....... ....++.++++|+|. ++++... ...-.+|.+..... +..+..+....+.++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWS 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEEC
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEc
Confidence 987764322211 124578899999998 5554322 12334554443222 33333334557899999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCC-CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 312 PNHETVLASSADDRRLMVWDLNR-IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 312 p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
|+++.++++.+.++.|.+|++.. .+... ..+....+..+...+..++++++|. +.++....+.|..|++.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~--------~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQIS--------NRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPV 228 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEE--------EEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTT
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCccc--------CcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCC
Confidence 99987667777789999999742 11110 0122333333445678899999997 77777778889999998
Q ss_pred Cccc
Q 015484 391 DSIY 394 (406)
Q Consensus 391 ~~~~ 394 (406)
++.+
T Consensus 229 tG~~ 232 (297)
T 3g4e_A 229 TGKR 232 (297)
T ss_dssp TCCE
T ss_pred CceE
Confidence 6654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-10 Score=114.70 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=124.0
Q ss_pred CCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
|...+.+++|||+|+ +|+.++.+ ..|++||+.+++... . ..+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~------~-~~~~~~~~~~~wspD--~~l~~~~~~~~ 230 (741)
T 1yr2_A 161 GATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLA------D-ELKWVKFSGLAWLGN--DALLYSRFAEP 230 (741)
T ss_dssp --EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCEEE------E-EEEEEESCCCEESTT--SEEEEEECCCC
T ss_pred CCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCC------c-cCCCceeccEEEECC--CEEEEEEecCc
Confidence 334678999999998 77766543 369999998875311 1 111122357899994 55555555443
Q ss_pred --------------EEEEECCCCccc--ccc--cccCCCeeEEEecCCCCcEEEEEeCC-----CcEEEEeCCCCCCC-c
Q 015484 240 --------------LMIWDLRTNQTQ--QRV--KAHEKEVNYLSFNPYNEWVLATASSD-----TTVALFDMRKMTVP-L 295 (406)
Q Consensus 240 --------------i~i~d~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~-~ 295 (406)
|++|++.++... ..+ ..+...+..+.|+|+|+ +|+..+.+ ..|++||+.++... .
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 899999876532 122 22233588999999999 55555433 38999999875222 4
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
..+..+...+.... +|+++.+++.+.. ++.|.+||+.... .........+...+.+++|+ .+
T Consensus 310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------~~~~~l~~~~~~~l~~~~~~-~~- 374 (741)
T 1yr2_A 310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST------------PRFDTVVPESKDNLESVGIA-GN- 374 (741)
T ss_dssp EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS------------CEEEEEECCCSSEEEEEEEE-BT-
T ss_pred EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc------------cccEEEecCCCCeEEEEEEE-CC-
Confidence 45555555555553 4888764444332 3459999987521 01122223344456678887 34
Q ss_pred cEEEEEeCCCcEEEEeCC
Q 015484 373 WVISSVADDNTVQVWQMT 390 (406)
Q Consensus 373 ~~l~s~~~dg~i~iw~~~ 390 (406)
.++++...|+..+||.+.
T Consensus 375 ~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEe
Confidence 488898999988877654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-09 Score=95.74 Aligned_cols=203 Identities=8% Similarity=0.108 Sum_probs=133.3
Q ss_pred cCCceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCC---
Q 015484 114 VDGEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHD--- 188 (406)
Q Consensus 114 h~~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d--- 188 (406)
+...+..+++.++ + .++++.. .+.|.+|+.. ..... .. ..... .....+.++++.+++. ++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~---~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~ 140 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEE---IA-KKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVA 140 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEE---CC-SBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCT
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEE---EE-eccCCCccccCCcCEEECCCCC-EEEEecCcccc
Confidence 4467899999998 6 5555443 4468899987 32210 00 00000 1124578999999887 66666554
Q ss_pred ------------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEee----CCCCCEEEEEecCCcEEEEECC-CCcc-
Q 015484 189 ------------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH----LKNENLFGSAGDDCQLMIWDLR-TNQT- 250 (406)
Q Consensus 189 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----p~~~~~l~~~~~dg~i~i~d~~-~~~~- 250 (406)
+.|..|+.. +.. ..+..+......++|+ |++..++++...++.|.+||+. .++.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~~-------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 141 PADYTRSMQEKFGSIYCFTTD-GQM-------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp TSCCCBTTSSSCEEEEEECTT-SCE-------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred cccccccccCCCCeEEEECCC-CCE-------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 566667654 221 1111223456788999 8443556666678899999986 3331
Q ss_pred ----cccccccC-CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 251 ----QQRVKAHE-KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 251 ----~~~~~~~~-~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
...+..+. .....++++++|. ++++...++.|.+||..++.. +..+..+...+.+++|+|+++.++++...++
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred cceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence 12223232 5578899999998 777777788999999885443 5556666678999999999975666667778
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|..|++..
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999999875
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=97.07 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=153.3
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEG 169 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v 169 (406)
.++...+.-..... ++++|+++.++++.. .++.|.+||..+.. ....+.-. ...-
T Consensus 69 ~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 69 GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCG
T ss_pred CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCC
Confidence 34455555433334 999999976555442 36789999998842 23333211 1245
Q ss_pred eEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 170 YGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
..++++|+|+ +++.+.. ++.|.++|+.+.+....+ .. .+ . ....|.+.+.|++.+.||.+.+.++..
T Consensus 140 ~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI------~v-~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 140 WMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRML------DV-PD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp GGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE------EC-CS-E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEE------EC-CC-c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence 6799999998 7666653 689999999987543222 11 11 1 122344667777888899999999976
Q ss_pred -Cccccc----ccccCCCee-EEEec-CCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEec----------CCCCCeEEEE
Q 015484 248 -NQTQQR----VKAHEKEVN-YLSFN-PYNEWVLATASSDTTVALFDMRKMTVP-LHILS----------SHTEEVFQVE 309 (406)
Q Consensus 248 -~~~~~~----~~~~~~~v~-~i~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~----------~h~~~v~~i~ 309 (406)
++.... +.....++. ...|. ++|. +++ .+.+|.|++.|+...... +..+. ........++
T Consensus 209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred CCeEEEeecceeccccccccccceeEcCCCc-EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 454221 111112221 23554 5665 434 556899999999764321 11111 0112334577
Q ss_pred EcCCCCCEEEEEeC---------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC-cEEEEEe
Q 015484 310 WDPNHETVLASSAD---------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP-WVISSVA 379 (406)
Q Consensus 310 ~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~s~~ 379 (406)
++|+++.++++... .+.|.+.|+.+. +.+..+.- ...+.++.++++++ .++++..
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------------kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------------ERLAKFEM-GHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEE-EEEECEEEECSSSSCEEEEEET
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--------------eEEEEEEC-CCCcceEEECCCCCeEEEEEcC
Confidence 78988865555432 257999999872 33333221 12588999999996 4455556
Q ss_pred CCCcEEEEeCCCccc
Q 015484 380 DDNTVQVWQMTDSIY 394 (406)
Q Consensus 380 ~dg~i~iw~~~~~~~ 394 (406)
.++.|.++|..++..
T Consensus 352 ~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 352 GDKTLYIHDAESGEE 366 (386)
T ss_dssp TTTEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 689999999998865
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-08 Score=91.38 Aligned_cols=233 Identities=11% Similarity=0.074 Sum_probs=141.2
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------C-CCCCeeEEEecCCCCCeEEEecCC------CeE
Q 015484 125 PQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------G-HDKEGYGLSWSPFKEGYLVSGSHD------NKI 191 (406)
Q Consensus 125 p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~~~d------g~i 191 (406)
++++.+++.+..++.|+|+|+.+.... .+...++. . ....-..+..+|+| +++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE----PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS----CEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC----ceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeE
Confidence 778788888999999999999753221 11122221 0 11133456777877 56665555 789
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-------------------cCCcEEEEECCCCcccc
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-------------------DDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~ 252 (406)
.++|..+.+....+.. -.....--..+-|+| +.+.+++.. .+..|.+||+.+++.+.
T Consensus 167 ~vlD~~T~~v~~~~~~---~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEI---DRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp EEECTTTCCEEEECCS---BCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred EEEECCCCeEEEEEcc---CCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 9999987654322211 001112234677899 556666653 36899999999887777
Q ss_pred ccccc--CCCeeEEEe--cCCCCcEEEEEe-----CCCcEEEEeCCCCCC-CcEE-------ecC-----------CCCC
Q 015484 253 RVKAH--EKEVNYLSF--NPYNEWVLATAS-----SDTTVALFDMRKMTV-PLHI-------LSS-----------HTEE 304 (406)
Q Consensus 253 ~~~~~--~~~v~~i~~--~~~~~~~l~~~~-----~dg~i~vwd~~~~~~-~~~~-------~~~-----------h~~~ 304 (406)
++... ......+.| +|+++..++++. .+++|.+|....+.. ..+. ... -...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 77542 123344544 999995555555 667887665443210 0000 000 0245
Q ss_pred eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC--------------CCCeeeEEeCCC
Q 015484 305 VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH--------------KAKISDFSWNKN 370 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--------------~~~v~~~~~s~~ 370 (406)
...|.++|+++.+.++.-..+.|.+||+..... ++++....-. ......+.++|+
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-----------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK-----------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTS-----------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 788999999998777777789999999974221 2233222111 013688999999
Q ss_pred CCcEEEEE
Q 015484 371 DPWVISSV 378 (406)
Q Consensus 371 ~~~~l~s~ 378 (406)
|++++++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99655554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-09 Score=97.50 Aligned_cols=212 Identities=8% Similarity=0.020 Sum_probs=133.6
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d 244 (406)
.....|+|++++. ++++...++.|++||..++... .+........ ++|+| +++.++++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~-------~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVT-------TVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEE-------EEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEE-------EeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEE
Confidence 3567999999887 7787777899999999865321 1111122233 89998 566666666655 788998
Q ss_pred CCCCcccccc----cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-----cCCCCCe--EEEEEcCC
Q 015484 245 LRTNQTQQRV----KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL-----SSHTEEV--FQVEWDPN 313 (406)
Q Consensus 245 ~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v--~~i~~~p~ 313 (406)
...+.....+ ......+.+++++|++. .|.++..++.|+.||...... ..+ .++...- ..++|+|+
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp GGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETT
T ss_pred cCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCC
Confidence 8765443333 21445678899999555 344466788999999986542 222 1222222 39999996
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee-EEEecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCC
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL-LFSHGGHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTD 391 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~ 391 (406)
+..++++-..++.|+.|+.... .............. -......-.....++++|+|. ++++-. .++.|+.|++.+
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC
Confidence 5567777788899999987641 00000000000000 000001123578999999998 788877 789999999766
Q ss_pred ccc
Q 015484 392 SIY 394 (406)
Q Consensus 392 ~~~ 394 (406)
+.+
T Consensus 355 G~v 357 (409)
T 3hrp_A 355 GYV 357 (409)
T ss_dssp TEE
T ss_pred CEE
Confidence 643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-09 Score=97.78 Aligned_cols=254 Identities=10% Similarity=0.048 Sum_probs=156.2
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEG 169 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v 169 (406)
.++...+.-...- .+.++|+++.++++.. .++.|.++|..+.. ....+.-. ....
T Consensus 109 ~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P 179 (426)
T 3c75_H 109 GRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQ 179 (426)
T ss_dssp TEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCG
T ss_pred CEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCc
Confidence 4445555544444 8999999976555542 46789999998843 23333211 1234
Q ss_pred eEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 170 YGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
..++++|+|+ +|+.+.. ++.|.+.|+.+.+....+ .. .. . ....|.+...+++.+.||.+.+.++.+
T Consensus 180 ~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I------~v-~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 180 WMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRML------DV-PD-C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp GGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE------EC-CS-E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEE------Ec-CC-c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 6889999998 7777653 689999999986543222 11 11 1 233444557777888889988888865
Q ss_pred Ccccc----cccccCCCe-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEec---C-------CCCCeEEEEEc
Q 015484 248 NQTQQ----RVKAHEKEV-NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILS---S-------HTEEVFQVEWD 311 (406)
Q Consensus 248 ~~~~~----~~~~~~~~v-~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~---~-------h~~~v~~i~~~ 311 (406)
++... .+.....++ ..+.+.+++. .++..+..+.+.+.|+......+ ..+. . .......++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 55431 222112221 2356788888 44445667899999986533100 0000 0 01112236899
Q ss_pred CCCCCEEEEEe---------CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEe-CC
Q 015484 312 PNHETVLASSA---------DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVA-DD 381 (406)
Q Consensus 312 p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~-~d 381 (406)
|+++.++++.. ..+.|.+.|..+. +.+..+... .....+.|+|+++.+++++. .+
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--------------kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--------------ERINKIELG-HEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCC--------------eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCC
Confidence 99887666543 1357999999872 333333211 24889999999984455555 69
Q ss_pred CcEEEEeCCCcccC
Q 015484 382 NTVQVWQMTDSIYR 395 (406)
Q Consensus 382 g~i~iw~~~~~~~~ 395 (406)
+.|.++|+.+....
T Consensus 393 ~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 QTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEE
Confidence 99999999988653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-09 Score=105.68 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=130.5
Q ss_pred CCCCeeEEEecCCCCCeEEE-----ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-
Q 015484 165 HDKEGYGLSWSPFKEGYLVS-----GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC- 238 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg- 238 (406)
|...+.+++|||+|+ +|+- |+....|++||+.+++... ..+. ......++|+ ++ +.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~--~~k~~~~~Ws-Dg-~~l~y~~~~~~ 196 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLE-----TPLK--DVKFSGISWL-GN-EGFFYSSYDKP 196 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEE-----EEEE--EEESCCCEEE-TT-TEEEEEESSCC
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCc-----cccC--CceeccEEEe-CC-CEEEEEEecCc
Confidence 455788899999998 6663 3334579999999875311 0111 1113567899 55 4444555443
Q ss_pred ------------cEEEEECCCCccc----ccccc-cCCCeeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCCcEEe
Q 015484 239 ------------QLMIWDLRTNQTQ----QRVKA-HEKEVNYLSFNPYNEWVLATASSD---TTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 239 ------------~i~i~d~~~~~~~----~~~~~-~~~~v~~i~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 298 (406)
.|++|++.++... ..... +...+.++.|+|+++.++++.+.+ +.|+++|+.+.......+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 4999999876532 22222 344578899999999555555432 489999998765446667
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEeCC---CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 299 SSHTEEVFQVEWDPNHETVLASSADD---RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 299 ~~h~~~v~~i~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
..+....... |+++++.+++.+..+ +.|..+|+...... ....+..|...+. .|++++.+++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------------HWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCE--EEEEETTEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------ccEEEecCCCCEE--EEEEECCEEE
Confidence 6666666665 667777666666554 67899998763211 0112233444444 8889888766
Q ss_pred EEEeCCC--cEEEEeCCCcc
Q 015484 376 SSVADDN--TVQVWQMTDSI 393 (406)
Q Consensus 376 ~s~~~dg--~i~iw~~~~~~ 393 (406)
++...++ .|++|++.++.
T Consensus 342 ~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEEEETTEEEEEEECTTSCE
T ss_pred EEEEECCeeEEEEEECCCCe
Confidence 6666665 58888887653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-08 Score=88.15 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=128.4
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..+..|+|++..++++...++.|..||..++.. ..+. ....+.+++|+| +++++++ +.+ .|.+||..++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~~-~~~~v~~i~~~~-dg~l~v~-~~~-gl~~~d~~~g 119 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-------TVHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATG 119 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------EEEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-------EEEE-CCCcceEEEEeC-CCeEEEE-ECC-CEEEEECCCC
Confidence 457899998664777777889999999876532 1111 245789999998 5666654 344 4999999877
Q ss_pred ccccccc----ccCCCeeEEEecCCCCcEEEEEeC------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 249 QTQQRVK----AHEKEVNYLSFNPYNEWVLATASS------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 249 ~~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
+...... .....++.++++|+|. ++++... .+.|..++ .+. +..+..+......++|+|+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEE
T ss_pred cEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEE
Confidence 6432211 1123588999999998 5554432 24566666 322 333333334578999999998656
Q ss_pred EEEeCCCcEEEEeCCC-CC-cccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 319 ASSADDRRLMVWDLNR-IG-DEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+.++.|.+||+.. .+ ... .......+......+..++++++|. +.++...++.|.+|+....
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~--------~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~ 261 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTG--------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN 261 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSS--------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC
T ss_pred EEECCCCEEEEEEcccccCCccc--------CceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC
Confidence 6666788999999851 11 100 0122223333344577899999998 6666666788999998544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-09 Score=94.54 Aligned_cols=244 Identities=9% Similarity=-0.065 Sum_probs=148.8
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCee
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKT---------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGY 170 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 170 (406)
+++..+.-...- .+.++|+++.+.++.+ .++.|.+||..+. +....+..+ .....
T Consensus 57 ~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 57 VTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------LPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------CEEEEEEETTSCSCCBSCCTT
T ss_pred eEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------CEEEEEECCCccccccCCCcc
Confidence 444455433333 7999999966555442 3688999999984 334454322 12356
Q ss_pred EEEecCCCCCeEEEecC--CCeEEE--EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 171 GLSWSPFKEGYLVSGSH--DNKICL--WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
.++++|+|+ +++.+.. +..|.+ +|+.+ ...+ .. .. ++...|.+...+++.+.||.+.+.|+.
T Consensus 128 ~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i------~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 128 IIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLT------KS-AS---CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp SEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEE------EC-SS---CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred eEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEE------EC-CC---ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 899999999 7776654 467888 88866 1111 11 11 122345566777778889999999988
Q ss_pred C-----Ccccc----cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecC-------C---CCCeE
Q 015484 247 T-----NQTQQ----RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSS-------H---TEEVF 306 (406)
Q Consensus 247 ~-----~~~~~----~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-------h---~~~v~ 306 (406)
+ ++... .+.....+. . .+++. .++..+. +.+.+.|+...... +..+.. + .....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 6 43321 122223333 3 55565 4444445 89999998653211 111110 0 01112
Q ss_pred EEEEcCCCCCEEEEEe-C-------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 307 QVEWDPNHETVLASSA-D-------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 307 ~i~~~p~~~~~l~s~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
.+.++|+++.++++.. . ++.+.++|+.+.. .+..+.... ....++|+|+|++++++.
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------------vv~~i~vg~-~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------------TSGPISNGH-DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------------EEECCEEEE-EECEEEECCSSSCEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------------EEEEEECCC-CcceEEECCCCCEEEEEc
Confidence 2689999987665544 2 2356699998732 222222111 488999999998778888
Q ss_pred e-CCCcEEEEeCCCccc
Q 015484 379 A-DDNTVQVWQMTDSIY 394 (406)
Q Consensus 379 ~-~dg~i~iw~~~~~~~ 394 (406)
. .++.|.++|+.+...
T Consensus 333 ~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 333 SAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ETTTTEEEEEESSSCEE
T ss_pred cCCCCeEEEEECCCCcE
Confidence 8 699999999998754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-07 Score=85.00 Aligned_cols=232 Identities=8% Similarity=-0.047 Sum_probs=133.7
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeEEEEeCCCccCCceeeee
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.|.++|..+.. ....+.....+ .++++|+++ +++.+. .++.|.+||..+.+....+...
T Consensus 48 ~v~v~D~~t~~--------~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 48 QQWVLDAGSGS--------ILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred EEEEEECCCCe--------EEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC
Confidence 78999998732 23444433333 999999998 776664 3678999999875433222110
Q ss_pred --eeeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCccccc-ccccCCCeeEEEecCCCCcEEEEEeCCCcE
Q 015484 209 --HVYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNEWVLATASSDTTV 283 (406)
Q Consensus 209 --~~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i 283 (406)
.... +......+.|+| ++++++++. . ++.|.++| .+++.+.. +... . ++.+.|.+...+++.+.||.+
T Consensus 117 ~~~~~~-~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~ 189 (373)
T 2mad_H 117 DAPRFD-VGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGL 189 (373)
T ss_pred Cccccc-cCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCE
Confidence 0000 012345789999 455555555 3 57899999 99887766 5422 1 245567666577788889999
Q ss_pred EEEeCCCCCCCcEEec-----CCCCC-eEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-ccccCCCCeeEEEec
Q 015484 284 ALFDMRKMTVPLHILS-----SHTEE-VFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE-LDAEDGPPELLFSHG 356 (406)
Q Consensus 284 ~vwd~~~~~~~~~~~~-----~h~~~-v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 356 (406)
.++|. .++. ..... ....+ .....+.+++..+++.. ..+.+.+.|+......... ........ ... .
T Consensus 190 ~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~-~~~--~ 263 (373)
T 2mad_H 190 AKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGR-KAD--T 263 (373)
T ss_pred EEEEC-CCcE-EEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcc-ccc--c
Confidence 99999 6543 21111 11122 23345666665544444 6789999998652211000 00000000 000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEe---------CCCcEEEEeCCCccc
Q 015484 357 GHKAKISDFSWNKNDPWVISSVA---------DDNTVQVWQMTDSIY 394 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~---------~dg~i~iw~~~~~~~ 394 (406)
-.......+.++|+++.++++.. .++.|.++|+.+...
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 01122344788999885555443 135799999987654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-07 Score=76.90 Aligned_cols=230 Identities=9% Similarity=-0.024 Sum_probs=140.5
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
+.|+.+++....... ......+........+++|++.+..++++-..++.|..+++...... .........
T Consensus 10 ~~I~~~~~~g~~~~~---~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~------~~~~~~~~~ 80 (267)
T 1npe_A 10 GKIERLPLERNTMKK---TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT------TIIRQDLGS 80 (267)
T ss_dssp EEEEEEEESSSCBCG---GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE------EEECTTCCC
T ss_pred CeEEEEEecCccccc---ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE------EEEECCCCC
Confidence 468888887632110 00011122122456799999976635556666789999998754321 111122246
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCCc
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS--DTTVALFDMRKMTVPL 295 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~ 295 (406)
...++++|.++.++++-...+.|.++++..................++++|++..++++... .+.|..+++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 78899998667777777778899999987543222222222456899999976635554433 46888888764322 1
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-.....++++|+++.++++-...+.|.++|+.... ......+ ......++.. +.+++
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--------------~~~~~~~-~~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--------------RRKVLEG-LQYPFAVTSY--GKNLY 222 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--------------EEEEEEC-CCSEEEEEEE--TTEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--------------eEEEecC-CCCceEEEEe--CCEEE
Confidence 12222335689999999887777777778899999986411 1111111 2234566654 34466
Q ss_pred EEEeCCCcEEEEeCCCccc
Q 015484 376 SSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~~ 394 (406)
++....+.|.+++..++..
T Consensus 223 va~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEETTTTEEEEEETTTTEE
T ss_pred EEECCCCeEEEEeCCCCCc
Confidence 6666678999999987643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=90.35 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=128.6
Q ss_pred CCeeEEEecCCCCCeEEEec--CCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCCCCCEEEEEec-----CC
Q 015484 167 KEGYGLSWSPFKEGYLVSGS--HDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLKNENLFGSAGD-----DC 238 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg 238 (406)
.....++++++|+ ++++.. .++.++||.+..+.. ..+... .....+-..+..+++++ +++++++-.. ++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCC
Confidence 5788999999988 777753 234355665543211 111000 01123446789999998 4666665443 57
Q ss_pred cEEEEECCCCcccccccc------cCCCeeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCCcEEecCC--------
Q 015484 239 QLMIWDLRTNQTQQRVKA------HEKEVNYLSFNPYNEWVLATAS---SDTTVALFDMRKMTVPLHILSSH-------- 301 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h-------- 301 (406)
.|.+||+.+++.+..+.. +...+..++++|++..++++.. .++.|.+||+.++.. ...+..|
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCccccccc
Confidence 899999998886555432 2245689999987654556655 578999999876442 2222221
Q ss_pred ---------------------CCCeEEEEEcCCCCCEEEEEeCCC-cEEEEeCCCCCcccccccccCCCCeeEEEecCCC
Q 015484 302 ---------------------TEEVFQVEWDPNHETVLASSADDR-RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359 (406)
Q Consensus 302 ---------------------~~~v~~i~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 359 (406)
...+..|+|+|+++. |+.+..++ .+..++............... ... ...++.
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~ 247 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELG--SKI--ERYSEK 247 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHH--TTC--EEEEEC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhh--cce--EecccC
Confidence 123688999999975 55555554 454444321000000000000 000 111233
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.....++++++|. ++++...++.|.+|+..++
T Consensus 248 g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 248 PICDGISIDKDHN-IYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp CSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEECCCCC-EEEEccCCCeEEEEECCCC
Confidence 4567899999998 7888888899999999444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-07 Score=83.40 Aligned_cols=206 Identities=12% Similarity=0.075 Sum_probs=131.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC 238 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 238 (406)
...+........+..|+++++.+++++..++.|..|+.. +. ...+..+...+..+++++ +++++++...++
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~ 107 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDA-QQRLVHCEHGRR 107 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECT-TSCEEEEETTTT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECC-CCCEEEEECCCC
Confidence 444555566678999999887567788888999999873 32 122334556789999998 567776655668
Q ss_pred cEEEEECCCCccccccc---c-cCCCeeEEEecCCCCcEEEE----EeC-------------CCcEEEEeCCCCCCCcEE
Q 015484 239 QLMIWDLRTNQTQQRVK---A-HEKEVNYLSFNPYNEWVLAT----ASS-------------DTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~---~-~~~~v~~i~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~ 297 (406)
.|.+|+.. ++...... . ....++.++++|+|. ++++ |.. .+.|..||..++.. ..
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~ 183 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QR 183 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EE
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EE
Confidence 89999976 44321111 1 123467899999998 6665 332 24677787765443 22
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCC------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADD------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND 371 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 371 (406)
+. .....+.++|+|+++. |+.+... +.|.+|++.... ... ..... .........++++++|
T Consensus 184 ~~-~~~~p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~--l~~-------~~~~~--~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 184 MA-DLDHPNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGA--LHD-------RRHFA--SVPDGLPDGFCVDRGG 250 (305)
T ss_dssp EE-EESSEEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTE--EEE-------EEEEE--CCSSSCCCSEEECTTS
T ss_pred Ee-cCCCCcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCC--ccC-------CeEEE--ECCCCCCCeEEECCCC
Confidence 22 3456789999999985 4444443 789999986421 000 01111 1123446789999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCcc
Q 015484 372 PWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 372 ~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
. +.++. .+ .|.+|+.....
T Consensus 251 ~-lwv~~-~~-gv~~~~~~g~~ 269 (305)
T 3dr2_A 251 W-LWSSS-GT-GVCVFDSDGQL 269 (305)
T ss_dssp C-EEECC-SS-EEEEECTTSCE
T ss_pred C-EEEec-CC-cEEEECCCCCE
Confidence 8 55544 44 49999986553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-06 Score=74.85 Aligned_cols=224 Identities=8% Similarity=0.041 Sum_probs=140.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..++|.|++..++++-...+.|.+++..... .............++++++.+..++++-...+.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 3578999999776777777778899999987621 11222222246789999987663555656678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec--CCcEEEEECCCCcccccc-cccCCCeeEEEecCCCCc
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD--DCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 272 (406)
++.... ..+ ..........++++|.++.++++... .+.|..+++.... ...+ .........++++|++..
T Consensus 108 ~~g~~~-~~~-----~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 108 MDGTQR-RVL-----FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp TTSCSC-EEE-----ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTE
T ss_pred cCCCCE-EEE-----EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCE
Confidence 864321 111 11112457889999865666655543 4688888876432 2222 122345788999998775
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++++-...+.|.++|+..... ..... .......++.. +..++++....+.|.++|..+ .+.+
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~--------------g~~~ 242 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGR-RKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI--------------SKEM 242 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEE-EEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT--------------TEEE
T ss_pred EEEEECCCCEEEEEecCCCce-EEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCC--------------CCce
Confidence 666666678999999875321 22222 22345677664 445666666778999999875 2333
Q ss_pred EEecCC-CCCeeeEEeCCCCC
Q 015484 353 FSHGGH-KAKISDFSWNKNDP 372 (406)
Q Consensus 353 ~~~~~h-~~~v~~~~~s~~~~ 372 (406)
..+... ......+++.|++.
T Consensus 243 ~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 243 DTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEECCSSCCCCCCEEEECSCC
T ss_pred EEEccccccccceeeecCccC
Confidence 333322 22366777777653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=7e-10 Score=100.82 Aligned_cols=179 Identities=11% Similarity=0.029 Sum_probs=94.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
..+++++.||.|+.||..++.. ...+.. ..+.+..+..++. .+++++.||.|..||..+++....+.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~--------~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~-- 76 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSI--------KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLP-- 76 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCE--------EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECS--
T ss_pred CEEEEEcCCCEEEEEECCCCCE--------EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeee--
Confidence 4788899999999999987433 344443 3455555555565 78888899999999998875432221
Q ss_pred eeeeccC-ccEE-EEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEE
Q 015484 209 HVYEAHE-SVVE-DVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALF 286 (406)
Q Consensus 209 ~~~~~~~-~~i~-~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vw 286 (406)
.+. ..+. +..+. .+..+++++.++.|+.||.++++.+..+..+. ...++|.+. .+++++.++.|+.|
T Consensus 77 ----~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~ 145 (369)
T 2hz6_A 77 ----FTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMY 145 (369)
T ss_dssp ----CCHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECC
T ss_pred ----ccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEEE
Confidence 111 1111 01111 24456678889999999999999877765433 234566666 78888889999999
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEcCCC---CCEEEEEeCCCcEEEEeCCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWDPNH---ETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~p~~---~~~l~s~~~dg~i~iwd~~~~ 335 (406)
|.++++. +..+..+. .....+.++. .. +++++.||.|..||..+.
T Consensus 146 d~~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~-v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 146 DTKTREL-RWNATYFD--YAASLPEDDVDYKMS-HFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CSSSSSC-CCEEEEEE--ECCBCCCCCTTCCCC-EEEEETSCEEEEECTTTC
T ss_pred ECCCCCE-EEeEeccc--ccCccccCCccccce-EEEECCCCEEEEEECCCC
Confidence 9998765 33322111 1122333321 33 667888999999999874
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-09 Score=96.95 Aligned_cols=245 Identities=11% Similarity=0.089 Sum_probs=151.0
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEe-c-CCCCCeEEEec----------------
Q 015484 126 QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSW-S-PFKEGYLVSGS---------------- 186 (406)
Q Consensus 126 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-~-~~~~~~l~s~~---------------- 186 (406)
+|+.++++...++.|.+.|+...+. ...+. ........+++ + |+++ ++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~--------~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKC--------DAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEE--------EEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcCCCCEEEEEECCCceE--------eeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccc
Confidence 7766677666778899999998432 22222 12345778887 4 7887 777773
Q ss_pred --CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---------------------------
Q 015484 187 --HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--------------------------- 237 (406)
Q Consensus 187 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------------------------- 237 (406)
.++.+.+.|..+.+...+ +.-. +....++++|+ ++++++.+.+
T Consensus 171 ~~~~~~vtvID~~t~~v~~q------I~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQ------VLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEE------EEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccCceEEEEECCCCeEEEE------EEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 356789999887533221 1111 13455667874 4444444422
Q ss_pred -----------CcEEEEECCC--Ccc-cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC-----------
Q 015484 238 -----------CQLMIWDLRT--NQT-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT----------- 292 (406)
Q Consensus 238 -----------g~i~i~d~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 292 (406)
+.|.+.|.++ ++. +..+.. .....++.++|+|+++++++..+.+|.++|+.+..
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 2477778776 433 334432 23457899999999777777778899999998642
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCC-----CeeeEEe
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKA-----KISDFSW 367 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~ 367 (406)
..+.... -......++|+|+| +..++...|+.|.+||+........ .+.....+.....|.. .-..+..
T Consensus 322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~----g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYA----GEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHH----TCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhc----ccccceeEEEeecccccccceeccceEe
Confidence 1122222 23568999999999 6777888999999999875111000 0001234444444432 2245577
Q ss_pred CCCCCcEEEEEeCC-CcE-----------EEEeCCCccc
Q 015484 368 NKNDPWVISSVADD-NTV-----------QVWQMTDSIY 394 (406)
Q Consensus 368 s~~~~~~l~s~~~d-g~i-----------~iw~~~~~~~ 394 (406)
+|+|+|++++.... ..+ +++|++++.+
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 99999766555433 234 8899976654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-07 Score=84.37 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=133.1
Q ss_pred EEEec--CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee------c-cCccEEEEEeeCCCCCEEEEEecC----
Q 015484 171 GLSWS--PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE------A-HESVVEDVSWHLKNENLFGSAGDD---- 237 (406)
Q Consensus 171 ~l~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~i~~i~~~p~~~~~l~~~~~d---- 237 (406)
+..++ ++++.++++|..+++|.++|+.+...... ....+. . .......+...| ++ +++++..+
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~--~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK--IIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGE 161 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE--EEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSC
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCce--eeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCC
Confidence 33446 67775677788899999999975432211 122221 1 112445667788 44 77666555
Q ss_pred --CcEEEEECCCCcccccccccC---CCeeEEEecCCCCcEEEEEe-------------------CCCcEEEEeCCCCCC
Q 015484 238 --CQLMIWDLRTNQTQQRVKAHE---KEVNYLSFNPYNEWVLATAS-------------------SDTTVALFDMRKMTV 293 (406)
Q Consensus 238 --g~i~i~d~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~ 293 (406)
|.|.++|.++.+.+.++.... ..-..+.|+|+++ .+++.. ...+|.+||+.+.+
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k- 239 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK- 239 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-
Confidence 789999999999888775322 2234588899998 666664 35799999998753
Q ss_pred CcEEecCC-C-CCeEEEEE--cCCCCCEEEEEe-----CCCcEEEEeCCCCCcccccccccCCCCe-eEEEe-------c
Q 015484 294 PLHILSSH-T-EEVFQVEW--DPNHETVLASSA-----DDRRLMVWDLNRIGDEQLELDAEDGPPE-LLFSH-------G 356 (406)
Q Consensus 294 ~~~~~~~h-~-~~v~~i~~--~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-------~ 356 (406)
.+.++... . .....+.| +|++++.++++- .+++|.+|.... +..... ..-+.+.. ....+ .
T Consensus 240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~-~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAE-KVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEE-EEEEECCEECCSSCCGGGGGGT
T ss_pred EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEE-EEEeCCCccccccccccccccc
Confidence 35555542 1 23455656 999987666666 788998887653 211000 00000000 00000 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+-......+.+|++|+++.++.-..+.|.+|++.+
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 00235789999999998888877789999999863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-07 Score=77.02 Aligned_cols=207 Identities=15% Similarity=0.105 Sum_probs=138.9
Q ss_pred CeEEEEEeecCCc--eeEEEEcCCCCcEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCC
Q 015484 105 KVEIAQKIRVDGE--VNRARCMPQKPNLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKE 179 (406)
Q Consensus 105 ~~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 179 (406)
..+++..+.|... ...+.|+|++ .+.++.+. ++.|+++|..+... ...+.- .......+++. +.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v--------~~~i~l~~~~fgeGi~~~--g~ 76 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKV--------ENIHKMDDSYFGEGLTLL--NE 76 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCE--------EEEEECCTTCCEEEEEEE--TT
T ss_pred CceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCE--------EEEEecCCCcceEEEEEe--CC
Confidence 4677888899865 5799999986 55555443 67999999998433 333321 11122355555 44
Q ss_pred CeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-
Q 015484 180 GYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE- 258 (406)
Q Consensus 180 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 258 (406)
...++.-.++.+.++|..+.+... .+...... ...+++++..++++ ..++.|.++|..+.+.+..+....
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~------~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIK------NFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEE------EEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEEEEecCCEEEEEECCCCcEEE------EEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCC
Confidence 355666678999999998764332 22211011 12344545666655 468899999999988777764221
Q ss_pred ----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-------------CCCeEEEEEcCCCCCEEEEE
Q 015484 259 ----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-------------TEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 259 ----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-------------~~~v~~i~~~p~~~~~l~s~ 321 (406)
..++.+.|. ++. +++....++.|.+.|..+++. +..+... ....+.|+|+|+++.+++++
T Consensus 148 ~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 148 GHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp TEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 246778888 564 666665678999999998765 5554421 13579999999998899999
Q ss_pred eCCCcEEEEeCCC
Q 015484 322 ADDRRLMVWDLNR 334 (406)
Q Consensus 322 ~~dg~i~iwd~~~ 334 (406)
...+.+.+.++..
T Consensus 225 k~~~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLWPKLFEIKLHL 237 (266)
T ss_dssp TTCSEEEEEEEEE
T ss_pred CCCCeEEEEEEec
Confidence 9999999998875
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-07 Score=81.88 Aligned_cols=218 Identities=9% Similarity=0.005 Sum_probs=137.1
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+..++.++.|..+|.. ... ......+...+.++...+++ .|..++.++.|..+|.. +... .
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~--------~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~------~ 170 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTE--------KWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEK------W 170 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCE--------EEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEE------E
T ss_pred EEEEEecCCEEEEEcCC-CCE--------EEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEe------E
Confidence 46777888889999887 321 22333344445666666555 47778788999999987 4321 1
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR 289 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~ 289 (406)
.+......+.++...+ ++.++ .++ +.|..+| .+++...........+.++...+++. |..++.++.|..+|..
T Consensus 171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPD 243 (330)
T ss_dssp EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTT
T ss_pred EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCC
Confidence 2222344566666655 45555 444 7899999 67766555554556688888888876 5567777888888743
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+.. +..+......+..+...+++. |..++.+|.|..+|... ..+..+......+.++...+
T Consensus 244 -g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~~g---------------~~~~~~~~~~~~~~~~~~d~ 304 (330)
T 3hxj_A 244 -GTE-KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINPDG---------------TEKWNFETGSWIIATPVIDE 304 (330)
T ss_dssp -SCE-EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECTTS---------------CEEEEEECSSCCCSCCEECT
T ss_pred -CCE-eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECCCC---------------cEEEEEEcCCccccceEEcC
Confidence 232 444444344445566666664 67788888999998532 22223333345677888888
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 370 NDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++. |..++.+|.+++.......
T Consensus 305 ~g~--l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 305 NGT--IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp TCC--EEEECTTSCEEEEEC----
T ss_pred CCE--EEEEcCCCeEEEEeccccc
Confidence 887 4557889999988766544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-07 Score=83.74 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=141.7
Q ss_pred EEcCCCCcEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------C
Q 015484 122 RCMPQKPNLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------H 187 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~ 187 (406)
...|++..++++-.. ++.|.+.|..+.. .+..+.....+ .++++|+++ +++.++ .
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--------v~~~I~vG~~P--~va~spDG~-~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--------VIGMIDGGFLP--NPVVADDGS-FIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSS-CEEEEEEEEEETTEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--------EEEEEECCCCC--cEEECCCCC-EEEEEcccccccccCCC
Confidence 345777555555443 6799999998742 24455544444 499999999 665554 3
Q ss_pred CCeEEEEeCCCccCCceeeeee-eeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCcccccccccCCCeeEE
Q 015484 188 DNKICLWDVSALAQDKVIDAMH-VYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
++.|.+||..+.+....+..-. ...........+.|+|+ ++.++++. . ++.|.++|+.+++.+.++.... +.
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~ 182 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CY 182 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EE
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cc
Confidence 6789999998865332221100 00000124567899995 55555554 3 6899999999999888774322 12
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC----CCCeE-EEEEc-CCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH----TEEVF-QVEWD-PNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~-~i~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
...|.+...+++.+.||.+.+.++............+ ..++. ...|. ++|+ ++ -.+.+|.|.+.|+......
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~-~vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LV-WPTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EE-EEBTTSEEEEEECTTSSCE
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EE-EEeCCCEEEEEECCCCcce
Confidence 2234444467788889999999987633322211111 12221 24564 5664 33 3566899999998753211
Q ss_pred cccccccCCCCeeEEEe----cC-CCCCeeeEEeCCCCCcEEEEEeC---------CCcEEEEeCCCccc
Q 015484 339 QLELDAEDGPPELLFSH----GG-HKAKISDFSWNKNDPWVISSVAD---------DNTVQVWQMTDSIY 394 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~----~~-h~~~v~~~~~s~~~~~~l~s~~~---------dg~i~iw~~~~~~~ 394 (406)
.... .. ++.. .+ .......+++++++..++++... .+.|.+.|+.++..
T Consensus 261 v~~~------~~-~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 261 FLPA------VE-ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp ECCC------EE-SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eecc------ee-ccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 0000 00 0000 00 11233457778888855554331 24688888888754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-10 Score=101.89 Aligned_cols=182 Identities=12% Similarity=0.008 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 178 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
+. .+++++.||.|..||..+++..... .. ..+.+..+.. ++.++++++.||.|+.||.++++.+..+..+
T Consensus 9 ~~-~v~~gs~dg~v~a~d~~tG~~~W~~------~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 9 ET-LLFVSTLDGSLHAVSKRTGSIKWTL------KE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp TT-EEEEEETTSEEEEEETTTCCEEEEE------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred CC-EEEEEcCCCEEEEEECCCCCEEEEe------cC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 44 8999999999999999988643222 22 2343444444 4567777789999999999988875544322
Q ss_pred CC-Cee-EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 258 EK-EVN-YLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 258 ~~-~v~-~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
.. .+. +..+. .+. .+++++.++.|+.||.++++. +..+..+. ...++|.+. .+++++.|+.|+.||..+.
T Consensus 79 ~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 79 IPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp HHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred CccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCC
Confidence 11 110 01111 233 677888899999999998765 44444332 234567665 5888888999999999874
Q ss_pred CcccccccccCCCCeeEEEecCCCCCeeeEEeCCCC---CcEEEEEeCCCcEEEEeCCCccc
Q 015484 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND---PWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..... +.... .....++++. . .++.++.||.|+.||..++..
T Consensus 151 ~~~W~------------~~~~~----~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 151 ELRWN------------ATYFD----YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp SCCCE------------EEEEE----ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCE
T ss_pred CEEEe------------Eeccc----ccCccccCCccccc-eEEEECCCCEEEEEECCCCcE
Confidence 32211 11111 1222333321 3 356678899999999988753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-07 Score=86.30 Aligned_cols=247 Identities=9% Similarity=-0.003 Sum_probs=141.1
Q ss_pred CCCcEEEEEeCC----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec----------CCCeE
Q 015484 126 QKPNLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS----------HDNKI 191 (406)
Q Consensus 126 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i 191 (406)
++..++++...+ +.|.++|..+.. .+..+..-..+ .++++|+++ +|+.+. .++.|
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~--------vv~~I~vG~~P--gia~SpDgk-~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGR--------ILGMTDGGFLP--HPVAAEDGS-FFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTE--------EEEEEEECSSC--EEEECTTSS-CEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCE--------EEEEEECCCCC--ceEECCCCC-EEEEEeccccccccCCCCCEE
Confidence 443444444433 799999998843 24455443445 899999998 666654 46789
Q ss_pred EEEeCCCccCCceeeee--eeeeccCccEEEEEeeCCCCCEEEEEe-c-CCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 192 CLWDVSALAQDKVIDAM--HVYEAHESVVEDVSWHLKNENLFGSAG-D-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
.++|..+.+....+..- ..+ ........+.|+| ++++++++. . ++.|.+.|+.+++.+..+.... +....
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~-~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~ 225 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRF-LVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIF 225 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCC-CBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEE
T ss_pred EEEECCCCcEEEEEECCCcccc-ccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeec
Confidence 99999886543222110 000 0012345789999 455555554 3 6889999999998877775322 13344
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCCCcEE----ecCCCCCe-EEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc-
Q 015484 268 PYNEWVLATASSDTTVALFDMRKMTVPLHI----LSSHTEEV-FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE- 341 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~h~~~v-~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 341 (406)
|.+...+++.+.||.+.+.+....+. ... +.....++ ..+.+.+++.. ++..+..+.|.+.|+.........
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCEEECCC
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCceEEeee
Confidence 55544677777888888888844332 211 11111221 23567888876 444566889999998652211000
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---------CCcEEEEeCCCccc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---------DNTVQVWQMTDSIY 394 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---------dg~i~iw~~~~~~~ 394 (406)
............. .......++++|+++.++++... ++.|.+.|+.+...
T Consensus 304 ~~~~~~~~i~~g~---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv 362 (426)
T 3c75_H 304 IEALTEAERADDW---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER 362 (426)
T ss_dssp EESSCTTTGGGTE---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eeecccccccccc---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence 0000000000000 01112346899998865655431 35799999988754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-06 Score=73.48 Aligned_cols=241 Identities=6% Similarity=0.051 Sum_probs=141.3
Q ss_pred CCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 104 PKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 104 ~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
...++...+.-......++|.|++ .++++-...+.|..|+..... ...........++++.+++. +++
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~----------~~~~~~~~~p~gia~~~dG~-l~v 87 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ----------QIHATVEGKVSGLAFTSNGD-LVA 87 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE----------EEEEECSSEEEEEEECTTSC-EEE
T ss_pred CCceEeEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCce----------EEEEeCCCCceeEEEcCCCc-EEE
Confidence 345566666655778899999988 577776678899999876521 11112234678999999887 655
Q ss_pred EecCC-C-eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cc--------
Q 015484 184 SGSHD-N-KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQ-------- 252 (406)
Q Consensus 184 s~~~d-g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~-------- 252 (406)
+.... + .|..++..++.. ..+.... .......++..+ ++..+++-..++.|..+|...++. +.
T Consensus 88 ad~~~~~~~v~~~d~~~g~~----~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 88 TGWNADSIPVVSLVKSDGTV----ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EEECTTSCEEEEEECTTSCE----EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EeccCCcceEEEEcCCCCeE----EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 54332 2 466677665432 1111111 122234444443 455555555688999999875421 11
Q ss_pred -cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 253 -RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK-MTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 253 -~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.....-...+.+ +|++..++++-...+.|..||+.. +.. ....+.. ......++++++|. ++++....+.|.+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~ 237 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVR 237 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEE
Confidence 001111234555 777875666666778999999874 211 1122211 13456789999995 6767667889999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC---CCCCcEEEEEe
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN---KNDPWVISSVA 379 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~~l~s~~ 379 (406)
+|... .. ..+..........++++|. |++..++++..
T Consensus 238 ~~~~G--~~-----------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 238 IAPDR--ST-----------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECTTC--CE-----------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ECCCC--CE-----------EEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 98642 10 1111122223458899998 78775666654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-05 Score=70.09 Aligned_cols=242 Identities=8% Similarity=-0.003 Sum_probs=146.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
....+|.+..+.. .++++ . ...|+..++.... ...+......+.+++|++.+..++++-...+.|..+
T Consensus 33 ~d~~~C~~~~~~~-~ll~~-~-~~~I~~i~~~g~~---------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA-N-RIDIRQVLPHRSE---------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE-C-BSCEEEECTTSCC---------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcccccccCc-eeEee-c-ccceEEEeCCCCe---------eEEeecCCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 3445566655533 33433 3 3447777776521 222222334578999998666355555567899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++...... ............+++.+.++.++++-...+.|.+.++........+.........++++|.+..++
T Consensus 101 ~~~g~~~~------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 101 NLNGSNVE------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp ETTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred ecCCCCce------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEE
Confidence 98764321 111112234567888876777877777788999999875443222233335578999999777566
Q ss_pred EEEeCC-CcEEEEeCCCCCCCcEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeE
Q 015484 275 ATASSD-TTVALFDMRKMTVPLHIL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELL 352 (406)
Q Consensus 275 ~~~~~d-g~i~vwd~~~~~~~~~~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (406)
++-... +.|..+++.... ...+ ...-...+.|+++|++..+.++-...+.|..+|+..... ..+
T Consensus 175 ~td~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~------------~~~ 240 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------KAV 240 (349)
T ss_dssp EEECSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEE
T ss_pred EeccCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce------------EEE
Confidence 665555 789999887532 2222 223446799999998777777777788899999864111 111
Q ss_pred EEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 353 ~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..........+++. .+. ++++-...+.|...+..++
T Consensus 241 --~~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 241 --ISQGLPHPFAITVF-EDS-LYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp --ECSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEETTTC
T ss_pred --EeCCCCCceEEEEE-CCE-EEEecCCCCeEEEEEccCC
Confidence 11123345667773 333 6666666677777764433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-06 Score=72.54 Aligned_cols=243 Identities=9% Similarity=0.008 Sum_probs=141.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--------------------CCCCeeEEEec
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--------------------HDKEGYGLSWS 175 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--------------------h~~~v~~l~~~ 175 (406)
.....++|.+++ .++.++..++.|..|+...... ..+.. ......++++.
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGF---------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN 88 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCE---------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCce---------EEEecccccccccccccccchhccccCCCCceEEEc
Confidence 456778899987 5677788889999998765211 11110 01346889999
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEec-----------------C
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGD-----------------D 237 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~-----------------d 237 (406)
+++. .|+.+...+.|..+|..++.. ..+. ....+ .....+.+++.+.+++++++-.. +
T Consensus 89 ~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~--~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 89 LQNN-QLYIVDCYYHLSVVGSEGGHA-TQLA--TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTTT-EEEEEETTTEEEEECTTCEEC-EEEE--SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCCC-cEEEEECCCCEEEEeCCCCEE-EEec--ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 7333 455554455588888765321 1110 01111 11346788998723566655432 3
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~ 316 (406)
|.|..+|..+++...... .....+.++++|++..++++-+..+.|.+|++..... ....+....+ ...+++.++|.
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~- 241 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH- 241 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-
Confidence 678888887665322221 2234567999999884455555668999999875321 1122211223 78899999996
Q ss_pred EEEEEeC----------CCcEEEEeCCCCCcccccccccCCCCeeEEEecCC----CCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 317 VLASSAD----------DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH----KAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 317 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
+.++... .+.|..+|... +.+..+... ...++.+++ .++. ++++....+
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~G---------------~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~ 304 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEFG---------------NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHG 304 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTTS---------------CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCS
T ss_pred EEEEecCcccccccCCCccEEEEECCCC---------------CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCC
Confidence 5555443 45677777542 222222211 234666666 3455 677766788
Q ss_pred cEEEEeCCCc
Q 015484 383 TVQVWQMTDS 392 (406)
Q Consensus 383 ~i~iw~~~~~ 392 (406)
.|..+++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 8999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.7e-07 Score=76.60 Aligned_cols=196 Identities=10% Similarity=0.035 Sum_probs=131.0
Q ss_pred eeEEEecCCCCCeEEEecC--CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 169 GYGLSWSPFKEGYLVSGSH--DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
...++|++++. +.++.+. ++.|.++|+.+++....+. +.. ......+++. ++.++++.-.++.+.++|..
T Consensus 23 ~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~-~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 23 TQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK----MDD-SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE----CCT-TCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred cccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe----cCC-CcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 57999998754 5554443 6899999999875433221 111 1123345665 46777777789999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC-----CCCeEEEEEcCCCCCEEEEE
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH-----TEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-----~~~v~~i~~~p~~~~~l~s~ 321 (406)
+.+.+.++......- ..+++++..++++ ..++.|.++|..+.+. +..+... -..++.+.|. ++ .+.+..
T Consensus 95 t~~v~~~i~~g~~~g--~glt~Dg~~l~vs-~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~ 168 (266)
T 2iwa_A 95 TLSNIKNFTHQMKDG--WGLATDGKILYGS-DGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NG-EVWANI 168 (266)
T ss_dssp TTEEEEEEECCSSSC--CEEEECSSSEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred CCcEEEEEECCCCCe--EEEEECCCEEEEE-CCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CC-EEEEec
Confidence 998888875331222 3344567745554 4678999999988664 4443321 1247788888 56 466666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-------------CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-------------HKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
..++.|.+.|..+... +..+.- -......++|+|+++.+++++...+.|.+.+
T Consensus 169 ~~~~~V~vID~~tg~V--------------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 169 WQTDCIARISAKDGTL--------------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp TTSSEEEEEETTTCCE--------------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CCCCeEEEEECCCCcE--------------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 6788999999987332 222211 1135689999999988899998889999988
Q ss_pred CCCc
Q 015484 389 MTDS 392 (406)
Q Consensus 389 ~~~~ 392 (406)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-05 Score=72.55 Aligned_cols=241 Identities=7% Similarity=-0.023 Sum_probs=147.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.-+|.+..+.. . |+.+. ...|+..++.... ...+........+++|.+.+..++++-...+.|..+++
T Consensus 78 ~~~C~~~~~~~-~-l~~~~-~~~I~~i~~~~~~---------~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 78 RRSCKALGPEP-V-LLFAN-RIDIRQVLPHRSE---------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp SSCEEECSSCC-E-EEEEC-BSCEEEECTTSCC---------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCeECCccccc-e-eEeec-CccceeeccCCCc---------EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 34455545532 3 33333 3458888876521 22233334557899999866635555566789999998
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
...... ............+++.+.++.++++-...+.|.+.++........+.........++++|.+..++++
T Consensus 146 ~g~~~~------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 146 NGSNVE------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp TSCCEE------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCCcE------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEe
Confidence 764311 11111223456788887677777777778889999887544322233333567899999987755655
Q ss_pred EeCC-CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe
Q 015484 277 ASSD-TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355 (406)
Q Consensus 277 ~~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (406)
-... +.|..+++..... .......-...+.|+|+|++..+.++-+..+.|..+|+..... ..+ .
T Consensus 220 d~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~--~ 284 (386)
T 3v65_B 220 DWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------KAV--I 284 (386)
T ss_dssp ECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------EEE--E
T ss_pred ccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------EEE--E
Confidence 5555 6888888875332 2223333456799999988777777777788899999864111 111 1
Q ss_pred cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 ~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.........+++. .+. ++++-...+.|..++..++
T Consensus 285 ~~~~~~P~giav~-~~~-ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 285 SQGLPHPFAITVF-EDS-LYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp CSSCSSEEEEEEE-TTE-EEEEETTTTEEEEEETTTC
T ss_pred ECCCCCceEEEEE-CCE-EEEeeCCCCeEEEEECCCC
Confidence 1223346677773 333 6667666777888874444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-07 Score=74.35 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=123.3
Q ss_pred CeEEEEEeecCCce--eEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCC
Q 015484 105 KVEIAQKIRVDGEV--NRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEG 180 (406)
Q Consensus 105 ~~~~~~~~~h~~~v--~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 180 (406)
..++++.++|...- ..+.|+ ++ .++.+.+.+| .|+++|+.+.+. ...+.-. .........+.+..
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv--------~~~~~l~-~~~FgeGit~~g~~ 98 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT--------LQQIELG-KRYFGEGISDWKDK 98 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE--------EEEEECC-TTCCEEEEEEETTE
T ss_pred ceEEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE--------EEEEecC-CccceeEEEEeCCE
Confidence 36788889998655 889998 55 6666766666 899999998533 3333322 23333222233553
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc--C
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH--E 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~ 258 (406)
+.+..-.++.+.++|..+.+.... +... ..-..++ +++..++++ ..++.|.++|..+.+.+..+... .
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~t------i~~~-~eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g 168 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRS------FNYD-GEGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHG 168 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEE------EECS-SCCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETT
T ss_pred EEEEEeeCCEEEEEECccCcEEEE------EECC-CCceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCC
Confidence 555555689999999988654322 2221 1123344 335555554 44788999999998887776432 1
Q ss_pred ---CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC------------CCCeEEEEEcCCCCCEEEEEe
Q 015484 259 ---KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH------------TEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 259 ---~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+... ....+.|+|+|+++.+++||-
T Consensus 169 ~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 169 EELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 334567776 565 666555678999999998764 3333321 235789999999887666663
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-05 Score=68.61 Aligned_cols=228 Identities=9% Similarity=0.015 Sum_probs=137.8
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
..|+..++.... ...+........+++|++.+..++++-...+.|..+++.......... ..+...-..
T Consensus 10 ~~I~~i~~~~~~---------~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~ 78 (316)
T 1ijq_A 10 HEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQA 78 (316)
T ss_dssp SSEEEEETTSCC---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSC
T ss_pred CeEEEEECCCcc---------eEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCC
Confidence 458888887632 122223345678999998766355565667899999987521000000 111112234
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCCcE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPLH 296 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~ 296 (406)
...+++.+.+++++++-...+.|.++++........+.........++++|.+..++++.... +.|..+++.... ..
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~ 156 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IY 156 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eE
Confidence 578888875677777777888999999875433222232335678999999777455554433 688888876422 22
Q ss_pred Ee-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 297 IL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 297 ~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
.+ ...-...+.|+++|++..+.++-+..+.|..+|+.... ...+............+++.. +. ++
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~------------~~~~~~~~~~~~~P~giav~~-~~-ly 222 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------RKTILEDEKRLAHPFSLAVFE-DK-VF 222 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEEECTTTTSSEEEEEEET-TE-EE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc------------eEEEeecCCccCCcEEEEEEC-CE-EE
Confidence 22 22345688999999887666676777899999986411 122222112223456777743 33 66
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
++-...+.|..++..++
T Consensus 223 ~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEeCCCC
Confidence 67666778888887554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-06 Score=71.32 Aligned_cols=192 Identities=8% Similarity=0.031 Sum_probs=124.6
Q ss_pred eEEEEEeecCCce--eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 106 VEIAQKIRVDGEV--NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 106 ~~~~~~~~h~~~v--~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.++++.+.|...- ..+.|+. ..+..+.+.+|.|+++|+.+.+. ...+....--.-.+++. +..+.+
T Consensus 43 ~~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv--------~~~~l~~~~FgeGit~~--g~~Ly~ 110 (268)
T 3nok_A 43 AHIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQP--------VWMERLGNIFAEGLASD--GERLYQ 110 (268)
T ss_dssp EEEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSC--------SEEEECTTCCEEEEEEC--SSCEEE
T ss_pred eEEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcE--------EeEECCCCcceeEEEEe--CCEEEE
Confidence 3677888887555 6888874 36788888899999999988432 33331111112235554 443566
Q ss_pred EecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-----
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE----- 258 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 258 (406)
..-.++.+.+||..+.+....+ .. ...-..+++. +. .|+.+..++.|.++|..+.+.+.++....
T Consensus 111 ltw~~~~v~V~D~~Tl~~~~ti------~~-~~eGwGLt~D--g~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 111 LTWTEGLLFTWSGMPPQRERTT------RY-SGEGWGLCYW--NG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp EESSSCEEEEEETTTTEEEEEE------EC-SSCCCCEEEE--TT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EEccCCEEEEEECCcCcEEEEE------eC-CCceeEEecC--CC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 6667899999999886543322 22 1222445543 44 44455568899999999988877763321
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------------CCCCeEEEEEcCCCCCEEEEEe
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------------HTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+.. -....+.|+|+|+++.+++||-
T Consensus 181 ~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 181 ELINELECA-NGV-IYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 245677777 565 666555677999999998764 333321 1236799999999888787773
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.6e-06 Score=68.66 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=123.3
Q ss_pred CCeEEEEEeecCCc--eeEEEEcCCCCcEEEEEeCC--CeEEEEeCCCccccccCCCCCceeeeCCCC-CeeEEEecCCC
Q 015484 104 PKVEIAQKIRVDGE--VNRARCMPQKPNLVGTKTSS--CEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-EGYGLSWSPFK 178 (406)
Q Consensus 104 ~~~~~~~~~~h~~~--v~~i~~~p~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~ 178 (406)
...++++.++|... ...+.|++ + .++.+.+.. +.|+++|+.++.. .....-... -.-+++.. +
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv--------~~~~~l~~~~fgeGi~~~--~ 74 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRI--------LQRAEVPPPYFGAGIVAW--R 74 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCE--------EEEEECCTTCCEEEEEEE--T
T ss_pred cceEEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCE--------EEEEeCCCCcceeEEEEe--C
Confidence 34788889999855 55899987 4 566666665 4899999998433 333322211 11234443 4
Q ss_pred CCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 179 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
..+....-.++.+.+||..+.+... .+... ..-..++ +++..++++ ..++.|.++|..+.+.+.++....
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~------ti~~~-~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRA------RFRYP-GEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEE------EEECS-SCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEE------EEeCC-CCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEcc
Confidence 4355556678999999998865432 22221 2223444 335566655 458899999999988877764321
Q ss_pred -----CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-------------CCCCeEEEEEcCCCCCEEEE
Q 015484 259 -----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-------------HTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 259 -----~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------------h~~~v~~i~~~p~~~~~l~s 320 (406)
..++.+.|. +|. +++..-.+..|.+.|.++++. +..+.. .....+.|+++|+++.+++|
T Consensus 145 ~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp TTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred CCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 345667766 455 555555677999999998764 333321 12357899999998877777
Q ss_pred Ee
Q 015484 321 SA 322 (406)
Q Consensus 321 ~~ 322 (406)
|-
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 63
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-06 Score=77.72 Aligned_cols=223 Identities=11% Similarity=0.016 Sum_probs=133.1
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.+.++...+++ . |..++.+ |..+|... .. ...+............. +. .|..++.++.|..+|.
T Consensus 61 ~~~~~~~~~~g-~-l~v~t~~--l~~~d~~g-~~--------~~~~~~~~~~~~~~~~~--~~-~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 61 IECRPSIGKDG-T-IYFGSDK--VYAINPDG-TE--------KWRFDTKKAIVSDFTIF--ED-ILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEECCEETTTT-E-ECCSSCE--EEEECCCG-GG--------GGGSCC-----CCEEEE--TT-EEEEECTTSEEEEECT
T ss_pred cccceEEecCC-c-EEEecCc--EEEECCCC-cE--------EEEEECCCCcccCceEE--CC-EEEEEecCCEEEEEcC
Confidence 34566666666 3 5555544 88888632 21 11111111112222333 33 6888888999999998
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
. +... .........+.++...+ ++. +..++.++.|..+|.. ++....+......+.++...+++. +..
T Consensus 125 ~-g~~~------~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v 192 (330)
T 3hxj_A 125 D-GTEK------WRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYF 192 (330)
T ss_dssp T-SCEE------EEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEE
T ss_pred C-CCEE------EEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEE
Confidence 7 4321 12222334455566654 444 4467788999999998 776655554556677778877776 444
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
++ +.|..+| .++.. +.........+.++...+++. |..++.++.+..+|... ..+....
T Consensus 193 ~t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~g---------------~~~~~~~ 251 (330)
T 3hxj_A 193 GS--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPDG---------------TEKWRFK 251 (330)
T ss_dssp ES--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTTS---------------CEEEEEE
T ss_pred Ee--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCCC---------------CEeEEee
Confidence 44 7899999 55443 444444556688888888874 66677788888887432 2222223
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.....+..+...+++. |..++.+|.|..++..
T Consensus 252 ~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 252 TGKRIESSPVIGNTDT--IYFGSYDGHLYAINPD 283 (330)
T ss_dssp CSSCCCSCCEECTTSC--EEEECTTCEEEEECTT
T ss_pred CCCCccccceEcCCCe--EEEecCCCCEEEECCC
Confidence 2333345566666675 5566778788888864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-06 Score=83.37 Aligned_cols=236 Identities=11% Similarity=0.102 Sum_probs=137.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-C----CCeeE-EEecCCCCCeEEEecC------CCeEEEEeC
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-D----KEGYG-LSWSPFKEGYLVSGSH------DNKICLWDV 196 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~iwd~ 196 (406)
..|++++.|+.|..+|..+++. ...+..+ . ..+.+ ... .+. .++.++. +|.|..+|.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~--------~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~ 197 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKE--------VWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDA 197 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCE--------EEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCCE--------EeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEEC
Confidence 3577788899999999987543 2333322 1 11111 111 133 5666553 799999999
Q ss_pred CCccCCceeeeeeee-----------------e---------ccCccEEEEEeeCCCCCEEEEEecCC------------
Q 015484 197 SALAQDKVIDAMHVY-----------------E---------AHESVVEDVSWHLKNENLFGSAGDDC------------ 238 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~-----------------~---------~~~~~i~~i~~~p~~~~~l~~~~~dg------------ 238 (406)
.+++....+...... . ........++++|. ..+++.++.++
T Consensus 198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~ 276 (677)
T 1kb0_A 198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKG 276 (677)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTC
T ss_pred CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCCCccC
Confidence 988654332211000 0 11112235678884 55666666553
Q ss_pred -------cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCCcEEecC
Q 015484 239 -------QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 239 -------~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.|..+|.++++.+..+.. +. .....+....+|+ ..++.++.+|.|+++|.++++. +.....
T Consensus 277 gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~ 355 (677)
T 1kb0_A 277 GDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNF 355 (677)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEES
T ss_pred CCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE-eccccc
Confidence 599999999988766532 21 1122223333552 3789999999999999998764 332221
Q ss_pred CC----------C-Ce------------------------EEEEEcCCCCCEEEEEeCC---------------------
Q 015484 301 HT----------E-EV------------------------FQVEWDPNHETVLASSADD--------------------- 324 (406)
Q Consensus 301 h~----------~-~v------------------------~~i~~~p~~~~~l~s~~~d--------------------- 324 (406)
.. + ++ ..++++|+.. ++++...+
T Consensus 356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~ 434 (677)
T 1kb0_A 356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKP 434 (677)
T ss_dssp SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTST
T ss_pred cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeeccccccccccccccc
Confidence 10 0 01 1468888876 45554332
Q ss_pred ----------------------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 325 ----------------------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 325 ----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
|.|..||+.+ .+.+..+. +..++....+...+. +++.++.||
T Consensus 435 ~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t--------------G~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg 498 (677)
T 1kb0_A 435 QSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA--------------QKAAWSVE-HVSPWNGGTLTTAGN-VVFQGTADG 498 (677)
T ss_dssp TGGGTCCCCEEECSSCCCSCCEEEEEEEETTT--------------TEEEEEEE-ESSSCCCCEEEETTT-EEEEECTTS
T ss_pred ccccccccccccccccCCCCCccEEEEEeCCC--------------CcEEeecC-CCCCCcCcceEeCCC-EEEEECCCC
Confidence 5677777765 23333332 223445555666666 677789999
Q ss_pred cEEEEeCCCccc
Q 015484 383 TVQVWQMTDSIY 394 (406)
Q Consensus 383 ~i~iw~~~~~~~ 394 (406)
.+++||..++..
T Consensus 499 ~l~a~D~~tG~~ 510 (677)
T 1kb0_A 499 RLVAYHAATGEK 510 (677)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCce
Confidence 999999998854
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00012 Score=65.58 Aligned_cols=205 Identities=5% Similarity=-0.043 Sum_probs=133.3
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....+..++|.+.+..++.+-...+.|+.++...... ...+........++++.+.+..+.++-...+.|.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~ 141 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 141 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc--------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEE
Confidence 33456889999987767777777788999999876311 1122222234568888876663666666678999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+.+++.... . ......-.....++++|.++.++++-... +.|..+++............-...+.|+++|.+.
T Consensus 142 ~~~~dG~~~-~-----~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 142 VANLDGAHR-K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp EEETTSCSC-E-----EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred EEcCCCCce-E-----EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence 999875321 1 11122234578999999777777776665 8899999875433222222334568999998777
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++++-...+.|..+|+..... ...+.........|++. .+ .++++-...+.|..++...
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccC
Confidence 5666666677899999875332 33333334567888884 33 4677777788888888544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00018 Score=65.79 Aligned_cols=230 Identities=7% Similarity=-0.002 Sum_probs=140.6
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++.... ...+......+.+|+|++.+..++++-...+.|..+++......... .........
T Consensus 91 ~~~I~~i~l~~~~---------~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~--~~~~~~~~~ 159 (400)
T 3p5b_L 91 RHEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQ 159 (400)
T ss_dssp TTEEEEECTTSCS---------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC--EEEECSSCS
T ss_pred cceeEEEccCCcc---------eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc--eEEEeCCCC
Confidence 4678888887631 22233445678899999876635555556788999988653210001 111222334
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 295 (406)
....+++.+.+++++++-...+.|.+.++........+.........|+++|.+..++.+-.. .+.|...++..... .
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-E
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-E
Confidence 677888887677888777788899999987654333333334557899999977745554423 36899998875332 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-...+.|+++|.+..+.++-+..+.|..+|+.... ...+....+.......++... ..++
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~------------~~~~~~~~~~l~~P~gl~v~~--~~ly 304 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------RKTILEDEKRLAHPFSLAVFE--DKVF 304 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------CEEEEECSSTTSSEEEEEEET--TEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc------------cEEEEeCCCCCCCCEEEEEeC--CEEE
Confidence 33333345789999999887666666677889999986421 122222112223455666632 2366
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
.+-...+.|..++..++
T Consensus 305 wtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEESSSCSEEEEESSSC
T ss_pred EecCCCCeEEEEEcCCC
Confidence 66666777888875554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-06 Score=82.09 Aligned_cols=155 Identities=10% Similarity=0.064 Sum_probs=88.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--CCCCeeEEEecC--CCCCeEEEec------CCCeEEEEeCCC
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSP--FKEGYLVSGS------HDNKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~--~~~~~l~s~~------~dg~i~iwd~~~ 198 (406)
..|++++.|+.|+.+|..+++. .-.+.. +......+..+| .+. .++.++ .+|.|..||..+
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~--------~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t 192 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQR--------AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAET 192 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCE--------EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred CEEEEEccCCEEEEEECCCCCE--------eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCC
Confidence 3577788899999999987543 222221 111111111111 133 455554 378999999998
Q ss_pred ccCCceeeeeee--e-----------------------eccCccEEEEEeeCCCCCEEEEEecCC---------------
Q 015484 199 LAQDKVIDAMHV--Y-----------------------EAHESVVEDVSWHLKNENLFGSAGDDC--------------- 238 (406)
Q Consensus 199 ~~~~~~~~~~~~--~-----------------------~~~~~~i~~i~~~p~~~~~l~~~~~dg--------------- 238 (406)
++....+..... . .........++++| ...+++.++.++
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 865433221000 0 00111123567887 456777777665
Q ss_pred ----cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 ----QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ----~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+..+.. |. ..........+|. ..++.++.+|.++++|.++++.
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 399999999998766532 21 1111112222332 2688899999999999998764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-06 Score=71.40 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=116.0
Q ss_pred eeEEEecCCCCCeEEEecCCC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
...+.|+ ++. ++.+.+.+| .|+++|+.+++....+. +. ....-..++.. ++.+++..-.++.+.+||..
T Consensus 45 tqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~----l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 45 TEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE----LG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE----CC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred cceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe----cC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence 4788998 454 777777766 89999999876433221 11 11112334444 56777777789999999999
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC--C---CCeEEEEEcCCCCCEEEEE
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH--T---EEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~i~~~p~~~~~l~s~ 321 (406)
+.+.+.++..... -..++ +++. .|+.+..++.|.++|..+.+. +..+... . ..++.+.|. +|+ +.+..
T Consensus 116 t~~~~~ti~~~~e-G~glt--~dg~-~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~ 188 (262)
T 3nol_A 116 NLRQVRSFNYDGE-GWGLT--HNDQ-YLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGE-IFANV 188 (262)
T ss_dssp TCCEEEEEECSSC-CCCEE--ECSS-CEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEE
T ss_pred cCcEEEEEECCCC-ceEEe--cCCC-EEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCE-EEEEE
Confidence 9999888864322 23344 4566 344444567899999988664 4443321 1 345678887 564 66666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
-.++.|.+.|..+....... ......+.... ...-....+.|+|+|+++.++++|
T Consensus 189 w~~~~I~vIDp~tG~V~~~I-d~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGII-DLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEE-ECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEE-ECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEEC
Confidence 67889999998874321111 00000000000 001123568899999988666665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-05 Score=68.72 Aligned_cols=204 Identities=5% Similarity=-0.043 Sum_probs=131.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
....+..++|.+.+..++.+-...+.|+.++...... ...+........++++.+.+..+.++-...+.|.+
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 3456889999987667777777788999999876311 11122222344678888766635666666788888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
.+++.... . ......-.....|+++|.++.++++-... +.|..+++............-...+.|+++|.+..
T Consensus 186 ~~~dg~~~-~-----~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 186 ANLDGAHR-K-----VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR 259 (386)
T ss_dssp CBTTSCSC-E-----EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred EeCCCCce-E-----EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCE
Confidence 88765321 1 11122234678999998667777666555 78999988754332222223345688999987775
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++++-+..+.|..+|+..... ...+.........|++. .+ .++++-...+.|..++...
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCC
Confidence 666666677899999875332 33333334567888883 33 4677777788898888544
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.7e-05 Score=63.06 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=125.7
Q ss_pred eeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEE
Q 015484 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241 (406)
Q Consensus 162 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 241 (406)
+.+-...+.+++|+|++..++++...++.|...|.. ++..+.+ .+.+ ......|++.+ ++.++++.-.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i----~l~g-~~D~EGIa~~~-~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI----PLDF-VKDLETIEYIG-DNQFVISDERDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE----ECSS-CSSEEEEEECS-TTEEEEEETTTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE----ecCC-CCChHHeEEeC-CCEEEEEECCCCcEE
Confidence 445556799999999876355557778889999987 4322111 1121 24577888886 555655555677888
Q ss_pred EEECCCCccc---ccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC--CCCCcEEec-------CCCC
Q 015484 242 IWDLRTNQTQ---QRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK--MTVPLHILS-------SHTE 303 (406)
Q Consensus 242 i~d~~~~~~~---~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~-------~h~~ 303 (406)
++++.....+ ... ...+.....++|+|.+..++++.-.+ ...+|.+.. ....+..+. .+..
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence 8887654421 111 12344568999999987455544444 444444431 111122221 1334
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CC------CCCeeeEEeCCCCCcEEE
Q 015484 304 EVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GH------KAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 304 ~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h------~~~v~~~~~s~~~~~~l~ 376 (406)
.+.+++++|....+++.+.....+.++|.... . .....+. +. -...-.|+|.++|. +++
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~-----------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyI 239 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--V-----------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYI 239 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E-----------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--E-----------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEE
Confidence 67899999998888888888899999997641 1 1122222 11 12567899999998 555
Q ss_pred EEeCCCcEEEEeC
Q 015484 377 SVADDNTVQVWQM 389 (406)
Q Consensus 377 s~~~dg~i~iw~~ 389 (406)
+ ++-+.++.+..
T Consensus 240 v-sE~n~~y~f~~ 251 (255)
T 3qqz_A 240 V-SEPNRFYRFTP 251 (255)
T ss_dssp E-ETTTEEEEEEC
T ss_pred E-cCCceEEEEEe
Confidence 5 67776666643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00012 Score=64.51 Aligned_cols=228 Identities=7% Similarity=0.019 Sum_probs=139.7
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++..... .....+. ....+.+++|.+.+..++.+-...+.|..+++........ .....-.
T Consensus 12 ~~~I~~i~l~~~~~------~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKE------NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----VVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTS------CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----EEEECCS
T ss_pred cCeEEEEECCCCce------EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----EEcCCCC
Confidence 45689999876321 1111121 2235679999986653555656678999999876532111 1111223
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 295 (406)
....+++.+.++.++++-...+.|.++++........+.........++++|.+..++.+-. ..+.|...++..... .
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence 46678888767778777777889999998754332222233455789999997663444432 257888888864322 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-...+.|+++|++..+..+-+..+.|..+|+..... ..+. .+.......+++..+ .++
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~~--~~~~~~P~glav~~~--~ly 222 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------------QAVV--KGSLPHPFALTLFED--ILY 222 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEE--CSCCSCEEEEEEETT--EEE
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------------EEEe--cCCCCCceEEEEeCC--EEE
Confidence 222233356789999998776677767788999999864111 1111 122334566776533 366
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 015484 376 SSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~~ 393 (406)
.+-...+.|..++..++.
T Consensus 223 wtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EEecCCCeEEEEECCCCC
Confidence 666667788888876553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-05 Score=67.80 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=119.9
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~ 248 (406)
..++.|+. +. +..+.+.+|.|+++|+.+++....+ +.. ...-..+++. ++.+++..-.++.+.+||..+.
T Consensus 57 tqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-----l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 57 TQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME-----RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE-----ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT
T ss_pred cceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE-----CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcC
Confidence 46888874 44 7888888999999999998654332 111 1112334544 5788878778999999999999
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CC---CCeEEEEEcCCCCCEEEEEeC
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS--HT---EEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~---~~v~~i~~~p~~~~~l~s~~~ 323 (406)
+.+.++..... -..++ +++. .|+.+..++.|.++|..+.+. +..+.. +. ..++.+.|. +|+ +.+..-.
T Consensus 127 ~~~~ti~~~~e-GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~ 199 (268)
T 3nok_A 127 QRERTTRYSGE-GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGV-IYANIWH 199 (268)
T ss_dssp EEEEEEECSSC-CCCEE--EETT-EEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE-EEEEETT
T ss_pred cEEEEEeCCCc-eeEEe--cCCC-EEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCE-EEEEECC
Confidence 99888864322 23444 4566 455555688999999988664 444432 11 246778887 564 6666657
Q ss_pred CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 324 DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
+..|.+.|..+....... ......+........-....+.|+|+|+++.+++||
T Consensus 200 s~~I~vIDp~TG~V~~~I-dl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVI-DASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSEEEEECTTTCBEEEEE-ECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCeEEEEeCCCCcEEEEE-ECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 889999998874321110 000000000000001124578899999888777776
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.3e-06 Score=79.63 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=121.7
Q ss_pred eEEEecCCCCCeEEEecCCC-------------------eEEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEe
Q 015484 170 YGLSWSPFKEGYLVSGSHDN-------------------KICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSW 223 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~ 223 (406)
..+++++++. .++.+..++ .|..+|..+++....++. ..|. ....-+..
T Consensus 246 ~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~p~l~~~ 320 (677)
T 1kb0_A 246 DSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE----TPGDNWDYTSTQPMILADI 320 (677)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES----STTCCSCCCCCSCCEEEEE
T ss_pred cceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec----CCCcccccccCCCcEEEec
Confidence 3577888777 777776654 599999988764332211 1111 11111222
Q ss_pred eCCCC---CEEEEEecCCcEEEEECCCCcccccccccC-----------CCe------------------------eEEE
Q 015484 224 HLKNE---NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-----------KEV------------------------NYLS 265 (406)
Q Consensus 224 ~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v------------------------~~i~ 265 (406)
.. ++ ..++.++.+|.++++|.++++.+..+.... .++ ..++
T Consensus 321 ~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a 399 (677)
T 1kb0_A 321 KI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS 399 (677)
T ss_dssp EE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred cc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence 22 33 678889999999999999998765442110 001 1567
Q ss_pred ecCCCCcEEEEEeC-------------------------------------------CCcEEEEeCCCCCCCcEEecCCC
Q 015484 266 FNPYNEWVLATASS-------------------------------------------DTTVALFDMRKMTVPLHILSSHT 302 (406)
Q Consensus 266 ~~~~~~~~l~~~~~-------------------------------------------dg~i~vwd~~~~~~~~~~~~~h~ 302 (406)
++|++. ++++... .|.|..||+.+++. +-... +.
T Consensus 400 ~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~~ 476 (677)
T 1kb0_A 400 FNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-HV 476 (677)
T ss_dssp EETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-ES
T ss_pred EcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-CC
Confidence 888887 5655432 26799999988764 33332 23
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCCCCeeeEEeCCCCCcEEEEEeC-
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHKAKISDFSWNKNDPWVISSVAD- 380 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~s~~~- 380 (406)
.++....+...+. +++.++.||.+++||..+. +.+..+. ++.....-+.|..+|+.+++..+.
T Consensus 477 ~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG--------------~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~ 541 (677)
T 1kb0_A 477 SPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG--------------EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGW 541 (677)
T ss_dssp SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC--------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CCCcCcceEeCCC-EEEEECCCCcEEEEECCCC--------------ceeeeeeCCCCcccCCEEEEeCCEEEEEEeccC
Confidence 3344445555665 5778899999999999873 3344433 222233445666777644444322
Q ss_pred ---------------CCcEEEEeCCCccc
Q 015484 381 ---------------DNTVQVWQMTDSIY 394 (406)
Q Consensus 381 ---------------dg~i~iw~~~~~~~ 394 (406)
.+.+..|.+.....
T Consensus 542 ~~~~~~~~~~~~~~~~~~l~~f~l~~~a~ 570 (677)
T 1kb0_A 542 GGVYGLAARATERQGPGTVYTFVVGGKAR 570 (677)
T ss_dssp CHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred CccccccccccccCCCCeEEEEecccccc
Confidence 46788888875443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00021 Score=60.41 Aligned_cols=204 Identities=8% Similarity=0.133 Sum_probs=126.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+-.+.+..++|.|++..++++...++.|...|... .. ...+. +-....-+|++.+++. ++++.-.++.+
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-~v--------~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l 93 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-DL--------IRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAI 93 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-CE--------EEEEECSSCSSEEEEEECSTTE-EEEEETTTTEE
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-CE--------EEEEecCCCCChHHeEEeCCCE-EEEEECCCCcE
Confidence 34568999999998767777788888899888873 11 22221 1124567889987776 66666667889
Q ss_pred EEEeCCCccCCceeeeeee-e--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC---Ccccccc-------cccC
Q 015484 192 CLWDVSALAQDKVIDAMHV-Y--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT---NQTQQRV-------KAHE 258 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~-~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~-------~~~~ 258 (406)
.++++.............. + .........++|+|.++.+++ +.......+|..+. ...+..+ ....
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 9998876542111111110 0 123455789999996555555 44443444444431 1111111 1123
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC---------CCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT---------EEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
..+.+++++|....+++.....+.|..+|.... ++..+.-.. ...-.|+|.++|. +. ..++-+.+++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-ly-IvsE~n~~y~ 248 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IY-IVSEPNRFYR 248 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EE-EEETTTEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EE-EEcCCceEEE
Confidence 467899999988767777777889999997743 243333221 3678999999996 44 4466666665
Q ss_pred Ee
Q 015484 330 WD 331 (406)
Q Consensus 330 wd 331 (406)
+.
T Consensus 249 f~ 250 (255)
T 3qqz_A 249 FT 250 (255)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-06 Score=78.23 Aligned_cols=202 Identities=11% Similarity=0.089 Sum_probs=128.6
Q ss_pred CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe-e-CCCCCEEEEEe------------------c
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW-H-LKNENLFGSAG------------------D 236 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~-p~~~~~l~~~~------------------~ 236 (406)
+|+..+++...++.|.+.|+.+.+..+.+ .+. ....+..+++ . | ++.++++++ .
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii----~ip-~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAIL----EIP-NAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE----ECS-SCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEE----eCC-CCCCCcceeeeecC-CCcEEEEecccccccCCCCccccccccc
Confidence 66634555555778999999986543222 111 2245677777 4 7 455555553 3
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC-----------------------------------
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT----------------------------------- 281 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg----------------------------------- 281 (406)
++.+.+.|..+.+...++.... ....++++|+|. ++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 5679999999988777765323 345678999998 444444332
Q ss_pred ---cEEEEeCCC--CCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 282 ---TVALFDMRK--MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 282 ---~i~vwd~~~--~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
.|.+.|.++ ....+..+.. .....++.++|+|+++++++..+.+|.++|+.+....... .. +..........
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~-~l-~~~~~v~~~v~ 328 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NA-DPRSAVVAEPE 328 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-CGGGGEEECCB
T ss_pred EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc-cc-CcccceEEEcC
Confidence 477777776 3321333332 2356789999999988888888999999999863210000 00 00011222222
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
-......++|+|+| +..++.-.|+.|.+|++..
T Consensus 329 -vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred -CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 23457889999999 5788888999999999977
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=65.64 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=118.5
Q ss_pred CCCC--CeeEEEecCCCCCeEEEecCCC--eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc
Q 015484 164 GHDK--EGYGLSWSPFKEGYLVSGSHDN--KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ 239 (406)
Q Consensus 164 ~h~~--~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 239 (406)
.|.. -...+.|++ +. ++.+.+.+| .|+.+|+.+++....+. +.. ...-..++.. ++++++..-.++.
T Consensus 16 phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~----l~~-~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQRAE----VPP-PYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp ECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEEEE----CCT-TCCEEEEEEE--TTEEEEEESSSSE
T ss_pred CCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEEEe----CCC-CcceeEEEEe--CCEEEEEEeeCCE
Confidence 4553 355899986 44 666666654 89999999875432221 111 1111334444 5777777778999
Q ss_pred EEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-----CCeEEEEEcCCC
Q 015484 240 LMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-----EEVFQVEWDPNH 314 (406)
Q Consensus 240 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~i~~~p~~ 314 (406)
+.+||..+.+.+.++..... -..++ +++..++++ ..++.|.++|..+.+. +..+.... ..++.+.|. ++
T Consensus 87 v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CC
Confidence 99999999999888864332 24455 445534554 4578999999998664 44443311 356777776 45
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEE
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSV 378 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~ 378 (406)
+ +.+..-.+..|.+.|..+....... ......+.............+.|+++|++..++++|
T Consensus 161 ~-lyanvw~s~~I~vIDp~tG~V~~~i-dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 161 E-LLANVWLTSRIARIDPASGKVVAWI-DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp E-EEEEETTTTEEEEECTTTCBEEEEE-ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred E-EEEEECCCCeEEEEECCCCCEEEEE-ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 3 5666656789999999874321111 000000000000001223578899999888677765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00031 Score=70.41 Aligned_cols=253 Identities=8% Similarity=0.027 Sum_probs=148.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.++...+++. |..|+.+| |.+|+.......... ..+.....-....|.++...++|. |..|+.++-|..|+
T Consensus 263 ~~i~~i~~d~~g~--lWigt~~G-l~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 263 NYIRSLAMDSQNR--LWIGTFND-LNIYHEGTDSFASYS-SNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYH 336 (795)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEEETTTTEEEEEC-CCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEEC
T ss_pred CeEEEEEEcCCCC--EEEEeCCh-hheEcCCCCeEEEEe-cCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeC
Confidence 5689998888874 44455555 888887653211000 000000011235689998887765 67777778899998
Q ss_pred CCCccCCceeeeeee-eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc--------ccCCCeeEEEe
Q 015484 196 VSALAQDKVIDAMHV-YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK--------AHEKEVNYLSF 266 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~i~~ 266 (406)
....... .+..... ..-....|.++...+ ++.+. .|+.++.|..||..++....... .....|.++..
T Consensus 337 ~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 337 PIRNRFK-NIRNIPYKNSLSDNVVSCIVEDK-DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp GGGGSSE-EECCCTTSSSCSCSSEEEEEECT-TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCcccce-EEcCCCCCCCCCCCeeEEEEECC-CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 7654221 1100000 001234688888876 45544 57777789999987665422211 12356889988
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILS-----SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
.+++. +|..|+.++-|..||..+.. ...+. .+...|.++...+++. |..|+. +-+.+||.....-. ..
T Consensus 414 d~~g~-~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~-~~ 486 (795)
T 4a2l_A 414 DEKKS-LVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFT-TI 486 (795)
T ss_dssp ETTTT-EEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEE-EC
T ss_pred cCCCC-EEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEE-Ec
Confidence 88776 57778887789999987643 33332 2345799999998886 344444 45888887652110 00
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.....+. .-....|.++...++|. +.+.+ . +.|..|+..++.+
T Consensus 487 -~~~~~~~------~~~~~~i~~i~~d~~g~-lWigt-~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 487 -EKEKDGT------PVVSKQITTLFRDSHKR-LWIGG-E-EGLSVFKQEGLDI 529 (795)
T ss_dssp -CBCTTCC------BCCCCCEEEEEECTTCC-EEEEE-S-SCEEEEEEETTEE
T ss_pred -ccccccc------ccCCceEEEEEECCCCC-EEEEe-C-CceEEEeCCCCeE
Confidence 0000000 01235688999999998 45444 3 4588888766543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00021 Score=70.96 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=109.1
Q ss_pred ceeEEEEc-CCCCcEEEEEeCCC----eEEEEeCCCc-cccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC--
Q 015484 117 EVNRARCM-PQKPNLVGTKTSSC----EVYVFDCAKQ-AEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-- 188 (406)
Q Consensus 117 ~v~~i~~~-p~~~~~l~~~~~dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 188 (406)
.+...+|+ |+|..++.+...+| +|+++|+.++ ... + ..+.. ...+++|+|+++ .|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~-~~~~~---~~~~~~WspDg~-~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------A-DKVSG---TNGEIVWGPDHT-SLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------C-CCEEE---ECSCCEECSSTT-EEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------C-ccccC---ceeeEEEecCCC-EEEEEEECCC
Confidence 67889999 99954443443333 5999999874 210 0 11111 134789999998 55555544
Q ss_pred ---CeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEe---cCCcEEEEECCCCcc-c--ccc-ccc
Q 015484 189 ---NKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAG---DDCQLMIWDLRTNQT-Q--QRV-KAH 257 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~-~--~~~-~~~ 257 (406)
..|.++++.++..... ..+. ........+.|+|+ ++.|+... ....|.++|+.++.. . ..+ ...
T Consensus 244 ~~~~~v~~~~lgt~~~~~~----lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDV----CLYEEHNPLFSAFMYKAAD-TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp CCEEEEEEEETTSCGGGCE----EEEECCCTTCEEEEEECTT-SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred CCCCEEEEEECCCCchhcE----EEEecCCCceEEEEEECCC-CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence 3577888876532111 1111 12234567899995 55554433 234688889887531 2 223 333
Q ss_pred CCCeeEEEecCCCCcEEEEEeCC--C--cEEEEeCCCCCCCcEE-ecCCCC--CeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 258 EKEVNYLSFNPYNEWVLATASSD--T--TVALFDMRKMTVPLHI-LSSHTE--EVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~d--g--~i~vwd~~~~~~~~~~-~~~h~~--~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.....++.|+. +..+++....+ + .|..+|+.+... ... +..+.. .+..+.+. ++.++++...++..+||
T Consensus 319 ~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 319 KGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred CCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 45556666654 44355555544 2 577777764222 222 333333 34555554 55678888888875554
Q ss_pred e
Q 015484 331 D 331 (406)
Q Consensus 331 d 331 (406)
-
T Consensus 395 ~ 395 (751)
T 2xe4_A 395 T 395 (751)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00014 Score=65.87 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH 209 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 209 (406)
.+.+++.++.|..+|..++.. ................. +. .++.++.++.|..+|..+++.........
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~--------~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTV--------AWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCE--------EEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEcCCCEEEEEECCCCCE--------EEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 577788899999999987432 22222221111111222 34 78888899999999998875432221100
Q ss_pred eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCC----eeE---EEecC--CCCcEEEEEeCC
Q 015484 210 VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE----VNY---LSFNP--YNEWVLATASSD 280 (406)
Q Consensus 210 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~---i~~~~--~~~~~l~~~~~d 280 (406)
.... .......... +..++.++.++.|..+|.++++.+......... +.. +...| .+. .+..++.+
T Consensus 174 ~~~~-~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~ 248 (376)
T 3q7m_A 174 PSLS-LRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYN 248 (376)
T ss_dssp ------CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEEECTT
T ss_pred Ccee-ecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEEEecC
Confidence 0000 0000112222 345667888999999999998876554321100 000 10111 134 67778889
Q ss_pred CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CCC
Q 015484 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GHK 359 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 359 (406)
+.+..+|.++++. +.... ......+... +. .+..++.++.|..+|..+.. .+.... ...
T Consensus 249 g~l~~~d~~tG~~-~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~--------------~~w~~~~~~~ 308 (376)
T 3q7m_A 249 GNLTALDLRSGQI-MWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGV--------------TLWTQSDLLH 308 (376)
T ss_dssp SCEEEEETTTCCE-EEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCC--------------EEEEECTTTT
T ss_pred cEEEEEECCCCcE-Eeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCc--------------EEEeecccCC
Confidence 9999999988764 33332 2334455443 33 47778889999999988733 222222 111
Q ss_pred CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 360 ~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..+...... +. .|+.++.+|.|.++|..++..
T Consensus 309 ~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 309 RLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp SCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE
T ss_pred CcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcE
Confidence 122222332 23 467778899999999988764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00065 Score=59.84 Aligned_cols=210 Identities=8% Similarity=-0.018 Sum_probs=130.0
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+..-..+..++|.+.+..++.+-...+.|+.+++...... ......+...-....++++.+.+.++.++-...+.|
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEE
Confidence 3445678899999977677777777889999998751100 001111222223457888886565355666678899
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccc-cccCCCeeEEEecCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPY 269 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~ 269 (406)
.+.++..... . ............++++|.++.++++.... +.|...++... ....+ ...-...+.++++|+
T Consensus 102 ~~~~~~g~~~----~--~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~ 174 (316)
T 1ijq_A 102 SVADTKGVKR----K--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL 174 (316)
T ss_dssp EEEETTSSSE----E--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT
T ss_pred EEEeCCCCce----E--EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEecc
Confidence 9999865321 1 11122234678999998667666665443 78888887643 22222 223345789999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
+..++++-+..+.|..+|+..... ..... ..-.....+++.. + .++++-...+.|..++..+.
T Consensus 175 ~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 175 SGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCC
Confidence 775666666677999999875332 22222 1234567888853 3 56777777889999987543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-05 Score=75.80 Aligned_cols=184 Identities=9% Similarity=0.076 Sum_probs=109.7
Q ss_pred EEEecCCCCCeEEEecCCCe-------------------EEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEee
Q 015484 171 GLSWSPFKEGYLVSGSHDNK-------------------ICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSWH 224 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~ 224 (406)
.+++++.+. +++.+..++. |..+|..+++....++. ..|. .++......
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~~~l~d~~ 313 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT----TPGDAWDYTATQHMILAELP 313 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES----STTCCSCCCCCSCEEEEEEE
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec----CCcccccccCCCCcEEEeec
Confidence 577888776 8888887764 99999998865332211 1111 111111111
Q ss_pred CCCC---CEEEEEecCCcEEEEECCCCcccccccccC---------------------------------------CCee
Q 015484 225 LKNE---NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE---------------------------------------KEVN 262 (406)
Q Consensus 225 p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------~~v~ 262 (406)
. ++ ..++.++.+|.++++|.++++.+....... ..-.
T Consensus 314 ~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 392 (689)
T 1yiq_A 314 I-DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ 392 (689)
T ss_dssp E-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred c-CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence 1 23 368888999999999999998763221000 0012
Q ss_pred EEEecCCCCcEEEEEeC---------------------------------------------CCcEEEEeCCCCCCCcEE
Q 015484 263 YLSFNPYNEWVLATASS---------------------------------------------DTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 263 ~i~~~~~~~~~l~~~~~---------------------------------------------dg~i~vwd~~~~~~~~~~ 297 (406)
.++++|+.. ++++... +|.|..||+.+++. +-.
T Consensus 393 ~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~ 470 (689)
T 1yiq_A 393 PMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-AWE 470 (689)
T ss_dssp CCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-EEE
T ss_pred cceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-EeE
Confidence 367888877 5555422 36799999998764 333
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC-CCCeeeEEeCCCCCcEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH-KAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~~l~ 376 (406)
...+ .++..-.+...+. +++.++.||.++.||.++. +.+..+... .....-+.|..+|+.+++
T Consensus 471 ~~~~-~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG--------------~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 471 VPYV-TIFNGGTLSTAGN-LVFEGSADGRVIAYAADTG--------------EKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC--------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ccCC-CCccCccceECCC-EEEEECCCCcEEEEECCCC--------------ccceeeeCCCCcccCceEEEECCEEEEE
Confidence 3332 2233334444554 7888999999999999883 444444322 222344667778874444
Q ss_pred EE
Q 015484 377 SV 378 (406)
Q Consensus 377 s~ 378 (406)
..
T Consensus 535 ~~ 536 (689)
T 1yiq_A 535 FM 536 (689)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=72.62 Aligned_cols=192 Identities=8% Similarity=-0.043 Sum_probs=115.0
Q ss_pred ceeEEEEcCCCCcEEEEEeC--CCeEEE--EeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 117 EVNRARCMPQKPNLVGTKTS--SCEVYV--FDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
....++++|+++. ++++.. +..|.+ +|..+ ...+... + ++...|++...+++.+.||.+.
T Consensus 125 ~P~~ia~SpDGk~-lyVan~~~~~~v~V~~iD~~t-----------v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~ 188 (368)
T 1mda_H 125 RVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASD-----------DQLTKSA-S---CFHIHPGAAATHYLGSCPASLA 188 (368)
T ss_dssp CTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEE-----------EEEEECS-S---CCCCEEEETTEEECCCCTTSCE
T ss_pred CcceEEEcCCCCE-EEEEccCCCCeEEEEEEchhh-----------ceEEECC-C---ceEEccCCCeEEEEEcCCCCEE
Confidence 4678999999965 444443 467888 88865 1122211 1 1223455655677777889988
Q ss_pred EEeCCC-----ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc--ccccccc---------
Q 015484 193 LWDVSA-----LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ--TQQRVKA--------- 256 (406)
Q Consensus 193 iwd~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~--------- 256 (406)
+.++.+ ++...... ..+.....+. . .+.++.++ ..+. +.+.+.|+.... .+..+..
T Consensus 189 ~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 189 ASDLAAAPAAAGIVGAQCT--GAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp EEECCSSCCCCEECCCCSC--TTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred EEECccccccCCeEEEEee--eeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 888876 22110000 0011112333 3 55344444 4455 899999986532 1222210
Q ss_pred -cCCCeeEEEecCCCCcEEEEEe---C-----CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCc
Q 015484 257 -HEKEVNYLSFNPYNEWVLATAS---S-----DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA-DDRR 326 (406)
Q Consensus 257 -~~~~v~~i~~~~~~~~~l~~~~---~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~-~dg~ 326 (406)
.......++++|++..++++.. . ++.+.++|+.+.+. +..+... ....+|+|+|+++.++++.. .++.
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-CCcceEEECCCCCEEEEEccCCCCe
Confidence 0111223689999985554433 2 23566999998664 5555432 25889999999987888888 6999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.++|+.+
T Consensus 339 VsVID~~t 346 (368)
T 1mda_H 339 LDIYDAAS 346 (368)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 99999987
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00017 Score=65.31 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=124.7
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC---------CCCee-EEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH---------DKEGY-GLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h---------~~~v~-~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
.+.+++.++.|..+|..++.. ....... ...+. .+.. .+. .++.++.++.|..+|..++
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~--------~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKE--------IWSVSLAEKDGWFSKEPALLSGGVTV--SGG-HVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCE--------EEEEECCC---CCSCCCCCEEEEEEE--ETT-EEEEEETTSEEEEEETTTC
T ss_pred EEEEEcCCCeEEEEEccCCce--------eeeecCccccccccccCcccccCceE--eCC-EEEEEcCCCEEEEEECCCC
Confidence 566777788999999877433 2122211 12222 2222 244 7888889999999999887
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCe-----eEEEecCCCCcEE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEV-----NYLSFNPYNEWVL 274 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~l 274 (406)
+..... ............. +..++.++.++.|..+|.++++.+.......... ...... +. .+
T Consensus 124 ~~~W~~------~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v 191 (376)
T 3q7m_A 124 TVAWQT------KVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG-AA 191 (376)
T ss_dssp CEEEEE------ECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT-EE
T ss_pred CEEEEE------eCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC-EE
Confidence 543221 1111111112222 3466678889999999999998766553322111 112222 33 67
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCC-------CeEEEEEcC--CCCCEEEEEeCCCcEEEEeCCCCCccccccccc
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTE-------EVFQVEWDP--NHETVLASSADDRRLMVWDLNRIGDEQLELDAE 345 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-------~v~~i~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (406)
++++.++.|..+|..+++. +........ .+..+.-.| .+. .+..++.++.+..+|..+..
T Consensus 192 ~~g~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~g~l~~~d~~tG~--------- 260 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYNGNLTALDLRSGQ--------- 260 (376)
T ss_dssp EECCTTTEEEEEETTTCCE-EEEEECCC-----------CCCCCCEEETT-EEEEECTTSCEEEEETTTCC---------
T ss_pred EEEcCCCEEEEEECCCCcE-EEEEecccCCCCcccccccccCCCcEEECC-EEEEEecCcEEEEEECCCCc---------
Confidence 7788899999999988664 322221110 000010111 123 47778889999999987632
Q ss_pred CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 346 DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 346 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+.... ......+... +. .+..++.++.|..+|..++..
T Consensus 261 -----~~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 261 -----IMWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp -----EEEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCE
T ss_pred -----EEeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcE
Confidence 222221 1123333333 33 466667788999999988754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-05 Score=77.17 Aligned_cols=249 Identities=9% Similarity=-0.006 Sum_probs=132.1
Q ss_pred eEEEEcC-CCCcEEEEEeCCC-----------eEEEEeCCCccccccCCCCCceeeeC-CCCCeeEEEecCCCCCeEEEe
Q 015484 119 NRARCMP-QKPNLVGTKTSSC-----------EVYVFDCAKQAEKQQDDCDPDLRLKG-HDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 119 ~~i~~~p-~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~ 185 (406)
..+++.| ++ .+++.|+.++ .+.+||..+. .+.....+.. +.....++++..++. +++.|
T Consensus 189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~------~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~G 260 (656)
T 1k3i_A 189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG------IVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTG 260 (656)
T ss_dssp SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC------CBCCCEEEECSCCCSSCEEEECTTSC-EEEEC
T ss_pred eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC------cEEeCcccCCCCCCccccccCCCCCC-EEEeC
Confidence 4667777 55 6777776542 5889998874 3444444432 333444677777787 88888
Q ss_pred cC-CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cC-----CcEEEEECCCCcccccc----
Q 015484 186 SH-DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DD-----CQLMIWDLRTNQTQQRV---- 254 (406)
Q Consensus 186 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~---- 254 (406)
+. ++.+.+||..+.. +..+....... .-.+++..+ ++++++.|+ .+ ..+.+||..+.+....-
T Consensus 261 G~~~~~v~~yd~~t~~----W~~~~~~~~~R-~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSDS----WIPGPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp SSSTTCEEEEEGGGTE----EEECCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred CCCCCceEEecCcCCc----eeECCCCCccc-cccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 74 5689999987643 21111111111 112334444 678888888 34 46899999876532210
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCC---------cEEEEeCCCCCCCcEEecCC---------CCCeEEEEEcCCCCC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDT---------TVALFDMRKMTVPLHILSSH---------TEEVFQVEWDPNHET 316 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg---------~i~vwd~~~~~~~~~~~~~h---------~~~v~~i~~~p~~~~ 316 (406)
......-....+..++. +++.|+.+| .+..||...... ......+ ...-.++.|...+..
T Consensus 335 ~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~ 412 (656)
T 1k3i_A 335 NPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 412 (656)
T ss_dssp GGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTE
T ss_pred cccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCe
Confidence 00000000011223344 445554443 467888876431 1111111 112345555543445
Q ss_pred EEEEEeCCC-----------cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC-eeeEEeCCCCCcEEEEEeCC---
Q 015484 317 VLASSADDR-----------RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK-ISDFSWNKNDPWVISSVADD--- 381 (406)
Q Consensus 317 ~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~~l~s~~~d--- 381 (406)
+++.|+.++ .|.+||.....-. .+..-..+... -.++...|+++ +++.||.+
T Consensus 413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~------------~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~ 479 (656)
T 1k3i_A 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT------------VFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGI 479 (656)
T ss_dssp EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE------------EECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCC
T ss_pred EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee------------EEccCCCCCCcccCCeEECCCCC-EEEECCcccCc
Confidence 777877542 5667776542110 00000111112 23445667888 78888754
Q ss_pred --------CcEEEEeCCCcccCC
Q 015484 382 --------NTVQVWQMTDSIYRD 396 (406)
Q Consensus 382 --------g~i~iw~~~~~~~~~ 396 (406)
..+.+||+.++.+..
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CcCCCCcccceEEEcCCCCceee
Confidence 468999998776543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00051 Score=68.12 Aligned_cols=230 Identities=7% Similarity=0.004 Sum_probs=134.8
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCc
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHES 216 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (406)
...|+..++.... ...+......+.+|+|.+.+..++++-...+.|+.+++......... ...+.....
T Consensus 403 ~~~Ir~i~l~~~~---------~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~--~~vi~~~l~ 471 (791)
T 3m0c_C 403 RHEVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQ 471 (791)
T ss_dssp BSSEEEECTTSCC---------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSCS
T ss_pred ccceeEeeccCCc---------ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce--eEEEecCCC
Confidence 3457777776521 22333445667899999866535556666788999988753210011 111222334
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCCc
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVPL 295 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~ 295 (406)
....|++.+.+++++++-...+.|.+.++........+.........|+++|.+..++++-... +.|...++..... .
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~ 550 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y 550 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-E
Confidence 5677888876778888888889999999875443333333345578999999866455544333 6788888875332 2
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
..+...-...+.|++++.+..|+++-...+.|...++..... ..+....+.......|++..+ +++
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~------------~~v~~~~~~l~~P~glav~~~--~lY 616 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVFED--KVF 616 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEECTTTTSSEEEEEEETT--EEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce------------EEEecCCCccCCCCEEEEeCC--EEE
Confidence 233333457899999988776666666677899998865221 112111112223445555332 355
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
++-...+.|...+..++
T Consensus 617 wtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 617 WTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEeCCCC
Confidence 55555566666664444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00074 Score=67.67 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=147.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..|.++...+++. |-.|+.++-|..|+.......... ..+. .-.-....|.++...++|. |..|+.++-|..|+
T Consensus 310 ~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~-~~~~-~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 310 RSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIR-NIPY-KNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYN 383 (795)
T ss_dssp SCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEEC-CCTT-SSSCSCSSEEEEEECTTSC--EEEEESSSCEEEEC
T ss_pred CcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEc-CCCC-CCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEc
Confidence 5688898888873 556777666888886653211000 0000 0001235688998877665 66788887899999
Q ss_pred CCCccCCceeeeee-ee--eccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc----ccCCCeeEEEecC
Q 015484 196 VSALAQDKVIDAMH-VY--EAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----AHEKEVNYLSFNP 268 (406)
Q Consensus 196 ~~~~~~~~~~~~~~-~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~i~~~~ 268 (406)
..++.... +.... .. .-....|.++...+ ++.+|..|+.++.|.++|.++++...... .....|.++...+
T Consensus 384 ~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 384 PITQRFTS-YTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG 461 (795)
T ss_dssp TTTCCEEE-ECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS
T ss_pred CCCCcEEE-EecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC
Confidence 87643211 10000 00 01235688888876 56634567777779999988765422111 2345789999988
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHILS-------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
++. |..|+.+ .|.+||..+.. ...+. .....|.++...+++. |..|+. +-+..||...... .
T Consensus 462 ~g~--lwigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl~~~~~~~~~~--~- 530 (795)
T 4a2l_A 462 EGN--LWLGTLS-ALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKR--LWIGGE-EGLSVFKQEGLDI--Q- 530 (795)
T ss_dssp SSC--EEEEESS-CEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCC--EEEEES-SCEEEEEEETTEE--E-
T ss_pred CCC--EEEEecC-ceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCC--EEEEeC-CceEEEeCCCCeE--E-
Confidence 887 4444554 58899987542 22221 1236799999999886 334444 4588888754110 0
Q ss_pred ccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
...... ........|.++...++|. +.+++. . -|..|+..++.+.
T Consensus 531 ~~~~~~------~~~l~~~~i~~i~~d~~g~-lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 531 KASILP------VSNVTKLFTNCIYEASNGI-IWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp ECCCSC------SCGGGGSCEEEEEECTTSC-EEEEES-S-CEEEEETTTTEEE
T ss_pred EecCCC------CCCCCCCeeEEEEECCCCC-EEEEeC-C-CceeECCCCCcEE
Confidence 000000 0011345688999999998 454433 3 5788888776543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00091 Score=58.90 Aligned_cols=205 Identities=6% Similarity=-0.038 Sum_probs=130.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..+.|.+.+..++.+-...+.|+.++..... .....+...-....++++.+.+..+.++-...+.|.+++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~-------~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~ 107 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-------SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN 107 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-------CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-------ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEE
Confidence 3577899999765777777778899999987631 111222222234567888875653666666778999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++.... . ............+++.|.++.++.+-. ..+.|...++............-...+.|+++|++..++
T Consensus 108 ~dG~~~-~-----~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 108 LDGSLR-K-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp TTSCSC-E-----EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCCCcE-E-----EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEE
Confidence 875321 1 111123345789999986666665542 357888888764332222222234568899999777566
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCC
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 336 (406)
++-+..+.|..+|+..... .............+++..+ .++.+-...+.|..++..+..
T Consensus 182 ~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 182 WADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCC
Confidence 6666677999999875332 2223334456778888633 467777778899999986543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00015 Score=64.07 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=121.8
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee--------------eccCccEEEEEeeCCCCCEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY--------------EAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~~~~i~~i~~~p~~~~~l~ 232 (406)
....+++|.+++. ++.++..++.|..|+...+.. ..+.....+ ......+..+++.+.++++++
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3456889999876 788888899999998765321 111000000 001134788999863455554
Q ss_pred EEecCCcEEEEECCCCccccccc-----ccCCCeeEEEecC-CCCcEEEEEeC-----------------CCcEEEEeCC
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRVK-----AHEKEVNYLSFNP-YNEWVLATASS-----------------DTTVALFDMR 289 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~i~~~~-~~~~~l~~~~~-----------------dg~i~vwd~~ 289 (406)
+...+.|..+|..++.. ..+. ......+.+++.+ +|. ++++... ++.|..||..
T Consensus 97 -~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp -EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred -EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 44445588888775532 1221 1123467899999 887 5554322 3678888876
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
+.. +..+...-...+.|+|+|+++.++++-...+.|.+|++..... +........ .. ...+++++
T Consensus 174 ~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~---~g-P~gi~~d~ 238 (322)
T 2fp8_A 174 TKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI---PN-PGNIKRNA 238 (322)
T ss_dssp TTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC---SS-EEEEEECT
T ss_pred CCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC---CC-CCCeEECC
Confidence 543 2222111234567999999975566666778999999874210 011222221 22 77899999
Q ss_pred CCCcEEEEEeC----------CCcEEEEeCCCc
Q 015484 370 NDPWVISSVAD----------DNTVQVWQMTDS 392 (406)
Q Consensus 370 ~~~~~l~s~~~----------dg~i~iw~~~~~ 392 (406)
+|. +.++... .+.|..++....
T Consensus 239 ~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~ 270 (322)
T 2fp8_A 239 DGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN 270 (322)
T ss_dssp TSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC
T ss_pred CCC-EEEEecCcccccccCCCccEEEEECCCCC
Confidence 998 5555543 356777776544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0014 Score=59.79 Aligned_cols=211 Identities=9% Similarity=-0.012 Sum_probs=131.6
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+.....+..++|.+.+..++.+-...+.|+.+++..... .......+........++++.+.+.++.++-...+.|
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~----~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC----CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeE
Confidence 345567889999987667777777788899998865210 0111222222334567888887555366666677899
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-CCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD-DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.+.+++..... ..+...-.....|+++|.++.++.+-.. .+.|...++............-...+.|++++.+
T Consensus 184 ~~~~~~g~~~~------~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 184 SVADTKGVKRK------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp EEECTTTCSEE------EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred EEEeCCCCceE------EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC
Confidence 99998754211 1122233457899999966666665433 4789999987543322223233567899999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
..++++-...+.|..+|+..... ...... .-.....+++. +..++.+-...+.|..+|..+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 258 GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred CEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence 75556555667899999875332 222222 23455677774 3347777777888999986553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00078 Score=62.14 Aligned_cols=253 Identities=9% Similarity=0.031 Sum_probs=139.6
Q ss_pred ceeEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC---Ce-
Q 015484 117 EVNRARCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD---NK- 190 (406)
Q Consensus 117 ~v~~i~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~- 190 (406)
....++|.|+ +..++++-.. +.|+.++..... +..+........++++++++. ++++.... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~---------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY---------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE---------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE---------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence 4678899985 3344444333 789999986532 223333445678999999988 66665421 12
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-c-ccCCCeeEEEecC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-K-AHEKEVNYLSFNP 268 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~i~~~~ 268 (406)
+...+.... .... ..+. .-.....++++|.++.++++-..++.|+.+|..++.....+ . .....-..++|+|
T Consensus 209 v~~~~~~~~-~~~~----~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp 282 (433)
T 4hw6_A 209 IYLFTRASG-FTER----LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP 282 (433)
T ss_dssp EEEECGGGT-TCCE----EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT
T ss_pred EEEEECCCC-eecc----cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC
Confidence 333332211 1100 1111 22345678889866777777777889999998866542222 1 1122234699999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCC---cEEecCC---------------CCCeEEEEE---------cCCCCCEEEEE
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVP---LHILSSH---------------TEEVFQVEW---------DPNHETVLASS 321 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h---------------~~~v~~i~~---------~p~~~~~l~s~ 321 (406)
+++.++++-...+.|+.+++...... ...+.+. -.....+++ .+++. ++++-
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD 361 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCD 361 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEE
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEE
Confidence 99855555556778999886532110 1122111 123677898 66664 66666
Q ss_pred eCCCcEEEEeCCCCCcccccccccCC-CCeeEEE---ecCCCCCeeeEEeC-CCCCcEEEEEeCCCcEEEEeCC
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDG-PPELLFS---HGGHKAKISDFSWN-KNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~---~~~h~~~v~~~~~s-~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
...+.|+.++... ........... ..-..-- ....-.....|+++ +++. ++++=...+.|+.++++
T Consensus 362 ~~n~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 362 RDSHTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEECTTS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEECCCC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence 6778899887532 11111000000 0000000 00012346789999 5665 66666667788887764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00035 Score=61.22 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=120.4
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--CcEEEEE
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--CQLMIWD 244 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~i~d 244 (406)
....+++|++++. ++++-..++.|..||..... . ..+ .....+..+++.+ +++++++.... ..|..+|
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~----~---~~~-~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ----Q---IHA-TVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE----E---EEE-ECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCCce----E---EEE-eCCCCceeEEEcC-CCcEEEEeccCCcceEEEEc
Confidence 4567899999877 77777688999999876521 1 111 1234688899998 45666555432 2477778
Q ss_pred CCCCccccccc-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE---------ecCCCCCeEEEEEcCCC
Q 015484 245 LRTNQTQQRVK-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI---------LSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 245 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------~~~h~~~v~~i~~~p~~ 314 (406)
..+++...... ........++..+.+. .+++-..++.|.++|.......+.. ....-...+.| +|++
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 77766432221 1122234455444443 4555545789999997643110110 00111245666 7888
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
+.++++-...+.|..|++...+.. ......... .....++++++|. ++++....+.|.+++....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~--------~~~~~~~~~----~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKP--------GEPEIFVEQ----TNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB--------CCCEEEEES----CCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCC--------CccEEEecc----CCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC
Confidence 777777778899999998642110 011222221 3467899999997 6777666788999997643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00051 Score=63.35 Aligned_cols=254 Identities=8% Similarity=0.025 Sum_probs=136.0
Q ss_pred ceeEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC-CC----e
Q 015484 117 EVNRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH-DN----K 190 (406)
Q Consensus 117 ~v~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg----~ 190 (406)
....++++| ++..++++ ...+.|+.+|..... +..+.........|+|++++. .|+.+.. ++ .
T Consensus 138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~---------v~~~~~~~~~P~~ia~d~~G~-~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEY---------VSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTE---------EEEEECCCSCEEEEEECTTSS-EEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCE---------EEEEecCCCCcceEEEeCCCC-EEEEEeCCCCcccce
Confidence 457788888 34344444 333788888887632 223333445678999999887 5665544 22 2
Q ss_pred EEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-ccCCCeeEEEecCC
Q 015484 191 ICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AHEKEVNYLSFNPY 269 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~ 269 (406)
+.+++. .+.... . ..+.. ......++++|.++.++++-..++.|..++...+....... ......+.++|+|+
T Consensus 207 v~~~~~-~g~~~~-~---~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd 280 (430)
T 3tc9_A 207 NYILTR-ESGFKV-I---TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS 280 (430)
T ss_dssp EEEEEG-GGTSCS-E---EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred EEEEeC-CCceee-e---eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence 333443 222211 0 11111 23456788998677888777788899999988665322221 11234678999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCC---CcEEecCC---------------CCCeE-EEEEc--------CCCCCEEEEEe
Q 015484 270 NEWVLATASSDTTVALFDMRKMTV---PLHILSSH---------------TEEVF-QVEWD--------PNHETVLASSA 322 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~h---------------~~~v~-~i~~~--------p~~~~~l~s~~ 322 (406)
++.++++-...+.|..++...... .+..+.+. -.... .+... +++ .+.++-.
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~ 359 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDR 359 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEG
T ss_pred CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEEC
Confidence 985555556677899987653211 01111111 01123 44443 234 3455555
Q ss_pred CCCcEEEEeCCCCCcccccccccC-CCCeeEEE---ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAED-GPPELLFS---HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~---~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
..+.|+.++... .......... +..-..-- ..+.-.....++++|++..++++-...+.|+.++++
T Consensus 360 ~n~~I~~i~~~G--~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 360 ENHCIRILTPQG--RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEECTTS--EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCC--cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 567787777321 1110000000 00000000 000112478899999533367776667788887764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00046 Score=64.13 Aligned_cols=262 Identities=10% Similarity=0.029 Sum_probs=144.5
Q ss_pred eeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----CCCCeeEEEe-------cCCCCCeEEEe
Q 015484 118 VNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----HDKEGYGLSW-------SPFKEGYLVSG 185 (406)
Q Consensus 118 v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------~~~~~~~l~s~ 185 (406)
...|+|.|. +.+++++....+.|++.|+..... ..+.. .......|+| ++++. .|+.+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v---------~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML---------SSPLNINTIPTNRIRSIAFNKKIEGYADEAE-YMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE---------EEEECCTTSSCSBEEEEEECCCBTTTBCTTC-EEEEE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE---------EEEEccCccccCCCcEEEEeecccccCCCCC-EEEEE
Confidence 568899984 445666665556788888877322 22221 1235789999 99887 66666
Q ss_pred cCCC-------eEEEEeCCC-ccCCc-e-eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC-------CC
Q 015484 186 SHDN-------KICLWDVSA-LAQDK-V-IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR-------TN 248 (406)
Q Consensus 186 ~~dg-------~i~iwd~~~-~~~~~-~-~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~-------~~ 248 (406)
...+ .|.+++... +.... . ...+..+ .....++.+|.++.++++-..++.|..+|+. ++
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 5543 255665333 11110 0 0111111 2345778899778888888889999999997 45
Q ss_pred cc-----------cccc-c-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc---EEecCC---C-------
Q 015484 249 QT-----------QQRV-K-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL---HILSSH---T------- 302 (406)
Q Consensus 249 ~~-----------~~~~-~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~h---~------- 302 (406)
.. ...+ . ......+.|+|+|++..++++-+....|+.++.......+ ..+.+. .
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~ 366 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG 366 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence 43 0111 1 1233457899999998445555566788886654321101 112111 1
Q ss_pred -----CCeE-EEEEc-------CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC----------CCCeeEEEecCCC
Q 015484 303 -----EEVF-QVEWD-------PNHETVLASSADDRRLMVWDLNRIGDEQLELDAED----------GPPELLFSHGGHK 359 (406)
Q Consensus 303 -----~~v~-~i~~~-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~ 359 (406)
.... .+... +.+ .++++-....+|+.++... .......... +...=.....+.-
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f 443 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARF 443 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred cccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCC--CEEEEecccccccccCccccccCCCCchhhhhc
Confidence 1234 44444 344 3566666778898888432 1111111000 0000000000112
Q ss_pred CCeeeEEeCCC-CCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 360 AKISDFSWNKN-DPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 360 ~~v~~~~~s~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.....|+++++ +. ++++=.....|+.+++.....-.+
T Consensus 444 ~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 444 RDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp SSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC----
T ss_pred CCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCccccc
Confidence 34678999996 66 677766778999999988766443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=78.00 Aligned_cols=229 Identities=7% Similarity=0.014 Sum_probs=130.5
Q ss_pred CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-cCCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 137 SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-SHDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 137 dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.+.|++.++..... ..+......+.+|+|.+.+. .|+.+ ...+.|..+++.......... ..+....
T Consensus 385 ~~~I~~id~~~~~~---------~~~~~~~~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY---------TSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDI 452 (699)
T ss_dssp TTC-CEECTTSCCE---------ECCSCCCTTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC
T ss_pred ccceEEEeCCCCcc---------eeeeccCcceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCC
Confidence 34577777765211 11112224567899998766 55544 456789999987511000000 1111111
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMRKMTVP 294 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~ 294 (406)
.....|++.+.+++++++-...+.|.++++........+.........|+++|.+..++++-... +.|.++++.....
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~- 531 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 531 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence 23456777765677777766778899999875543333332234567889999766455544333 6888888764332
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
.......-...+.|+|+|++..++++-+..+.|..+++..... ..+....+.......|++..+ ++
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~~~~~~~P~glavd~~--~l 597 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVFED--KV 597 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCCSSSCSSCCCCEEETT--EE
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEecCCcCCCceEeEEECC--EE
Confidence 2222222345678999998777777777788999999864211 111111111223455666543 36
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 015484 375 ISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~ 392 (406)
+++....+.|..++..++
T Consensus 598 ywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEECSTTTCEEEEETTTE
T ss_pred EEEeCCCCeEEEEEccCC
Confidence 667666788888887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0017 Score=64.81 Aligned_cols=246 Identities=10% Similarity=-0.026 Sum_probs=144.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCc--eeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPD--LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..|.++...+++. |-.|+.++-|..++.......... ..+. ....-....|.++...+++. |..|+.++-|..
T Consensus 313 ~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~ 387 (781)
T 3v9f_A 313 ASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWS-YSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINV 387 (781)
T ss_dssp SCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC-----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEE
T ss_pred CeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeec-cCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEE
Confidence 5688888888773 555676666888887653211000 0000 00001235688888877654 667776677888
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~ 271 (406)
|+..+..... +. .........|.++...+ ++.+. .|+.++.|..+|.++++..... ......|.++...+++.
T Consensus 388 ~~~~~~~~~~-~~--~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 388 FENGKRVAIY-NK--ENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EETTEEEEEC-C-------CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EECCCCeEEE-cc--CCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 9876532110 00 00012345688888775 45555 4666677999998776532221 12346789998888776
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCC-----CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSH-----TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-----~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
|..|+. +.|..||..+... ....... ...|.++...+++. |..|+.++-+..||.....
T Consensus 463 --lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~---------- 526 (781)
T 3v9f_A 463 --IWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQL---------- 526 (781)
T ss_dssp --EEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECTTCCE----------
T ss_pred --EEEEEC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCe----------
Confidence 555555 4589999876443 1211111 35799999999886 4455554457778875411
Q ss_pred CCCeeEEEec----CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHG----GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~----~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+. -....|.++...++|. +.++. .+|.|..|+..++.+
T Consensus 527 -----~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T-~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 527 -----VRKFNQYEGFCSNTINQIYRSSKGQ-MWLAT-GEGLVCFPSARNFDY 571 (781)
T ss_dssp -----EEEECTTTTCSCSCEEEEEECTTSC-EEEEE-TTEEEEESCTTTCCC
T ss_pred -----EEEccCCCCCCCCeeEEEEECCCCC-EEEEE-CCCceEEECCCCCcE
Confidence 11111 1234688999999888 45443 466558888877654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0016 Score=64.60 Aligned_cols=210 Identities=8% Similarity=-0.017 Sum_probs=129.4
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
.....+..|+|.+.+..++.+-...+.|+.+++...... ......+........+|++.+.++++.++-...+.|.
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~----~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 344567889999866567777777788988888752110 0112223223345668888877764666667788999
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
+.++..... . ..+...-.....|+++|..+.++++-... +.|...++........+...-...+.|++++.+.
T Consensus 497 v~~ldG~~~----~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 497 VADTKGVKR----K--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp EEETTSSSE----E--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred EEeCCCCeE----E--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence 999875321 1 11222334588999999666666665333 7899999875443333333335678999998777
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
.++++-...+.|..+++..... ...+.. .-.....|++.. .+++++-...+.|...+..+.
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCC
Confidence 4555555567899999875433 223322 123455677643 356777777788888886554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0013 Score=65.76 Aligned_cols=255 Identities=9% Similarity=0.028 Sum_probs=145.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCC--C----CCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--C----DPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...|.++...+++ . |..|+..+-|.+++........... . .+.....-....|.++...++|. |-.|+.+
T Consensus 257 ~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKDN-K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTTS-E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBS
T ss_pred CceEEEEEECCCC-C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecC
Confidence 3568888888877 3 5556664458888887632110000 0 00000011345688988887665 6777777
Q ss_pred CeEEEEeCCCccCCceeeeee----eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCe
Q 015484 189 NKICLWDVSALAQDKVIDAMH----VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEV 261 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v 261 (406)
+-|..++....... .+.... ........|.++...+ ++.+. .|+.++.|..||..++...... ......|
T Consensus 333 ~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 333 GGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred CeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 77888987654321 110000 0011235688888775 45544 5676677999998765432211 1234678
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
.++...+++. |..|+.++.|..+|.++.. ...+. .....|.++...+++. |..|+. +-|..||.....-.
T Consensus 410 ~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 410 LCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEEEECTTSC--EEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCC
T ss_pred EEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEE
Confidence 8998888776 5557776679999886543 22332 2346799999888875 444555 56888887652211
Q ss_pred cccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 339 QLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
... .. .. . ......|.++...++|. +.++ +.++-|..|+..++.+
T Consensus 483 ~~~-~~-~~-~------~~~~~~i~~i~~d~~g~-lWig-t~~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 483 HHY-DT-SN-S------QLLENFVRSIAQDSEGR-FWIG-TFGGGVGIYTPDMQLV 527 (781)
T ss_dssp EEE-CT-TT-S------SCSCSCEEEEEECTTCC-EEEE-ESSSCEEEECTTCCEE
T ss_pred ecc-cC-cc-c------ccccceeEEEEEcCCCC-EEEE-EcCCCEEEEeCCCCeE
Confidence 000 00 00 0 01135688999999888 4444 4434477788776543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00023 Score=69.67 Aligned_cols=154 Identities=11% Similarity=0.100 Sum_probs=86.8
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecC--CCCCeEEEecC------CCeEEEEeCCCcc
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSP--FKEGYLVSGSH------DNKICLWDVSALA 200 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~~~~l~s~~~------dg~i~iwd~~~~~ 200 (406)
.+++++.++.|..+|..+++. .-.+.... .....+.-+| .+. .++.+.. +|.|..+|..+++
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~--------~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKA--------IWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCE--------EEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred EEEEEcCCCEEEEEECCCCCE--------eeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 577778899999999987543 22222110 0000010111 133 5555543 5899999999886
Q ss_pred CCceeeeeeeee-------------------------ccCccEEEEEeeCCCCCEEEEEecCC-----------------
Q 015484 201 QDKVIDAMHVYE-------------------------AHESVVEDVSWHLKNENLFGSAGDDC----------------- 238 (406)
Q Consensus 201 ~~~~~~~~~~~~-------------------------~~~~~i~~i~~~p~~~~~l~~~~~dg----------------- 238 (406)
....+....... ........+++.| ...+++.++.++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 543332100000 0111122467777 456666776665
Q ss_pred --cEEEEECCCCcccccccc--cC-------CCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 --QLMIWDLRTNQTQQRVKA--HE-------KEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 --~i~i~d~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+-.+.. |. .+.....+..++. ..++.++.+|.++++|.++++.
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 499999999998766532 21 2222222222342 2588899999999999988764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00029 Score=70.03 Aligned_cols=196 Identities=11% Similarity=0.136 Sum_probs=109.6
Q ss_pred CeeEEEec-CCCCCeEEEe-cCCC----eEEEEeCCCc-cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---
Q 015484 168 EGYGLSWS-PFKEGYLVSG-SHDN----KICLWDVSAL-AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--- 237 (406)
Q Consensus 168 ~v~~l~~~-~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--- 237 (406)
.+...+|| |+|+ +|+-+ +.+| .|+++|+.++ .... ..+. .....++|+|++..++++ ..+
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~~~~---~~~~~~~WspDg~~l~y~-~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIA-----DKVS---GTNGEIVWGPDHTSLFYV-TKDETL 244 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCC-----CCEE---EECSCCEECSSTTEEEEE-EECTTC
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCC-----cccc---CceeeEEEecCCCEEEEE-EECCCC
Confidence 57789999 9998 66643 3333 5999999887 4211 0111 123568899954445544 443
Q ss_pred --CcEEEEECCCCccc--cccc-ccCCCeeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCCc--EEec-CCCCCeEE
Q 015484 238 --CQLMIWDLRTNQTQ--QRVK-AHEKEVNYLSFNPYNEWVLATASS--DTTVALFDMRKMTVPL--HILS-SHTEEVFQ 307 (406)
Q Consensus 238 --g~i~i~d~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~--~~~~-~h~~~v~~ 307 (406)
..|.++++.++... ..+. ........+.|+|+++.++++... ...|.++|+.+..... ..+. .......+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 35888888776432 2222 223346678999999955544433 2368888988753223 3343 33455566
Q ss_pred EEEcCCCCCEEEEEeCC--C--cEEEEeCCCCCcccccccccCCCCee-EEEecCCCCCeeeEEeCCCCCcEEEEEeCCC
Q 015484 308 VEWDPNHETVLASSADD--R--RLMVWDLNRIGDEQLELDAEDGPPEL-LFSHGGHKAKISDFSWNKNDPWVISSVADDN 382 (406)
Q Consensus 308 i~~~p~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg 382 (406)
+.|+. ++.+++.+..+ + .|..+++..... ... +.... ....+.++.+. +.+++++...++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-----------~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g 389 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-----------WSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAG 389 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-----------CCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETT
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-----------ceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCC
Confidence 66654 44456665554 3 566666543110 111 11111 11134555655 445788888888
Q ss_pred cEEEEe
Q 015484 383 TVQVWQ 388 (406)
Q Consensus 383 ~i~iw~ 388 (406)
..+||-
T Consensus 390 ~~~l~~ 395 (751)
T 2xe4_A 390 LTRIWT 395 (751)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 755553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.6e-05 Score=75.64 Aligned_cols=207 Identities=8% Similarity=-0.006 Sum_probs=121.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..|+|.+.+..++++-...+.|+.+++...... ......+...-....+|++.+.+..++++-...+.|.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~ 480 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEE
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEE
Confidence 3456788999876566666566788999888751100 000111111122345778876555366665667899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++...... ..+.........|+++|.++.++++-... +.|..+++........+...-...+.|+|+|++..+
T Consensus 481 d~dg~~~~------~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~L 554 (699)
T 1n7d_A 481 DTKGVKRK------TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554 (699)
T ss_dssp BSSSCCEE------EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCE
T ss_pred ecCCCceE------EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEE
Confidence 98753211 11111223467888998666666554333 778888876433222122223446789999987757
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+++-+..+.|..+|+..... ...+.. .......|++..+ .++++....+.|..++..+
T Consensus 555 Y~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 555 YWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp EEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred EEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence 77766778999999875332 222221 1123445566543 4677777788999998754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0061 Score=58.96 Aligned_cols=224 Identities=11% Similarity=0.063 Sum_probs=138.8
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeecc
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH 214 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 214 (406)
....|+..++..... ...+. ..-..+.+|+|++.+...+++-..++.|..++++..... ......
T Consensus 13 ~~~~I~~i~l~~~~~--------~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------~v~~~g 78 (628)
T 4a0p_A 13 RRADIRRISLETNNN--------NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------HVVEFG 78 (628)
T ss_dssp ETTEEEEEESSCTTC--------EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSS
T ss_pred eCCcEEEEECCCCCc--------ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------EEEeCC
Confidence 456799999876311 11111 123457899999977635556566789999988754221 111112
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE-eCCCcEEEEeCCCCCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA-SSDTTVALFDMRKMTV 293 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 293 (406)
......+++.+.+++++++-...+.|.+.++........+...-.....|+++|....++.+- +..+.|...++....
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~- 157 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE- 157 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-
Confidence 235677888876778888777788999999875432222223344568999999766344443 225678888876543
Q ss_pred CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc
Q 015484 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW 373 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 373 (406)
...+...-...+.|++++.++.+.++-...+.|..+|+..... +.+.. .......+++.. +.
T Consensus 158 -~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~------------~v~~~---~l~~P~glav~~-~~- 219 (628)
T 4a0p_A 158 -RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR------------EVIAD---DLPHPFGLTQYQ-DY- 219 (628)
T ss_dssp -CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEE---CCSCEEEEEEET-TE-
T ss_pred -eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce------------EEeec---cCCCceEEEEEC-CE-
Confidence 2333334567899999998776666767788999999865211 22211 223355677654 33
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 015484 374 VISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 374 ~l~s~~~dg~i~iw~~~~~ 392 (406)
++.+-...+.|...+..++
T Consensus 220 ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 220 IYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEETTTTEEEEEETTTC
T ss_pred EEEecCCCCEEEEEECCCC
Confidence 5666555677777776554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0089 Score=53.40 Aligned_cols=241 Identities=8% Similarity=0.059 Sum_probs=121.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---CCCeEEEecC-C--
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF---KEGYLVSGSH-D-- 188 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~~~-d-- 188 (406)
-.....++|.|++ .++++ ...|.|++++ .. ........ + ...........|+|+|+ +. .|..+.. .
T Consensus 30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g-~~~~~~~~-~--v~~~g~~~p~gia~~pdf~~~g-~lYv~~~~~~~ 101 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR-EG-RLSTYAEL-S--VYHRGESGLLGLALHPRFPQEP-YVYAYRTVAEG 101 (352)
T ss_dssp CSCEEEEEECTTS-CEEEE-ETTTEEEEEE-TT-EEEEEEEC-C--CCCSTTCSEEEEEECTTTTTSC-EEEEEEEECTT
T ss_pred CCCceEEEEcCCC-eEEEE-eCCCeEEEEE-CC-CccEeecc-e--EeecCCCCceeEEECCCCCCCC-EEEEEEecCCC
Confidence 3467899999999 44544 5669999998 22 11100000 0 11122356789999997 44 4444432 2
Q ss_pred ---CeEEEEeCCCccCCceeee-eeeee---ccCccEEEEEeeCCCCCEEEEEec-------------CCcEEEEECCCC
Q 015484 189 ---NKICLWDVSALAQDKVIDA-MHVYE---AHESVVEDVSWHLKNENLFGSAGD-------------DCQLMIWDLRTN 248 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~-~~~~~---~~~~~i~~i~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~ 248 (406)
+.|..++...... ...+. +..+. ........++|.| ++.++++.+. .|.|.-++....
T Consensus 102 ~~~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 102 GLRNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp SSEEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CCccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 6788888764311 01111 11122 1112346899999 5577766442 256666665431
Q ss_pred ------------cccccccccCCCeeEEEecC-CCCcEEEEEeCCCc--------EEEEeCCC---------------CC
Q 015484 249 ------------QTQQRVKAHEKEVNYLSFNP-YNEWVLATASSDTT--------VALFDMRK---------------MT 292 (406)
Q Consensus 249 ------------~~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~--------i~vwd~~~---------------~~ 292 (406)
.....+...-.....++|+| .+. ++++-..... |.+..... ..
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~ 258 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYR 258 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSC
T ss_pred CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCc
Confidence 01111111112356789999 566 5554433333 44432211 01
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
.|+..+. +......++| .++. ++++.-..+.|...++.......... ....+ +. -...+.++++.|+|.
T Consensus 259 ~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~-----~~~~~--~~-~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 259 DPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVL-----RVETA--LS-GFGRLREVQVGPDGA 327 (352)
T ss_dssp CCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEE-----EEEEE--EE-SSCCEEEEEECTTSC
T ss_pred CCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeec-----chhee--cc-cCCCeeEEEECCCCc
Confidence 2344442 2345677888 3453 56666666777777765422100000 00111 12 235689999999998
Q ss_pred cEEEEE
Q 015484 373 WVISSV 378 (406)
Q Consensus 373 ~~l~s~ 378 (406)
++++.
T Consensus 328 -lyv~~ 332 (352)
T 2ism_A 328 -LYVTT 332 (352)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 55554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00017 Score=70.53 Aligned_cols=235 Identities=6% Similarity=-0.073 Sum_probs=119.1
Q ss_pred CceeEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CC-----
Q 015484 116 GEVNRARCMPQKPNLVGTKT-SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HD----- 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d----- 188 (406)
....++++.+++ .+++.|+ .++.+.+||..+..-. ....+... ..-.+++..++++ +++.|+ .+
T Consensus 243 ~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~W~------~~~~~~~~-R~~~s~~~~~dg~-iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 243 MFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDSWI------PGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFE 313 (656)
T ss_dssp CSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTEEE------ECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCC
T ss_pred CccccccCCCCC-CEEEeCCCCCCceEEecCcCCcee------ECCCCCcc-ccccceEEecCCe-EEEEeCcccCCccc
Confidence 334456777777 5777777 4568999998874221 11112111 1123455556677 888887 34
Q ss_pred CeEEEEeCCCccCCceeeeeeee--eccCccEEEEEeeCCCCCEEEEEecCC---------cEEEEECCCCccccccccc
Q 015484 189 NKICLWDVSALAQDKVIDAMHVY--EAHESVVEDVSWHLKNENLFGSAGDDC---------QLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~ 257 (406)
..+.+||..+..- ..+... ......-....+.. ++.+++.++.+| .+..||..+..........
T Consensus 314 ~~~e~yd~~t~~W----~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~ 388 (656)
T 1k3i_A 314 KNGEVYSPSSKTW----TSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388 (656)
T ss_dssp CCEEEEETTTTEE----EEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC
T ss_pred ccceEeCCCCCcc----eeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc
Confidence 5689999876431 111000 00000000011222 455555665544 4678888776533222111
Q ss_pred C---------CCeeEEEecCCCCcEEEEEeCCC-----------cEEEEeCCCCCCCcEEe---cCCCCC-eEEEEEcCC
Q 015484 258 E---------KEVNYLSFNPYNEWVLATASSDT-----------TVALFDMRKMTVPLHIL---SSHTEE-VFQVEWDPN 313 (406)
Q Consensus 258 ~---------~~v~~i~~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~---~~h~~~-v~~i~~~p~ 313 (406)
. ..-.++.+...+..+++.|+.++ .|.+||..+..- ... ..+... -.++...|+
T Consensus 389 ~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTT
T ss_pred ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCC
Confidence 1 12244455443444888887532 577888765431 111 112222 234566678
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC
Q 015484 314 HETVLASSADD-----------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380 (406)
Q Consensus 314 ~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~ 380 (406)
++ +++.|+.+ ..+.+||..+..-. .+..............+.|+++ +++.||.
T Consensus 467 g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~------------~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 467 GS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY------------KQNPNSIVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp SC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE------------ECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred CC-EEEECCcccCcCcCCCCcccceEEEcCCCCcee------------ecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence 86 78888754 45888887652110 0000011111122345678898 7888874
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0076 Score=58.19 Aligned_cols=228 Identities=8% Similarity=0.035 Sum_probs=131.8
Q ss_pred CCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccC
Q 015484 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 136 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
....|++.++..... . ...+...-....+++|++.+..++++=...+.|..++++...... ..+...-
T Consensus 16 ~~~~I~~i~~~~~~~------~-~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~-----~v~~~~~ 83 (619)
T 3s94_A 16 NRRDLRLVDATNGKE------N-ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-----NVVVSGL 83 (619)
T ss_dssp CSSBEEEECCC----------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-----EEECSSC
T ss_pred ccccEEEEeCCCCcc------e-EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-----EEEeCCC
Confidence 355688888875210 0 111222334577999998776344444456889888887542111 1122222
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTVP 294 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 294 (406)
.....+++.+.+++++++-...+.|.+.++........+...-.....|+++|.+..++++-- ..+.|...++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 468889999867778878778899999998754432222233445678999998663555432 245777777764332
Q ss_pred cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcE
Q 015484 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374 (406)
Q Consensus 295 ~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~ 374 (406)
.......-...+.|++++.++.+.++-...+.|...|+...... .+. .+.......+++..+ .+
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-----------~~~---~~~~~~P~gi~~~~~--~l 226 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-----------AVV---KGSLPHPFALTLFED--IL 226 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------------CCCEEESSS--EE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-----------EEE---eCCCCCceEEEEeCC--EE
Confidence 22333334568999999987766666667788988888642111 111 111122456677655 35
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 015484 375 ISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 375 l~s~~~dg~i~iw~~~~~ 392 (406)
+.+-...+.|...+..++
T Consensus 227 y~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEECTTTCSEEEEESSSC
T ss_pred EEecCCCCEEEEEECCCC
Confidence 666556677777777655
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0031 Score=60.38 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=35.6
Q ss_pred cEEEEECCCCccccccccc----------CCCeeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAH----------EKEVNYLSFNPYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~----------~~~v~~i~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
.|..+|.++++.+-.+... ..++. +...++|+ .+++.++.+|.++++|..+++.
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 5999999999886655321 12221 22223453 3677888899999999988764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0024 Score=58.89 Aligned_cols=204 Identities=11% Similarity=0.128 Sum_probs=114.9
Q ss_pred CeeEEEecCC--CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC---C-cEE
Q 015484 168 EGYGLSWSPF--KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD---C-QLM 241 (406)
Q Consensus 168 ~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g-~i~ 241 (406)
...+|+|+|+ +. .|..+...+.|+.+|+.++.. ..+.........++++++ ++++++.... . .+.
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v-------~~~~~~~~~P~giavd~d-G~lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYV-------DIKTTNIGQCADVNFTLN-GDMVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEE-------EEECCCCSCEEEEEECTT-CCEEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEE-------EEeecCCCCccEEEECCC-CCEEEEcCCCCcccceEE
Confidence 3468999985 33 566665558999999866432 122223456889999984 5566554321 1 233
Q ss_pred EEECCCCccc-ccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec-CCCCCeEEEEEcCCCCCEE
Q 015484 242 IWDLRTNQTQ-QRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTVPLHILS-SHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 242 i~d~~~~~~~-~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~l 318 (406)
..+...+... ..+. .......++++| .+. ++++-..++.|+.+|..++......+. .....-..++|+|+++.++
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 211 LFTRASGFTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp EECGGGTTCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred EEECCCCeecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 3332221110 1111 233456788999 555 666655677899999875432011111 1122345799999998667
Q ss_pred EEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe------------cCCCCCeeeEEe---------CCCCCcEEEE
Q 015484 319 ASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH------------GGHKAKISDFSW---------NKNDPWVISS 377 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~~h~~~v~~~~~---------s~~~~~~l~s 377 (406)
++-...+.|..+++........ .+..+.-. ...-.....+++ .+++. ++++
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~-------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyva 360 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLA-------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFC 360 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBC-------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccC-------cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEE
Confidence 7777788999988653211100 00011000 011223667888 67776 6666
Q ss_pred EeCCCcEEEEeCC
Q 015484 378 VADDNTVQVWQMT 390 (406)
Q Consensus 378 ~~~dg~i~iw~~~ 390 (406)
-...+.|+.++..
T Consensus 361 D~~n~~I~~~~~~ 373 (433)
T 4hw6_A 361 DRDSHTVRVLTPE 373 (433)
T ss_dssp ETTTTEEEEECTT
T ss_pred ECCCCEEEEECCC
Confidence 6667788888853
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0069 Score=52.75 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=120.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----C--CCCeeEEEe---cCCCCCeEEEec
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----H--DKEGYGLSW---SPFKEGYLVSGS 186 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~~~~~~~l~s~~ 186 (406)
.-.-+++|.+....++++.-..|+|..|+........ . .+.+ . ...+.+|.| .|.+. ++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~------~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~ 84 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN------V-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMK 84 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE------E-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE------E-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEc
Confidence 3455788988665666666689999999987432110 1 1111 1 113579999 57755 655433
Q ss_pred -------------CCCeEEEEeCC---CccCCceeeeeeeeec-------cCccEEEEEeeCCCCCEEEEEecC-CcEEE
Q 015484 187 -------------HDNKICLWDVS---ALAQDKVIDAMHVYEA-------HESVVEDVSWHLKNENLFGSAGDD-CQLMI 242 (406)
Q Consensus 187 -------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~i~~i~~~p~~~~~l~~~~~d-g~i~i 242 (406)
.+..|..+|+. +++.......-....+ -....++++..+ .++..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEE
Confidence 26789999998 5543322110000000 113588999998 67777788887 88887
Q ss_pred EECCCCcccccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CC---CCCeEEE-EE
Q 015484 243 WDLRTNQTQQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SH---TEEVFQV-EW 310 (406)
Q Consensus 243 ~d~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h---~~~v~~i-~~ 310 (406)
.+.... .+..+ .......+.|+++|++. +|++....|.|..+|++.......... +. -.....| .-
T Consensus 164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~ 241 (334)
T 2p9w_A 164 VSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV 241 (334)
T ss_dssp ECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred EeCCCC-EEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence 776643 22222 11123467999999998 555555599999999984322001111 21 1223443 22
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
-.+|+.++++....+.+.+.+...
T Consensus 242 ~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 242 PVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EETTEEEEEEEETTEEEEEECSST
T ss_pred ccCCEEEEEEcCCCCEEEEECCCC
Confidence 335654466666677666665543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.031 Score=54.05 Aligned_cols=201 Identities=7% Similarity=-0.023 Sum_probs=131.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd 195 (406)
..+..|+|.+.+..++.+-..++.|+.+++..... ...+........++++.+.+.++.++-...+.|.+.+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~--------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL--------EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc--------EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 46889999997767777777889999998875211 1222222234567888766664566666678999999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 274 (406)
++.... ..+ ....-.....|++.|..+.++.+- +..+.|...++..... ..+...-...+.|++++.+..++
T Consensus 109 ~dG~~~-~~l-----~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY 181 (628)
T 4a0p_A 109 LDGQHR-QVL-----VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLY 181 (628)
T ss_dssp TTSTTC-EEE-----ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEE
T ss_pred cCCCcE-EEE-----EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEE
Confidence 875421 111 112334578999999666666654 2357888888865443 22222345678999999877566
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
++-...+.|..+|+..... ..+.........+++.. + .++++-...+.|...|..+.
T Consensus 182 ~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 182 WTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 6666677999999976443 33333344567888865 3 46667667888888886554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0011 Score=60.99 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=96.0
Q ss_pred CeeEEEecC-CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC----cEEE
Q 015484 168 EGYGLSWSP-FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC----QLMI 242 (406)
Q Consensus 168 ~v~~l~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~i 242 (406)
....|+++| ++. .|..+...+.|+.+|+..... ..+.........++|++.+..++++...++ .+..
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v-------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYV-------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEE-------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEE-------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 346889998 355 566665558899999876431 122223456889999984333665554332 2333
Q ss_pred EECCCCccc--ccccccCCCeeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEE
Q 015484 243 WDLRTNQTQ--QRVKAHEKEVNYLSFNP-YNEWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 243 ~d~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l 318 (406)
++ +.+... ..+. .......++++| ++. ++++-..++.|..++...... .+... ........|+|+|++++++
T Consensus 210 ~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 210 LT-RESGFKVITELT-KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp EE-GGGTSCSEEEEE-ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEEE
T ss_pred Ee-CCCceeeeeeec-cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEEE
Confidence 44 333322 2222 233457788999 555 666666778999999875432 11111 1224578999999998667
Q ss_pred EEEeCCCcEEEEeCCC
Q 015484 319 ASSADDRRLMVWDLNR 334 (406)
Q Consensus 319 ~s~~~dg~i~iwd~~~ 334 (406)
++-...+.|..++...
T Consensus 286 v~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEeCCc
Confidence 7777788999988653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0064 Score=53.00 Aligned_cols=164 Identities=11% Similarity=0.151 Sum_probs=104.7
Q ss_pred eeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec------cCccEEEEEe---eCCCCCEE
Q 015484 161 RLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA------HESVVEDVSW---HLKNENLF 231 (406)
Q Consensus 161 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~i~~i~~---~p~~~~~l 231 (406)
.+.....---+++|.+....++++.-..|+|..|+...+... .+ .+.. ....+..|.| .| .++++
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~ 80 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----NV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLF 80 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----EE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----EE-ecCCccccCCCcceeeEEEEeccCC-CCcEE
Confidence 344444445689998866624555557999999998743211 11 1111 1124578999 57 46777
Q ss_pred EEEec-------------CCcEEEEECC---CCccccccc--c-----------cCCCeeEEEecCCCCcEEEEEeCC-C
Q 015484 232 GSAGD-------------DCQLMIWDLR---TNQTQQRVK--A-----------HEKEVNYLSFNPYNEWVLATASSD-T 281 (406)
Q Consensus 232 ~~~~~-------------dg~i~i~d~~---~~~~~~~~~--~-----------~~~~v~~i~~~~~~~~~l~~~~~d-g 281 (406)
++... +..|..||+. +++.+.... . .....+.++..++|+ ..++++.. +
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~ 159 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMP 159 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSC
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCC
Confidence 65432 6789999999 777654332 1 113478999999999 77777777 7
Q ss_pred cEEEEeCCCCCCCcEEec------CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 282 TVALFDMRKMTVPLHILS------SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~------~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.|..++.... .+..+. ......+.|+++|++.. |++....|.+..+|+..
T Consensus 160 ~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCE-EEEEcCCCeEEEEcCCC
Confidence 7777776543 122221 11234779999999975 55554499999999874
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.019 Score=55.17 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=36.8
Q ss_pred CcEEEEECCCCcccccccccC----------CCeeEEEec-CCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHE----------KEVNYLSFN-PYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~----------~~v~~i~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+.|..+|.++++.+-.+.... .++. +... .+|+ .+++.++.+|.++++|.++++.
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 479999999998866553221 1221 2222 4552 3678888999999999988764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.039 Score=52.88 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=37.2
Q ss_pred CcEEEEECCCCcccccccc--cC--------CCeeEEEec-CCCC--cEEEEEeCCCcEEEEeCCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKA--HE--------KEVNYLSFN-PYNE--WVLATASSDTTVALFDMRKMTV 293 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~--~~--------~~v~~i~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~ 293 (406)
+.|..+|.++++.+-.+.. |. .++. +... .+|+ .+++.++.+|.++++|.++++.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 5899999999998766532 21 1221 1221 3453 3788899999999999988664
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0045 Score=60.52 Aligned_cols=154 Identities=8% Similarity=0.087 Sum_probs=90.8
Q ss_pred EEEecCCCCCeEEEecCCC-------------------eEEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEee
Q 015484 171 GLSWSPFKEGYLVSGSHDN-------------------KICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSWH 224 (406)
Q Consensus 171 ~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~ 224 (406)
.+++.+... .++.++.++ .|..+|..+++.....+. ..|. .+.....+.
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~----~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV----TPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES----STTCCSCCCCCSCEEEEEEE
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec----CCCccccccCCCCcEEEEec
Confidence 467877766 788877666 389999988764332211 1111 222211222
Q ss_pred CCCCC---EEEEEecCCcEEEEECCCCcccccccccC------------CC------------------------eeEEE
Q 015484 225 LKNEN---LFGSAGDDCQLMIWDLRTNQTQQRVKAHE------------KE------------------------VNYLS 265 (406)
Q Consensus 225 p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~------------------------v~~i~ 265 (406)
. +++ .++.++.+|.++++|.++++.+....... .+ -..++
T Consensus 309 ~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a 387 (668)
T 1kv9_A 309 I-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMS 387 (668)
T ss_dssp E-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCE
T ss_pred c-CCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcce
Confidence 2 233 67888999999999999998763221100 00 01256
Q ss_pred ecCCCCcEEEEE------------------------------------eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEE
Q 015484 266 FNPYNEWVLATA------------------------------------SSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309 (406)
Q Consensus 266 ~~~~~~~~l~~~------------------------------------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~ 309 (406)
++|+.. ++.+. ..+|.|..||+.+++. +-....+ .......
T Consensus 388 ~dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-~W~~~~~-~~~~~~~ 464 (668)
T 1kv9_A 388 FNPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-AWKVPYP-THWNGGT 464 (668)
T ss_dssp EETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-EEEEEES-SSCCCCE
T ss_pred ECCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-EEEccCC-CCCcCce
Confidence 777766 43331 1237799999988764 3333222 2222223
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+...+. +++.++.||.++.||..+
T Consensus 465 ~~t~gg-~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 465 LSTAGN-LVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEETTT-EEEEECTTSEEEEEETTT
T ss_pred eEeCCC-EEEEECCcccchhhhhhc
Confidence 333454 688889999999999987
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.042 Score=48.38 Aligned_cols=236 Identities=7% Similarity=0.013 Sum_probs=117.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..|.|.| + ..+++ +..|.|+. ..+... .+........+...+..+.+.+++. .++.+ .+|.| |
T Consensus 79 ~~~~~~i~~~~-~-~~~~~-g~~g~i~~--S~DgG~----tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~ 145 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIV-GEPPIMLH--TTDGGQ----SWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAI--Y 145 (327)
T ss_dssp CCEEEEEEEET-T-EEEEE-EETTEEEE--ESSTTS----SCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCE--E
T ss_pred CccEEEEEecC-C-eEEEE-ECCCeEEE--ECCCCC----CceECccccCCCCCeEEEEEECCCC-EEEEe-CCccE--E
Confidence 34688889886 3 44554 45664443 222111 1211111112234567788776555 55555 45644 3
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE-EECCCCcccccc-cccCCCeeEEEecCCCCc
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI-WDLRTNQTQQRV-KAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~ 272 (406)
....+. .....+. ......+..+.+.| ++.+++++ .+|.+.. .|- .+..-..+ ......+..+.+.+++.
T Consensus 146 ~S~DgG--~tW~~~~--~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~- 217 (327)
T 2xbg_A 146 RTKDSG--KNWQALV--QEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR- 217 (327)
T ss_dssp EESSTT--SSEEEEE--CSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-
T ss_pred EEcCCC--CCCEEee--cCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-
Confidence 222221 1222211 23345688899988 56666555 4455444 332 12222222 22456788899999887
Q ss_pred EEEEEeCCCcEEEEeCC---CCCCCcEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCC
Q 015484 273 VLATASSDTTVALFDMR---KMTVPLHIL-SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~---~~~~~~~~~-~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (406)
++ .++.+|.+++.+.. +... +..- ..+...+..+.+.+++. ++++ +.+|.|. +.... +..-..
T Consensus 218 ~~-~~~~~G~~~~s~~D~G~tW~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~g~i~-~S~Dg-G~tW~~------- 284 (327)
T 2xbg_A 218 LW-MIVNGGKIAFSDPDNSENWGE-LLSPLRRNSVGFLDLAYRTPNE-VWLA-GGAGALL-CSQDG-GQTWQQ------- 284 (327)
T ss_dssp EE-EEETTTEEEEEETTEEEEECC-CBCTTSSCCSCEEEEEESSSSC-EEEE-ESTTCEE-EESST-TSSCEE-------
T ss_pred EE-EEeCCceEEEecCCCCCeeEe-ccCCcccCCcceEEEEecCCCE-EEEE-eCCCeEE-EeCCC-CcccEE-------
Confidence 44 44567877776421 1111 1110 01234588999998764 4544 4577663 33222 111110
Q ss_pred CeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 349 PELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 349 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+.........+.++.|.+++. ++.++.+|.|.-++-
T Consensus 285 ---~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 ---DVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT 320 (327)
T ss_dssp ---CGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred ---cCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence 000001234577888875554 556677897766543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0039 Score=57.93 Aligned_cols=172 Identities=9% Similarity=0.119 Sum_probs=100.4
Q ss_pred cEEEEEeeCC-CCCEEEEEecCCcEEEEECCCCcccccccc---cCCCeeEEEe-------cCCCCcEEEEEeCCC----
Q 015484 217 VVEDVSWHLK-NENLFGSAGDDCQLMIWDLRTNQTQQRVKA---HEKEVNYLSF-------NPYNEWVLATASSDT---- 281 (406)
Q Consensus 217 ~i~~i~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~i~~-------~~~~~~~l~~~~~dg---- 281 (406)
....|+|+|. +++++++-...+.|++.|+..+........ .......++| ++++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678899983 566776666567899999887665433322 1235789999 999984444443332
Q ss_pred --cEEEEeCCC-CCCC----cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC-------CCCcccccccccCC
Q 015484 282 --TVALFDMRK-MTVP----LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN-------RIGDEQLELDAEDG 347 (406)
Q Consensus 282 --~i~vwd~~~-~~~~----~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~ 347 (406)
.|.+++... +... ...+.. -.....++.+|++..++++-..++.|..+|+. .............+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266776433 1111 022221 12346778899776777788888999999986 21110000000000
Q ss_pred CCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 348 PPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 348 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
....++.. +.......++|+|+|.+++++-.....|+.+++.
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 01122222 2234568999999999556666667788886553
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.018 Score=51.12 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=107.1
Q ss_pred CeeEEEecCCCCCeEEEec-------------CCCeEEEEeCCCccCC-ceeeeeee-eeccCccEEEEEeeCC--CC-C
Q 015484 168 EGYGLSWSPFKEGYLVSGS-------------HDNKICLWDVSALAQD-KVIDAMHV-YEAHESVVEDVSWHLK--NE-N 229 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~-------------~dg~i~iwd~~~~~~~-~~~~~~~~-~~~~~~~i~~i~~~p~--~~-~ 229 (406)
..-.+...|+|. +++++ .+|.|.++|+.+.... ..+..... +....-....+.+.++ +. .
T Consensus 51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 344666677553 44443 6899999998753211 11211100 1112235566666542 22 3
Q ss_pred EEEEEec--CCcEEEEECCCCcc----cccccc-cCCCeeEEEecCCCCcEEEEEe-----------------CCCcEEE
Q 015484 230 LFGSAGD--DCQLMIWDLRTNQT----QQRVKA-HEKEVNYLSFNPYNEWVLATAS-----------------SDTTVAL 285 (406)
Q Consensus 230 ~l~~~~~--dg~i~i~d~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~~~~-----------------~dg~i~v 285 (406)
++++-.. +..|.+|++..... +..+.+ .-...+.+.+.++|. ++++.. ..|.|.-
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4444333 46777877765322 222221 224578899999987 555543 1245555
Q ss_pred EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 286 wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
+|.. + +..+...-...+.|+|+|+++.+.++-+..+.|..|++...+.... .+ .+.. ....-.+
T Consensus 208 ~d~~--~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--------~~-~~~~---~g~PDGi 271 (355)
T 3sre_A 208 YSPN--D--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--------LR-VLSF---DTLVDNI 271 (355)
T ss_dssp ECTT--C--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--------EE-EEEC---SSEEEEE
T ss_pred EECC--e--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--------CE-EEeC---CCCCceE
Confidence 5542 2 3333333346799999999987777777889999999864221110 01 1111 3456788
Q ss_pred EeCC-CCCcEEEEEeCC
Q 015484 366 SWNK-NDPWVISSVADD 381 (406)
Q Consensus 366 ~~s~-~~~~~l~s~~~d 381 (406)
+..+ +|. +.+++..+
T Consensus 272 ~vD~e~G~-lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGD-LWVGCHPN 287 (355)
T ss_dssp EECTTTCC-EEEEEESC
T ss_pred EEeCCCCc-EEEEecCC
Confidence 9998 588 56655433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.012 Score=56.28 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=63.7
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccC-------------CCe--------------------------eEEEecCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-------------KEV--------------------------NYLSFNPY 269 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~i~~~~~ 269 (406)
.+++.++.+|.++++|.++++.+..+.... .++ ..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 467778899999999999998765442111 111 23567777
Q ss_pred CCcEEEEEe-------------------------------------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcC
Q 015484 270 NEWVLATAS-------------------------------------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDP 312 (406)
Q Consensus 270 ~~~~l~~~~-------------------------------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p 312 (406)
.. ++.+.. .+|.|..||+.+++. +-.+.. ...+.......
T Consensus 397 ~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t 473 (571)
T 2ad6_A 397 SR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYT 473 (571)
T ss_dssp TT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEE
T ss_pred CC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecC-CCCccceeEEE
Confidence 76 444432 347899999988764 333322 12222222222
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 015484 313 NHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+. +++.++.||.|+.+|..+
T Consensus 474 ~gg-~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 474 KGG-LVWYATLDGYLKALDNKD 494 (571)
T ss_dssp TTT-EEEEECTTSEEEEEETTT
T ss_pred CCC-EEEEEcCCCeEEEEECCC
Confidence 343 577789999999999987
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.086 Score=50.86 Aligned_cols=161 Identities=8% Similarity=0.072 Sum_probs=103.7
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
..+.+|+|.+.+..++++-...+.|..++++..... ......-.....+++.+.+++++.+-+..+.|.+.++.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~------~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~ 422 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ------FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN 422 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE------EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence 457799999866634555556788999988753221 11122224567888887677888887788899999987
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASS-DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg 325 (406)
.......+...-.....|+++|....++.+-.. .+.|...++..... .......-...+.|++++.++.+.++=+..+
T Consensus 423 G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 423 GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp SCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 543222222234567899999975535454322 35677777754332 2233333457899999997776666666678
Q ss_pred cEEEEeCCC
Q 015484 326 RLMVWDLNR 334 (406)
Q Consensus 326 ~i~iwd~~~ 334 (406)
.|..+++..
T Consensus 502 ~I~~~~~dG 510 (619)
T 3s94_A 502 KIEVMNTDG 510 (619)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 899898865
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.048 Score=48.43 Aligned_cols=201 Identities=12% Similarity=0.157 Sum_probs=112.3
Q ss_pred ceeEEEEcCCCCcEEEEE------------eCCCeEEEEeCCCccccccCCCCCceeeeC-----CCCCeeEEEecC--C
Q 015484 117 EVNRARCMPQKPNLVGTK------------TSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-----HDKEGYGLSWSP--F 177 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~--~ 177 (406)
..-.+...|+| ..++++ ..+|.|.++|..+..... . ...+.+ ..-....+.+.+ +
T Consensus 51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~----~-~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV----S-ELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCE----E-ECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce----E-EEEccCCCCCcCceeeeeeEEEECCC
Confidence 45566667766 333333 268999999987532111 1 112222 123556777765 3
Q ss_pred CCCeEEEe-cC--CCeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEe-----------------c
Q 015484 178 KEGYLVSG-SH--DNKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAG-----------------D 236 (406)
Q Consensus 178 ~~~~l~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~-----------------~ 236 (406)
+..+|+.+ .. +.+|.+|+++.... ....+..+.+. -...+++.+.+ ++.++++.. .
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCC
Confidence 43244444 22 56788888766432 22233334332 24678999998 566665543 1
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcC-C
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDP-N 313 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p-~ 313 (406)
.|.|..+|. ++ +..+...-..-+.++|+|+++.++++-+..+.|..|++...... ...+ ...+..-.+++.+ +
T Consensus 202 ~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 202 WSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT 277 (355)
T ss_dssp CEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT
T ss_pred ccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC
Confidence 245666654 32 22232233557899999999866666667789999998743221 1223 2245678889998 4
Q ss_pred CCCEEEEEeCC-CcEEEEe
Q 015484 314 HETVLASSADD-RRLMVWD 331 (406)
Q Consensus 314 ~~~~l~s~~~d-g~i~iwd 331 (406)
|. +.+++..+ +.|..|+
T Consensus 278 G~-lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 278 GD-LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CC-EEEEEESCHHHHHSCC
T ss_pred Cc-EEEEecCCceEEEEEC
Confidence 86 55555433 3444443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.017 Score=55.34 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 280 DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 280 dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+|.|.-||+.+++. +-..... .++..-.....+. +++.++.||.++.||.++
T Consensus 465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTT
T ss_pred cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCC
Confidence 57899999988764 3222211 1111111111243 677799999999999987
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.045 Score=48.13 Aligned_cols=189 Identities=8% Similarity=0.198 Sum_probs=113.8
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCC---EEEE-Eec--CCcEEEEECC--CCc
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NEN---LFGS-AGD--DCQLMIWDLR--TNQ 249 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~---~l~~-~~~--dg~i~i~d~~--~~~ 249 (406)
+++.....+-+.+||+ .++. + +.+. .+.++.+..-|. ++. ++++ ... +++|.+|++. ++.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~---l---~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKM---L---HSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCE---E---EEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred EEEEEcCCCCEEEEcC-CCcE---E---EEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 6666677889999999 4432 2 2222 245666665541 111 2233 333 5789999773 332
Q ss_pred ccccccc------cC-CCeeEEEe--cCC-CCcEEEEEeCCCcEEEEeCCCC------CCCcEEecCCCCCeEEEEEcCC
Q 015484 250 TQQRVKA------HE-KEVNYLSF--NPY-NEWVLATASSDTTVALFDMRKM------TVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 250 ~~~~~~~------~~-~~v~~i~~--~~~-~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
+..+.. .. ..+..+++ +|. +..++++...+|.+..|++... ...+..+.. .+.+-.|...+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~ 190 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE 190 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence 333311 11 55666777 774 4456888888899999988431 122455554 457888999987
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec-CC-CCCeeeEEe--CCCCC-cEEEEEeCCCcEEEEe
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG-GH-KAKISDFSW--NKNDP-WVISSVADDNTVQVWQ 388 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~~~~--s~~~~-~~l~s~~~dg~i~iw~ 388 (406)
.. .|..+-++.-|..++.+.... ....++.... ++ ...+..|+. .++++ |+++|+-.++.+.+|+
T Consensus 191 ~g-~Lyv~eEd~GIw~~da~p~~~---------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 191 YG-RLYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp TT-EEEEEETTTEEEEEECSTTSC---------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CC-eEEEecccceEEEEeCCcCCC---------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 76 488888886665555443110 0123343331 22 236788887 45555 7788876788999999
Q ss_pred CC
Q 015484 389 MT 390 (406)
Q Consensus 389 ~~ 390 (406)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 96
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.08 Score=47.16 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=128.7
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee---eeCCCCCeeEEEecCC---CC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR---LKGHDKEGYGLSWSPF---KE 179 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~~~~---~~ 179 (406)
+++.....--.....|+|.|++ .+++ +..+|.|++++... . . .+.. ..........|+++|+ +.
T Consensus 19 ~~~~~va~~l~~P~~ia~~pdG-~l~V-~e~~g~I~~~d~~G-~-~------~~~~~~v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 19 FKISEVASDLEVPWSIAPLGGG-RYLV-TERPGRLVLISPSG-K-K------LVASFDVANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp EEEEEEECSCSCEEEEEEEETT-EEEE-EETTTEEEEECSSC-E-E------EEEECCCCCSTTCSEEEEEECTTTTTSC
T ss_pred eEEEEEeCCCCCCeEEEEcCCC-eEEE-EeCCCEEEEEeCCC-c-e------EeeccceeecCCCceeeEEeCCCCCcCC
Confidence 4444444444678899999998 4444 45669999997332 1 1 1111 1122346789999997 44
Q ss_pred CeEEEecC----C----CeEEEEeCCCccCC-ceeeee-eeeec-cCccEEEEEeeCCCCCEEEEEec------------
Q 015484 180 GYLVSGSH----D----NKICLWDVSALAQD-KVIDAM-HVYEA-HESVVEDVSWHLKNENLFGSAGD------------ 236 (406)
Q Consensus 180 ~~l~s~~~----d----g~i~iwd~~~~~~~-~~~~~~-~~~~~-~~~~i~~i~~~p~~~~~l~~~~~------------ 236 (406)
.|..+.. + +.|..|+....... ...+.+ ..+.. .......++|.| ++.++++.+.
T Consensus 89 -~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 89 -WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp -EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTC
T ss_pred -EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCC
Confidence 4444332 3 56777776543110 011111 11111 112346789999 5677766443
Q ss_pred -CCcEEEEECCCCc-------ccccc-cccCCCeeEEEecC-CCCcEEEEEeCCC---cEEEEeCCC-------------
Q 015484 237 -DCQLMIWDLRTNQ-------TQQRV-KAHEKEVNYLSFNP-YNEWVLATASSDT---TVALFDMRK------------- 290 (406)
Q Consensus 237 -dg~i~i~d~~~~~-------~~~~~-~~~~~~v~~i~~~~-~~~~~l~~~~~dg---~i~vwd~~~------------- 290 (406)
.|.|.-++....- ....+ .++ .....++|+| .+. ++++-.... .|.+.....
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 2456666654220 01111 122 2346799999 565 544433222 244332111
Q ss_pred --CCCCcEEecCCCCCeEEEEEc-------CCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 291 --MTVPLHILSSHTEEVFQVEWD-------PNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 291 --~~~~~~~~~~h~~~v~~i~~~-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...|+..+.........++|. .++ .++++.-..+.|...++...+... .....+.+....
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~----------~~~~~~~~~~~r 313 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVR----------KISTFFKNVFGR 313 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEE----------EEEEECTTTSCC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCccc----------ceeeeccCCCCC
Confidence 012344442223467888884 345 356666667788888776421110 001112222456
Q ss_pred eeeEEeCCCCCcEEEEEe
Q 015484 362 ISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~ 379 (406)
+.++++.|+|. ++++..
T Consensus 314 p~~v~~~pDG~-lyv~~~ 330 (354)
T 3a9g_A 314 LRDVVIDDDGG-ILISTS 330 (354)
T ss_dssp EEEEEECTTSC-EEEEEC
T ss_pred eeEEEECCCCc-EEEEEe
Confidence 89999999997 566653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.087 Score=50.53 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=84.2
Q ss_pred EEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEE-EEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccc
Q 015484 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED-VSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRV 254 (406)
Q Consensus 182 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~ 254 (406)
|+.++.|+.|..+|..+++......... . .....+.+ -... ++. +++++ .+|.|+.+|.++++.+-.+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~-~-~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSD-I-KVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-G-GGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCC-C-CccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 8888899999999998886532221100 0 00001111 1112 344 44444 3799999999999876554
Q ss_pred cccCCC-------------------------------------e-eEEEecCCCCcEEEEEeCC----------------
Q 015484 255 KAHEKE-------------------------------------V-NYLSFNPYNEWVLATASSD---------------- 280 (406)
Q Consensus 255 ~~~~~~-------------------------------------v-~~i~~~~~~~~~l~~~~~d---------------- 280 (406)
...... + ..+++.+... ++..+..+
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCcccc
Confidence 221100 0 1345566666 66666654
Q ss_pred CcEEEEeCCCCCCCcEEecC--CC--------CCeEEEEEc-CCCC--CEEEEEeCCCcEEEEeCCCCC
Q 015484 281 TTVALFDMRKMTVPLHILSS--HT--------EEVFQVEWD-PNHE--TVLASSADDRRLMVWDLNRIG 336 (406)
Q Consensus 281 g~i~vwd~~~~~~~~~~~~~--h~--------~~v~~i~~~-p~~~--~~l~s~~~dg~i~iwd~~~~~ 336 (406)
+.|..+|.++++. +-.+.. |. .++. +... .+++ .+++.++.+|.+.++|..+..
T Consensus 278 ~sv~Ald~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 278 MTIFGRDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEEeCCCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 3788999988764 333222 21 1222 2222 4552 367788899999999998754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.069 Score=46.97 Aligned_cols=191 Identities=11% Similarity=0.099 Sum_probs=112.5
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC----CCC--e-EEEecC--CCeEEEEeCCCc
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF----KEG--Y-LVSGSH--DNKICLWDVSAL 199 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~--~-l~s~~~--dg~i~iwd~~~~ 199 (406)
.+++.....+-+.+||+... .+..+.. +.++.+..-|. ++. + +++.-. +++|++|++...
T Consensus 41 s~ii~t~k~~gL~Vydl~G~---------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGK---------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (355)
T ss_dssp CEEEEEETTTEEEEEETTSC---------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEcCCCc---------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC
Confidence 34555566778999999542 2333432 55677666552 211 2 233333 579999977422
Q ss_pred cCCceeeeeee----eeccCccEEEEEe--eCCCCC-EEEEEecCCcEEEEECC-------CCcccccccccCCCeeEEE
Q 015484 200 AQDKVIDAMHV----YEAHESVVEDVSW--HLKNEN-LFGSAGDDCQLMIWDLR-------TNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 200 ~~~~~~~~~~~----~~~~~~~i~~i~~--~p~~~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~i~ 265 (406)
.. .+..+.. +...-..+..+|+ +|..+. ++++...+|.+..|++. +.+.+.++.. .+.+-.+.
T Consensus 110 ~~--~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcv 186 (355)
T 3amr_A 110 NG--TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMA 186 (355)
T ss_dssp TC--CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEE
T ss_pred CC--ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEE
Confidence 11 1221111 0111145667777 664454 56777888999999883 2344555543 45677888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCC--C--CcEEec-CC-CCCeEEEEE--cCCCC-CEEEEEeCCCcEEEEeCCC
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMT--V--PLHILS-SH-TEEVFQVEW--DPNHE-TVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~--~--~~~~~~-~h-~~~v~~i~~--~p~~~-~~l~s~~~dg~i~iwd~~~ 334 (406)
..+... .|..+-++..|..||.+-.. . .+..+. ++ ...+..|++ .++++ ++|+++-.+++..+||...
T Consensus 187 vDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 187 ADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 888777 78888888777777754211 1 132221 22 236888888 45555 5666665788999999963
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.048 Score=49.12 Aligned_cols=145 Identities=10% Similarity=0.198 Sum_probs=91.7
Q ss_pred cCCcEEEEECCCCccccccccc----CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---C------Cc--EEecC
Q 015484 236 DDCQLMIWDLRTNQTQQRVKAH----EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT---V------PL--HILSS 300 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~------~~--~~~~~ 300 (406)
.++.||..++......+.+... -..+..+..+|+|. +||..+ +..|.|..+..+. . ++ ..+..
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3478888888754444444322 23678899999999 777765 4579998887322 1 01 12221
Q ss_pred ------CCCCeEEEEEcCCCCC--EEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 301 ------HTEEVFQVEWDPNHET--VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 301 ------h~~~v~~i~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
...+|..+.|+|-+.. .|++-..|+.|++||+........... . ....+........|.+++|.+++-
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k-~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K-PNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C-CCSEEESCSSCCCEEEEEECTTSS
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c-cccccCCCcccceEEEEEEcCCCc
Confidence 2568999999997543 688999999999999987332221111 1 111234444557799999999654
Q ss_pred cEEEEEe--CCCcEEEE
Q 015484 373 WVISSVA--DDNTVQVW 387 (406)
Q Consensus 373 ~~l~s~~--~dg~i~iw 387 (406)
.|...+ ..|.|+-.
T Consensus 193 -TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 -TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -CEEEEECTTSCEEEEE
T ss_pred -EEEEEecCCCCCEEEE
Confidence 455534 66776543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.25 E-value=0.2 Score=51.96 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=92.9
Q ss_pred CeeEEE---ecCCCCCeEEEec----------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 168 EGYGLS---WSPFKEGYLVSGS----------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 168 ~v~~l~---~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
.+.+++ |..+...+|+.|. ..|.|.+|++.. ..++.+... ..+++|++++-- +++++++.
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv~~~-~v~g~v~al~~~--~g~Lla~i 902 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTVAEK-EVKGAVYSMVEF--NGKLLASI 902 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEEEEE-EESSCEEEEEEE--TTEEEEEE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEEEEE-EcCCcCEEEeee--CCEEEEEc
Confidence 344444 3333334888775 358899999873 233333332 246788888744 45555443
Q ss_pred ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcC
Q 015484 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDP 312 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p 312 (406)
...|++|++...+.+..-..+-..+..+.....++ ++++|..-..|.++..+.....+..+ ..+...++++.+-.
T Consensus 903 --g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 903 --NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD 979 (1158)
T ss_dssp --TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE
T ss_pred --CCEEEEEECCCCceEEEEeeccccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc
Confidence 46899999986654331111111133223323455 78888887777776554333223322 34556788998876
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 015484 313 NHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 313 ~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
++ .++.+..+|.+.+.....
T Consensus 980 ~~--t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 980 DD--NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TT--EEEEEETTSEEEEEEECT
T ss_pred cC--cEEEEcCCCcEEEEecCC
Confidence 55 377899999999998765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.022 Score=49.34 Aligned_cols=235 Identities=10% Similarity=0.057 Sum_probs=110.1
Q ss_pred cEEEEEe-CC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCC
Q 015484 129 NLVGTKT-SS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVS 197 (406)
Q Consensus 129 ~~l~~~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~ 197 (406)
.+++.|+ .+ ..+.+||..+..-.. ...+........++.. ++. +++.|+.+ ..+.+||+.
T Consensus 16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSF------LPSITRKRRYVASVSL--HDR-IYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp EEEEECCEETTTEECCCEEEEETTTTEEEE------CCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETT
T ss_pred EEEEEeCccCCCcceeEEEEEcCCCCeEEe------CCCCChhhccccEEEE--CCE-EEEEcCCCCCccCceEEEEECC
Confidence 4666666 32 368889987643211 1111111111112222 344 77777755 468899987
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCC
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~ 270 (406)
+.... ....+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++
T Consensus 87 ~~~~~-~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 160 (301)
T 2vpj_A 87 ADEDG-VWYSVAPMNVRRGLA-GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG 160 (301)
T ss_dssp CCTTC-CCEEECCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT
T ss_pred CCCCC-eeEECCCCCCCccce-eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC
Confidence 75410 011111111111111 12222 46777777754 358889987765322 11111111122222 34
Q ss_pred CcEEEEEeCC-----CcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCccc
Q 015484 271 EWVLATASSD-----TTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGDEQ 339 (406)
Q Consensus 271 ~~~l~~~~~d-----g~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 339 (406)
. +++.|+.+ ..+.+||+.+..-. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-..
T Consensus 161 ~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 161 V-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp E-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred E-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 4 77777654 36889998764310 1111111111222232 33 467777654 468888887522110
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCCC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRDD 397 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~ 397 (406)
+............+.+ ++. +++.|+.+ ..+.+||+.++.+...
T Consensus 237 ------------~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 237 ------------VTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp ------------ECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred ------------CCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 0000000111112222 455 67777765 4578899988776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.03 Score=48.55 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=91.4
Q ss_pred CCCeEEEecCC-----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----cEEEEECCC
Q 015484 178 KEGYLVSGSHD-----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----QLMIWDLRT 247 (406)
Q Consensus 178 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----~i~i~d~~~ 247 (406)
+. +++.|+.+ ..+.+||..+.. ...+.......... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 62 ~~-lyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 62 GL-VFAVGGFNGSLRVRTVDSYDPVKDQ----WTSVANMRDRRSTL-GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TE-EEEESCBCSSSBCCCEEEEETTTTE----EEEECCCSSCCBSC-EEEEE--TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CE-EEEEeCcCCCccccceEEECCCCCc----eeeCCCCCccccce-EEEEE--CCEEEEEcCCCCCccCceEEEEeCCC
Confidence 44 77777754 357888887643 21111111111111 12222 467777887654 477889877
Q ss_pred Ccccc--cccccCCCeeEEEecCCCCcEEEEEeCC-------CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCE
Q 015484 248 NQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSD-------TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETV 317 (406)
Q Consensus 248 ~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~ 317 (406)
.+-.. .+.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+
T Consensus 134 ~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i 207 (302)
T 2xn4_A 134 NEWFHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LL 207 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EE
T ss_pred CeEeecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EE
Confidence 64321 12111111122222 344 66666542 3588999876431 01111111111222222 33 46
Q ss_pred EEEEeCC-----CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCC-----cEEEE
Q 015484 318 LASSADD-----RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDN-----TVQVW 387 (406)
Q Consensus 318 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg-----~i~iw 387 (406)
++.|+.+ ..+.+||+.+..-... ...+.. ...| ..+.+ ++. +++.|+.++ .+.+|
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~~~~----r~~~----~~~~~--~~~-i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQV----ADMNMC----RRNA----GVCAV--NGL-LYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEE----CCCSSC----CBSC----EEEEE--TTE-EEEECCBCSSSBCCCEEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeC----CCCCCc----cccC----eEEEE--CCE-EEEECCcCCCcccccEEEE
Confidence 7777654 3688888865221100 000000 0111 11222 444 677777653 48999
Q ss_pred eCCCcccCCC
Q 015484 388 QMTDSIYRDD 397 (406)
Q Consensus 388 ~~~~~~~~~~ 397 (406)
|+.++.+...
T Consensus 273 d~~~~~W~~~ 282 (302)
T 2xn4_A 273 NPTTDKWTVV 282 (302)
T ss_dssp ETTTTEEEEC
T ss_pred cCCCCeEEEC
Confidence 9998876543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.036 Score=48.15 Aligned_cols=229 Identities=7% Similarity=0.019 Sum_probs=110.5
Q ss_pred cEEEEEeC--CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC----CeEEEEeCCCccCC
Q 015484 129 NLVGTKTS--SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD----NKICLWDVSALAQD 202 (406)
Q Consensus 129 ~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~ 202 (406)
.+++.|+. ...+.+||.....-.. ...+........++.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~d~~~~~W- 82 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD------IRCPFEKRRDAACVFW--DNV-VYILGGSQLFPIKRMDCYNVVKDSW- 82 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE------CCCCSCCCBSCEEEEE--TTE-EEEECCBSSSBCCEEEEEETTTTEE-
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec------CCCCCcccceeEEEEE--CCE-EEEEeCCCCCCcceEEEEeCCCCeE-
Confidence 56666664 3568889988743221 1111111111122222 344 77777754 6788888877432
Q ss_pred ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEE
Q 015484 203 KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l 274 (406)
..+........... ++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++. ++
T Consensus 83 ---~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iy 153 (306)
T 3ii7_A 83 ---YSKLGPPTPRDSLA-ACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGL-IY 153 (306)
T ss_dssp ---EEEECCSSCCBSCE-EEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EE
T ss_pred ---EECCCCCcccccee-EEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCE-EE
Confidence 11111111111111 2222 56777787765 458899988765321 12111111122222 344 66
Q ss_pred EEEeC---------CCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 015484 275 ATASS---------DTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGD 337 (406)
Q Consensus 275 ~~~~~---------dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~ 337 (406)
+.|+. -..+.+||+.+.. -..+. .....-..+.+ ++ .+++.|+.+ ..+.+||+.+..-
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 66653 3458899987643 11111 11111122222 34 367776653 3578888875221
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRD 396 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~ 396 (406)
... .. ..........+.+ ++. +++.|+.+ ..+.+||+.+..+..
T Consensus 229 ~~~----~~--------~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 229 KMV----SP--------MPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp EEC----CC--------CSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred EEC----CC--------CCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 100 00 0001111122222 444 77777754 568999998887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.056 Score=47.18 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=85.2
Q ss_pred EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecC----C-------CeEEEEeCC
Q 015484 130 LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSH----D-------NKICLWDVS 197 (406)
Q Consensus 130 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~----d-------g~i~iwd~~ 197 (406)
+++.|+ ..+.+||..+.. +.. ..+.... ..-.+++. .++. +++.|+. + ..+.+||..
T Consensus 7 l~~~GG--~~~~~yd~~~~~------W~~-~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~ 75 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE------CYC-ASLSSQVPKNHVSLVT-KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHL 75 (315)
T ss_dssp EEEEET--TEEEEEETTTTE------EEE-EECCCCSCSSEEEEEC-TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred EEEEcC--CceEEECCCCCe------Eec-CCCCCCCCccceEEEE-ECCE-EEEEcCcccCCCCCccccccceEEecCC
Confidence 455665 469999998743 211 1121111 11222332 3444 7777763 1 126778877
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--------CcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD--------CQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
+..- ..+......... .+++.. ++.+++.|+.+ ..+.+||+.+.+-. ..+......-..+.
T Consensus 76 ~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 146 (315)
T 4asc_A 76 DSEW----LGMPPLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-- 146 (315)
T ss_dssp TTEE----EECCCBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--
T ss_pred CCeE----EECCCCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--
Confidence 6431 111111111111 112222 56777777743 45889998876432 22221111112222
Q ss_pred CCCCcEEEEEeC-C-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 268 PYNEWVLATASS-D-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~-d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
-++. +++.|+. + ..+.+||+.+..- .+..+......-..+.+ ++ .+++.|+.++ .+.+||+.+
T Consensus 147 ~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence 2344 7777765 2 3689999876421 01111111111222222 34 4677777554 477888865
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.2 Score=44.51 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=124.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC---CCCeEEEe-cC---
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF---KEGYLVSG-SH--- 187 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~-~~--- 187 (406)
-.....|+|.|++..+++ +...|.|++++............ + ............|+++|+ +. .|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~-~-~v~~~g~~g~~gia~~pdf~~~g-~lYv~~~~~~~ 92 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGV-P-DVWAHGQGGLLDVVLAPDFAQSR-RIWLSYSEVGD 92 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSC-C-CCCCSTTCSEEEEEECTTHHHHC-EEEEEEEEECS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCC-c-ccccCCCCCceeEEECCCCCCCC-EEEEEEeCCCC
Confidence 356789999999942554 45679999998543211000000 0 011122345689999995 44 44443 22
Q ss_pred ----CCeEEEEeCCCccCC-ceeeee-eeee---ccCccEEEEEeeCCCCCEEEEEecC-------------CcEEEEEC
Q 015484 188 ----DNKICLWDVSALAQD-KVIDAM-HVYE---AHESVVEDVSWHLKNENLFGSAGDD-------------CQLMIWDL 245 (406)
Q Consensus 188 ----dg~i~iwd~~~~~~~-~~~~~~-~~~~---~~~~~i~~i~~~p~~~~~l~~~~~d-------------g~i~i~d~ 245 (406)
...|..|++...... ...+.+ ..+. ........++|.| ++.++++.+.. |.|.-++.
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 235666666532110 011111 1111 1112246799999 56666665442 46777776
Q ss_pred CCCc------------ccccccccCCCeeEEEecC-CCCcEEEEEeC-CCcEEEEeCCCC--------------------
Q 015484 246 RTNQ------------TQQRVKAHEKEVNYLSFNP-YNEWVLATASS-DTTVALFDMRKM-------------------- 291 (406)
Q Consensus 246 ~~~~------------~~~~~~~~~~~v~~i~~~~-~~~~~l~~~~~-dg~i~vwd~~~~-------------------- 291 (406)
...- ....+...-.....++|+| .+. ++++-.. ++.=.|.-+..+
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 5321 1111211123467899999 555 4443221 211122211111
Q ss_pred ----------CCCcEEecCCCCCeEEEEEcC-------CCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 292 ----------TVPLHILSSHTEEVFQVEWDP-------NHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 292 ----------~~~~~~~~~h~~~v~~i~~~p-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
..|+..+.. ...+..+.|.. ++ .++++.-..+.|...++.. .... .....
T Consensus 251 ~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~-~~~~----------~~~~~ 317 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNG-DKVT----------EDGRI 317 (353)
T ss_dssp TCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEET-TEEE----------EEEEE
T ss_pred cccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCC-CeEe----------eeEEc
Confidence 122333332 34677888864 34 3566666677777777653 1100 00011
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeC
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQM 389 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~ 389 (406)
+......+.++++.|+|. ++++.. .+| +||.+
T Consensus 318 ~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 318 LTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKV 350 (353)
T ss_dssp SGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEE
T ss_pred ccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEE
Confidence 122234789999999998 555433 334 45554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.28 Score=44.26 Aligned_cols=145 Identities=13% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc---
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ--- 251 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~--- 251 (406)
.+|. .++.+ .++.||.-++..... .+.+..-. -.-..|..+..+| ++.++|..+. ..|.+..+..+...
T Consensus 30 ~n~t-~i~~a-~~n~iR~~~i~~~~~---Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 30 QNGT-RIVFI-QDNIIRWYNVLTDSL---YHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp TTTT-EEEEE-ETTEEEEEETTTCSS---CEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred cCCC-EEEEE-ECCEEEEEECCCCCc---ceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcc
Confidence 3444 45555 347888878775322 21111110 0112567799998 7888877654 57999888733211
Q ss_pred ---------ccccc------cCCCeeEEEecCCCCc--EEEEEeCCCcEEEEeCCC-CCCCcEEec---------CCCCC
Q 015484 252 ---------QRVKA------HEKEVNYLSFNPYNEW--VLATASSDTTVALFDMRK-MTVPLHILS---------SHTEE 304 (406)
Q Consensus 252 ---------~~~~~------~~~~v~~i~~~~~~~~--~l~~~~~dg~i~vwd~~~-~~~~~~~~~---------~h~~~ 304 (406)
+.+.. ...+|..+.|||.+.. .|++-..|+.|++||+.. ...|. .+. .....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 11111 2467999999997543 899999999999999986 23333 332 22256
Q ss_pred eEEEEEcCCCCCEEEEEe--CCCcEEE
Q 015484 305 VFQVEWDPNHETVLASSA--DDRRLMV 329 (406)
Q Consensus 305 v~~i~~~p~~~~~l~s~~--~dg~i~i 329 (406)
|.+++|.+++=+ |...+ ..|.|+-
T Consensus 182 v~S~~Fg~~~lT-LYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLT-LYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSC-EEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcE-EEEEecCCCCCEEE
Confidence 889999997654 44543 6777754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.12 Score=44.84 Aligned_cols=231 Identities=5% Similarity=0.000 Sum_probs=107.8
Q ss_pred cEEEEEeC----CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----C-----CeEEEEe
Q 015484 129 NLVGTKTS----SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH----D-----NKICLWD 195 (406)
Q Consensus 129 ~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----d-----g~i~iwd 195 (406)
.+++.|+. -..+.+||..+..-.. ...+...... .+++.. ++. +++.|+. + ..+.+||
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~-~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLR------LADLQVPRSG-LAGCVV-GGL-LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEE------CCCCSSCCBS-CEEEEE-TTE-EEEECCEEEETTEEEECCCEEEEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeE------CCCCCccccc-ceEEEE-CCE-EEEECCCcCCCCCCeecceEEEEC
Confidence 56666663 2358888887643221 1111111111 122222 344 6777765 2 4578888
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecC
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNP 268 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~ 268 (406)
+.+.. ...+............+. . ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+
T Consensus 97 ~~~~~----W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 167 (308)
T 1zgk_A 97 PMTNQ----WSPCAPMSVPRNRIGVGV-I--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-- 167 (308)
T ss_dssp TTTTE----EEECCCCSSCCBTCEEEE-E--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred CCCCe----EeECCCCCcCccccEEEE-E--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--
Confidence 87643 111111111111112222 2 46777777643 358889988764321 22211112222223
Q ss_pred CCCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 015484 269 YNEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNRIGD 337 (406)
Q Consensus 269 ~~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~ 337 (406)
++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-
T Consensus 168 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 344 77777654 3688999876431 01111111112222333 34 467777654 4588888875221
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCC-----CcEEEEeCCCcccCC
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD-----NTVQVWQMTDSIYRD 396 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~ 396 (406)
... . . ..........+.. ++. +++.|+.+ ..+.+||+.+..+..
T Consensus 244 ~~~--~--~--------~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 244 TFV--A--P--------MKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp EEC--C--C--------CSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEC--C--C--------CCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 100 0 0 0000011111222 344 67777644 458899998887654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.44 Score=41.73 Aligned_cols=237 Identities=9% Similarity=0.013 Sum_probs=118.2
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee-eeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+-...+.+|.|.+.+ ..+++ +..|.|.. ..... . .+..... .......+.+|.+.+ +. .++ ++..|.|
T Consensus 33 ~~~~~~~~v~~~~~~-~~~~~-G~~g~i~~-s~DgG-~----tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~-~g~~g~i 101 (327)
T 2xbg_A 33 PTTATILDMSFIDRH-HGWLV-GVNATLME-TRDGG-Q----TWEPRTLVLDHSDYRFNSVSFQG-NE-GWI-VGEPPIM 101 (327)
T ss_dssp SCSSCEEEEEESSSS-CEEEE-ETTTEEEE-ESSTT-S----SCEECCCCCSCCCCEEEEEEEET-TE-EEE-EEETTEE
T ss_pred CCCCcEEEEEECCCC-cEEEE-cCCCeEEE-eCCCC-C----CCeECCCCCCCCCccEEEEEecC-Ce-EEE-EECCCeE
Confidence 344678999988766 45664 45675532 22221 1 1211111 112345688999976 33 444 4556754
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-cccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~ 270 (406)
.. ..+.++ ....+.....+...+..+.+.+ ++.+++++ .+|.|.. ....++.-... ......+..+.+.|++
T Consensus 102 ~~-S~DgG~---tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 102 LH-TTDGGQ---SWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp EE-ESSTTS---SCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred EE-ECCCCC---CceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence 33 222222 2221111111234567777765 45555544 4565432 22334432222 2344578899999988
Q ss_pred CcEEEEEeCCCcEEE-EeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCC
Q 015484 271 EWVLATASSDTTVAL-FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPP 349 (406)
Q Consensus 271 ~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (406)
. +++++. .|.+.. .|-. +..-...-......+..+.+.+++. +..++.+|.+.+.+... +....... .+
T Consensus 175 ~-~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~-G~tW~~~~---~~- 244 (327)
T 2xbg_A 175 E-YVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDN-SENWGELL---SP- 244 (327)
T ss_dssp C-EEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTE-EEEECCCB---CT-
T ss_pred c-EEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCC-CCeeEecc---CC-
Confidence 7 666554 454443 3421 1110111223456789999999885 44556688877764221 11000000 00
Q ss_pred eeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcE
Q 015484 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384 (406)
Q Consensus 350 ~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i 384 (406)
. ..+...+.++.+.+++. +++++ .+|.|
T Consensus 245 ~-----~~~~~~~~~v~~~~~~~-~~~~g-~~g~i 272 (327)
T 2xbg_A 245 L-----RRNSVGFLDLAYRTPNE-VWLAG-GAGAL 272 (327)
T ss_dssp T-----SSCCSCEEEEEESSSSC-EEEEE-STTCE
T ss_pred c-----ccCCcceEEEEecCCCE-EEEEe-CCCeE
Confidence 0 01123478888988776 55554 46766
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.21 Score=43.56 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCCEEEEEecC-------CcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeC------CCcEEEEeCCCC
Q 015484 227 NENLFGSAGDD-------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASS------DTTVALFDMRKM 291 (406)
Q Consensus 227 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~------dg~i~vwd~~~~ 291 (406)
++.+++.|+.+ ..+.+||+.+.+-.. .+......- +++. .++. +++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCC
Confidence 56777787754 247888988764322 111111111 1222 2344 6666653 235899998764
Q ss_pred CC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 292 TV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 292 ~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
.- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+
T Consensus 186 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 186 DWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence 31 01111111111122222 33 467777643 3467888765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.63 Score=41.27 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=60.3
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEecC-----C
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGDD-----C 238 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d-----g 238 (406)
..-.+++|.|+|. ++++ ...|.|.+++ .+.. ..+..+............|+|+|+ ++.++++-... +
T Consensus 31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3457999999987 5554 5669999998 3221 111111111122356889999984 35566555433 5
Q ss_pred cEEEEECCCCcc-----c-cccc---ccCCCeeEEEecCCCCcEEEEE
Q 015484 239 QLMIWDLRTNQT-----Q-QRVK---AHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 239 ~i~i~d~~~~~~-----~-~~~~---~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
.|..++...... + ..+. ........++|.|+|. ++++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 688888764321 1 1122 1112346899999997 55553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.61 Score=41.11 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=124.7
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCcee----eeCCCCCeeEEEecCC---CCCeEEEe
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR----LKGHDKEGYGLSWSPF---KEGYLVSG 185 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~---~~~~l~s~ 185 (406)
.--...+.|+|.|++ .++++-...|.|++++....... ++.. ..........|+++|+ +. .|...
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~------~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~ 100 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKT------ELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAY 100 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE------EEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEE
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEe------eecccCceeecCCCCceeeEeccccccCC-EEEEE
Confidence 345678999999999 56666555899999976542211 1111 1123456789999985 33 44432
Q ss_pred ---cCCCeEEEEeCCCcc----CCceeee-eeeee-ccCccEEEEEeeCCCCCEEEEEec-------------CCcEEEE
Q 015484 186 ---SHDNKICLWDVSALA----QDKVIDA-MHVYE-AHESVVEDVSWHLKNENLFGSAGD-------------DCQLMIW 243 (406)
Q Consensus 186 ---~~dg~i~iwd~~~~~----~~~~~~~-~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~-------------dg~i~i~ 243 (406)
..++.|.-|.+.... .....+. +..+. ........|+|.| ++.++++.+. .|.|.-.
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 245567667665421 1001111 11111 1122346789999 5677777542 3455555
Q ss_pred ECCCCc-------ccccc-cccCCCeeEEEecCCCCcEEEEE-eCCCcEEEEeCCCC-----------------CCCcEE
Q 015484 244 DLRTNQ-------TQQRV-KAHEKEVNYLSFNPYNEWVLATA-SSDTTVALFDMRKM-----------------TVPLHI 297 (406)
Q Consensus 244 d~~~~~-------~~~~~-~~~~~~v~~i~~~~~~~~~l~~~-~~dg~i~vwd~~~~-----------------~~~~~~ 297 (406)
+....- ....+ .++. ....++|+|++. ++++- +.++.=.|--+..+ ..|+..
T Consensus 180 ~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 554220 00111 2332 346799999877 44432 22332222222211 123444
Q ss_pred ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEE
Q 015484 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377 (406)
Q Consensus 298 ~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s 377 (406)
+..+......++|.. + .++...-..+.|....+...+. . .+....+.+....+.+|+..|+|. ++++
T Consensus 258 ~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~-~---------~~~e~~l~~~~gR~~dv~~~pDG~-lyv~ 324 (347)
T 3das_A 258 WSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAA-A---------ADPQAFLEGEYGRLRTVAPAGGDK-LWLV 324 (347)
T ss_dssp ECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEE-S---------SCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred cCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCce-e---------cceEEeecCCCCCccEEEECCCCc-EEEE
Confidence 443334667888874 4 3565555556665555543110 0 011122233446799999999998 4444
Q ss_pred E
Q 015484 378 V 378 (406)
Q Consensus 378 ~ 378 (406)
.
T Consensus 325 t 325 (347)
T 3das_A 325 T 325 (347)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.6 Score=48.82 Aligned_cols=229 Identities=10% Similarity=0.178 Sum_probs=129.9
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
..|.|.|+.+.... ... .-..-+.-.+|..+ .|+-= ...++.|||+++....+.. . ....
T Consensus 48 ~~vvIidl~~~~~~-------~rr----pi~AdsAIMnP~~~-iiALr-ag~~lQiFnl~~k~klks~------~-~~e~ 107 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNP-------IRR----PISADSAIMNPASK-VIALK-AGKTLQIFNIEMKSKMKAH------T-MTDD 107 (1630)
T ss_pred ceEEEEECCCCCCc-------ccc----cccchhhccCCCcc-eEEEe-cCCeEEEeehHHhhhhccc------c-cCCC
Confidence 37888888874321 111 11112333566554 44444 3678999999875432221 1 2345
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCC-ccccccccc----CCCeeEEEecCCCCcEEEEEe------CCCcEEEE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-QTQQRVKAH----EKEVNYLSFNPYNEWVLATAS------SDTTVALF 286 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~~~~------~dg~i~vw 286 (406)
|.--.|- +.+.++-.+. ..|..|++... .+++.+..| ...|..-..+++.++++++|- -.|.+.+|
T Consensus 108 VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 108 VTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred ceEEEec--CCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 6666676 4666655553 57999999743 334444333 456777788899997777765 34788899
Q ss_pred eCCCCCCCcEEecCCCCCeEEEEEc--CCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 287 DMRKMTVPLHILSSHTEEVFQVEWD--PNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 287 d~~~~~~~~~~~~~h~~~v~~i~~~--p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
...... -+.+.+|.+.-..+... +....+++.+.. .+.+.|-++.........+ ......+.+......+-
T Consensus 185 S~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f--~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 185 SVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--PKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC--ccccccccCCcccccCc
Confidence 887533 34566666554444432 222223433322 3789999886531100000 00011111111222344
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...+..++... ++...+.-|.|+++|+.++..
T Consensus 261 pv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 261 PVAMQISEKHD-VVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEeccccC-EEEEEecCceEEEEecccchh
Confidence 55677777666 677778889999999999864
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.41 Score=38.98 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=76.6
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeecc--CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
.|+...+| +++.=.........-+...... +. =..+.+++|+| ++.+.++ .+|.+.-.+..+.....-+. ..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~ 79 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMG-RA 79 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHH-HC
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccc-cc
Confidence 67777777 6555444443321111111111 12 13677999999 7777766 77887777765433211111 12
Q ss_pred CC--------eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-c----EEe-cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 259 KE--------VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-L----HIL-SSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 259 ~~--------v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~----~~~-~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
.. -.++.|.|+|. +.++ .||.|+-++..+.... . ..+ ..-=..+..|.+.|+|. |.+.. |
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Lyav~-d 153 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LYAVH-G 153 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EEEEE-T
T ss_pred cEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce--EEEEe-C
Confidence 22 37889999998 5555 5698988875432211 0 011 11113679999999995 55555 8
Q ss_pred CcEE
Q 015484 325 RRLM 328 (406)
Q Consensus 325 g~i~ 328 (406)
+.+.
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 8854
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.31 Score=41.97 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=88.7
Q ss_pred cEEEEEeCC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEEeCCC
Q 015484 129 NLVGTKTSS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+.... .+.....+........++.. ++. +++.|+.+ ..+.+||+.+
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~---~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDG---VWYSVAPMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTC---CCEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCC---eeEECCCCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCC
Confidence 567777754 46889998774300 01111111111111112222 344 67777654 3588888876
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCcccc--cccccCCCeeEEEecCCCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~ 271 (406)
.. ...+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++.
T Consensus 138 ~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (301)
T 2vpj_A 138 DQ----WSMLGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDH 208 (301)
T ss_dssp TE----EEEEEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred Ce----EEECCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCE
Confidence 43 22222111111111 22222 56777777754 458899988764322 12111111222222 344
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 272 WVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 272 ~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
+++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+..
T Consensus 209 -i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 209 -IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp -EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTT
T ss_pred -EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCC
Confidence 77777754 4689999886431 01111111111222222 34 366677654 3467777765
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.79 Score=40.65 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC---CCCEEEEEec---C---
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK---NENLFGSAGD---D--- 237 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~---d--- 237 (406)
....+++|.|++. ++ .+..+|.|.+++. .+. ..+..+............|+++|+ ++.++++-+. +
T Consensus 29 ~~P~~ia~~pdG~-l~-V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YL-VTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EE-EEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EE-EEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 3457999999886 44 4556699999873 332 111111111122356889999985 4566555442 3
Q ss_pred -CcEEEEECCCCc--c-----c-cccc-ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC--
Q 015484 238 -CQLMIWDLRTNQ--T-----Q-QRVK-AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT-- 292 (406)
Q Consensus 238 -g~i~i~d~~~~~--~-----~-~~~~-~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~-- 292 (406)
..|..|+..... . + ..+. ........|+|.|+|. ++++.+. .|.|.-++....-
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 567777765431 1 1 1121 1122346799999998 5554332 2456666654310
Q ss_pred -----CCcEEecCCCCCeEEEEEcC-CCCCEEEEE
Q 015484 293 -----VPLHILSSHTEEVFQVEWDP-NHETVLASS 321 (406)
Q Consensus 293 -----~~~~~~~~h~~~v~~i~~~p-~~~~~l~s~ 321 (406)
.......++ .....++|+| ++. ++++-
T Consensus 183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~-l~v~d 215 (354)
T 3a9g_A 183 DNPFPNSPIWSYGH-RNPQGIDWHRASGV-MVATE 215 (354)
T ss_dssp TSSSTTCCEEEECC-SCCCEEEECTTTCC-EEEEE
T ss_pred CCCCCCCcEEEEcc-CCcceEEEeCCCCC-EEEEe
Confidence 001112233 2356899999 554 45443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.91 Score=41.11 Aligned_cols=234 Identities=11% Similarity=0.181 Sum_probs=139.0
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
+.-.+|.. .++|.-. ..++.|||++.. ..++.| ...|.-=.|-... .|+-.+ +..|.-|++.
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnle~K-----------~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~ 133 (494)
T 1bpo_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMK-----------SKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSME 133 (494)
T ss_dssp EEEECSSS-SCEEEEE-TTEEEEEETTTT-----------EEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESS
T ss_pred eeeeCCCC-cEEEEec-CCeEEEEchHHh-----------hhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEeccc
Confidence 34567777 5676665 678999999983 223333 3567677776544 455553 4689999997
Q ss_pred CccCCceeeeeeeeecc----CccEEEEEeeCCCCCEEE-EEe------cCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 198 ALAQDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFG-SAG------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.... +...+..| ...|..-..+++ .+.++ +|- -.|.+.+|..+.+. -+.+.+|......+..
T Consensus 134 ~~s~-----P~kvFdR~~~L~~~QIInY~~d~~-~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~ 206 (494)
T 1bpo_A 134 GESQ-----PVKMFDRHSSLAGCQIINYRTDAK-QKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM 206 (494)
T ss_dssp SSCC-----CEEEEECCGGGTTCEEEEEEECTT-SSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEEC
T ss_pred CCCC-----chhheecchhcccceEEEEEECCC-CCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEec
Confidence 6322 22333333 345666666763 44443 332 24678899977543 4555666555544444
Q ss_pred cCC--CCcEEEEEeCC---CcEEEEeCCCC---CCCc-----EEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 015484 267 NPY--NEWVLATASSD---TTVALFDMRKM---TVPL-----HILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVW 330 (406)
Q Consensus 267 ~~~--~~~~l~~~~~d---g~i~vwd~~~~---~~~~-----~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iw 330 (406)
.-+ ...+++.+... +.++|.++... ..+. ..+. ....-..++..++... ++..-+.-|.|.+|
T Consensus 207 ~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~ly 285 (494)
T 1bpo_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLY 285 (494)
T ss_dssp TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEE
Confidence 311 12244444442 68999998653 1111 1111 1234467788888876 78889999999999
Q ss_pred eCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 331 DLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
|+.+ ..+++..+-....|...+-+..... +++....|.|.--.+++.
T Consensus 286 DleT--------------gt~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 286 DLET--------------GTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp ETTT--------------CCEEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTT
T ss_pred eccc--------------ceeeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccc
Confidence 9998 4556665555566665555544443 445557777666555544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.32 Score=42.00 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred cEEEEEeCC----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC------CeEEEEeCCC
Q 015484 129 NLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD------NKICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+..-. ....+........++.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~------~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWY------SKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEE------EEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTT
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEE------ECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCC
Confidence 577777754 57888998774321 11111111111112222 344 67777765 4588889877
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec---------CCcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD---------DCQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
..- ..+........... ++.. ++.+++.|+. -..+.+||+.+.+-. ..+......-..+.+
T Consensus 128 ~~W----~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 199 (306)
T 3ii7_A 128 ESW----HTKPSMLTQRCSHG-MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV- 199 (306)
T ss_dssp TEE----EEECCCSSCCBSCE-EEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred Cce----EeCCCCcCCcceeE-EEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence 431 11111111111111 2222 4677777764 345889999876432 112111111122222
Q ss_pred CCCCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCC
Q 015484 268 PYNEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADD-----RRLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d-----g~i~iwd~~~ 334 (406)
++. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.+ ..+.+||+..
T Consensus 200 -~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 200 -KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp -TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred -CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence 344 77777653 3688999876421 01111111122233333 33 477777754 4577888765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.18 Score=43.58 Aligned_cols=184 Identities=11% Similarity=0.079 Sum_probs=87.0
Q ss_pred cEEEEEeCC-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC-----eEEEEeCCC
Q 015484 129 NLVGTKTSS-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN-----KICLWDVSA 198 (406)
Q Consensus 129 ~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 198 (406)
.+++.|+.+ ..+.+||..+..-.. ...+........++.+ ++. +++.|+.++ .+.+||+.+
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTS------VANMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEE------ECCCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTT
T ss_pred EEEEEeCcCCCccccceEEECCCCCceee------CCCCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCC
Confidence 577777754 358888887643211 1111111111112222 344 667776553 477888776
Q ss_pred ccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-------CcEEEEECCCCcccc--cccccCCCeeEEEecCC
Q 015484 199 LAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-------CQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPY 269 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~ 269 (406)
.. ...+.......... +++.. ++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ +
T Consensus 134 ~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 204 (302)
T 2xn4_A 134 NE----WFHVAPMNTRRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N 204 (302)
T ss_dssp TE----EEEECCCSSCCBSC-EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred Ce----EeecCCCCCcccCc-eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--C
Confidence 43 21111111111111 22222 46777777643 358899988764321 22211112222222 3
Q ss_pred CCcEEEEEeCC-----CcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCC
Q 015484 270 NEWVLATASSD-----TTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNR 334 (406)
Q Consensus 270 ~~~~l~~~~~d-----g~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~ 334 (406)
+. +++.|+.+ ..+.+||+.+..- .+..+.........+.+ ++ .+++.|+.++ .+.+||+.+
T Consensus 205 ~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 205 NL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp TE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred CE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCC
Confidence 44 77777654 3688999876431 01111111111122222 34 3677776553 478888765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.84 E-value=2.1 Score=44.89 Aligned_cols=192 Identities=11% Similarity=0.222 Sum_probs=106.9
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC--CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH--DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 122 ~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
-.+|.. .++|.-. ..++.|||+.... .++.| ..+|.-=.|-... .|+-.+ +..|.-|++...
T Consensus 72 IMnP~~-~iiALra-g~~lQiFnl~~k~-----------klks~~~~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~ 135 (1630)
T 1xi4_A 72 IMNPAS-KVIALKA-GKTLQIFNIEMKS-----------KMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGE 135 (1630)
T ss_pred ccCCCc-ceEEEec-CCeEEEeehHHhh-----------hhcccccCCCceEEEecCCC--eeEEEc-CCeEEEeccCCC
Confidence 456766 4666554 6789999998732 22233 3467666776544 354443 467999999652
Q ss_pred cCCceeeeeeeeecc----CccEEEEEeeCCCCCEEEEEe------cCCcEEEEECCCCcccccccccCCCeeEEEec--
Q 015484 200 AQDKVIDAMHVYEAH----ESVVEDVSWHLKNENLFGSAG------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN-- 267 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~-- 267 (406)
.. |...+..| ...|..-..+++..-++++|- -.|.+.+|..+.+. .+.+.+|......+...
T Consensus 136 s~-----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 136 SQ-----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred Cc-----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCC
Confidence 21 12222222 345656666663333333332 35788899887543 34445554443333321
Q ss_pred CCCCcEEEEEeC---CCcEEEEeCCCC---CCC-----cEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 268 PYNEWVLATASS---DTTVALFDMRKM---TVP-----LHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 268 ~~~~~~l~~~~~---dg~i~vwd~~~~---~~~-----~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
+....+++.+.. .+.++|.++... ..+ +..+.. ...-..++..++... ++..-+.-|.|.+||+.
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecc
Confidence 111213332222 268999988553 111 111111 123345677777765 68888899999999999
Q ss_pred CCC
Q 015484 334 RIG 336 (406)
Q Consensus 334 ~~~ 336 (406)
++.
T Consensus 289 t~~ 291 (1630)
T 1xi4_A 289 TGT 291 (1630)
T ss_pred cch
Confidence 843
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.80 E-value=2.2 Score=44.35 Aligned_cols=199 Identities=12% Similarity=0.095 Sum_probs=99.8
Q ss_pred eEEEEEeecCCceeEEEEcCCC-----CcEEEEEeC-CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecC-CC
Q 015484 106 VEIAQKIRVDGEVNRARCMPQK-----PNLVGTKTS-SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSP-FK 178 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~-----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~ 178 (406)
+.........++|.|+++.|.. ..++|+|.. |++|+|+++....... ...+.. .....++.+.. .+
T Consensus 544 L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~------~~~L~~-~~~p~si~l~~~~~ 616 (1158)
T 3ei3_A 544 LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH------KEMLGG-EIIPRSILMTTFES 616 (1158)
T ss_dssp EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE------EEECCS-SCCEEEEEEEEETT
T ss_pred eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE------EEECCC-CCCCcEEEEEEeCC
Confidence 4445555667899999998642 368899986 9999999998632110 111211 12333443322 13
Q ss_pred CCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccccc
Q 015484 179 EGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257 (406)
Q Consensus 179 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 257 (406)
..+|..|-.||.+..+.++.... .+... ..+-+ ..++.=..+...+..-+++++ +....+|.-+ ++.... ...
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg--~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~ 690 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETG--LLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVN 690 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTC--CEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBS
T ss_pred CcEEEEEeCCCeEEEEEEcCCCC--ccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccC
Confidence 33889999999987776653211 11111 11222 234433333332333333333 3444444433 221111 111
Q ss_pred CCCeeEE-EecCCC-CcEEEEEeCCCcEEEEeCCCCCC-CcEEecCCCCCeEEEEEcCCCCCEEE
Q 015484 258 EKEVNYL-SFNPYN-EWVLATASSDTTVALFDMRKMTV-PLHILSSHTEEVFQVEWDPNHETVLA 319 (406)
Q Consensus 258 ~~~v~~i-~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~i~~~p~~~~~l~ 319 (406)
...+..+ .|+... +.-++..+ ++.++|.-+..... ++..+.- ...+..++++|..+.+.+
T Consensus 691 ~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 691 LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEE
T ss_pred hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEE
Confidence 2233333 343321 22344333 45699888755332 2233332 467899999998874333
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.69 E-value=1.2 Score=41.00 Aligned_cols=109 Identities=10% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeee-eee--ccCccEEEEEeeCC---CCCEEEEEec----
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMH-VYE--AHESVVEDVSWHLK---NENLFGSAGD---- 236 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~--~~~~~i~~i~~~p~---~~~~l~~~~~---- 236 (406)
....+|+|.|+|+ ++++-...+.|.+++...+.. ..+..+. .+. .....+..|+|+|+ ++.++++-+.
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4567999999987 666654445788887654322 1111110 010 12456789999985 5556555442
Q ss_pred --------CCcEEEEECCCCc-------ccc-ccc-ccCCCeeEEEecCCCCcEEEEE
Q 015484 237 --------DCQLMIWDLRTNQ-------TQQ-RVK-AHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 237 --------dg~i~i~d~~~~~-------~~~-~~~-~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
...|.-++..... .+. .+. ........|+|.|+|..++++|
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2345555543221 111 111 1234578899999998444444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.75 Score=37.47 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=77.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCC-CCceeeeCCC-CCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDC-DPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
..+..++|+|++ .+.++ .+|.++-.+..+.... .+ .....+-... ..-.++.|.++|. +.++ .||.|.-
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEE
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEE
Confidence 478899999988 55665 6776555554331100 00 0001111000 1136888998886 4444 5699887
Q ss_pred EeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc------cc-cccCCCeeEEE
Q 015484 194 WDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ------RV-KAHEKEVNYLS 265 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~-~~~~~~v~~i~ 265 (406)
++-.+.....-+..-..+.. -=..+..|.|.| ++.+.++. |+.+.-....+..... .+ ...-...+-+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 77543322211111111111 114678999999 67777555 7776543333222111 11 11222344566
Q ss_pred ecCCCCcEEEEEeCCCcE
Q 015484 266 FNPYNEWVLATASSDTTV 283 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i 283 (406)
|.|++. +.++. +|.+
T Consensus 189 f~~~G~-l~~v~--~g~~ 203 (236)
T 1tl2_A 189 FSSVGT-LFGVQ--GGKF 203 (236)
T ss_dssp ECTTSC-EEEEE--TTEE
T ss_pred ECCCCc-EEEEe--CCeE
Confidence 888887 44444 6643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=1.7 Score=39.37 Aligned_cols=201 Identities=13% Similarity=0.135 Sum_probs=121.4
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC----CCeeEEEecCCCCCeEEEec---
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD----KEGYGLSWSPFKEGYLVSGS--- 186 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~--- 186 (406)
...+|.-=+|-... .|+..+ +..|+-|++.. ...|...+..|. ..|..-..+++.+-++++|-
T Consensus 104 ~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~ 173 (494)
T 1bpo_A 104 MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEG-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ 173 (494)
T ss_dssp CSSCCCEEEEEETT--EEEEEC-SSEEEEEESSS-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred cCCCceEEEecCCC--eEEEEc-CCeeEEecccC-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence 34556666665544 455554 44699999976 245566666654 45666677777773444442
Q ss_pred ---CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC--CCCCEEEEEec---CCcEEEEECCCC-cccccc---
Q 015484 187 ---HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL--KNENLFGSAGD---DCQLMIWDLRTN-QTQQRV--- 254 (406)
Q Consensus 187 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~---dg~i~i~d~~~~-~~~~~~--- 254 (406)
-.|.+.+|.++.... +.+.+|.+....+...- ....+|+-+.. .+.+++.++... .....+
T Consensus 174 ~~~v~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 174 QNRVVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp TTEEEEEEEEEESTTCCE-------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred CCcccceEEEeecccccc-------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 247888999887432 44566665554444321 11234444433 378999998643 111111
Q ss_pred --------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 255 --------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 255 --------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
....+--.++..++... ++..-+.-|.|++||+.++.. +..-.-....|...+-+..... ++.....|.
T Consensus 247 ~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~Gq 323 (494)
T 1bpo_A 247 AVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNRKGQ 323 (494)
T ss_dssp EEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTE-EEEEETTCE
T ss_pred eeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee-eeeecccCCceEEecccCCCCc-EEEEccCce
Confidence 12234445788888777 888889999999999999776 5555555566666555554444 555557777
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.--.+..
T Consensus 324 Vl~v~v~e 331 (494)
T 1bpo_A 324 VLSVCVEE 331 (494)
T ss_dssp EEEEEECT
T ss_pred EEEEEEcc
Confidence 76655544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.22 E-value=2.7 Score=41.56 Aligned_cols=233 Identities=10% Similarity=0.073 Sum_probs=128.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...|++|.-..+| +|-.|+.+| +..||-..-.. ..... ......|.++.-..++ .|..|+.+| +..|
T Consensus 21 ~n~V~~I~qD~~G--~lWigT~~G-L~ryDG~~~~~-----~~~~~--~~~~~~i~~i~~d~~g--~lWigT~~G-l~~y 87 (758)
T 3ott_A 21 ASVVSCFLQDSEG--LIWIGSNKG-LFSYDGYSTQQ-----HFTYG--ENNNTRIYCGVIIDNT--YLYMGTDNG-ILVY 87 (758)
T ss_dssp CCCEEEEEECTTS--CEEEEESSC-EEEECSSCEEE-----CSCTT--STTSSCEEEEEEETTT--EEEEEETTE-EEEE
T ss_pred cceEEEEEECCCC--CEEEEECCC-ccccCCCceEE-----EEccC--CCCCceEEEEEEcCCC--cEEEEeCCC-eEEE
Confidence 4578999888877 355566777 66677433110 00000 1123468887766544 577776665 7889
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc--c--cccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR--V--KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~i~~~~~~ 270 (406)
|..+..... . .......|.++... ++.+. .++.+ .|..+|..+++.... . ......|.++....++
T Consensus 88 d~~~~~f~~---~---~~~~~~~i~~i~~~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 157 (758)
T 3ott_A 88 NYRADRYEQ---P---ETDFPTDVRTMALQ--GDTLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN 157 (758)
T ss_dssp ETTTTEECC---C---SCCCCSCEEEEEEE--TTEEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC
T ss_pred eCCCCEEEC---c---ccCCCceEEEEEec--CCcEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC
Confidence 987643211 0 01112346666543 44444 45555 688899876553211 0 1123568888888877
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS------HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
. |..|+.. -|..+|..+.. ...+.. ....|.++...+++.. |..|+. +-+..+|..... .
T Consensus 158 ~--lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~-~------ 223 (758)
T 3ott_A 158 Q--IYVGTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQ-I------ 223 (758)
T ss_dssp C--EEEEETT-EEEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTE-E------
T ss_pred C--EEEEeCC-CHhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCe-E------
Confidence 7 3445554 47788876532 111111 1234888888877653 333443 457778865411 0
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
...... ....|.++...++|. +.+ |+. +-+.+++..++.+
T Consensus 224 -----~~~~~l--~~~~i~~i~~d~~g~-lWi-gT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 224 -----KQTEAF--HNNSIKSLALDGNGD-LLA-GTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp -----EEEEEE--EEEEEEEEEECTTCC-EEE-EET-TEEEEECCTTSCC
T ss_pred -----EeccCC--CCCeEEEEEEcCCCC-EEE-EeC-CceeEEecCCCcE
Confidence 001111 123588888888887 444 343 4588888776543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.67 Score=40.96 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=17.2
Q ss_pred CCCcEEEEEeCCC------cEEEEeCCCcccCCCc
Q 015484 370 NDPWVISSVADDN------TVQVWQMTDSIYRDDD 398 (406)
Q Consensus 370 ~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~ 398 (406)
+++ +++.||.++ .|.++++.++.+.+..
T Consensus 316 ~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 316 NNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp TTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 455 777777553 3666688888765543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.7 Score=38.45 Aligned_cols=148 Identities=7% Similarity=0.067 Sum_probs=79.1
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEec-------
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAGD------- 236 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~~------- 236 (406)
....|+|.|+++ .|+.+...|.|++++.... ....+..+ ............|+++|+ ++.++++-..
T Consensus 19 ~P~~i~~~pdG~-~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNH-GMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTC-CEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCC-EEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457999999886 4667777899999985322 11111111 111122345789999985 4566655433
Q ss_pred CCcEEEEECCCCc----ccc----ccc---ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC
Q 015484 237 DCQLMIWDLRTNQ----TQQ----RVK---AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT 292 (406)
Q Consensus 237 dg~i~i~d~~~~~----~~~----~~~---~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~ 292 (406)
...|..+++.... ... .+. ........|+|.|+|. ++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666654321 111 111 1112246799999996 4444332 2467777765320
Q ss_pred ------------CCcEEecCCCCCeEEEEEcC-CCCCEEEE
Q 015484 293 ------------VPLHILSSHTEEVFQVEWDP-NHETVLAS 320 (406)
Q Consensus 293 ------------~~~~~~~~h~~~v~~i~~~p-~~~~~l~s 320 (406)
.+-..-.++ .....++|+| .+. ++++
T Consensus 176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEE
T ss_pred CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEE
Confidence 111111222 3468899999 554 4443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.55 Score=40.56 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=70.9
Q ss_pred cEEEEEeC----C-----CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC-----CeEEEE
Q 015484 129 NLVGTKTS----S-----CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD-----NKICLW 194 (406)
Q Consensus 129 ~~l~~~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iw 194 (406)
.+++.|+. + ..+.+||..+..-.. ...+........++.+ ++. +++.|+.+ ..+.+|
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~------~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~y 142 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP------CAPMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERY 142 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEE------CCCCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEE
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeE------CCCCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEE
Confidence 56666665 2 358888887643221 1111111111112222 344 66776643 357888
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC-----CcEEEEECCCCccc--ccccccCCCeeEEEec
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-----CQLMIWDLRTNQTQ--QRVKAHEKEVNYLSFN 267 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~i~~~ 267 (406)
|+.+..- ..+............ +.. ++.+++.|+.+ ..+.+||+.+.+-. ..+.........+.+
T Consensus 143 d~~~~~W----~~~~~~p~~r~~~~~-~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 214 (308)
T 1zgk_A 143 EPERDEW----HLVAPMLTRRIGVGV-AVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL- 214 (308)
T ss_dssp ETTTTEE----EECCCCSSCCBSCEE-EEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred CCCCCeE----eECCCCCccccceEE-EEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-
Confidence 8876431 111111111111112 222 46777777754 45889998776432 122111122222333
Q ss_pred CCCCcEEEEEeCC-----CcEEEEeCCCC
Q 015484 268 PYNEWVLATASSD-----TTVALFDMRKM 291 (406)
Q Consensus 268 ~~~~~~l~~~~~d-----g~i~vwd~~~~ 291 (406)
++. +++.|+.+ ..+.+||+.+.
T Consensus 215 -~~~-iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 215 -HNC-IYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp -TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred -CCE-EEEEeCCCCCCccceEEEEeCCCC
Confidence 344 77777654 46899998764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.69 E-value=2.6 Score=38.75 Aligned_cols=122 Identities=7% Similarity=0.086 Sum_probs=63.6
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------CCCCCeeEEEecCC--
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------GHDKEGYGLSWSPF-- 177 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~-- 177 (406)
+++.....--...+.|+|.|++ .++++-...+.|++++..+.... .+..+. ........|+|+|+
T Consensus 17 f~~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~------~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 17 FDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK------TVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp SCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE------EEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred eEEEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe------EEecCCccccccCCCCceeEEEECCCcC
Confidence 4444443334577899999999 56665444457888876432111 111111 12456779999995
Q ss_pred -CCCeEEEecC-------------CCeEEEEeCCCccCC-ceeeee-eeee-ccCccEEEEEeeCCCCCEEEEEec
Q 015484 178 -KEGYLVSGSH-------------DNKICLWDVSALAQD-KVIDAM-HVYE-AHESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 178 -~~~~l~s~~~-------------dg~i~iwd~~~~~~~-~~~~~~-~~~~-~~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
+. .|..+.. ...|.-+++...... ...+.+ ..+. ........|+|.| ++.++++.+.
T Consensus 90 ~~g-~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 90 NNP-YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp TSC-EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred cCC-EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 44 4444332 235555655432110 011111 1111 1123478899999 5677776553
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=4.2 Score=40.42 Aligned_cols=157 Identities=10% Similarity=0.062 Sum_probs=80.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC----CCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG----HDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
.+.|.+|+++|..+..+.+++..+.|...+-... .+.++..... ....+.+|++.|...+.++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~------tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~ 87 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTS------KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV 87 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTT------EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCC------CeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC
Confidence 4789999999987677777777776655443221 1221111000 12468999999865434544432211
Q ss_pred ----EEEEeCCCccCCceeeeeee-ee-----ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-----
Q 015484 191 ----ICLWDVSALAQDKVIDAMHV-YE-----AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK----- 255 (406)
Q Consensus 191 ----i~iwd~~~~~~~~~~~~~~~-~~-----~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----- 255 (406)
-.||....+. ...+.+.. +. .....+..++++|.+...+.++...+.|. .....++.-..+.
T Consensus 88 ~~~~~~v~~S~DgG--~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 88 GDEWAAFYVSEDRG--QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp TSSCCEEEEESSTT--SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCC
T ss_pred CCcccEEEEECCCC--CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccc
Confidence 3344333322 22222211 00 00113567888886666776666444432 2333344322221
Q ss_pred -ccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 256 -AHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 256 -~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
.....+..+.++|.....++++..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1124578899988654355555544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=1.2 Score=38.45 Aligned_cols=101 Identities=8% Similarity=0.111 Sum_probs=52.2
Q ss_pred eEEEecCC--------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECC
Q 015484 181 YLVSGSHD--------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLR 246 (406)
Q Consensus 181 ~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~ 246 (406)
+++.|+.+ ..+.+||+.+.. ...+.......... +++.. ++.+++.|+. -..+.+||+.
T Consensus 101 lyv~GG~~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~ 173 (315)
T 4asc_A 101 IYVVGGREIKDGERCLDSVMCYDRLSFK----WGESDPLPYVVYGH-TVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPK 173 (315)
T ss_dssp EEEECCEESSTTCCBCCCEEEEETTTTE----EEECCCCSSCCBSC-EEEEE--TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred EEEEeCCcCCCCCcccceEEEECCCCCc----EeECCCCCCcccce-eEEEE--CCEEEEEeCCCCCCcccceEEEEeCC
Confidence 66677632 458888887643 21111111111111 12222 5677778776 2468899988
Q ss_pred CCccc--ccccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCC
Q 015484 247 TNQTQ--QRVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKM 291 (406)
Q Consensus 247 ~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~ 291 (406)
+.+-. ..+......-.++.+ ++. +++.|+.++ .+.+||+.+.
T Consensus 174 ~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 174 KFEWKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCeEEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCC
Confidence 76432 222111111222222 344 777777654 5888998764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.63 E-value=2.4 Score=36.57 Aligned_cols=63 Identities=11% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCEEEEEec------CCcEEEEECCCCcccc--cccccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCC
Q 015484 227 NENLFGSAGD------DCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMT 292 (406)
Q Consensus 227 ~~~~l~~~~~------dg~i~i~d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 292 (406)
++.+++.|+. -..+.+||+.+.+-.. .+........++.+ ++. +++.|+.++ .+.+||+.+..
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence 5677777764 2358899998764321 12111111222222 344 777776432 57789987643
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=2.6 Score=41.25 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=93.6
Q ss_pred cEEEEEeCC----CeEEEEeCCCccccccCCCCCce-ee----eCCCCCeeEEEecC-CCCCeEEEecCC------CeEE
Q 015484 129 NLVGTKTSS----CEVYVFDCAKQAEKQQDDCDPDL-RL----KGHDKEGYGLSWSP-FKEGYLVSGSHD------NKIC 192 (406)
Q Consensus 129 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~-~~----~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~ 192 (406)
.+++.|+.+ ..+.+||..+..- .... .+ ......-.+++..+ ++. +++.|+.+ ..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W------~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKI------DMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCE------EEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCE
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeE------EEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEE
Confidence 567777643 4588888876321 1111 10 00111112333332 455 77777654 3577
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCccccc-----ccccCCCeeEEE
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQR-----VKAHEKEVNYLS 265 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~i~ 265 (406)
+||+.+.. +..+.........-..+.+. ++.+++.|+.++ .+.+||+.+..-... +........++.
T Consensus 472 ~yd~~t~~----W~~~~~~p~~R~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v 545 (695)
T 2zwa_A 472 IFDMKTRE----WSMIKSLSHTRFRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE 545 (695)
T ss_dssp EEETTTTE----EEECCCCSBCCBSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred EEeCCCCc----EEECCCCCCCcccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence 88887642 21111111111111222222 578888887655 689999987653211 211222223355
Q ss_pred ecCCCCcEEEEEeC--C-----CcEEEEeCCCCCC--C-----cEEec-CCCCCeEEEEEcCCCCCEEEEEeC-------
Q 015484 266 FNPYNEWVLATASS--D-----TTVALFDMRKMTV--P-----LHILS-SHTEEVFQVEWDPNHETVLASSAD------- 323 (406)
Q Consensus 266 ~~~~~~~~l~~~~~--d-----g~i~vwd~~~~~~--~-----~~~~~-~h~~~v~~i~~~p~~~~~l~s~~~------- 323 (406)
+......+++.|+. + ..+.+||+.+..- . +.... ........+.+ .++ .+++.|+.
T Consensus 546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~-~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPR-KLLIVGGTSPSGLFD 623 (695)
T ss_dssp EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETT-EEEEECCBCSSCCCC
T ss_pred EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCC-EEEEECCccCCCCCC
Confidence 56552337777765 2 3588999887551 1 11111 11112222222 224 36777764
Q ss_pred -CCcEEEEeCCC
Q 015484 324 -DRRLMVWDLNR 334 (406)
Q Consensus 324 -dg~i~iwd~~~ 334 (406)
...+.+||+.+
T Consensus 624 ~~~~v~~yd~~t 635 (695)
T 2zwa_A 624 RTNSIISLDPLS 635 (695)
T ss_dssp TTTSEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 34588888876
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.01 E-value=4.8 Score=36.02 Aligned_cols=146 Identities=5% Similarity=-0.009 Sum_probs=70.1
Q ss_pred CeeEEEecCCC-CCeEEEecCCCeEEEEeCCCccCCceeeeeeeee----------------ccCccEEEEEeeCCCCCE
Q 015484 168 EGYGLSWSPFK-EGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYE----------------AHESVVEDVSWHLKNENL 230 (406)
Q Consensus 168 ~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~~i~~i~~~p~~~~~ 230 (406)
.|.++++.|.+ .+.|.++...+.|... ..+.. .+..+.... .....+.+|.++|.+...
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~--tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~ 191 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGA--SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH 191 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTS--BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCC--CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE
Confidence 57789998743 3366666666655443 22211 111111100 112357889998854444
Q ss_pred EEEEecCCcEEEEECCCCcccccccc-------------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE
Q 015484 231 FGSAGDDCQLMIWDLRTNQTQQRVKA-------------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297 (406)
Q Consensus 231 l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 297 (406)
+..+..++.|...+ ..++....+.. ....+.+|.++|.....|.++...+ |...+-. ......
T Consensus 192 l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~--G~tW~~ 267 (394)
T 3b7f_A 192 LYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR--EGVWKR 267 (394)
T ss_dssp EEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT--TTEEEC
T ss_pred EEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC--CCcceE
Confidence 44454444444432 22332222110 0134889999987443666676554 4444322 111111
Q ss_pred ec--CCC---CCeEEEEEcCCCCCEEEEE
Q 015484 298 LS--SHT---EEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 298 ~~--~h~---~~v~~i~~~p~~~~~l~s~ 321 (406)
+. ... ..+..+.++|..+..|..+
T Consensus 268 ~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 268 IGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp GGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 11 111 3467788887543334444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.36 E-value=5.4 Score=35.05 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=80.0
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee-eeeeccCccEEEEEeeCC---CCCEEEEEe--cCCc
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM-HVYEAHESVVEDVSWHLK---NENLFGSAG--DDCQ 239 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~---~~~~l~~~~--~dg~ 239 (406)
-...+.|+|.|+|. ++++--..|.|++++...+.. ..+..+ ..+.........|+++|+ ++.++++-+ .++.
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34567999999987 666665589999998654322 111101 111223456889999984 355554322 3455
Q ss_pred EEEEECCCCc----c---cc----ccc-ccCCCeeEEEecCCCCcEEEEEeC-------------CCcEEEEeCCCCC--
Q 015484 240 LMIWDLRTNQ----T---QQ----RVK-AHEKEVNYLSFNPYNEWVLATASS-------------DTTVALFDMRKMT-- 292 (406)
Q Consensus 240 i~i~d~~~~~----~---~~----~~~-~~~~~v~~i~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~-- 292 (406)
|.-|.+..+. . .. .+. ........|.|.|+|. ++++.+. .|.|.-++....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666655421 1 11 111 1223446799999998 5555332 3555555554320
Q ss_pred -CC----cEEecCCCCCeEEEEEcCCCC
Q 015484 293 -VP----LHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 293 -~~----~~~~~~h~~~v~~i~~~p~~~ 315 (406)
.| ...-.+|. ....++|+|++.
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~ 214 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQR 214 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCC
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCC
Confidence 00 11122443 456899999875
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.20 E-value=6.1 Score=35.29 Aligned_cols=156 Identities=8% Similarity=-0.040 Sum_probs=73.7
Q ss_pred CCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee-eec---------cCccEEEEEeeCCCCCEEEEEec
Q 015484 167 KEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV-YEA---------HESVVEDVSWHLKNENLFGSAGD 236 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---------~~~~i~~i~~~p~~~~~l~~~~~ 236 (406)
..+.+|.+.|...+.|..+..++.|... ..+.. .+..+.. ... ....+.+|.++|.+...+.+++.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH 252 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence 4578999988543356656544544333 22211 1111110 000 01348889999865566666665
Q ss_pred CCcEEEEECCCCcccccccc--cC---CCeeEEEecCCCCcEEEEEeC-----------CCcEEEEeCCCCCCCcEEecC
Q 015484 237 DCQLMIWDLRTNQTQQRVKA--HE---KEVNYLSFNPYNEWVLATASS-----------DTTVALFDMRKMTVPLHILSS 300 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~--~~---~~v~~i~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~ 300 (406)
.+ |...+- .++....+.. .. ..+.++.++|.....+.++.. ++...+|........-..+..
T Consensus 253 ~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~ 330 (394)
T 3b7f_A 253 CG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR 330 (394)
T ss_dssp TE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB
T ss_pred Ce-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC
Confidence 44 544432 2332222211 11 345678888754334444432 333456655443222222211
Q ss_pred --CC-C-----CeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 301 --HT-E-----EVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 301 --h~-~-----~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
.. . ....++++|..+..|+.++.++.|.
T Consensus 331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 00 0 1135788886533355666565554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.53 E-value=11 Score=37.00 Aligned_cols=239 Identities=7% Similarity=-0.050 Sum_probs=121.8
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-------CCCCCeeEEEecCCCCCeEEEecCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-------GHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
..|.++.-..++. |-.|+.+| +..++...... .....+. -....|.++.-..++. |-.|+ +
T Consensus 324 ~~v~~i~~D~~g~--lWiGt~~G-l~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~ 391 (758)
T 3ott_A 324 NQFYSLFRDSKGF--YWFGGANG-LIRFTDPAGER------HDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-D 391 (758)
T ss_dssp CBEEEEEECTTCC--EEEEETTE-EEEESCTTSSC------CCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-T
T ss_pred ceEEEEEEcCCCC--EEEeeCCc-ceeeccccccc------ceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-C
Confidence 3567776666663 44455555 55565543110 0111111 0124578887766554 55565 4
Q ss_pred CeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCC-----ccc---ccc--
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN-----QTQ---QRV-- 254 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~-- 254 (406)
+-|..+|..++.. ........ ....|.++...+ ...|-.|+..+-|.++|.++. ... ..+
T Consensus 392 ~GL~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~i~~d~--~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 392 GSINRYDYATRQF----IHYNIVDNTGTYNTNWTYYIFEDT--AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp TEEEEEETTTTEE----EEEEEECCC--CBSSSEEEEEECT--TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred CcHhhcCcCCCcE----EEeecCCCcCCCCCceEEEEEEcC--CCCEEEEECCCceEEEccccccccCCcceeccccccc
Confidence 5688899876432 11111010 124577777654 344445776667888886531 111 011
Q ss_pred -c-ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 255 -K-AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH----TEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 255 -~-~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
. .....|.++...++|. +.+.++..+-|..+|..+.. +..+... ...+.++....+|. |..|+..| +.
T Consensus 466 ~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~--lWigt~~G-l~ 539 (758)
T 3ott_A 466 HNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTRE--VTKLFADELTGEKSPNYLLCDEDGL--LWVGFHGG-VM 539 (758)
T ss_dssp GGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTE--EEEECTTTSCGGGCEEEEEECTTSC--EEEEETTE-EE
T ss_pred ccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCc--eEEecCCCcCCCcccceEEECCCCC--EEEEecCc-eE
Confidence 1 1224588999988888 54423333558889987543 3332211 24678888888885 34455544 77
Q ss_pred EEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 329 VWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.|+.....-... . ..+ + ....|.++... +|. +.++ +..| |..+++.+..+
T Consensus 540 ~~~~~~~~~~~~--~-~~g-------l--~~~~i~~i~~~-~g~-lWi~-t~~G-l~~~~~~~~~~ 589 (758)
T 3ott_A 540 RINPKDESQQSI--S-FGS-------F--SNNEILSMTCV-KNS-IWVS-TTNG-LWIIDRKTMDA 589 (758)
T ss_dssp EECC--CCCCBC--C-CCC------------CCEEEEEEE-TTE-EEEE-ESSC-EEEEETTTCCE
T ss_pred EEecCCCceEEe--c-ccC-------C--CccceEEEEEC-CCC-EEEE-CCCC-eEEEcCCCcee
Confidence 788654221100 0 000 0 12346666653 554 4444 3444 66677766543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.18 E-value=6.9 Score=35.98 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=61.9
Q ss_pred CeeEEEecCCCCcEEEEEeCCCcEEEEeCCCC--CCCcEEec---------CCCCCeEEEEEcCC---CCCEEEEEeC--
Q 015484 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKM--TVPLHILS---------SHTEEVFQVEWDPN---HETVLASSAD-- 323 (406)
Q Consensus 260 ~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~---------~h~~~v~~i~~~p~---~~~~l~s~~~-- 323 (406)
.-..|+|.|++...|+++...|.|++++.... ..++..+. ........|+|+|+ +..+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 45789999998423455567899999975432 12233221 11456889999996 2234444332
Q ss_pred C----------CcEEEEeCCCCCcccccccccCCCCeeEEEec--CCCCCeeeEEeCCCCCcEEEEEeCC
Q 015484 324 D----------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHG--GHKAKISDFSWNKNDPWVISSVADD 381 (406)
Q Consensus 324 d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~s~~~d 381 (406)
+ ..|.-|.+........ . ....+.++... ........|+|.|+|. |.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~--d--~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQV--D--LRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSB--C--GGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCcc--C--CCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCC
Confidence 1 1344455542110000 0 00122333221 1223468899999997 66666643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.07 E-value=4.4 Score=35.54 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=25.4
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEEC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDL 245 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~ 245 (406)
..+.+||+.+.. +..+.........-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQ----WSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTE----EEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCc----EEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 578889987743 22222211111110222333 5677777764 345777876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=7.3 Score=38.03 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCCcEEEEEeCC------CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEEEeCC
Q 015484 126 QKPNLVGTKTSS------CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICLWDVS 197 (406)
Q Consensus 126 ~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~ 197 (406)
++ .+++.|+.+ ..+.+||..+..-.. ...+...... .+++...++. +++.|+.++ .+.+||+.
T Consensus 451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~------~~~~p~~R~~-h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 451 NN-QLLLIGGRKAPHQGLSDNWIFDMKTREWSM------IKSLSHTRFR-HSACSLPDGN-VLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp TT-EEEEECCBSSTTCBCCCCEEEETTTTEEEE------CCCCSBCCBS-CEEEECTTSC-EEEECCBCSSCSEEEEETT
T ss_pred CC-EEEEEcCCCCCCCccccEEEEeCCCCcEEE------CCCCCCCccc-ceEEEEcCCE-EEEECCCCCCCCEEEEECC
Confidence 44 567777643 357888887742211 1111111111 1222222455 778887655 68899987
Q ss_pred CccCCceeeeeee---eeccCccEEEEEeeCCCCCEEEEEec--C-----CcEEEEECCCCc
Q 015484 198 ALAQDKVIDAMHV---YEAHESVVEDVSWHLKNENLFGSAGD--D-----CQLMIWDLRTNQ 249 (406)
Q Consensus 198 ~~~~~~~~~~~~~---~~~~~~~i~~i~~~p~~~~~l~~~~~--d-----g~i~i~d~~~~~ 249 (406)
+.. +..+.. .........++.+....+.+++.|+. + ..+.+||+.+..
T Consensus 522 t~~----W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 522 EEI----FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTE----EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCc----eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 743 211111 11111122234455433677777775 2 458899998876
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.58 E-value=16 Score=31.96 Aligned_cols=117 Identities=5% Similarity=-0.065 Sum_probs=60.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC-CCCeeEEEe--cCCCCCeEEEe-cCCCeEEEEeCCCccCCce
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-DKEGYGLSW--SPFKEGYLVSG-SHDNKICLWDVSALAQDKV 204 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~ 204 (406)
.++++++.||.|+-+|..++... -.+... ..++....- .+.+...++.. +.||.|..++..++.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~--------W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHII--------WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEE--------EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEE--------EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 36777888888888887764332 111111 011111000 01122133333 5899999999877632211
Q ss_pred eeeeeeeeccCccEEE---EEe-eC---CCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 205 IDAMHVYEAHESVVED---VSW-HL---KNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 205 ~~~~~~~~~~~~~i~~---i~~-~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
+.. ..+ ...+++.. ... .+ ..+..+++|+.+|.+...|+++|+.+..+.
T Consensus 83 ~~~-~~l-v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 83 LSI-RQL-VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEH-HHH-HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ecc-ccc-eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 110 000 01122221 000 00 035667799999999999999999887764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.77 E-value=9.7 Score=33.31 Aligned_cols=112 Identities=9% Similarity=0.058 Sum_probs=63.2
Q ss_pred eEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEe--eCCCCCEEEEE-ecCCcEEEEECCCCcccccccc-
Q 015484 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW--HLKNENLFGSA-GDDCQLMIWDLRTNQTQQRVKA- 256 (406)
Q Consensus 181 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~- 256 (406)
+++.++.||.|.-+|..+++....++.- ...++....- .+.++..++.. +.||.|..++..+|.....+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 7888999999999999887654333211 0011111110 01123344333 6899999999887754332211
Q ss_pred ---cCCCeeE---EEe-cC----CCCcEEEEEeCCCcEEEEeCCCCCCCcEEec
Q 015484 257 ---HEKEVNY---LSF-NP----YNEWVLATASSDTTVALFDMRKMTVPLHILS 299 (406)
Q Consensus 257 ---~~~~v~~---i~~-~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 299 (406)
...++.. ... .+ .+. .+++|+.+|.+...|+++++. +..+.
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~-~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEI-ISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCE-EEEES
T ss_pred cceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcE-EEEEe
Confidence 1122221 000 00 233 788999999999999999775 44443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.15 E-value=2.9 Score=39.17 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------C-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----------P-LHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
.....+..+|+|++++++|-.+.++.++|++.... . +.... -.-.....+|.++| +...|..-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 34467889999997777777788999999984211 0 11122 23457889999999 45667778999
Q ss_pred EEEEeCCC
Q 015484 327 LMVWDLNR 334 (406)
Q Consensus 327 i~iwd~~~ 334 (406)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999975
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=83.22 E-value=21 Score=30.55 Aligned_cols=86 Identities=6% Similarity=0.055 Sum_probs=46.6
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEE---eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATA---SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
..|+..++...+.. .+. ... +..|++.++.+..+- .....|...++.... ...+..+.. ..|+|++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEEC
Confidence 46777787765432 221 122 235677788444443 223456666665422 444444433 4567788
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 015484 315 ETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~ 334 (406)
+.+..+......|.+-++..
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp TEEEEECTTTCCEEEEETTT
T ss_pred CEEEEEeCCCceEEEEECCC
Confidence 76555544456777777654
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=82.17 E-value=42 Score=33.25 Aligned_cols=153 Identities=12% Similarity=0.106 Sum_probs=78.2
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEeeCCCCCEEEEEecCCc--
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSWHLKNENLFGSAGDDCQ-- 239 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~p~~~~~l~~~~~dg~-- 239 (406)
...|.+|+++|.....++++...+.|...+ .+. .....+..... ....+.+|+++|.+...+.++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG--~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCC--CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 458999999998766788887777665443 221 22322211110 13469999999855555545442211
Q ss_pred --EEEE-ECCCCcccccccc---------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec------CC
Q 015484 240 --LMIW-DLRTNQTQQRVKA---------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS------SH 301 (406)
Q Consensus 240 --i~i~-d~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~h 301 (406)
-.|| ....++.-..+.. ....+..++++|.....+..+...+.| |--......-..+. ..
T Consensus 90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~ 167 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTN 167 (789)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCST
T ss_pred cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCC
Confidence 2233 3333433222210 111356788888655466666644433 32222221111211 11
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
...+..+.++|.....+..+..+
T Consensus 168 ~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 168 GIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCeEEEEECCCCCCEEEEEEcC
Confidence 24588899998654335555544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=80.38 E-value=25 Score=29.62 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=120.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|..|+.-.. +.++. . ||.|+.|-........ .|.. ....|..|+-.... .++. . ||.|..|-.
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg----~p~~----~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLT----MPAA----TQSGVDAIAAGNYH--SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTS----CCGG----GGSCCCEEEECSSE--EEEE-E-TTEEEEEEC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCC----CCcc----CCCCEEEEEeCCCE--EEEE-E-CCEEEEeeC
Confidence 5666665543 33444 4 8999999876632211 1111 12356667664322 2333 4 899999987
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
+....... + ..-...|..|+.. ....++-. +|.|..|-......+.........|..++..... .++
T Consensus 89 n~~Gqlg~--P----~~~~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~- 155 (282)
T 3qhy_B 89 NEDGQTTV--P----AEARSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALA- 155 (282)
T ss_dssp CTTSTTCC--C----GGGSSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE-
T ss_pred CCCCCCCC--C----cccCCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEE-
Confidence 65432211 0 0113467777765 33334445 9999999876533322222234567777765432 233
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
-. ||.|..|-.....+ +.....-...|..|+..... .++. .||.|..|-....++.-.. .
T Consensus 156 l~-~G~v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p--------~------ 215 (282)
T 3qhy_B 156 VK-NGGVIAWGDNYFGQ-TTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVP--------T------ 215 (282)
T ss_dssp EE-TTEEEEEECCTTST-TSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCC--------G------
T ss_pred EE-CCEEEEecCCCCCC-CCCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCC--------c------
Confidence 34 79999997654332 11111113568888776544 2444 5999999987654332110 0
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
.....|..++-..... ++. . ||.|..|=-+.
T Consensus 216 ~~~~~v~~i~~G~~h~--~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 216 EALSGVSAIASGEWYS--LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp GGGSSCCEEEECSSCE--EEE-E-TTEEEEESTTC
T ss_pred ccCCCceEEEcCCCEE--EEE-E-CCEEEEecCCC
Confidence 0123466666554432 333 3 88888886554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 406 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.4 bits (194), Expect = 4e-17
Identities = 26/193 (13%), Positives = 66/193 (34%), Gaps = 17/193 (8%)
Query: 152 QQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA---- 207
+ GH + + + + S S+D + +W V+ +
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 208 ---------MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258
E+ + K S D + +WD+ T + H+
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318
V + F+ ++ + + + D T+ ++D + + L++H V +++ +
Sbjct: 248 NWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYV 304
Query: 319 ASSADDRRLMVWD 331
+ + D+ + VW+
Sbjct: 305 VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 1e-15
Identities = 51/270 (18%), Positives = 97/270 (35%), Gaps = 44/270 (16%)
Query: 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197
+ + GHD +S P ++VS S D I +W+V
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQ 131
Query: 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAH 257
+ + H V V + ++ L S +D + +W + T + + ++ H
Sbjct: 132 T------GYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 258 EKEVNYLSFNPYNEW-------------------VLATASSDTTVALFDMRKMTVPLHIL 298
V +S+ P + + L + S D T+ ++D+ L L
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTL 243
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
H V V + + + S ADD+ L VWD + + H
Sbjct: 244 VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKN--------------KRCMKTLNAH 288
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQ 388
+ ++ ++K P+V++ + D TV+VW+
Sbjct: 289 EHFVTSLDFHKTAPYVVTG-SVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.8 bits (169), Expect = 7e-14
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 8/152 (5%)
Query: 136 SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWD 195
+ + + + G S +L+SGS D I +WD
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255
VS + H++ V V +H S DD L +WD + + + +
Sbjct: 234 VSTGMC------LMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFD 287
AHE V L F+ + + T S D TV +++
Sbjct: 287 AHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 8e-13
Identities = 45/272 (16%), Positives = 83/272 (30%), Gaps = 48/272 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA-------------- 207
L GH + + P +VS S D I +WD ++ +
Sbjct: 13 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 208 ---------------------MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246
+ N + SA D + +W+++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306
T + H + V + N +A+ S+D TV ++ + L H V
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKE-CKAELREHRHVVE 189
Query: 307 QVEWDPNHETVLASSADDRRLMVWDLNRI------GDEQLEL-DAEDGPPELLFSHGGHK 359
+ W P S A D+ +++ D G L + GH
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHD 247
Query: 360 AKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ ++ +++S ADD T++VW +
Sbjct: 248 NWVRGVLFHSGGKFILSC-ADDKTLRVWDYKN 278
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 49/229 (21%)
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268
+ H S V V +H ++ SA +D + +WD T ++ +K H V +SF+
Sbjct: 11 YALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 269 Y-----------------------------------------NEWVLATASSDTTVALFD 287
N + +AS D T+ +++
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDG 347
++ + + H E V V + + T++AS ++D+ + VW + + +
Sbjct: 130 VQTGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 348 PPELLFSHGGHKAKISDFS-----WNKNDPWVISSVADDNTVQVWQMTD 391
+ ++ + IS+ + + + S + D T+++W ++
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 0.001
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 294 PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353
+ LS H V +V + P +V+ S+++D + VWD GD + L + +
Sbjct: 9 EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDIS 66
Query: 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
K S + W T+ S +
Sbjct: 67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 112
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 2e-16
Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 18/202 (8%)
Query: 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246
+ D + D + + LF S D +WD+R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-V 305
+Q HE ++N + F P N AT S D T LFD+R + + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365
V + + +LA DD VWD + + GH ++S
Sbjct: 274 TSVSFSKSGRLLLAGY-DDFNCNVWDALK--------------ADRAGVLAGHDNRVSCL 318
Query: 366 SWNKNDPWVISSVADDNTVQVW 387
+ V + + D+ +++W
Sbjct: 319 GVTDDGMAVATG-SWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 2e-15
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS 233
VSG+ D LWDV + HES + + + N N F +
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMC------RQTFTGHESDINAICFF-PNGNAFAT 243
Query: 234 AGDD--CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM 291
DD C+L + +SF+ L D ++D K
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA 302
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
+L+ H V + + +A+ + D L +W+
Sbjct: 303 D-RAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.4 bits (124), Expect = 3e-08
Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 23/228 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
L+GH + Y + W LVS S D K+ +WD + +H S V
Sbjct: 51 LRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK------VHAIPLRSSWVMTC 103
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + N G D I++L+T + RV +S
Sbjct: 104 AYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
T + + S A D +WD+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE------- 215
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+ GH++ I+ + N + +DD T +++ +
Sbjct: 216 -------GMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDL 255
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (114), Expect = 6e-07
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231
+S+S L++G D +WD + V H++ V + +
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADR------AGVLAGHDNRVSCLGVT-DDGMAV 327
Query: 232 GSAGDDCQLMIWD 244
+ D L IW+
Sbjct: 328 ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188
L+ V+D K L GHD L + + +GS D
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAG--------VLAGHDNRVSCLGVTD-DGMAVATGSWD 333
Query: 189 NKICLWD 195
+ + +W+
Sbjct: 334 SFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.6 bits (184), Expect = 1e-15
Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 21/180 (11%)
Query: 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA-MHVYEAHESVVEDVSWHLKNENLFG 232
SP Y+ +GS D + +WD + +D+ H+ V V + ++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVV 270
Query: 233 SAGDDCQLMIWDLRTNQTQQRVKA------------HEKEVNYLSFNPYNEWVLATASSD 280
S D + +W+L+ + K H+ V ++ +E+ + + S D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKD 329
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN-----HETVLASSADDRRLMVWDLNRI 335
V +D + PL +L H V V V A+ + D + +W +I
Sbjct: 330 RGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 7e-15
Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 14/180 (7%)
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
P + + V V+D ++ D + GH Y + ++ +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-ENESGTGHKDSVYSVVFTR-DGQSV 269
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMH------VYEAHESVVEDVSWHLKNENLFGSAGD 236
VSGS D + LW++ + Y H+ V V+ +N+ S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSK 328
Query: 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW-----VLATASSDTTVALFDMRKM 291
D ++ WD ++ ++ H V ++ + V AT S D ++ +K+
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 39/226 (17%)
Query: 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246
D + D + + E V V+ + + D + +WD
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 247 TNQTQQRVK-------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK--------- 290
T +R+ H+ V + F + + + S D +V L++++
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 291 --MTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGP 348
H + V V N E + S + DR ++ WD
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKS-------------- 339
Query: 349 PELLFSHGGHKAKISDFSWNKNDPW-----VISSVADDNTVQVWQM 389
L GH+ + + V ++ + D ++W+
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 19/250 (7%)
Query: 148 QAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA 207
A + + D + +SP +L +G+ D I +WD+ +
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDI--------ENR 153
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
V + S +G + + + E V ++ +
Sbjct: 154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 268 PYNEWVLATASSDTTVALFD------MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321
P + +A S D V ++D + ++ + H + V+ V + + ++ + S
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSG 272
Query: 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADD 381
+ DR + +W+L ++ GHK + + +ND +++S + D
Sbjct: 273 SLDRSVKLWNLQ--NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG-SKD 329
Query: 382 NTVQVWQMTD 391
V W
Sbjct: 330 RGVLFWDKKS 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 17/148 (11%), Positives = 45/148 (30%), Gaps = 9/148 (6%)
Query: 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM---RKMTVPLHILSSHTEEV 305
Q+ + L + + ++ L++ R++ V LH HT V
Sbjct: 6 YNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV 65
Query: 306 FQVEWDPNHETVLASSADDRRLMVWDLNRIGD----EQLELDAEDGPPELLFSHGGHKAK 361
V++ + E + ++ ++ V+ ++ +D S
Sbjct: 66 CCVKFSNDGEYL--ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 362 ISDFSWNKNDPWVISSVADDNTVQVWQM 389
I ++ + ++ + D
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIE 151
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 7e-14
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 19/187 (10%)
Query: 154 DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEA 213
+ L+GH Y F ++VSGS D I +WDV + + +H
Sbjct: 165 ETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTSIRVWDV------ETGNCIHTLTG 215
Query: 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273
H+S+ + +N+ S D + IWD++T Q Q ++ K + ++ +N+
Sbjct: 216 HQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF 272
Query: 274 LATASSDTTVALFDMRKM----TVPLHILSSHTEEVFQVEWDPNHETVLASSAD---DRR 326
+ T+S D TV L+D++ + V+++ S + + +
Sbjct: 273 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332
Query: 327 LMVWDLN 333
L+V D +
Sbjct: 333 LLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 1e-08
Identities = 51/260 (19%), Positives = 85/260 (32%), Gaps = 59/260 (22%)
Query: 162 LKGHDKEGYG-LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA------------- 207
LKGHD L + +VSGS DN + +W + +
Sbjct: 12 LKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 208 ------------------MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249
V +E S D L +WD+ T Q
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 250 TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVE 309
+ H V Y+ + + + D V ++D T LH L HT V+ ++
Sbjct: 129 CLHVLMGHVAAVRC---VQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQ 184
Query: 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369
+D H + S + D + VWD+ + + GH++ S
Sbjct: 185 FDGIH---VVSGSLDTSIRVWDVE--------------TGNCIHTLTGHQSLTSGMELKD 227
Query: 370 NDPWVISSVADDNTVQVWQM 389
N ++ S D+TV++W +
Sbjct: 228 N---ILVSGNADSTVKIWDI 244
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 5e-07
Identities = 41/249 (16%), Positives = 83/249 (33%), Gaps = 30/249 (12%)
Query: 141 YVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALA 200
+ + + + + + + E +VSGS D + +WD+
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKE 260
V+ V + S D + +WD T ++ H
Sbjct: 129 CLHVLMGHVAA---------VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320
V L F+ + + + S DT++ ++D+ +H L+ H +E N L S
Sbjct: 180 VYSLQFDGIH---VVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKDNI---LVS 232
Query: 321 SADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD 380
D + +WD+ L + G S + + + + + +D
Sbjct: 233 GNADSTVKIWDIKTGQC--------------LQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 381 DNTVQVWQM 389
D TV++W +
Sbjct: 279 DGTVKLWDL 287
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 3e-12
Identities = 37/253 (14%), Positives = 77/253 (30%), Gaps = 15/253 (5%)
Query: 135 TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194
T S +D D + + + +
Sbjct: 55 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 114
Query: 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV 254
A+ + + V+ ++ SA D + +W+ T + + +
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314
H++ + L + ++ + SSD T+ L+D+ L V
Sbjct: 175 NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRFD 227
Query: 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWV 374
+ S A D ++ VWDL D + L + H ++ + D +
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPR-----APAGTLCLRTLVEHSGRVFRLQF---DEFQ 279
Query: 375 ISSVADDNTVQVW 387
I S + D+T+ +W
Sbjct: 280 IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 3e-11
Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 23/166 (13%)
Query: 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGS 233
F + Y+VS S D I +W+ S + ++ ++ + L S
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG---------IACLQYRDRLVVS 193
Query: 234 AGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKM-- 291
D + +WD+ + ++ HE+ V ++ + + + D + ++D+
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYDGKIKVWDLVAALD 250
Query: 292 ------TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
T+ L L H+ VF++++D + SS+ D +++WD
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
G++ +++ +VSGS DN I LWD+ A +V++ +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV---------RCIRFDNK 229
Query: 230 LFGSAGDDCQLMIWDLRTNQTQ---------QRVKAHEKEVNYLSFNPYNEWVLATASSD 280
S D ++ +WDL + + H V L F+ + + ++S D
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHD 286
Query: 281 TTVALFD 287
T+ ++D
Sbjct: 287 DTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLR-LKGHDKEGYGLS 173
+G RC+ + + ++ V+D + + LR L H + L
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274
Query: 174 WSPFKEGYLVSGSHDNKICLWD 195
+ F +VS SHD+ I +WD
Sbjct: 275 FDEF---QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.004
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
+H V + + ++ S D + IWD T + ++ + H V L ++
Sbjct: 8 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 268 PYNEW 272
Sbjct: 65 ERVII 69
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 5e-12
Identities = 29/265 (10%), Positives = 81/265 (30%), Gaps = 47/265 (17%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHE------ 215
K HD + + +S + VS S D + +WD L + D + + H+
Sbjct: 10 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV-- 273
V++ + L + L+ + + ++V + ++ ++ W
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 274 ------------LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW----------- 310
L T ++ + L+ + +++
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 311 ----DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS 366
D + ++A+ ++ + + +L+ + E S + I
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVK 238
Query: 367 WNKNDPWVISSVADDNTVQVWQMTD 391
++ +++ D N+ + +
Sbjct: 239 FS-PQGSLLAIAHDSNSFGCITLYE 262
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 9e-09
Identities = 30/212 (14%), Positives = 72/212 (33%), Gaps = 30/212 (14%)
Query: 205 IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-------- 256
I + +AH++ + VS + S D L +WD + +
Sbjct: 4 IATANAGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60
Query: 257 ----HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK---------MTVPLHILSSHTE 303
H + + + + ++AT S + + + + + L
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 304 EVFQVEWDPNHETV----LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHK 359
+ ++W +++ + L ++ +W + DE L P L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 360 AKISDF--SWNKNDPWVISSVADDNTVQVWQM 389
S F S + ++ +I++ ++ TVQ+ ++
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNGTVQISEL 212
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 21/202 (10%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ + S G + +G ++ + + ++S L ++ H + + + V
Sbjct: 180 PMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237
Query: 222 SWHLKNENLFGSAGDDCQLMIW----------------DLRTNQTQQRVKAHEKEVNYLS 265
+ +L A D ++Q AH V LS
Sbjct: 238 KFS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR 325
FN E + +A D + +D++ + L+ H +++ E + S A+
Sbjct: 297 FNDSGETL-CSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 326 RLMVWDLNRIGDEQLELDAEDG 347
V L + + D +
Sbjct: 355 VFDVKFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ +H ++F V + S + D L VWD + +E + + H
Sbjct: 8 NAGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
H + + + ++++ + + +++T
Sbjct: 65 --HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 26/259 (10%), Positives = 73/259 (28%), Gaps = 35/259 (13%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H + F+ + + S + + ++ + K + + + + W
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 225 LK--------NENLFGSAGDDCQLMIWDL------------------RTNQTQQRVKAHE 258
LK + + IW T +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEE-----VFQVEWDPN 313
+ + + ++AT ++ TV + ++ + + S H+ + V++ P
Sbjct: 185 QFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 314 HETVLASSADDRRLMVWDLNRIGDEQL-ELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372
+ + + + E++ L + H + + S+N +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 373 WVISSVADDNTVQVWQMTD 391
+ S D ++ W +
Sbjct: 303 TLCS-AGWDGKLRFWDVKT 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 3e-08
Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 19/235 (8%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ + P + L+ S D + ++ A++ + ++ +
Sbjct: 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCC 62
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
++ + +++ DL + + Q + +E + Y + L AS D
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 282 TVALFDMRKM----TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGD 337
+ + D R ++ S++T+ ++ + + L ++ ++ + L
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL--- 179
Query: 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392
G K +I D + + + + D V V D
Sbjct: 180 --------CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 12/133 (9%)
Query: 173 SWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY---------EAHESVVEDVSW 223
+ P ++ S D ++ + D + V + +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 224 HLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTV 283
+AG D + W+L+T + + E + + ++ +L A+SD T
Sbjct: 260 S-PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIAC-SDNILCLATSDDTF 316
Query: 284 ALFDMRKMTVPLH 296
T+ L+
Sbjct: 317 KTNAAIDQTIELN 329
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 295 LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354
+ I + + + ++ P+ L ++ D L V+ + L
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDI-----------QAKNVDLLQ 51
Query: 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+K + ++ N I + +
Sbjct: 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.2 bits (123), Expect = 5e-08
Identities = 22/189 (11%), Positives = 61/189 (32%), Gaps = 4/189 (2%)
Query: 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVKAHEKEVNYLSFNPYNEWVLA 275
+ +W+ K+ ++ ++ I++ N+ Q +K H +V + + P + +
Sbjct: 10 ISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-IV 67
Query: 276 TASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335
T +D ++ ++ T ++ + +E A + R + + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 336 GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395
D + + + S H + + + + I S + T +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 396 DDDDFLATT 404
L
Sbjct: 188 MPFGELMFE 196
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 11/168 (6%)
Query: 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNEN 229
+W+ + +++++ +++ S +V H + H V V W + N
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQV----HELKEHNGQVTGVDWA-PDSN 64
Query: 230 LFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVA----L 285
+ G D +W L+ + + S + V
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 286 FDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
V HI V ++W PN + A S D + ++
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAY 171
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358
S E + W+ + T +A ++ + +++ + H
Sbjct: 4 SFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEK------------SGNKWVQVHELKEH 50
Query: 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
+++ W + +++ D VW +
Sbjct: 51 NGQVTGVDWAPDSNRIVTC-GTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 22/186 (11%), Positives = 48/186 (25%), Gaps = 9/186 (4%)
Query: 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188
+ ++ EV++++ + Q LK H+ + G+ W+P +V+ D
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVH------ELKEHNGQVTGVDWAP-DSNRIVTCGTD 72
Query: 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTN 248
+W + + + + A V +
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQENDW 130
Query: 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQV 308
+ +K + N +LA S D +F V +
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 190
Query: 309 EWDPNH 314
Sbjct: 191 GELMFE 196
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 30/230 (13%), Positives = 58/230 (25%), Gaps = 29/230 (12%)
Query: 174 WSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDA------------MHVYEAHESVVEDV 221
L +GS D K ++ ++ M + V V
Sbjct: 148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 207
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+ N + D + + D + + + ++F + V A D
Sbjct: 208 CFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV--AAGHDC 264
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341
LF S+ + F D ++ R D +
Sbjct: 265 FPVLFTYD---------SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE---- 311
Query: 342 LDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391
+ L H ++IS S K + D + +W +
Sbjct: 312 -GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 8e-04
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
+ L+ + E LV+ HD L+ + A K+ + +S ++
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS-AAGKLSFGGRLDVPKQSSQRGLTAR 298
Query: 225 LKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP---YNEWVLATASSDT 281
+ +NL D + H+ V+ +S T D
Sbjct: 299 ERFQNL------DKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 351
Query: 282 TVALFDMRKM 291
++++D+R +
Sbjct: 352 GMSIWDVRSL 361
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 0.002
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW---HLKNENLFGSA 234
K+ + + D A ++ + H++ V +S + F +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347
Query: 235 GDDCQLMIWDLRTNQ 249
G D + IWD+R+ +
Sbjct: 348 GMDGGMSIWDVRSLE 362
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 22/243 (9%), Positives = 60/243 (24%), Gaps = 30/243 (12%)
Query: 171 GLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENL 230
G + E Y++ ++ N + + D +A D V + + + N
Sbjct: 1 GPALKAGHE-YMIVTNYPNNLHVVD---VASDTVYKSCVM--PDKFGPGTAMMAPDNRTA 54
Query: 231 FGSAGDDCQLMIWDLRTNQTQQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVA 284
+ + DL T + + + + +P + V AT + +
Sbjct: 55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 114
Query: 285 LFD--MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI-----GD 337
+ + P ++ ++ D + G
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK 174
Query: 338 EQLELDAEDGPPELLFSHGGHKA-----------KISDFSWNKNDPWVISSVADDNTVQV 386
+ L + + + + + K+D ++
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234
Query: 387 WQM 389
+
Sbjct: 235 VDL 237
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 10/134 (7%)
Query: 264 LSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323
+ +E+ + + + + D+ TV + P++ T +
Sbjct: 2 PALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 324 DRRLMVWDLNR------IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISS 377
+ DL+ + + S G + + N
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV---NPTQRLNDHY 117
Query: 378 VADDNTVQVWQMTD 391
V ++V+ D
Sbjct: 118 VVKPPRLEVFSTAD 131
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 21/247 (8%), Positives = 51/247 (20%), Gaps = 21/247 (8%)
Query: 164 GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSW 223
+P V +H I D+ + V + +
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96
Query: 224 HLKNENLFGSAGDD-----------CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272
+ ++ + +L ++ + V+ ++
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 273 VLATASSDTTVALFDMRKMTVPLHI--------LSSHTEEVFQVEWDPNHETVLASSADD 324
L A D K TV L + + + + + ++L + A
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTV 384
+ + DP I N +
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--VLNRL 274
Query: 385 QVWQMTD 391
+ +
Sbjct: 275 AKYDLKQ 281
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 21/233 (9%), Positives = 55/233 (23%), Gaps = 14/233 (6%)
Query: 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177
+ + + + + Y ++
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 189
Query: 178 KEGYLVSGSHDNKICLWDVSALAQDKVIDA-MHVYEAHESVVEDVSWHLKNENLFGSAGD 236
L S+ + D L + + V ++ D
Sbjct: 190 -SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 237 DCQLMIWDLRTNQTQQRVK---AHEKEVNYLSFNPYNE--WVLATASSDTTVALFDMRKM 291
+ N + E + S + E A + +D++
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308
Query: 292 TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ-LELD 343
++ + + + +T + DD ++ + L + DE+ +E D
Sbjct: 309 K-----VTEVKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 214 HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273
SV+ + + +N + DD + ++D + ++ H+ V L + +
Sbjct: 12 MTSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--I 66
Query: 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
L + S+D TV ++D++K ++ + + + + + D L VW L
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 334 R 334
+
Sbjct: 127 K 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 2e-06
Identities = 20/212 (9%), Positives = 59/212 (27%), Gaps = 3/212 (1%)
Query: 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181
+ P VG D L + + S +
Sbjct: 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 204
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+ + S ++ D + + L +
Sbjct: 205 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGS 264
Query: 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301
I N ++ H ++ ++ ++ +L + S+ ++++R + +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKD 323
Query: 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
++++ V + T++A+ D + + L+
Sbjct: 324 ADQIWSVNFKGK--TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 4e-06
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 162 LKGHDKEGYG-LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220
L+GH L + Y+++G+ D I ++D + H+ V
Sbjct: 8 LRGHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKF------LLQLSGHDGGVWA 58
Query: 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD 280
+ + L + D + + T + N + T S D
Sbjct: 59 LKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 281 TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETV 317
T+ ++ + K + H + + N V
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 15/195 (7%)
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
C+ + N V T + V+D + +L GHD + L ++ G L
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLL--------QLSGHDGGVWALKYAH--GGIL 67
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242
VSGS D + +WD K + +V KN + D L +
Sbjct: 68 VSGSTDRTVRVWD-----IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 243 WDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT 302
W L + N + + + + +T
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182
Query: 303 EEVFQVEWDPNHETV 317
V+ V +
Sbjct: 183 LIVWDVAQMKCLYIL 197
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (117), Expect = 2e-07
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLH 296
++ ++ + + + E ++AT S DT + ++ +++ +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331
L++H + V + W+ L SS D + W+
Sbjct: 253 ALNAHKDGVNNLLWETPST--LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 1e-05
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197
+Y + + + G + +E + +GS D I ++ V
Sbjct: 186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245
Query: 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWD 244
+ + AH+ V ++ W + S+G D + W+
Sbjct: 246 RPMK-----IIKALNAHKDGVNNLLWE--TPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 3e-05
Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 18/244 (7%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
+ GH+K L+ +P L+SGS+D +I W S++ QD + + + +
Sbjct: 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNY--------LSFNPYNEWV 273
SW + + + N V ++ ++ + N
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 123
Query: 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
A + S VA+ T+ + LS + ++ S + + D+
Sbjct: 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183
Query: 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK-----NDPWVISSVADDNTVQVWQ 388
E F A + + ++++ + D + ++
Sbjct: 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 243
Query: 389 MTDS 392
+
Sbjct: 244 VKRP 247
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSF 266
+ + + + E+L + D + I+ ++ + AH+ VN L +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266
Query: 267 NPYNEWVLATASSDTTVALFD 287
+ L ++ +D + ++
Sbjct: 267 ETPST--LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 6e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196
++++ + + + L H L W LVS D I W+V
Sbjct: 239 IFIYSVKRPMKIIK-------ALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 286
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 16/228 (7%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
Y+++ + +K+ + D +A DKVI + + L
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITI----ADAGPTPMVPMVAPGGRIAYATVNKSESL 58
Query: 241 MIWDLRTNQTQQRVKAHE-----KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+ DL T +T R+ K + + +P + LA S + L +
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRV 117
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI------GDEQLELDAEDGPP 349
+ + T + P T+LA + D +L + G + +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177
Query: 350 ELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397
E S ++ D + + D
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH 224
H+ L ++ + VS DN + W A S V
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-------KESSSVLSCDIS 315
Query: 225 LKNENLFGSAGDDCQLMIWDL 245
++ + D + ++++
Sbjct: 316 -VDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
+ HES V + + F S G D L W + + K V +
Sbjct: 258 KYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDIS 315
Query: 268 PYNEWVLATASSDTTVALFD 287
+++ + T S D +++
Sbjct: 316 VDDKY-IVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 10/95 (10%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI 297
+ + ++ HE V L F +W + D + +
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQS 303
Query: 298 LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332
+ V + + + + + + D++ V+++
Sbjct: 304 --KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 21/181 (11%), Positives = 49/181 (27%), Gaps = 21/181 (11%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
+ + + + G D + WD Q + ++ L +
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHDFTSQIFSLGYC 233
Query: 268 PYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRL 327
P EW+ S + + L H V +++ + S+ D L
Sbjct: 234 PTGEWLAVGMESSNV---EVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLL 289
Query: 328 MVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
W P + + + +D ++++ + D V+
Sbjct: 290 NAWRT---------------PYGASIFQSKESSSVLSCDISVDDKYIVTG-SGDKKATVY 333
Query: 388 Q 388
+
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.004
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 160 LRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196
+ S + Y+V+GS D K +++V
Sbjct: 300 IFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 26/255 (10%), Positives = 59/255 (23%), Gaps = 17/255 (6%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199
V VFD D PD + + L + V
Sbjct: 98 VEVFD-PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156
Query: 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK 259
+ D++ + + H +L S + Q A
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNC 212
Query: 260 EVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLA 319
N Y ++ +S T+ + + + ++A
Sbjct: 213 SSQAAQAN-YPGMLVWAVASSILQGDIPAAGATM-KAAIDGNESGRKADNFRSAGFQMVA 270
Query: 320 SSADDRRLMVWDLNRI------GDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKND-P 372
+ +M+ + + + A G S+G ++
Sbjct: 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD---SDAIIAAQDGAS 327
Query: 373 WVISSVADDNTVQVW 387
++ A + ++
Sbjct: 328 DNYANSAGTEVLDIY 342
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.7 bits (107), Expect = 6e-06
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 10/195 (5%)
Query: 202 DKVIDAMHVYEAHESVVEDVSWHLKNENLFG-SAGDDCQLMIWDLRTNQTQQRVKAHEKE 260
++ ++ V E + L NLF + D Q+ + D + + + +
Sbjct: 5 PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-A 63
Query: 261 VNYLSFNPYNEWVLATASSDTTVALFDM----RKMTVPLHILSSHTEEVFQVEWDPNHET 316
V+ + + L D + + D+ + I
Sbjct: 64 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122
Query: 317 VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376
+A + + + D + +Q+ + A I + P I
Sbjct: 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI---IASHEHPEFIV 179
Query: 377 SVADDNTVQVWQMTD 391
+V + V + D
Sbjct: 180 NVKETGKVLLVNYKD 194
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 7e-06
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 3/128 (2%)
Query: 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267
+ S V DV + + + G D ++ +D ++ + + ++ ++ V F
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 268 P--YNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEVFQVEWDPNHETVLASSADD 324
+ AT +D T+ ++D+ V L QV + S + D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 325 RRLMVWDL 332
L ++L
Sbjct: 318 GTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 1e-05
Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 6/169 (3%)
Query: 122 RCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGY 181
R S D + +SP +
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
+++ D KI +D + + + + F + G D +
Sbjct: 221 VITVGSDRKISCFDG----KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276
Query: 242 IWDLRTNQTQQRVKAHEKEV--NYLSFNPYNEWVLATASSDTTVALFDM 288
+WD+ T++ Q+ ++++ + + + S D T+ +++
Sbjct: 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 3e-05
Identities = 34/285 (11%), Positives = 74/285 (25%), Gaps = 64/285 (22%)
Query: 157 DPDLRLKGHDKEG-YGLSWSPFKEG-YLVSGSHDNKICLWDVSALAQDKVIDAMH--VYE 212
P ++ GH + +SP K YL SG K+ +W + + ++ ++
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 213 AHESVVEDVSWHLKN-ENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271
+ D+SW + G D + + + V H + +N
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 172
Query: 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE---------------- 315
T D +V + + H + F + + + +
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232
Query: 316 -------------------------------TVLASSADDRRLMVWDLNRIGDEQLELDA 344
A+ D + VWD+
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV------------ 280
Query: 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
++ + I S++ D T+ +++
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 20/171 (11%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWH-LKNENL 230
LS+ P + D V + SVV V + +K
Sbjct: 23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV---VQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 231 FGSAGDDCQLMIWDLRTNQTQQRV--------KAHEKEVNYLSFNPYNEWVLATASSDTT 282
S + ++++W ++ V + ++ +S++ +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 283 VALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333
+F L +S H++ + + + DD ++ +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 7e-06
Identities = 13/103 (12%), Positives = 35/103 (33%)
Query: 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245
D I L++ + V + + S + SA D + IW++
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267
Query: 246 RTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288
T + ++ + + + + + L + S++ + +
Sbjct: 268 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 6/123 (4%)
Query: 123 CMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL 182
+ P+ ++ + + + + D +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242
S S D I +W+V+ L +K I E + W + S + +
Sbjct: 254 ASASADKTIKIWNVATLKVEKTIPVGT---RIEDQQLGIIWT---KQALVSISANGFINF 307
Query: 243 WDL 245
+
Sbjct: 308 VNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.002
Identities = 9/89 (10%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 246 RTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMR--KMTVPLHILSSHTE 303
+ + + +A+AS+D T+ ++++ K+ + + + +
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 304 EVFQVEWDPNHETVLASSADDRRLMVWDL 332
+ + W L S + + + +
Sbjct: 285 QQLGIIWTKQA---LVSISANGFINFVNP 310
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (106), Expect = 8e-06
Identities = 29/224 (12%), Positives = 69/224 (30%), Gaps = 16/224 (7%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
+ V+ +I L D + ++ + A + G D ++
Sbjct: 34 FSVTLRDAGQIALIDG---STYEIKTVLDTGYAVHISRLS-----ASGRYLFVIGRDGKV 85
Query: 241 MIWDLRTNQTQQ--RVKA---HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL 295
+ DL + +K +++ +A A + D + P
Sbjct: 86 NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PK 144
Query: 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH 355
I S+ + E+ P ++ R + ++ G + L +D D L +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG-KILLVDYTD-LNNLKTTE 202
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDDDD 399
+ + D + + + I++ N + V + +D
Sbjct: 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 1e-05
Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 7/153 (4%)
Query: 162 LKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDV 221
GH+K LS S + L S + I WD+S ++V + H +++ +
Sbjct: 8 RYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVF-----PDVHATMITGI 61
Query: 222 SWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281
+LF + DD ++ + + A++ L + +A A+
Sbjct: 62 KTT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314
+A++ K+T +S + +
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 153
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 6e-05
Identities = 13/140 (9%), Positives = 38/140 (27%), Gaps = 1/140 (0%)
Query: 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310
Q H K + LS + + L +A ++ + +D+ H + ++
Sbjct: 5 DQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370
+ S D +++ + + + + P L ++ +
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 371 DPWVISSVADDNTVQVWQMT 390
+ +
Sbjct: 124 IYSHGKLTEVPISYNSSCVA 143
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 3e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 181 YLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL 240
L +GS DN + +W+++ + +I S V V W NE SAG D +
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPII---IKGAHAMSSVNSVIWL--NETTIVSAGQDSNI 292
Query: 241 MIWDL 245
W++
Sbjct: 293 KFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.001
Identities = 17/147 (11%), Positives = 35/147 (23%), Gaps = 2/147 (1%)
Query: 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246
+ + + + +
Sbjct: 152 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211
Query: 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT-VPLHILSSHTEEV 305
+ LAT S D +V +++M K + P+ I +H
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 306 FQVEWDPNHETVLASSADDRRLMVWDL 332
N ET + S+ D + W++
Sbjct: 272 VNSVIWLN-ETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-KAHEKEVNYLSFN 267
V H + +S + SA + + WD+ T + + H + +
Sbjct: 6 QVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 268 PYNEW 272
+
Sbjct: 65 SKGDL 69
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 30/257 (11%), Positives = 66/257 (25%), Gaps = 17/257 (6%)
Query: 140 VYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199
V VFD + R K S + + D+
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 200 AQDKVID-AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE 258
A +++D + + + G + I +
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL--- 196
Query: 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVL 318
+N+ +++ ++ + + L + + TE W P +
Sbjct: 197 --INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 319 ASSADDRRLMVWD-------LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN- 370
A R+ + + LDA+ G F G I + +++
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---IDSINVSQDE 311
Query: 371 DPWVISSVADDNTVQVW 387
P + + D T+ +
Sbjct: 312 KPLLYALSTGDKTLYIH 328
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.001
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 233 SAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292
+ + + + D+ +N+ + +P V + V++ D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 293 VPLHILSSHTEEVFQVEWDPNH 314
V + + + + V D
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQ 87
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 37.2 bits (86), Expect = 0.003
Identities = 22/212 (10%), Positives = 57/212 (26%), Gaps = 28/212 (13%)
Query: 182 LVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLM 241
SG H ++ + V ++ + I +V A + + S + + GD
Sbjct: 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGD----- 68
Query: 242 IWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSH 301
H ++ +++ ++T VA + M +
Sbjct: 69 --------------CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN 114
Query: 302 TEEVFQVEWDPNHETVLASSADDRRL------MVWDLNRIGDEQLELDAEDGPPELLFSH 355
+ + + +T + + + L+ +DAE
Sbjct: 115 VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV 174
Query: 356 GGHKAKISDFSWNKNDPWVISSVADDNTVQVW 387
G + + + + S+ +
Sbjct: 175 DG---NLDNTDADYTGKYATSTCYNSERAVDL 203
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (83), Expect = 0.003
Identities = 20/217 (9%), Positives = 69/217 (31%), Gaps = 14/217 (6%)
Query: 183 VSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242
++ +I +W+++ + + V+ + L+ + +++
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVV----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 243 WDLRTNQ---TQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD-MRKMTVPLHIL 298
+ + + T A + ++S + ++V + + V++ + V + +
Sbjct: 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
Query: 299 SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE------LDAEDGPPELL 352
+ P++ T+ + R+ ++ ++ G + GP ++
Sbjct: 124 VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 183
Query: 353 FSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389
F A + + D W + +
Sbjct: 184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 220
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 406 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.9 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.7 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.56 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.49 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.35 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.33 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.31 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.22 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.17 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.02 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.01 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.92 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.87 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.85 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.72 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.65 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.61 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.34 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.28 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.17 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.15 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.96 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.54 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.51 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.99 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.46 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.33 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.4 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.17 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.76 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.39 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.39 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.05 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.96 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 92.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.02 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 91.37 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.24 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.78 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.38 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.3 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.21 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.39 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.22 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.01 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.65 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.27 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.93 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 81.37 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 80.11 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.7e-37 Score=274.65 Aligned_cols=285 Identities=16% Similarity=0.222 Sum_probs=231.0
Q ss_pred CCCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCC
Q 015484 37 EWPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDG 116 (406)
Q Consensus 37 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 116 (406)
.-+..++.|.|+. ..++.|. ++.|.||++.-+.. ...+......+|.+
T Consensus 51 ~~~V~~v~fs~~g------------~~latg~------dg~V~iWd~~~~~~--------------~~~~~~~~~~~h~~ 98 (337)
T d1gxra_ 51 GEVVCAVTISNPT------------RHVYTGG------KGCVKVWDISHPGN--------------KSPVSQLDCLNRDN 98 (337)
T ss_dssp SSCCCEEEECSSS------------SEEEEEC------BSEEEEEETTSTTC--------------CSCSEEEECSCTTS
T ss_pred CCcEEEEEECCCC------------CEEEEEE------CCEEEEEEccCCcc--------------cceeEEeeecCCCC
Confidence 3467778887632 1344442 24688886552200 12234455568999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|++++|+|++ .+|++|+.||.|++||+.... ......+..|...+.+++|+|++. ++++++.|+.|++|++
T Consensus 99 ~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~ 170 (337)
T d1gxra_ 99 YIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPT------PRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDL 170 (337)
T ss_dssp BEEEEEECTTS-SEEEEEESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cEEEEEEcCCC-CEEEEeecccccccccccccc------cccccccccccccccccccccccc-cccccccccccccccc
Confidence 99999999999 689999999999999988632 233566788999999999999888 9999999999999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
.++.. ......|...|.+++|++ ++..+++++.||.+++||+++++.+..+. +...|.+++|+|++. +|++
T Consensus 171 ~~~~~------~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~-~l~~ 241 (337)
T d1gxra_ 171 HNQTL------VRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGE-WLAV 241 (337)
T ss_dssp TTTEE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSS-EEEE
T ss_pred ccccc------cccccccccccccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEccccc-ccce
Confidence 87532 345567889999999998 67888999999999999999988776664 788999999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEec
Q 015484 277 ASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHG 356 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (406)
|+.|+.|++||++... ......|...|++++|+|+++ +|++++.||.|++||+... ..+...
T Consensus 242 ~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~--------------~~~~~~- 303 (337)
T d1gxra_ 242 GMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG--------------ASIFQS- 303 (337)
T ss_dssp EETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC--------------CEEEEE-
T ss_pred eccccccccccccccc--cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCC--------------CEEEEc-
Confidence 9999999999998755 456778999999999999997 6999999999999999862 333333
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.|...|.+++|+|+++ +|++|+.||.|+|||+
T Consensus 304 ~~~~~v~~~~~s~d~~-~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEE
Confidence 4778999999999999 6899999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-37 Score=276.93 Aligned_cols=249 Identities=18% Similarity=0.290 Sum_probs=210.6
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|++++|+|++ .+||+|+.||+|+|||+.+. .....+..|...|.+++|+|++. ++++|+.|+.
T Consensus 51 L~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~~ 120 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNI 120 (340)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTT--------EEEEEEECSCSCEEEEEECTTSS-EEEEEETTCC
T ss_pred ECCCCCCEEEEEECCCC-CEEEEEECCCceeeeecccc--------eeEEEEecccccEEeeEeeccce-eeeeecccce
Confidence 44799999999999998 68999999999999999873 33677889999999999999998 9999999999
Q ss_pred EEEEeCCCccCCcee---------------------------------------eeeeeeeccCccEEEEEeeCCCCCEE
Q 015484 191 ICLWDVSALAQDKVI---------------------------------------DAMHVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 191 i~iwd~~~~~~~~~~---------------------------------------~~~~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
+++|+.......... ........+...+....+.+ ...++
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 199 (340)
T d1tbga_ 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLF 199 (340)
T ss_dssp EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-cccee
Confidence 999997654221100 00111223445566777776 67889
Q ss_pred EEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE--ecCCCCCeEEEE
Q 015484 232 GSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI--LSSHTEEVFQVE 309 (406)
Q Consensus 232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~i~ 309 (406)
++++.|+.|++||+++++.+..+.+|...|++++|+|++. +|++|+.||.|++||++.... +.. ...+...|.+++
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEE
T ss_pred EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccccc-ccccccccccCceEEEE
Confidence 9999999999999999999999999999999999999998 999999999999999997654 333 345677899999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 310 WDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 310 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
|+|+++ +|++|+.||.|++||+.+ ..++..+.+|...|++++|+|+++ +|+||+.||.|+|||
T Consensus 278 ~s~~~~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~H~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGR-LLLAGYDDFNCNVWDALK--------------ADRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSC-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred ECCCCC-EEEEEECCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEeCCCC-EEEEEccCCEEEEeC
Confidence 999997 699999999999999986 467788899999999999999999 588999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-37 Score=273.47 Aligned_cols=246 Identities=13% Similarity=0.213 Sum_probs=205.0
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC--C
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH--D 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--d 188 (406)
..+|.+.|++++|+|++ .+||+|+.||+|+||++.... ......+..|..+|.+++|+|++. +|++++. +
T Consensus 54 ~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~ 125 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTT------HILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRE 125 (311)
T ss_dssp ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTT------CCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSS
T ss_pred EcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeeccc------cccccccccccCcccccccccccc-cccccccccc
Confidence 45899999999999998 689999999999999998842 223456788999999999999988 8888875 4
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
..+++|++++++.. ..+.+|...|++++|+|++..+|++|+.||.|++||+++++....+..|...|+++.|+|
T Consensus 126 ~~~~v~~~~~~~~~------~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p 199 (311)
T d1nr0a1 126 RFGHVFLFDTGTSN------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199 (311)
T ss_dssp CSEEEEETTTCCBC------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred cccccccccccccc------ccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc
Confidence 56999999876432 445678999999999997666789999999999999999998888889999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCcEE-------ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPLHI-------LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE 341 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 341 (406)
+++ +|++++.|+.|++||++.... +.. ..+|...|++++|+|+++ +|++|+.||.|+|||+++
T Consensus 200 ~~~-~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t------- 269 (311)
T d1nr0a1 200 DGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVAT------- 269 (311)
T ss_dssp TSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-------
T ss_pred ccc-ccccccccccccccccccccc-cccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCC-------
Confidence 998 999999999999999987543 332 346889999999999997 699999999999999986
Q ss_pred ccccCCCCeeEEEecCCC---CCeeeEEeCCCCCcEEEEEeCCCcEEEEeCC
Q 015484 342 LDAEDGPPELLFSHGGHK---AKISDFSWNKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 342 ~~~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
.+++..+..|. ..+.++.|++ . .|++++.||.|++||++
T Consensus 270 -------~~~~~~l~~~~~~~~~~~~~~~~~--~-~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 270 -------LKVEKTIPVGTRIEDQQLGIIWTK--Q-ALVSISANGFINFVNPE 311 (311)
T ss_dssp -------TEEEEEEECCSSGGGCEEEEEECS--S-CEEEEETTCCEEEEETT
T ss_pred -------CcEEEEEECCCCccceEEEEEecC--C-EEEEEECCCEEEEEeCC
Confidence 35555555443 2445566654 4 47888999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-37 Score=274.85 Aligned_cols=259 Identities=16% Similarity=0.200 Sum_probs=218.4
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEE
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 184 (406)
..+.+..++|...|++++|+|++ .+||+|+ ||.|+|||+....... ........+|.+.|.+++|+|++. +|++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~---~~~~~~~~~h~~~I~~v~~s~dg~-~l~s 114 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKS---PVSQLDCLNRDNYIRSCKLLPDGC-TLIV 114 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCS---CSEEEECSCTTSBEEEEEECTTSS-EEEE
T ss_pred CceEEEECCCCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccc---eeEEeeecCCCCcEEEEEEcCCCC-EEEE
Confidence 45667788999999999999999 6899987 8999999998743211 111233457899999999999998 9999
Q ss_pred ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEE
Q 015484 185 GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYL 264 (406)
Q Consensus 185 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i 264 (406)
|+.||.|++||+..... .....+..|...+.+++|+| ++.++++++.|+.|++||+++++.......|...|.++
T Consensus 115 ~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l 189 (337)
T d1gxra_ 115 GGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189 (337)
T ss_dssp EESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred eeccccccccccccccc----cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876432 23355667889999999998 78899999999999999999998888888899999999
Q ss_pred EecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccc
Q 015484 265 SFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|++++. .+++++.|+.|++||+++... +..+ .|...|.+++|+|+++ +|++++.||.+++||++..
T Consensus 190 ~~s~~~~-~~~~~~~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~--------- 256 (337)
T d1gxra_ 190 DISNDGT-KLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP--------- 256 (337)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS---------
T ss_pred ccccccc-cccccccccccccccccccee-eccc-ccccceEEEEEccccc-ccceecccccccccccccc---------
Confidence 9999998 899999999999999998653 4443 5789999999999997 6999999999999999862
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.......|...|++++|+|+++ +|++++.||.|++|++.++..
T Consensus 257 ------~~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 257 ------DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp ------CEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred ------ccccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCE
Confidence 2234567899999999999999 689999999999999988753
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-37 Score=270.16 Aligned_cols=244 Identities=23% Similarity=0.395 Sum_probs=205.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEec---------------
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWS--------------- 175 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--------------- 175 (406)
..+|.++|++++|+|++ .+||+|+.||+|+|||+.+. .....+.+|...|.+++|+
T Consensus 13 L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~--------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp EECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC--------CEEEEEeCCCCcEEEEeeeccccccccccccccc
Confidence 45899999999999998 68999999999999999873 2344455555555555554
Q ss_pred ---------------------------CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC
Q 015484 176 ---------------------------PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE 228 (406)
Q Consensus 176 ---------------------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~ 228 (406)
+++. .+++++.|+.+++||+.++. ....+..|...+.+++|+| ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~ 155 (317)
T d1vyhc1 84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY------CVKTFTGHREWVRMVRPNQ-DG 155 (317)
T ss_dssp CEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECT-TS
T ss_pred ccccccccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccce------eeeEEccCCCcceeeeccc-CC
Confidence 4444 67778888888888887653 2355677889999999998 78
Q ss_pred CEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCC-------------------cEEEEEeCCCcEEEEeCC
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE-------------------WVLATASSDTTVALFDMR 289 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~-------------------~~l~~~~~dg~i~vwd~~ 289 (406)
.+|++++.|+.|++|++++++....+..+...+.+++|+|++. .++++++.|+.|++||++
T Consensus 156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 8999999999999999999998888888999999999988642 268999999999999999
Q ss_pred CCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 290 KMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 290 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
++.. +..+.+|...|.+++|+|+++ +|++++.||.|+|||+.+ .+++..+.+|...|++++|+|
T Consensus 236 ~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 236 TGMC-LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKN--------------KRCMKTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp TTEE-EEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTT--------------SCCCEEEECCSSCEEEEEECS
T ss_pred CCcE-EEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcC
Confidence 8654 888999999999999999997 599999999999999986 355667789999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEe
Q 015484 370 NDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 370 ~~~~~l~s~~~dg~i~iw~ 388 (406)
+++ +|++|+.||.|+|||
T Consensus 300 ~~~-~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 300 TAP-YVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSS-CEEEEETTSEEEEEC
T ss_pred CCC-EEEEEeCCCeEEEeC
Confidence 999 588999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.1e-37 Score=270.88 Aligned_cols=255 Identities=16% Similarity=0.299 Sum_probs=211.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+.+.+..++++|++. .||.++ ++.|.+|++.+ ......+.+|...|++++|+|++. +|++|+.||+|++
T Consensus 16 ~r~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~--------~~~~~~~~~H~~~v~~~~~sp~g~-~latg~~dg~i~i 84 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGS--------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRI 84 (311)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTC--------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CCCCeEEEEEcCCCC-EEEEEe-CCEEEEEECCC--------CceeEEEcCCCCCEEEEEEeCCCC-eEeccccCceEee
Confidence 446777899999994 577664 56799999987 344677889999999999999988 9999999999999
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec--CCcEEEEECCCCcccccccccCCCeeEEEecCCCC
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD--DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
||+....... ...+..|..+|.+++|+| ++.++++++. +..+++|++++++....+.+|...|++++|+|+++
T Consensus 85 wd~~~~~~~~----~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~ 159 (311)
T d1nr0a1 85 WDTTQTTHIL----KTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159 (311)
T ss_dssp EESSSTTCCE----EEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred eeeecccccc----ccccccccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccce
Confidence 9998865321 234567899999999999 6777777765 46699999999999999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCee
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPEL 351 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (406)
.+|++|+.||.|++||+++.+. ...+..|...|+++.|+|+++ +|++++.||.|++||+.......... ..
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~-~~------ 230 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFE-DD------ 230 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECB-CT------
T ss_pred eeeccccccccccccccccccc-ccccccccccccccccCcccc-cccccccccccccccccccccccccc-cc------
Confidence 7799999999999999998654 778889999999999999997 69999999999999998743221110 00
Q ss_pred EEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 352 LFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 352 ~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.....+|...|++++|+|+++ +|++|+.||.|+|||+.++.+
T Consensus 231 ~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 231 SLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKV 272 (311)
T ss_dssp TSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE
T ss_pred ccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcE
Confidence 011246889999999999999 688999999999999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-36 Score=274.55 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=204.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
..+|+|++|+|++ .+||+|+.||.|+||+..... ......+.+|.++|.+++|+|+++ +|++|+.|++|++|
T Consensus 7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~------~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVW 78 (371)
T ss_dssp SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCC------EEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeEEEE
Confidence 4789999999999 689999999999999997632 234677899999999999999988 99999999999999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc----ccccccCCCeeEEEecCCC
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ----QRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~i~~~~~~ 270 (406)
|+..+. ......+..|...|.+++|+| +++.|++++.|+.+++|++...... .....|...|.+++|+|++
T Consensus 79 d~~~~~----~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 79 TLKGRT----WKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp EEETTE----EEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred eecccc----ccccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence 998643 223344567888999999999 6889999999999999998776542 2235678899999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCC-----------------CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 271 EWVLATASSDTTVALFDMRKMT-----------------VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
. +|++|+.|+.|++||+.... ..+.....|...|.+++|+|+++ +|++++.|+.|++||+.
T Consensus 154 ~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~ 231 (371)
T d1k8kc_ 154 V-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADAD 231 (371)
T ss_dssp S-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGG
T ss_pred c-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEEeee
Confidence 8 89999999999999986532 12445677889999999999997 69999999999999997
Q ss_pred CCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 334 RIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
. ...+..+.+|..+|.+++|+|+++ +|++ +.|+.+++|....
T Consensus 232 ~--------------~~~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 232 K--------------KMAVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTYDS 273 (371)
T ss_dssp G--------------TTEEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEEET
T ss_pred c--------------ccceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEeeC
Confidence 6 355667788999999999999997 5665 4578777766544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-35 Score=267.21 Aligned_cols=304 Identities=16% Similarity=0.178 Sum_probs=226.5
Q ss_pred CCceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEE-EeecCC
Q 015484 38 WPSLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQ-KIRVDG 116 (406)
Q Consensus 38 ~p~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~ 116 (406)
=|..++.|.|+. ..+++|+. ++.|.|+++.- +++.... ..+|.+
T Consensus 8 ~pIt~~~~s~dg------------~~la~~~~-----~~~i~iw~~~~------------------~~~~~~~~l~gH~~ 52 (371)
T d1k8kc_ 8 EPISCHAWNKDR------------TQIAICPN-----NHEVHIYEKSG------------------NKWVQVHELKEHNG 52 (371)
T ss_dssp SCCCEEEECTTS------------SEEEEECS-----SSEEEEEEEET------------------TEEEEEEEEECCSS
T ss_pred CCeEEEEECCCC------------CEEEEEeC-----CCEEEEEECCC------------------CCEEEEEEecCCCC
Confidence 478899998742 15556543 36799997762 1233333 347999
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
+|++++|+|++ .+|++|+.|++|+||++.... ..+...+.+|...|.+++|+|+++ .|++|+.|++|++|++
T Consensus 53 ~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~ 124 (371)
T d1k8kc_ 53 QVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT------WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYF 124 (371)
T ss_dssp CEEEEEEETTT-TEEEEEETTSCEEEEEEETTE------EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEE
T ss_pred CEEEEEECCCC-CEEEEEECCCeEEEEeecccc------cccccccccccccccccccccccc-cceeecccCcceeeee
Confidence 99999999998 689999999999999998632 233556678999999999999998 9999999999999998
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc------------------cccccccC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT------------------QQRVKAHE 258 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~~~ 258 (406)
....... ........|...|.+++|+| ++.+|++|+.||.|++||+..... ......|.
T Consensus 125 ~~~~~~~--~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (371)
T d1k8kc_ 125 EQENDWW--VCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 201 (371)
T ss_dssp ETTTTEE--EEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred ecccccc--cccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence 8754322 22244556888999999999 788999999999999999865431 22335678
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
..|.+++|+|+++ +|++++.|+.|++||++.... +..+..|..+|.+++|+|+++ +|+ ++.|+.+++|........
T Consensus 202 ~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~s~~fs~d~~-~la-~g~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 202 GWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESS-LVA-AGHDCFPVLFTYDSAAGK 277 (371)
T ss_dssp SCEEEEEECSSSS-EEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTE-EEE-EETTSSCEEEEEETTTTE
T ss_pred CcEEEEEeecccc-cccccccCCcceEEeeecccc-eeeeecccccceeeeecCCCC-EEE-EEcCCceEEEEeeCCCce
Confidence 8899999999998 899999999999999988654 888899999999999999985 455 455888777765442211
Q ss_pred ccccccc--------------------CC-------CCeeEEEecCCCCCeeeEEeCCCCC---cEEEEEeCCCcEEEEe
Q 015484 339 QLELDAE--------------------DG-------PPELLFSHGGHKAKISDFSWNKNDP---WVISSVADDNTVQVWQ 388 (406)
Q Consensus 339 ~~~~~~~--------------------~~-------~~~~~~~~~~h~~~v~~~~~s~~~~---~~l~s~~~dg~i~iw~ 388 (406)
....... +. ..........|.+.|+++++.+.+. ..|+|+|.||.|+||+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 1000000 00 0000011134888999999977543 3689999999999999
Q ss_pred CCC
Q 015484 389 MTD 391 (406)
Q Consensus 389 ~~~ 391 (406)
+.+
T Consensus 358 ~~~ 360 (371)
T d1k8kc_ 358 VRS 360 (371)
T ss_dssp HHH
T ss_pred CCc
Confidence 854
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-35 Score=266.75 Aligned_cols=249 Identities=20% Similarity=0.326 Sum_probs=204.2
Q ss_pred EEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 108 IAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
......|...|++++|+|++ .+|++|+.||.|++|+.... .....+.+|...|.+++|++++. .+++|+.
T Consensus 114 ~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~ 183 (388)
T d1erja_ 114 TSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGD-KLVSGSG 183 (388)
T ss_dssp -----CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred cccccCCCCCEEEEEECCCC-Ccceeccccccccccccccc--------ccccccccccccccccccccccc-ccccccc
Confidence 34455788999999999998 68999999999999999873 33667788999999999999888 9999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------cccCCC
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-------KAHEKE 260 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~ 260 (406)
++.+++||..+... .... .+.....++.+++.++.+|++++.||.|++||++++.....+ .+|...
T Consensus 184 ~~~i~~~d~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 184 DRTVRIWDLRTGQC------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp TSEEEEEETTTTEE------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred ceeeeeeecccccc------cccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC
Confidence 99999999987532 1222 344556677777778899999999999999999988765443 457889
Q ss_pred eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 261 VNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 261 v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
|++++|+|++. +|++|+.||.|++||++.... .......|...|.+++|+|+++ +|++|+.||.|++
T Consensus 257 v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~v 334 (388)
T d1erja_ 257 VYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLF 334 (388)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred EEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEE
Confidence 99999999998 999999999999999986542 1344567889999999999997 6999999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe------CCCCCcEEEEEeCCCcEEEEeCC
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW------NKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
||+.+ .+++..+.+|.+.|.++++ +|++. +|+||+.||.|+||++.
T Consensus 335 wd~~~--------------~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 335 WDKKS--------------GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK 386 (388)
T ss_dssp EETTT--------------CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred EECCC--------------CcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence 99986 4667788999999998874 67787 79999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-34 Score=263.69 Aligned_cols=274 Identities=18% Similarity=0.265 Sum_probs=205.2
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc----------CCCCCceeeeCCCCCeeEEEec
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ----------DDCDPDLRLKGHDKEGYGLSWS 175 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~l~~~ 175 (406)
..+.+.++|.+.|+|++|+|+| .+||+|+ |+.|+||++.+...... ...........|...|++++|+
T Consensus 53 ~~l~~~~~H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 53 VELHKSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred eeeEeeCCCCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC
Confidence 4556777999999999999999 6899986 89999999987543211 0111122344678889999999
Q ss_pred CCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc
Q 015484 176 PFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK 255 (406)
Q Consensus 176 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 255 (406)
|++. +|++|+.||.|++||...++. +....+|...|.+++|++ ++..+++++.++.+++||+++........
T Consensus 131 ~~~~-~l~s~~~dg~v~i~~~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 202 (388)
T d1erja_ 131 PDGK-FLATGAEDRLIRIWDIENRKI------VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202 (388)
T ss_dssp TTSS-EEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCC-cceeccccccccccccccccc------cccccccccccccccccc-ccccccccccceeeeeeeccccccccccc
Confidence 9988 999999999999999987532 355677999999999998 67888899999999999999887766665
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC------CcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEE
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV------PLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMV 329 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~i 329 (406)
.+. ...++.+.+....+|++|+.||.|++||.++... ......+|...|.+++|+|+++ +|++++.||.|++
T Consensus 203 ~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~i 280 (388)
T d1erja_ 203 IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKL 280 (388)
T ss_dssp CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred ccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEE
Confidence 444 4455556554444999999999999999987653 1223456889999999999997 6999999999999
Q ss_pred EeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 330 WDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
||+............ ...........|...|.+++|+|+++ +|++|+.||.|++||+.++..
T Consensus 281 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 281 WNLQNANNKSDSKTP--NSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp EEC-----------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCE
T ss_pred EeccCCccccccccc--cccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcE
Confidence 999875433222111 11244556678999999999999999 689999999999999988753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.8e-34 Score=252.25 Aligned_cols=254 Identities=14% Similarity=0.261 Sum_probs=193.9
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee-eCCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
....+|.+.|++++|+|++ .+||+|+.||+|++||+.+.. ....+ .+|...|++++|+|++. +++++.
T Consensus 6 ~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~--------~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~ 74 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI--------SNRVFPDVHATMITGIKTTSKGD--LFTVSW 74 (299)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------EEECSSCSCSSCEEEEEECTTSC--EEEEET
T ss_pred eEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------EEEEEcCCCCCcEEEEEeeccce--eecccc
Confidence 3456899999999999998 689999999999999998742 23334 46899999999999875 566778
Q ss_pred CCeEEEEeCCCccCCce----------eee-----------------eee-------eeccCccEEEEEeeCCCCCEEEE
Q 015484 188 DNKICLWDVSALAQDKV----------IDA-----------------MHV-------YEAHESVVEDVSWHLKNENLFGS 233 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~----------~~~-----------------~~~-------~~~~~~~i~~i~~~p~~~~~l~~ 233 (406)
|+.+++|+......... ... +.. .......+.+++|+| ++.++++
T Consensus 75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~ 153 (299)
T d1nr0a2 75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAV 153 (299)
T ss_dssp TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEE
T ss_pred eeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999765321100 000 000 011234577889998 6889999
Q ss_pred EecCCcEEEEECCCCcccc-cccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC--CcEEecCCCCCeEEEEE
Q 015484 234 AGDDCQLMIWDLRTNQTQQ-RVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--PLHILSSHTEEVFQVEW 310 (406)
Q Consensus 234 ~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~i~~ 310 (406)
++.||.|++||+++++... ....|...|++++|+|++. +|++++.|+.|++||+.+... ....+..|...|++++|
T Consensus 154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998776543 3356889999999999998 899999999999999986542 24456779999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC-CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 311 DPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG-HKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
+|+++ +|++|+.||.|++||++.... ........ +...|..+.|. +++ .|++++.|+.|++||+
T Consensus 233 s~~~~-~l~sgs~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 233 SPDNV-RLATGSLDNSVIVWNMNKPSD------------HPIIIKGAHAMSSVNSVIWL-NET-TIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTCTTS------------CCEEETTSSTTSCEEEEEEE-ETT-EEEEEETTSCEEEEEC
T ss_pred ccccc-ceEEEcCCCEEEEEECCCCCc------------ceEEEecCCCCCcEEEEEEC-CCC-EEEEEeCCCEEEEEec
Confidence 99997 699999999999999986332 22223333 34556666654 556 6889999999999998
Q ss_pred C
Q 015484 390 T 390 (406)
Q Consensus 390 ~ 390 (406)
+
T Consensus 298 ~ 298 (299)
T d1nr0a2 298 P 298 (299)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-33 Score=249.05 Aligned_cols=258 Identities=14% Similarity=0.131 Sum_probs=196.6
Q ss_pred EEEeecC-CceeEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 109 AQKIRVD-GEVNRARCMPQ-KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 109 ~~~~~h~-~~v~~i~~~p~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
....+|. ..|++++|+|. +..+||+|+.||+|+|||+................+..|..+|.+++|++++. +|++++
T Consensus 56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~ 134 (325)
T d1pgua1 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVG 134 (325)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC-ccceee
Confidence 3445664 68999999984 33689999999999999997643322111111234567899999999999998 776654
Q ss_pred --CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCe
Q 015484 187 --HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEV 261 (406)
Q Consensus 187 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v 261 (406)
.++.+.+|+.+++. .+..+.+|...|++++|+|.++.++++++.|+.+++||++..+....+ ..+...|
T Consensus 135 ~~~~~~~~~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v 208 (325)
T d1pgua1 135 EGRDNFGVFISWDSGN------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV 208 (325)
T ss_dssp CCSSCSEEEEETTTCC------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred ccccceEEEEeecccc------cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence 46789999998753 345567899999999999977777889999999999999877654443 5677889
Q ss_pred eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEc---CCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 262 NYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWD---PNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 262 ~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~---p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
++++|+|++..+|++++.||.|++||+++++. +..+.+|...+.++.|+ |+++ +|++++.|+.|+|||++.
T Consensus 209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~---- 282 (325)
T d1pgua1 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTT---- 282 (325)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTT----
T ss_pred EEeeeccccceeccccccccceeeeeeccccc-cccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCC----
Confidence 99999998655999999999999999998664 78888888777655555 5665 699999999999999986
Q ss_pred cccccccCCCCeeEEEecCCCCC--eeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 339 QLELDAEDGPPELLFSHGGHKAK--ISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
.+++..+..|... +..+++.+.+...|++++.||.|+|||+
T Consensus 283 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 283 ----------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ----------TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ----------CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 3455544444433 3444444333336889999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-32 Score=241.42 Aligned_cols=256 Identities=16% Similarity=0.279 Sum_probs=199.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCC-eEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCC-CCeEEEecCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSC-EVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFK-EGYLVSGSHDNKIC 192 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-~~~l~s~~~dg~i~ 192 (406)
+.+++++|+|++. .||.++.+. .|+.|+.... .......+.+|. ..|++++|+|.. ..+|++|+.||+|+
T Consensus 18 ~~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~~------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 18 NFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGDS------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp TCCCCCEEETTTT-EEEEEETTEEEEEECCSSCC------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCeEEEEECCCCC-EEEEEeCCCEEEEEEeCCCC------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 4678999999994 566665443 3455654442 234466777774 679999999843 23899999999999
Q ss_pred EEeCCCccCCceee--eeeeeeccCccEEEEEeeCCCCCEEEEEe--cCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 193 LWDVSALAQDKVID--AMHVYEAHESVVEDVSWHLKNENLFGSAG--DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 193 iwd~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
+||+........+. ....+..|..+|.+++|++ ++..+++++ .++.+++|+..+++.+..+.+|...|++++|+|
T Consensus 91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169 (325)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS
T ss_pred EeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeecccccccccccc
Confidence 99998765443322 1233556888999999999 566666554 477899999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCCCc--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 269 YNEWVLATASSDTTVALFDMRKMTVPL--HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 269 ~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+++.++++++.|+.+++||++..+... .....|...|.+++|+|++..+|++++.||.|++||+++
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~------------ 237 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS------------ 237 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT------------
T ss_pred cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc------------
Confidence 998778899999999999998654322 223467788999999998666899999999999999876
Q ss_pred CCCeeEEEecCCCCCeeeEEeC---CCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 347 GPPELLFSHGGHKAKISDFSWN---KNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s---~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
.+.+..+.+|...+.++.|+ |+++ +|++++.|+.|+|||+.++..
T Consensus 238 --~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 238 --GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKC 285 (325)
T ss_dssp --CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEE
T ss_pred --ccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCE
Confidence 35667777888887777666 6777 689999999999999998753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=238.57 Aligned_cols=239 Identities=13% Similarity=0.238 Sum_probs=184.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.++|++++|+| |++|+.||+|++||+.+. ..+|...|.++++++. . .+++++.|++
T Consensus 9 l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-------------~~~h~~~V~~~~~~~~-~-~~~s~s~D~~ 68 (287)
T d1pgua2 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-------------HQDHSNLIVSLDNSKA-Q-EYSSISWDDT 68 (287)
T ss_dssp ECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-------------ECCCCSCEEEEECCST-T-CCEEEETTTE
T ss_pred ECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-------------CCCCCCCEEEEEecCC-C-eEEEEeeccc
Confidence 447999999999987 899999999999998762 3579999999999874 3 6899999999
Q ss_pred EEEEeCCCccCCceee----------------------------eeeeeeccCccEEEEEeeCCCCCEEEEEecC-CcEE
Q 015484 191 ICLWDVSALAQDKVID----------------------------AMHVYEAHESVVEDVSWHLKNENLFGSAGDD-CQLM 241 (406)
Q Consensus 191 i~iwd~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~ 241 (406)
|++|++.......... ....+. +... ..++++ ++..+++++.+ +.++
T Consensus 69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~v~~~~~~~v~ 144 (287)
T d1pgua2 69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSL-SQNYVAVGLEEGNTIQ 144 (287)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEE-CSSEEEEEETTTSCEE
T ss_pred cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeec-cCcceeeeccccceee
Confidence 9999976532211100 001111 1122 234555 34556566655 5799
Q ss_pred EEECCCCcccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC------
Q 015484 242 IWDLRTNQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH------ 314 (406)
Q Consensus 242 i~d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~------ 314 (406)
+|++...+....+ ..+...+++++|+|++. +|++|+.||.|++||+.+.......+..|...|.+++|+|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 223 (287)
T d1pgua2 145 VFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223 (287)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred eeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence 9999876554444 34678899999999998 999999999999999998665444577899999999999854
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 315 ---ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 315 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
..+|++|+.|+.|+|||++.. ...+....+|...|++++|+|++. |++++.|+.|++|++
T Consensus 224 ~~~~~~l~sgs~D~~i~iw~~~~~-------------~~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 224 EIEEDLVATGSLDTNIFIYSVKRP-------------MKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 286 (287)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCT-------------TCCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred cCCCCeeEeecCCCeEEEEECCCC-------------CeEEEEeCCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence 247999999999999998762 355667789999999999999864 788999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.8e-30 Score=225.16 Aligned_cols=245 Identities=20% Similarity=0.343 Sum_probs=192.5
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
-+|...|+|++| ++ ++||+|+.||+|+|||+.+ .++...+.+|...|++++|+ +. +|++|+.||.|
T Consensus 12 ~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~--------~~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~~i 77 (293)
T d1p22a2 12 SETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT--------LECKRILTGHTGSVLCLQYD--ER-VIITGSSDSTV 77 (293)
T ss_dssp CSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS--------CCEEEEECCCSSCEEEEECC--SS-EEEEEETTSCE
T ss_pred CCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCC--------CcEEEEEecCCCCEeeeecc--cc-eeecccccccc
Confidence 357888998765 55 6899999999999999987 34578899999999999984 55 99999999999
Q ss_pred EEEeCCCccCCcee-------------------------------------eeeeeeeccCccEEEEEeeCCCCCEEEEE
Q 015484 192 CLWDVSALAQDKVI-------------------------------------DAMHVYEAHESVVEDVSWHLKNENLFGSA 234 (406)
Q Consensus 192 ~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 234 (406)
++|++..+...... .....+..|...+..+.+. ...++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~ 154 (293)
T d1p22a2 78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSA 154 (293)
T ss_dssp EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEE
T ss_pred cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec---ccccccc
Confidence 99998764221000 0112234456667666665 4567789
Q ss_pred ecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCC
Q 015484 235 GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 235 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~ 314 (406)
+.|+.|++||+++++.+..+.++...+..+.+++ . .+++++.||.|++||+++... +.....|...+..+. +++
T Consensus 155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~--~~~ 228 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIR--FDN 228 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEE--CCS
T ss_pred cCCCceeeecCCCCcEEEEEcccccccccccCCC--C-eEEEecCCCEEEEEeccccee-eeeecccceeeeecc--ccc
Confidence 9999999999999999888888888998888864 4 899999999999999998654 778888888887654 455
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEe
Q 015484 315 ETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQ 388 (406)
Q Consensus 315 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~ 388 (406)
. +|++++.||.|++||+......... .....+..+.+|.+.|++++|++ . .|+|++.||.|+|||
T Consensus 229 ~-~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~H~~~V~~v~~d~--~-~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 K-RIVSGAYDGKIKVWDLVAALDPRAP-----AGTLCLRTLVEHSGRVFRLQFDE--F-QIVSSSHDDTILIWD 293 (293)
T ss_dssp S-EEEEEETTSCEEEEEHHHHTSTTSC-----TTTTEEEEECCCSSCCCCEEECS--S-CEEECCSSSEEEEEC
T ss_pred e-EEEEEcCCCEEEEEECCCCcccccc-----CCceeeEEecCCCCCEEEEEEcC--C-EEEEEecCCEEEEeC
Confidence 4 6999999999999998753322211 12356777889999999999964 4 589999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.1e-30 Score=229.25 Aligned_cols=244 Identities=18% Similarity=0.275 Sum_probs=188.3
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCe
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNK 190 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 190 (406)
..+|.+.|.+ ++++++ ++||||+.||+|+|||+.+ .++...+.+|...|.+++|++ . +|++|+.|+.
T Consensus 12 l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~--------~~~~~~~~~h~~~V~~v~~~~--~-~l~s~s~D~~ 78 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVT--------GKCLRTLVGHTGGVWSSQMRD--N-IIISGSTDRT 78 (342)
T ss_dssp EECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTT--------CCEEEECCCCSSCEEEEEEET--T-EEEEEETTSC
T ss_pred ECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCC--------CCEEEEEeCCCCCEEEEEeCC--C-ccccceeccc
Confidence 3489999865 355666 6899999999999999987 345778899999999999986 3 8999999999
Q ss_pred EEEEeCCCccCCce------------------------------------------------------------------
Q 015484 191 ICLWDVSALAQDKV------------------------------------------------------------------ 204 (406)
Q Consensus 191 i~iwd~~~~~~~~~------------------------------------------------------------------ 204 (406)
+++|+.........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence 99999765211000
Q ss_pred --------eeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEE
Q 015484 205 --------IDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLAT 276 (406)
Q Consensus 205 --------~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~ 276 (406)
...+..+.+|...+..+.+ ++..+++++.||.|++||++.++.+..+..|...+.++++++ + +|++
T Consensus 159 i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s 232 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N-ILVS 232 (342)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--T-EEEE
T ss_pred EEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--C-EEEE
Confidence 0011222233333333333 467899999999999999999999998999999999988875 4 8999
Q ss_pred EeCCCcEEEEeCCCCCCCcEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 277 ASSDTTVALFDMRKMTVPLHILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 277 ~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
|+.||.|++||+...+. ...+. .|...+.++.++++ ++++|+.||.|+|||+++. +++.
T Consensus 233 ~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg--------------~~i~ 294 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTG--------------EFIR 294 (342)
T ss_dssp EETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTC--------------CEEE
T ss_pred EcCCCEEEEEecccccc-cccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCC--------------CEEE
Confidence 99999999999988654 44443 45667888887753 6999999999999999873 2333
Q ss_pred Ee-----cCCCCCeeeEEeCCCCCcEEEEEeCCCc----EEEEeCCCc
Q 015484 354 SH-----GGHKAKISDFSWNKNDPWVISSVADDNT----VQVWQMTDS 392 (406)
Q Consensus 354 ~~-----~~h~~~v~~~~~s~~~~~~l~s~~~dg~----i~iw~~~~~ 392 (406)
.+ .+|...|++++|+|++. ++++|+.||+ |++||++..
T Consensus 295 ~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 295 NLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred EEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCCC
Confidence 22 36778899999999998 7999999985 999998754
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.6e-29 Score=221.36 Aligned_cols=218 Identities=23% Similarity=0.381 Sum_probs=183.3
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceee-------------------------------
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVID------------------------------- 206 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------- 206 (406)
....|.+|.++|++|+|+|+++ +|+||+.||+|++||+.+++....+.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ccEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 3567999999999999999988 99999999999999998764332211
Q ss_pred -----eeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCC
Q 015484 207 -----AMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 207 -----~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg 281 (406)
....+..|...+.++.|+| ++..+++++.|+.+++||+++++....+..|...+.+++|+|++. +|++++.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~ 165 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQ 165 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred ccccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC-EEEEEeCCC
Confidence 0111223445566666666 567788999999999999999999889999999999999999998 999999999
Q ss_pred cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC-------------------CEEEEEeCCCcEEEEeCCCCCcccccc
Q 015484 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE-------------------TVLASSADDRRLMVWDLNRIGDEQLEL 342 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~-------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~ 342 (406)
.|++|++++... +..+..|...+.++.|+|+.. .++++++.|+.|++||+++
T Consensus 166 ~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-------- 236 (317)
T d1vyhc1 166 TVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-------- 236 (317)
T ss_dssp CEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT--------
T ss_pred eEEEEeecccee-eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC--------
Confidence 999999998654 778889999999999988642 2688999999999999986
Q ss_pred cccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 343 DAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 343 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
..++..+.+|...|.+++|+|+++ +|++++.||.|+|||+.++..
T Consensus 237 ------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 281 (317)
T d1vyhc1 237 ------GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRC 281 (317)
T ss_dssp ------TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCC
T ss_pred ------CcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcE
Confidence 467778889999999999999999 588999999999999987753
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.1e-30 Score=233.10 Aligned_cols=273 Identities=11% Similarity=0.154 Sum_probs=186.9
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEE------ecCCCCCeEEEe
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLS------WSPFKEGYLVSG 185 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~------~~~~~~~~l~s~ 185 (406)
-+|.+.|+++++++ .++++++.|++|+|||........ ..........|...+..+. .+.....+++++
T Consensus 11 ~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 11 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCc--ccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 37999999999875 479999999999999976533211 0111223334554433322 222222268899
Q ss_pred cCCCeEEEEeCCCccCCceeeeee----eeeccCccEEEEEeeCCC----CCEEEEEecCCcEEEEECCCCcc-------
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMH----VYEAHESVVEDVSWHLKN----ENLFGSAGDDCQLMIWDLRTNQT------- 250 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~----~~~l~~~~~dg~i~i~d~~~~~~------- 250 (406)
+.||.|++|++............. ....+...+..++|.+.. ..++++++.||.+++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 999999999987654432221100 112244567788887643 46788999999999999853321
Q ss_pred -----------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-----CcEEecCCCCCeEEEEEcCCC
Q 015484 251 -----------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV-----PLHILSSHTEEVFQVEWDPNH 314 (406)
Q Consensus 251 -----------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~h~~~v~~i~~~p~~ 314 (406)
......+...+++++|+|++ +|++|+.||.|++||+++.+. ....+.+|..+|++++|+|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 01112345668899999986 799999999999999987653 123456799999999999999
Q ss_pred CCEEEEEeCCCc---EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 315 ETVLASSADDRR---LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 315 ~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
+ +|++|+.|++ |++||+........ ...............+|...|++++|+|+++ +|+|++.|+.|+|||+.+
T Consensus 244 ~-~l~sgs~D~t~~~i~lwd~~~g~~~~~-l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 244 S-LLAIAHDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp T-EEEEEEEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT
T ss_pred c-eeeeecCCCCcceeeecccccceeeee-eccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCC
Confidence 7 6999998874 99999987443222 1112222344445568999999999999999 799999999999999998
Q ss_pred ccc
Q 015484 392 SIY 394 (406)
Q Consensus 392 ~~~ 394 (406)
+.+
T Consensus 321 g~~ 323 (393)
T d1sq9a_ 321 KER 323 (393)
T ss_dssp TEE
T ss_pred CCE
Confidence 754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.7e-29 Score=221.41 Aligned_cols=245 Identities=22% Similarity=0.353 Sum_probs=188.8
Q ss_pred EEEeecCCce-eEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC
Q 015484 109 AQKIRVDGEV-NRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 109 ~~~~~h~~~v-~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
....+|.+.| +|++| ++ ++||+|+.||+|+|||+.+. ++...+.+|.++|++++|+|+ . +|++|+.
T Consensus 6 ~tL~GH~~~vitc~~~--~~-~~l~tgs~Dg~i~vWd~~~~--------~~~~~l~~H~~~V~~l~~s~~-~-~l~s~s~ 72 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--ED-NYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHG-G-ILVSGST 72 (355)
T ss_dssp EEEECCSSSCEEEEEE--ET-TEEEEEETTTEEEEEETTTT--------EEEEEEECCSSCEEEEEEETT-T-EEEEEET
T ss_pred EEECCcCCCcEEEEEE--CC-CEEEEEeCCCeEEEEECCCC--------cEEEEEECCCCCEEEEEEcCC-C-EEEEEec
Confidence 3455898886 66665 45 68999999999999999873 447889999999999999984 4 8999999
Q ss_pred CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-------------
Q 015484 188 DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------------- 254 (406)
Q Consensus 188 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 254 (406)
||+|++|++....... ......+........+.+ +...+++++.|+.|++||+++.......
T Consensus 73 D~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d1nexb2 73 DRTVRVWDIKKGCCTH----VFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147 (355)
T ss_dssp TCCEEEEETTTTEEEE----EECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred cccccccccccccccc----cccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence 9999999998754321 111222334455566776 6788999999999999999876543221
Q ss_pred ----------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 255 ----------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 255 ----------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
..|...+. .+.+++. +++++..|+.|++||+++.+. +.....+...+.++.|+|.++ ++++++.|
T Consensus 148 ~~~~~~~~~~~~~~~~v~--~~~~~~~-~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 222 (355)
T d1nexb2 148 EENPYFVGVLRGHMASVR--TVSGHGN-IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERK-RCISASMD 222 (355)
T ss_dssp TTCTTEEEEEECCSSCEE--EEEEETT-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTT-EEEEEETT
T ss_pred ccccceeeeeeecccccc--ccccccc-eeeeecccceeeeeecccccc-eeeeeccccccccccccccce-eeeccccc
Confidence 11222232 3344566 899999999999999998654 777888899999999999997 69999999
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
+.|++||+.+ ...+..+.+|...|.+++|+++ +|++++.||.|++||+.+..
T Consensus 223 ~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 223 TTIRIWDLEN--------------GELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp SCEEEEETTT--------------CCEEEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTCC
T ss_pred ceEEeeeccc--------------cccccccccccccccccccccc---eeeeeecccccccccccccc
Confidence 9999999987 4566777899999999999864 68999999999999998764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-29 Score=225.91 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=191.0
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
+|++.|++|+|+|++ .+||+|+.||+|+|||+...... .......+|..+|.+++|+|++..+|++|+.||.|+
T Consensus 9 ~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN-----VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTE-----EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcc-----eEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 689999999999998 68999999999999999763221 112334479999999999997665899999999999
Q ss_pred EEeCCCccCCceeeeeeeeeccC-ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc----c--ccCCCeeEEE
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHE-SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----K--AHEKEVNYLS 265 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~--~~~~~v~~i~ 265 (406)
+|++....... ....+. .......+.+ +...+++++.++.+++||++.+...... . ........+.
T Consensus 83 ~w~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 83 KVDLIGSPSFQ------ALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp EECSSSSSSEE------ECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred eeecccccccc------ccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 99998764321 112222 2333334444 6888999999999999999865543322 1 1223344566
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCC--cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVP--LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD 343 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 343 (406)
+.+.+. .+++++.|+.|++||++..... ......+...+.+..+.+.....+++++.||.+.+|++...........
T Consensus 156 ~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~ 234 (342)
T d1yfqa_ 156 MDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred eeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence 677777 8999999999999999876542 2334455567778888776666899999999999999876443221110
Q ss_pred cc-CCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 344 AE-DGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 344 ~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
.. ...........+|...|++++|+|+++ +|+||+.||.|+|||+.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE
T ss_pred cceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCc
Confidence 00 000011112245777899999999999 58999999999999998874
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=7.9e-29 Score=221.11 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=172.8
Q ss_pred EEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc------------------------------------
Q 015484 110 QKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ------------------------------------ 153 (406)
Q Consensus 110 ~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------------ 153 (406)
....|.+.|++++|+|++ .++++|+.|+.+++|+.........
T Consensus 92 ~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 92 AIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred EEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccc
Confidence 344699999999999999 6899999999999999765432110
Q ss_pred -CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEE
Q 015484 154 -DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFG 232 (406)
Q Consensus 154 -~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 232 (406)
...........+...+....+.+.+. ++++|+.|+.|++||++++. ++..+.+|...|++++|+| ++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~------~~~~~~~h~~~i~~v~~~p-~~~~l~ 242 (340)
T d1tbga_ 171 IETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM------CRQTFTGHESDINAICFFP-NGNAFA 242 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred cccccccccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCc------EEEEEeCCCCCeEEEEECC-CCCEEE
Confidence 01111122234455667777777777 99999999999999998763 3456678999999999999 788999
Q ss_pred EEecCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEE
Q 015484 233 SAGDDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEW 310 (406)
Q Consensus 233 ~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~ 310 (406)
+|+.||.|++||++.......+ ..+...|.+++|+|++. +|++|+.||.|++||+++++. +..+.+|...|++++|
T Consensus 243 s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~-~~~~~~H~~~V~~l~~ 320 (340)
T d1tbga_ 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGV 320 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEE
T ss_pred EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcE-EEEEcCCCCCEEEEEE
Confidence 9999999999999988776554 45667899999999998 999999999999999998665 8899999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEe
Q 015484 311 DPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 311 ~p~~~~~l~s~~~dg~i~iwd 331 (406)
+|+++ +|++|+.||.|+|||
T Consensus 321 s~d~~-~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 321 TDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSS-CEEEEETTSCEEEEC
T ss_pred eCCCC-EEEEEccCCEEEEeC
Confidence 99997 589999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=8.6e-29 Score=217.58 Aligned_cols=213 Identities=19% Similarity=0.254 Sum_probs=167.9
Q ss_pred ceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeee-eccCccEEEEEeeCCCCCEEEEEecC
Q 015484 159 DLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVY-EAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 159 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
...+.||.+.|++++|+|+++ +|++|+.||+|++||+.++... ..+ ..|...|++++|+| ++.+ ++++.|
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~------~~~~~~h~~~v~~v~~~~-~g~~-~~~~~d 75 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISN------RVFPDVHATMITGIKTTS-KGDL-FTVSWD 75 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE------ECSSCSCSSCEEEEEECT-TSCE-EEEETT
T ss_pred ceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEE------EEEcCCCCCcEEEEEeec-ccee-ecccce
Confidence 567899999999999999998 9999999999999999876432 222 46888999999998 4555 467789
Q ss_pred CcEEEEECCCCcccc---cc-------------------------------------cccCCCeeEEEecCCCCcEEEEE
Q 015484 238 CQLMIWDLRTNQTQQ---RV-------------------------------------KAHEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 238 g~i~i~d~~~~~~~~---~~-------------------------------------~~~~~~v~~i~~~~~~~~~l~~~ 277 (406)
+.+++|+........ .. ......+.+++|+|++. +|++|
T Consensus 76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g 154 (299)
T d1nr0a2 76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVG 154 (299)
T ss_dssp TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEE
T ss_pred eeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 999999975432100 00 01223467788888888 89999
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
+.||.|++||+++..........|...|++++|+|++. +|++++.|+.|++||+...... .....+.+
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~-----------~~~~~~~~ 222 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFEL-----------AHTNSWTF 222 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEE-----------SCCCCCCC
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-----------cccccccc
Confidence 99999999999875543334567899999999999997 6999999999999999763321 12223467
Q ss_pred CCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 358 HKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|...|++++|+|+++ +|++|+.||.|++|++.++..
T Consensus 223 h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 223 HTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTS
T ss_pred ccccccccccccccc-ceEEEcCCCEEEEEECCCCCc
Confidence 899999999999999 699999999999999987643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-27 Score=214.08 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=187.0
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
....+|.+.|++++|+|++ +|++|+.||.|++|+........ ......+...+....+.+++. .+++++.|
T Consensus 47 ~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 117 (355)
T d1nexb2 47 LQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH------VFEGHNSTVRCLDIVEYKNIK-YIVTGSRD 117 (355)
T ss_dssp EEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEEEE------EECCCSSCEEEEEEEEETTEE-EEEEEETT
T ss_pred EEEECCCCCEEEEEEcCCC--EEEEEeccccccccccccccccc------ccccccccccccccccccccc-eeeeecCC
Confidence 3345799999999999854 79999999999999998743211 111222334455667777777 99999999
Q ss_pred CeEEEEeCCCccCCcee-----------------eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccc
Q 015484 189 NKICLWDVSALAQDKVI-----------------DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQ 251 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 251 (406)
+.|++||+.+....... ........|...+..... ++.+++++..|+.|++||+++++.+
T Consensus 118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~d~~i~~~d~~~~~~~ 194 (355)
T d1nexb2 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCL 194 (355)
T ss_dssp SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEE
T ss_pred CcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc---ccceeeeecccceeeeeecccccce
Confidence 99999999875322111 011222234444444333 4688999999999999999999888
Q ss_pred ccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 015484 252 QRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWD 331 (406)
Q Consensus 252 ~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd 331 (406)
.....+...+.++.++|.+. .+++++.|+.|++||++++.. +..+.+|...|.+++|+++ +|++++.||.|++||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd 269 (355)
T d1nexb2 195 YILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWD 269 (355)
T ss_dssp EEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEE
T ss_pred eeeeccccccccccccccce-eeecccccceEEeeecccccc-ccccccccccccccccccc---eeeeeeccccccccc
Confidence 88888889999999999998 899999999999999998654 8889999999999999852 699999999999999
Q ss_pred CCCCCcccccccccCCCCeeEEEecCCCCCeeeEE-eCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 332 LNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFS-WNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++... . .+..|...+..+. +++++. ++++| .||.|+|||+.++.+
T Consensus 270 ~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 270 ANDYS--------------R--KFSYHHTNLSAITTFYVSDN-ILVSG-SENQFNIYNLRSGKL 315 (355)
T ss_dssp TTTCC--------------E--EEEEECTTCCCCCEEEECSS-EEEEE-ETTEEEEEETTTCCB
T ss_pred ccccc--------------e--ecccccCCceEEEEEcCCCC-EEEEE-eCCEEEEEECCCCCE
Confidence 97621 1 1233555566654 455665 66665 589999999998754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.5e-27 Score=208.43 Aligned_cols=296 Identities=13% Similarity=0.102 Sum_probs=207.8
Q ss_pred ceEEEEecCCCCCCCCCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCcee
Q 015484 40 SLTVHWVPSPPQPYSADPTFAVHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVN 119 (406)
Q Consensus 40 ~~~~~~~p~~~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 119 (406)
..+++|.|+. ..++.|+. ++.|.||++... ..........+|.++|.
T Consensus 14 I~~l~fsp~~------------~~L~s~s~-----Dg~v~iwd~~~~----------------~~~~~~~~~~~h~~~V~ 60 (342)
T d1yfqa_ 14 ISDIKIIPSK------------SLLLITSW-----DGSLTVYKFDIQ----------------AKNVDLLQSLRYKHPLL 60 (342)
T ss_dssp EEEEEEEGGG------------TEEEEEET-----TSEEEEEEEETT----------------TTEEEEEEEEECSSCEE
T ss_pred EEEEEEeCCC------------CEEEEEEC-----CCeEEEEEccCC----------------CcceEEEEecCCCCCEE
Confidence 5688998842 15666654 478999988733 12345566778999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCC-CeeEEEecCCCCCeEEEecCCCeEEEEeCCC
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-EGYGLSWSPFKEGYLVSGSHDNKICLWDVSA 198 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~ 198 (406)
+++|+|+++.+|++|+.||.|++|++..... ......+.. ......+.+... .+++++.++++++||++.
T Consensus 61 ~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~ 131 (342)
T d1yfqa_ 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPS--------FQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSSS--------EEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHH
T ss_pred EEEEeCCCCCEEEEcccccceeeeecccccc--------cccccccccccccccccccccc-cccccccccccceeeccc
Confidence 9999998778999999999999999987422 333333333 334444555555 999999999999999876
Q ss_pred ccCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc---cccCCCeeEEEecCCCCcE
Q 015484 199 LAQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 199 ~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~ 273 (406)
........ ..... .........+.+ ....+++++.||.|++||++........ ......+.+..+.+.....
T Consensus 132 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 132 YGDGVIAV--KNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp HTTBCEEE--EESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred cccceeee--cccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE
Confidence 54432221 11111 122334455565 6788889999999999999887654433 3344566677776665558
Q ss_pred EEEEeCCCcEEEEeCCCCCCC--------------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 015484 274 LATASSDTTVALFDMRKMTVP--------------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQ 339 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 339 (406)
+++++.||.+.+|++...... ......|...|++++|+|+++ +|++|+.||.|+|||+.+
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~----- 282 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQT----- 282 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTT-----
T ss_pred EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCC-----
Confidence 999999999999998754321 111235667899999999998 599999999999999987
Q ss_pred ccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCCC
Q 015484 340 LELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRDD 397 (406)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 397 (406)
.+.+..+..+ ..+..++|+|+++ ++++++.|+.+++|......++..
T Consensus 283 ---------~~~l~~~~~~-~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~~~~~~~~ 329 (342)
T d1yfqa_ 283 ---------RKKIKNFAKF-NEDSVVKIACSDN-ILCLATSDDTFKTNAAIDQTIELN 329 (342)
T ss_dssp ---------TEEEEECCCC-SSSEEEEEEECSS-EEEEEEECTHHHHCSSSCTTSCCC
T ss_pred ---------CcEEEEecCC-CCCEEEEEEeCCC-EEEEEEcCCcEEEeeeeCCCccCC
Confidence 3445554432 3455677788888 677878888899998766554433
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.2e-27 Score=218.89 Aligned_cols=246 Identities=14% Similarity=0.208 Sum_probs=169.8
Q ss_pred EEEEeecCCceeEEEE------cCCCCcEEEEEeCCCeEEEEeCCCccccccCC--CCCceeeeCCCCCeeEEEecCCCC
Q 015484 108 IAQKIRVDGEVNRARC------MPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDD--CDPDLRLKGHDKEGYGLSWSPFKE 179 (406)
Q Consensus 108 ~~~~~~h~~~v~~i~~------~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~ 179 (406)
......|...+..+.. .+....++++++.||.|++|++.......... .........+...+..++|.+...
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (393)
T d1sq9a_ 53 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132 (393)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred eEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCC
Confidence 3444556655443332 22222578899999999999987643211000 000011122445677888887542
Q ss_pred ----CeEEEecCCCeEEEEeCCCccCC---------cee---eeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEE
Q 015484 180 ----GYLVSGSHDNKICLWDVSALAQD---------KVI---DAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIW 243 (406)
Q Consensus 180 ----~~l~s~~~dg~i~iwd~~~~~~~---------~~~---~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~ 243 (406)
.++++++.||++++|++...... ... ........+...+.+++|+|+ .+|++|+.||.|++|
T Consensus 133 ~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~lasgs~Dg~i~iw 210 (393)
T d1sq9a_ 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGFNNGTVQIS 210 (393)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--SEEEEECTTSEEEEE
T ss_pred cccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCC--CEEEEEeCCCcEEEE
Confidence 37899999999999998643210 000 111122234566889999983 488999999999999
Q ss_pred ECCCCccccc------ccccCCCeeEEEecCCCCcEEEEEeCCCc---EEEEeCCCCCCCcEE-------------ecCC
Q 015484 244 DLRTNQTQQR------VKAHEKEVNYLSFNPYNEWVLATASSDTT---VALFDMRKMTVPLHI-------------LSSH 301 (406)
Q Consensus 244 d~~~~~~~~~------~~~~~~~v~~i~~~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~-------------~~~h 301 (406)
|+++++.+.. +.+|..+|++++|+|++. +|++|+.|++ |++||++++.. +.. +.+|
T Consensus 211 d~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH 288 (393)
T d1sq9a_ 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAH 288 (393)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSB
T ss_pred eecccccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeeccccccee-eeeeccccccccceeeeecc
Confidence 9998876543 356889999999999999 9999998874 89999987543 333 3579
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCee----eEEeCCCCC
Q 015484 302 TEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKIS----DFSWNKNDP 372 (406)
Q Consensus 302 ~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~s~~~~ 372 (406)
...|++++|+|+++ +|++++.|++|+|||+.+ .+++..+.+|...|. .++|+|++.
T Consensus 289 ~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~--------------g~~~~~l~gH~~~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 289 SSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT--------------KERITTLNMHCDDIEIEEDILAVDEHGD 348 (393)
T ss_dssp SSCEEEEEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred cCceeeeccCCCCC-eeEEECCCCEEEEEECCC--------------CCEEEEECCcCCcccCCccEEEECCCCC
Confidence 99999999999997 699999999999999987 466677777766554 355666554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8.2e-25 Score=194.49 Aligned_cols=207 Identities=23% Similarity=0.373 Sum_probs=156.4
Q ss_pred CCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe
Q 015484 156 CDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG 235 (406)
Q Consensus 156 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 235 (406)
.++...+++|.+.|.+ +++++|+ +|+||+.||+|++||+.+++ ++..+.+|...|.+++|+| .+|++++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~------~~~~~~~h~~~V~~v~~~~---~~l~s~s 74 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGK------CLRTLVGHTGGVWSSQMRD---NIIISGS 74 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCC------EEEECCCCSSCEEEEEEET---TEEEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCC------EEEEEeCCCCCEEEEEeCC---Cccccce
Confidence 5668889999999865 3555677 99999999999999998764 3466788999999999986 4888898
Q ss_pred cCCcEEEEECCCCcc-----------------------------------------------------------------
Q 015484 236 DDCQLMIWDLRTNQT----------------------------------------------------------------- 250 (406)
Q Consensus 236 ~dg~i~i~d~~~~~~----------------------------------------------------------------- 250 (406)
.|+.+++|+......
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 154 (342)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence 888888887653211
Q ss_pred ---------------cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCC
Q 015484 251 ---------------QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 251 ---------------~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~ 315 (406)
+..+.+|...+ ..+.+++. .+++|+.||.|++||++.... +..+..|...+.++.++++
T Consensus 155 ~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~-~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~-- 228 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELKDN-- 228 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEETT--
T ss_pred CCCeEEEeecccceeeEEEcCccccc--ccccCCCC-EEEEEeCCCeEEEeeccccee-eeEecccccceeEEecCCC--
Confidence 01111122222 33334555 899999999999999998654 8889999999999988763
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+|++++.||.|++||+...... ..+.....|...+.++.++++ ++++|+.||.|+|||+.++..
T Consensus 229 -~l~s~s~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 229 -ILVSGNADSTVKIWDIKTGQCL-----------QTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp -EEEEEETTSCEEEEETTTCCEE-----------EEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE
T ss_pred -EEEEEcCCCEEEEEeccccccc-----------ccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCE
Confidence 6999999999999999863211 112223346677888888764 789999999999999998754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=5.2e-25 Score=197.88 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=178.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEE-eCCC-eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTK-TSSC-EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~-~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
.+.|.+.|.+++|+|+++ .|+++ ..+| .|++|+.... ....+..|...|.+++|+|+++ +|++++.+
T Consensus 38 ~~~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~---------~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~ 106 (360)
T d1k32a3 38 KVPEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTG---------KAEKFEENLGNVFAMGVDRNGK-FAVVANDR 106 (360)
T ss_dssp ECSCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTC---------CEEECCCCCCSEEEEEECTTSS-EEEEEETT
T ss_pred EccCCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEECCCC---------cEEEeeCCCceEEeeeeccccc-ccceeccc
Confidence 468999999999999995 45544 4443 7999999873 2456778999999999999999 99999999
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe----------cCCcEEEEECCCCcccccccccC
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG----------DDCQLMIWDLRTNQTQQRVKAHE 258 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~ 258 (406)
+.+++|++..+.. ...+..|...+.+++|+| ++++|+.+. .++.+++||+.+++..... .+.
T Consensus 107 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~ 178 (360)
T d1k32a3 107 FEIMTVDLETGKP------TVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TEN 178 (360)
T ss_dssp SEEEEEETTTCCE------EEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSS
T ss_pred cccccccccccce------eeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeec-ccc
Confidence 9999999987643 244566788899999999 567776543 3456999999987654433 466
Q ss_pred CCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC------------------------------------------cE
Q 015484 259 KEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP------------------------------------------LH 296 (406)
Q Consensus 259 ~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------------~~ 296 (406)
..+..++|+|+|+ .|++++.++.+.+||....... +.
T Consensus 179 ~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T d1k32a3 179 SHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257 (360)
T ss_dssp SBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred cccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccccccee
Confidence 7788999999999 8999999999999986542110 00
Q ss_pred EecCCCCCeEEEEEcCCC----------C--CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeee
Q 015484 297 ILSSHTEEVFQVEWDPNH----------E--TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISD 364 (406)
Q Consensus 297 ~~~~h~~~v~~i~~~p~~----------~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 364 (406)
.+....+....+...+++ . .++++++.++.|++||+... + ... |...|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------------~-~~~---~~~~v~~ 319 (360)
T d1k32a3 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------------K-VTE---VKNNLTD 319 (360)
T ss_dssp ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC--------------C-EEE---EEEEEEE
T ss_pred ecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC--------------e-EEE---ecCCcCE
Confidence 011111122333333322 1 12455667889999998762 1 112 3345899
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 365 FSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 365 ~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
++|+|||+ .|++++.||.|++|++.++.-
T Consensus 320 ~~~SpDG~-~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 320 LRLSADRK-TVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp EEECTTSC-EEEEEETTSCEEEEESSCTTS
T ss_pred EEECCCCC-EEEEEECCCeEEEEECCCCCc
Confidence 99999999 588999999999999988754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.3e-21 Score=171.01 Aligned_cols=255 Identities=11% Similarity=0.100 Sum_probs=189.9
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
++.+.+.....+..++|+|+++.++++++.++.|++||+.+. .....+..+. .+..++|++++...++++.
T Consensus 23 ~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 23 KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--------ceeeeeeccc-ccccccccccccccccccc
Confidence 456677777889999999999666678888999999999874 2355566555 4689999999885667777
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEe
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
.++.+.+|+..++... ..+. +.....++.|+|++..+++++..++.+.+|+..+......+.. ...+..+.+
T Consensus 94 ~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 165 (301)
T d1l0qa2 94 ASSTLSVIDTTSNTVA------GTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAV 165 (301)
T ss_dssp TTTEEEEEETTTTEEE------EEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEE
T ss_pred ccceeeecccccceee------eecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEe
Confidence 8889999999876422 2222 4456788999996666677778899999999999887777653 455788999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEe--CCCcEEEEeCCCCCcccccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSA--DDRRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~ 344 (406)
+|++..++++...++.+.+|+...... .... .....+..++|++++..+++++. .++.|.+||+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---------- 233 (301)
T d1l0qa2 166 TPDGTKVYVANFDSMSISVIDTVTNSV-IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------- 233 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEE-EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT----------
T ss_pred eccccceeeecccccccccccccceee-eecc-cccCCcceeeccccccccccccccceeeeeeeeecCC----------
Confidence 999984444444456777777765432 3333 34466788999999986544443 357899999986
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+++..+.. ...+.+++|+|+|++++++++.|+.|++||+.++.+.
T Consensus 234 ----~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 234 ----NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp ----TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ----CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 344444443 3468999999999977788889999999999988653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.2e-22 Score=171.18 Aligned_cols=199 Identities=21% Similarity=0.397 Sum_probs=154.3
Q ss_pred CceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC
Q 015484 158 PDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD 237 (406)
Q Consensus 158 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 237 (406)
.+.....|...|+|++| +++ +|+||+.||+|++||+.+++ ++..+.+|...|.+++|+ +++|++|+.|
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~------~~~~l~~H~~~V~~v~~~---~~~l~s~s~D 74 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLE------CKRILTGHTGSVLCLQYD---ERVIITGSSD 74 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCC------EEEEECCCSSCEEEEECC---SSEEEEEETT
T ss_pred EEeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCc------EEEEEecCCCCEeeeecc---cceeeccccc
Confidence 34556678889999876 466 99999999999999998764 346678899999999874 5789999999
Q ss_pred CcEEEEECCCCcccccc-------------------------------------------cccCCCeeEEEecCCCCcEE
Q 015484 238 CQLMIWDLRTNQTQQRV-------------------------------------------KAHEKEVNYLSFNPYNEWVL 274 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~v~~i~~~~~~~~~l 274 (406)
|.|++|+++.+...... ..|...+..+.+.+ . .+
T Consensus 75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~ 151 (293)
T d1p22a2 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YI 151 (293)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--T-EE
T ss_pred ccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--c-cc
Confidence 99999999765432111 12333444444443 2 67
Q ss_pred EEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEE
Q 015484 275 ATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFS 354 (406)
Q Consensus 275 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (406)
++++.|+.|++||+++.+. +..+.++...+..+.+++. .+++++.||.|++||++. ...+..
T Consensus 152 ~~~s~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~--------------~~~~~~ 213 (293)
T d1p22a2 152 VSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIEC--------------GACLRV 213 (293)
T ss_dssp EEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETT---EEEEEETTSCEEEEETTT--------------CCEEEE
T ss_pred ccccCCCceeeecCCCCcE-EEEEcccccccccccCCCC---eEEEecCCCEEEEEeccc--------------ceeeee
Confidence 8888999999999998654 7788889999999888743 599999999999999987 355666
Q ss_pred ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 355 HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 355 ~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
..+|...+..+. +++. .|++++.||.|++|++...
T Consensus 214 ~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 214 LEGHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHH
T ss_pred ecccceeeeecc--ccce-EEEEEcCCCEEEEEECCCC
Confidence 778888777655 4455 6999999999999998654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=8.2e-22 Score=171.45 Aligned_cols=152 Identities=20% Similarity=0.358 Sum_probs=123.2
Q ss_pred EEecCCCCCeEEEecCC-CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 172 LSWSPFKEGYLVSGSHD-NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
.++++++. .+++++.+ +.+++|++...... ......+...+++++|+| ++.+|++|+.||.|++||+.+++.
T Consensus 124 ~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~ 196 (287)
T d1pgua2 124 SAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVS-----FDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREV 196 (287)
T ss_dssp EEEEECSS-EEEEEETTTSCEEEEETTEEEEE-----EECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE
T ss_pred eeeeccCc-ceeeeccccceeeeeecccccee-----eeeeeccCCceeEEEecc-Cccccccccccccccceeeccccc
Confidence 45566666 66666665 57999998754321 122234678899999999 688999999999999999998876
Q ss_pred cc-cccccCCCeeEEEecCCC---------CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEE
Q 015484 251 QQ-RVKAHEKEVNYLSFNPYN---------EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLAS 320 (406)
Q Consensus 251 ~~-~~~~~~~~v~~i~~~~~~---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s 320 (406)
.. .+..|...|.+++|+|.+ ..+|++|+.|+.|++||+++....+..+.+|...|++++|+|++ .|++
T Consensus 197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s 274 (287)
T d1pgua2 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVS 274 (287)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEE
T ss_pred ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEE
Confidence 44 457889999999999854 23899999999999999988777688889999999999999986 3889
Q ss_pred EeCCCcEEEEeC
Q 015484 321 SADDRRLMVWDL 332 (406)
Q Consensus 321 ~~~dg~i~iwd~ 332 (406)
++.||.|++|++
T Consensus 275 ~g~D~~v~iW~i 286 (287)
T d1pgua2 275 SGADACIKRWNV 286 (287)
T ss_dssp EETTSCEEEEEE
T ss_pred EECCCeEEEEEE
Confidence 999999999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=7.4e-23 Score=183.63 Aligned_cols=191 Identities=11% Similarity=0.068 Sum_probs=154.7
Q ss_pred eEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCC--eEEEEe
Q 015484 119 NRARCMP-QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDN--KICLWD 195 (406)
Q Consensus 119 ~~i~~~p-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd 195 (406)
..-.|+| +| .++|+++ .|.|++|+..... ... .+|...|.+++|+|+|+ +|++++.+. .|++||
T Consensus 6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~---------~~~-~~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d 72 (360)
T d1k32a3 6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTY---------VLK-VPEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYD 72 (360)
T ss_dssp GEEEEEECGG-GCEEEEE-TTEEEEECTTSSB---------EEE-CSCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEE
T ss_pred hcccccCCCC-CEEEEEE-CCeEEEEECCCCc---------EEE-ccCCCCEEEEEECCCCC-EEEEEEcCCCCEEEEEE
Confidence 3457999 77 6788765 5799999997632 222 36899999999999998 777665443 799999
Q ss_pred CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEE
Q 015484 196 VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLA 275 (406)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 275 (406)
+.++.. ..+..|...|.+++|+| ++++|++++.++.+++|++.+++....+..+...+.+++|+|+|+ +|+
T Consensus 73 ~~~~~~-------~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la 143 (360)
T d1k32a3 73 YRTGKA-------EKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIA 143 (360)
T ss_dssp TTTCCE-------EECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEE
T ss_pred CCCCcE-------EEeeCCCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhcccee-eee
Confidence 987542 34567889999999999 788999999999999999999998888888889999999999999 666
Q ss_pred EEe----------CCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 276 TAS----------SDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 276 ~~~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.+. .++.+++||+.... ...+..|...+..++|+|+++ .|++++.++.+.+|+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 144 YGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSS
T ss_pred eeccccccceeeccccceeeeccccCc--eeeecccccccccccccCCCC-EEEEEeCCCceEcccccc
Confidence 433 34569999998754 455666778899999999997 588999999999999755
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.1e-21 Score=180.90 Aligned_cols=275 Identities=10% Similarity=0.070 Sum_probs=176.3
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee---eCCCCCeeEEEecCCCCCeEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL---KGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++...+.+...+..++|+|+| .+|++++.||+|++||+.+... .....+ .+|...+.+++|+|+|+.+++
T Consensus 53 ~~~~~l~~g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~------~~~~~i~~~~~~~~~~~s~~~spDG~~l~v 125 (426)
T d1hzua2 53 KIVKVIDTGYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEP------TKVAEIKIGIEARSVESSKFKGYEDRYTIA 125 (426)
T ss_dssp SEEEEEECCSSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSC------EEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred cEEEEEeCCCCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCce------eEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence 345566666779999999999 5788899999999999987432 112222 245566778889999983345
Q ss_pred EecCCCeEEEEeCCCccCCceeeeee-----eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc-ccccc
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMH-----VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ-RVKAH 257 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 257 (406)
++..++.+++||..++.....+.... ....+......+.+++++..++.+....+.+.+++........ ....+
T Consensus 126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence 66689999999998864322111000 0011223344555565444444444455566666655544322 22346
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---------------------------------------------
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT--------------------------------------------- 292 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------------- 292 (406)
...+..+.|+|++++++++...+..+.+++..+..
T Consensus 206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~ 285 (426)
T d1hzua2 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence 67788999999998555544445566666654321
Q ss_pred --------CCcEEecCCCCCeEEEEEcCCCCCEEE-------EEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC
Q 015484 293 --------VPLHILSSHTEEVFQVEWDPNHETVLA-------SSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG 357 (406)
Q Consensus 293 --------~~~~~~~~h~~~v~~i~~~p~~~~~l~-------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (406)
.....+.+|...+..++|+|++++ |+ +++.|++|+|||+.+.......... .-...+..
T Consensus 286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~-----~~~~~~~~ 359 (426)
T d1hzua2 286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI-----AEWADLGE 359 (426)
T ss_dssp TTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH-----HHHHCCCS
T ss_pred cccccccceEeEEEecCCCceeEEEcCCCCce-EEEeecCCCCcccCCEEEEEECCCCCcCeEEecc-----chhcccCC
Confidence 113456678888999999999985 55 3456889999999875432211000 00011234
Q ss_pred CCCCeeeEEeCCCCCcEEEEE----eCCCcEEEEeCCCccc
Q 015484 358 HKAKISDFSWNKNDPWVISSV----ADDNTVQVWQMTDSIY 394 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~----~~dg~i~iw~~~~~~~ 394 (406)
|...|..++|||+|+++++++ +.+|.|+|||..+...
T Consensus 360 ~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred CCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 566799999999999776765 3578899999998864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.6e-20 Score=162.44 Aligned_cols=292 Identities=10% Similarity=0.117 Sum_probs=196.9
Q ss_pred EEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEE
Q 015484 62 HKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVY 141 (406)
Q Consensus 62 ~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~ 141 (406)
+.+++.+. ..+.|+++++.-. +.++..+.+.|.+.+..|+|+|+|+.+++++..++.|+
T Consensus 4 ~~v~v~~~----~~~~I~v~~~~~~-----------------~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~ 62 (333)
T d1ri6a_ 4 QTVYIASP----ESQQIHVWNLNHE-----------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62 (333)
T ss_dssp EEEEEEEG----GGTEEEEEEECTT-----------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred eEEEEECC----CCCcEEEEEEcCC-----------------CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEE
Confidence 44544443 3478888876621 34677888999999999999999965556777799999
Q ss_pred EEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEE
Q 015484 142 VFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVED 220 (406)
Q Consensus 142 iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (406)
+|++....... .......+...+..++|+|+|+ +|++++ .++.|.+|+....... .......+...+.+
T Consensus 63 ~~~i~~~~~~~-----~~~~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~ 132 (333)
T d1ri6a_ 63 AYRIAPDDGAL-----TFAAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPV----GVVDVVEGLDGCHS 132 (333)
T ss_dssp EEEECTTTCCE-----EEEEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEE----EEEEEECCCTTBCC
T ss_pred EEEEeCCCCcE-----EEeeecccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccce----ecccccCCCccceE
Confidence 99987632210 1112223445677899999999 777766 4778999988764321 12233445667889
Q ss_pred EEeeCCCCCEEEEEecCCcEEEEECCCCcccccc------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 015484 221 VSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP 294 (406)
Q Consensus 221 i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 294 (406)
+.++|++..++.....+..+.+|+.......... .........++|++++...+.+....+...+++.......
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 212 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc
Confidence 9999955444544556678999998765432211 2234556789999999855556666778888887654332
Q ss_pred cEE---e------cCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeE
Q 015484 295 LHI---L------SSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDF 365 (406)
Q Consensus 295 ~~~---~------~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 365 (406)
+.. . .........++++++++.+++++..++.+.+|++..... ...+.........+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~ 281 (333)
T d1ri6a_ 213 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-----------VLSKEGFQPTETQPRGF 281 (333)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----------CEEEEEEEECSSSCCCE
T ss_pred eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC-----------EEEEEEEeCCCCCeeEE
Confidence 211 1 122345778899999998787888899999999876322 12222223344568899
Q ss_pred EeCCCCCcEEEEEeCCCcEEEEeC--CCcccC
Q 015484 366 SWNKNDPWVISSVADDNTVQVWQM--TDSIYR 395 (406)
Q Consensus 366 ~~s~~~~~~l~s~~~dg~i~iw~~--~~~~~~ 395 (406)
+|+|+|+++++++..++.|++|++ .++.++
T Consensus 282 a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 282 NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 999999976666667799999955 555553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=2.2e-21 Score=178.81 Aligned_cols=260 Identities=13% Similarity=0.035 Sum_probs=183.4
Q ss_pred EEcCCCCc-EEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCcc
Q 015484 122 RCMPQKPN-LVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALA 200 (406)
Q Consensus 122 ~~~p~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 200 (406)
.+.++... ++++.+.||+|+|||+.+. +.+.++..|. .+.+++|+|+|+ +|++++.||+|++||+.+++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~--------~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTC--------SEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEETTSSS
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCC--------cEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEccCCc
Confidence 34554434 4577888999999999883 4467777764 589999999999 99999999999999999875
Q ss_pred CCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccC-----------CCeeEEEecCC
Q 015484 201 QDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHE-----------KEVNYLSFNPY 269 (406)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v~~i~~~~~ 269 (406)
..... .+....+|...+.+++|+|++..+++++..++.+++||..++.....+..+. .....+..+++
T Consensus 95 ~~~~~-~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 173 (426)
T d1hzua2 95 PTKVA-EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173 (426)
T ss_dssp CEEEE-EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred eeEEE-EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCC
Confidence 42211 2233345667778888999555556677789999999999988766554333 33455666666
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccc-------
Q 015484 270 NEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLEL------- 342 (406)
Q Consensus 270 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------- 342 (406)
+..++.+....+.+.+++.............+...+..+.|+|++++++++...+..+.+++...........
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
T d1hzua2 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253 (426)
T ss_dssp SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence 6644444444556667766665544445556788899999999999777777778889999887643211000
Q ss_pred ------------------ccc---------------CCCCeeEEEecCCCCCeeeEEeCCCCCcEEE-------EEeCCC
Q 015484 343 ------------------DAE---------------DGPPELLFSHGGHKAKISDFSWNKNDPWVIS-------SVADDN 382 (406)
Q Consensus 343 ------------------~~~---------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~-------s~~~dg 382 (406)
... ....+....+.+|...+..++|+|++++ |+ +++.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~~~~s~~~~~ 332 (426)
T d1hzua2 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQ 332 (426)
T ss_dssp SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCTTCSSHHHHT
T ss_pred cceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce-EEEeecCCCCcccCC
Confidence 000 0112456677889999999999999995 55 355688
Q ss_pred cEEEEeCCCcc
Q 015484 383 TVQVWQMTDSI 393 (406)
Q Consensus 383 ~i~iw~~~~~~ 393 (406)
+|+|||+.++.
T Consensus 333 tv~vwd~~t~~ 343 (426)
T d1hzua2 333 SVAVFDLKNLD 343 (426)
T ss_dssp CEEEEETTCTT
T ss_pred EEEEEECCCCC
Confidence 99999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=8.4e-20 Score=161.75 Aligned_cols=232 Identities=9% Similarity=0.036 Sum_probs=161.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC--CCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCCCccCCcee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG--HDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVSALAQDKVI 205 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~ 205 (406)
.++++++.|++|+|||+.+.. .+..+.. +...+.+++|+|+|+ ++ ++++.++.|.+||+.+++....+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~--------~~~~i~~~~~~~~~~~i~~spDg~-~l~v~~~~~~~v~v~D~~t~~~~~~~ 72 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA--------VDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--------EEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCe--------EEEEEECCCCCCCccEEEECCCCC-EEEEEECCCCeEEEEECCCCcEEEEE
Confidence 579999999999999999842 2444543 445678999999998 55 67788999999999987543222
Q ss_pred eeeeeeeccCccEEEEEeeCCCCCEEEEEe------------cCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 206 DAMHVYEAHESVVEDVSWHLKNENLFGSAG------------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 206 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
.. .....+...+..++|+| +++.++++. .++.+.+||..+++....+.. ...+..++|+|++. +
T Consensus 73 ~~-~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~ 148 (337)
T d1pbyb_ 73 DL-STPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-K 148 (337)
T ss_dssp EC-CBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-C
T ss_pred ec-CCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCC-E
Confidence 11 00111223456789999 555555554 467899999999887777753 45678899999999 6
Q ss_pred EEEEeCCCcEEEEeCCCCCCC-----------------------------------------------------------
Q 015484 274 LATASSDTTVALFDMRKMTVP----------------------------------------------------------- 294 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~----------------------------------------------------------- 294 (406)
+++++. .+.+||.......
T Consensus 149 l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (337)
T d1pbyb_ 149 LYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc
Confidence 666654 4677877643210
Q ss_pred ------cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeC
Q 015484 295 ------LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWN 368 (406)
Q Consensus 295 ------~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 368 (406)
...+..+...+..+.++|++. +++.+ ++.|++||+.+ ...+.... +...+.+++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~--------------~~~~~~~~-~~~~~~~~~~s 288 (337)
T d1pbyb_ 227 ETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEK--------------NASIKRVP-LPHSYYSVNVS 288 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTT--------------TEEEEEEE-CSSCCCEEEEC
T ss_pred CCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECCC--------------CcEEEEEc-CCCCEEEEEEC
Confidence 011122344556677777776 34443 58999999987 24444433 45678999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 369 KNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 369 ~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
|+|+ .|++++.|+.|+|||+.+...
T Consensus 289 ~dG~-~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 289 TDGS-TVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TTSC-EEEEESBSSEEEEEETTTCCE
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 9999 577889999999999988643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.3e-19 Score=166.87 Aligned_cols=281 Identities=9% Similarity=0.029 Sum_probs=181.4
Q ss_pred EEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceee---eCCCCCeeEEEecCCCCCeEE
Q 015484 107 EIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRL---KGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 107 ~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~ 183 (406)
++...+.....+..++|+|+| +++++++.||.|++||+.+... .....+ .+|.+.+.+.+|+|+|+.+++
T Consensus 53 ~v~~~~~~g~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~------~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 53 EIKTVLDTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEP------TTVAEIKIGSEARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp CEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSC------CEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred cEEEEEeCCCCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCc------eEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence 345555544579999999999 5788899999999999987422 112222 345566677788999983457
Q ss_pred EecCCCeEEEEeCCCccCCceeeeee-----eeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccccc-cc
Q 015484 184 SGSHDNKICLWDVSALAQDKVIDAMH-----VYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVK-AH 257 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~ 257 (406)
+++.+++|++||..+++....+.... ....+......+.++|++..++++...++.|.+||..+.+...... .+
T Consensus 126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~ 205 (432)
T d1qksa2 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205 (432)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence 88889999999998865432221100 0112445667788999666677788889999999998876543322 34
Q ss_pred CCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC------------------------------------cEE----
Q 015484 258 EKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP------------------------------------LHI---- 297 (406)
Q Consensus 258 ~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------~~~---- 297 (406)
...+..++|+|+++++++++..++.+.++|.+..... +..
T Consensus 206 g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~ 285 (432)
T d1qksa2 206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 285 (432)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence 5678899999999955555555668888888754210 000
Q ss_pred ---ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccc------c-------cccCCCCeeE-----EEec
Q 015484 298 ---LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLE------L-------DAEDGPPELL-----FSHG 356 (406)
Q Consensus 298 ---~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~-------~~~~~~~~~~-----~~~~ 356 (406)
...|...+....++|++.. +++++.+...++|+.......... . ...+...++. ..+.
T Consensus 286 ~~~~~~~~~~v~~~~~~~~g~~-~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~ 364 (432)
T d1qksa2 286 PEGHPDNAWKILDSFPALGGGS-LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT 364 (432)
T ss_dssp TTTCTTTBTSEEEEEECSCSCC-CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC
T ss_pred cccccccccEEEEEEEcCCCCe-EEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccC
Confidence 0112234666677777753 677777778888875442211000 0 0001111110 0112
Q ss_pred CCCCCeeeEEeCCCCCcEEEEEe----CCCcEEEEeCCCcccC
Q 015484 357 GHKAKISDFSWNKNDPWVISSVA----DDNTVQVWQMTDSIYR 395 (406)
Q Consensus 357 ~h~~~v~~~~~s~~~~~~l~s~~----~dg~i~iw~~~~~~~~ 395 (406)
.|...|..++|+|+|+++++|.. .+|.|.|||..+..+.
T Consensus 365 ~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 365 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence 46667899999999997666653 4688999999998653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=6.6e-19 Score=161.98 Aligned_cols=253 Identities=13% Similarity=0.035 Sum_probs=177.0
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAM 208 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 208 (406)
.++++.+.+|+|.|||..+. +.+..+..| ..+..++|+|+|+ +|++++.||+|++||+.+++... ...+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~--------~v~~~~~~g-~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~-~~~i 101 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTY--------EIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT-VAEI 101 (432)
T ss_dssp EEEEEETTTTEEEEEETTTC--------CEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-EEEE
T ss_pred EEEEEEcCCCEEEEEECCCC--------cEEEEEeCC-CCeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceE-EEEE
Confidence 34689999999999999883 446777766 4689999999999 99999999999999998865422 2223
Q ss_pred eeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc-----------cCCCeeEEEecCCCCcEEEEE
Q 015484 209 HVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA-----------HEKEVNYLSFNPYNEWVLATA 277 (406)
Q Consensus 209 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~~l~~~ 277 (406)
.....|...+.+..|+|++..+++++..++.|++||..+++.+..+.. +......+.++|++..++++.
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 333456667777888885555668889999999999999887655432 345567789999999667778
Q ss_pred eCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCccccccc-----c--------
Q 015484 278 SSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELD-----A-------- 344 (406)
Q Consensus 278 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~-------- 344 (406)
..++.|.+||....+........+...+..++|+|+++++++++..++.+.++|............ .
T Consensus 182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 261 (432)
T d1qksa2 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV 261 (432)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee
Confidence 888999999998765422222245567899999999997677777788899999876322110000 0
Q ss_pred -----------cCCCCeeEEE------ecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 345 -----------EDGPPELLFS------HGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 345 -----------~~~~~~~~~~------~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
..+....... +..|...|....++|++. .+++++.++..++|......
T Consensus 262 ~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~s~p~~~~lw~~~~~~ 326 (432)
T d1qksa2 262 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-SLFIKTHPNSQYLYVDATLN 326 (432)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCSEEEEECTTC
T ss_pred cCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCC-eEEEEecCCccceeecccCC
Confidence 0000000000 012334567777888877 47777778888888766543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=3.8e-19 Score=158.00 Aligned_cols=245 Identities=10% Similarity=0.006 Sum_probs=158.2
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 121 ARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 121 i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
++|++++ .+|++++.+++|.|||+.+. +...++. .|...+.+++|+|+|+.++++++.++.|.+||+.++
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~--------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCCC-cEEEEEcCCCEEEEEECCCC--------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence 4678888 78999999999999999984 3355555 456677899999999844577778999999999987
Q ss_pred cCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe------------cCCcEEEEECCCCccccccccc--CCCeeEEE
Q 015484 200 AQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG------------DDCQLMIWDLRTNQTQQRVKAH--EKEVNYLS 265 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~--~~~v~~i~ 265 (406)
+....+........+...+..++|+| +++.+++++ .++.+.+||..+++....+..+ ...+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T d1jmxb_ 73 KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR 151 (346)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE
T ss_pred eeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE
Confidence 54322211111111223456788998 455554443 4677888988876655443221 22334444
Q ss_pred ecCCCCcEEEEE----------------------------------------------------------------eCCC
Q 015484 266 FNPYNEWVLATA----------------------------------------------------------------SSDT 281 (406)
Q Consensus 266 ~~~~~~~~l~~~----------------------------------------------------------------~~dg 281 (406)
+++++. +++++ ..++
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 152 AADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp ECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred ecCCCE-EEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 444443 32221 1112
Q ss_pred cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCC
Q 015484 282 TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAK 361 (406)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 361 (406)
.+.+||+............|...+..+.+++++.. ++... ++.|.+||..+ .+++.... +...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~--------------~~~~~~~~-~~~~ 293 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQ--------------RKLIKAAN-LDHT 293 (346)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTT--------------TEEEEEEE-CSSC
T ss_pred eEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCC--------------CcEEEEEc-CCCC
Confidence 23333433333222333456667788888888876 44444 46899999976 24444333 3456
Q ss_pred eeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 362 ISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 362 v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+.+++|+|+|++ |++++.|+.|+|||+.+...
T Consensus 294 ~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 294 YYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp CCEEEECSSSSC-EEEESBSSEEEEEETTTTEE
T ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEECccCCE
Confidence 999999999995 77888999999999998743
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=2.1e-17 Score=143.74 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=169.8
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
...++++.+++|.|||+.+.+ ...++.. ...+..++|+|+|+ +| ++++.++.|++||+.++..
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~--------~~~~i~~-g~~p~~va~spdG~-~l~v~~~~~~~i~v~d~~t~~~------ 66 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNK--------VTATIPV-GSNPMGAVISPDGT-KVYVANAHSNDVSIIDTATNNV------ 66 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------EEEEEEC-SSSEEEEEECTTSS-EEEEEEGGGTEEEEEETTTTEE------
T ss_pred EEEEEECCCCEEEEEECCCCe--------EEEEEEC-CCCceEEEEeCCCC-EEEEEECCCCEEEEEECCCCce------
Confidence 345677889999999998843 2444443 34578999999998 55 6778899999999988643
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEe
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFD 287 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd 287 (406)
+..+..+. .+..++|++++..+++++..++.+.+|+..+++....+.. .....++.++|++..+++++..++.+.+|+
T Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eeeeeccc-cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeee
Confidence 23344443 5688999996666777788889999999999887777764 456788999999996667777788999999
Q ss_pred CCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 288 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
..+... +..+. +...+..+.++|++..++++...++.+.+|+... ........ ....+..++|
T Consensus 145 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~ 207 (301)
T d1l0qa2 145 TVTKAV-INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------------NSVIDTVK-VEAAPSGIAV 207 (301)
T ss_dssp TTTTEE-EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------------TEEEEEEE-CSSEEEEEEE
T ss_pred ccccce-eeecc-cCCCceEEEeeccccceeeecccccccccccccc--------------eeeeeccc-ccCCcceeec
Confidence 987653 44444 3456889999999986555555667788888765 23333333 3345788999
Q ss_pred CCCCCcEEEEEe--CCCcEEEEeCCCccc
Q 015484 368 NKNDPWVISSVA--DDNTVQVWQMTDSIY 394 (406)
Q Consensus 368 s~~~~~~l~s~~--~dg~i~iw~~~~~~~ 394 (406)
++++..+++++. .++.|++||+.++.+
T Consensus 208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred cccccccccccccceeeeeeeeecCCCeE
Confidence 999996554443 346899999988754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=2.4e-15 Score=134.97 Aligned_cols=256 Identities=8% Similarity=-0.052 Sum_probs=165.2
Q ss_pred eecCCceeEEEEcCCCCcEEEEE----eCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTK----TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS- 186 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~- 186 (406)
-.+.+++..++++|++..++++. +..+.|.+||..+. +.+..+..+..+ .++|+|+|+ +|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--------~~~~~~~~~~~~--~~a~SpDG~-~l~va~~ 85 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGS-EFALAST 85 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--------CEEEEEeCCCCc--cEEEcCCCC-EEEEEee
Confidence 35788999999999997655442 23467999998773 335556555443 799999999 777764
Q ss_pred ---------CCCeEEEEeCCCccCCceee-------------------e------ee---------e-------eeccCc
Q 015484 187 ---------HDNKICLWDVSALAQDKVID-------------------A------MH---------V-------YEAHES 216 (406)
Q Consensus 187 ---------~dg~i~iwd~~~~~~~~~~~-------------------~------~~---------~-------~~~~~~ 216 (406)
.++.|.+||..+++....+. + +. . ...+..
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS 165 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec
Confidence 46789999998764321110 0 00 0 011223
Q ss_pred cEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccc------cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 217 VVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKA------HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRK 290 (406)
Q Consensus 217 ~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~ 290 (406)
...++.++|.+...+++.+.|+.+.+|+...++....... .......+.+.+++. ++..+.++.+.+|+...
T Consensus 166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR--IVWPVYSGKILQADISA 243 (373)
T ss_pred cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce--EEEecCCceEEEEEcCC
Confidence 3456778887777888999999999999988776544421 122234455565554 55666788999999876
Q ss_pred CCCC-cEEecCCC----------CCeEEEEEcCCCCC---------EEEEEeCCCcEEEEeCCCCCcccccccccCCCCe
Q 015484 291 MTVP-LHILSSHT----------EEVFQVEWDPNHET---------VLASSADDRRLMVWDLNRIGDEQLELDAEDGPPE 350 (406)
Q Consensus 291 ~~~~-~~~~~~h~----------~~v~~i~~~p~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (406)
.... ......+. .....++++|++.. .+++...++.+.+||.... +
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~--------------~ 309 (373)
T d2madh_ 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------------Q 309 (373)
T ss_pred CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC--------------c
Confidence 5321 11111111 22334555555543 2344556678889988762 2
Q ss_pred eEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCcccC
Q 015484 351 LLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDSIYR 395 (406)
Q Consensus 351 ~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~~~~ 395 (406)
.+..+ .+...+..++|+|+|++ ++++++.|+.|++||+.++...
T Consensus 310 ~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 310 TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 33333 35567899999999986 4578899999999999998653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.1e-15 Score=134.62 Aligned_cols=243 Identities=10% Similarity=0.092 Sum_probs=164.9
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeE-EEecCCCeEEEEeCCCccCCceeee
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYL-VSGSHDNKICLWDVSALAQDKVIDA 207 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 207 (406)
.++++++.+++|+||++..... . .......|.+.+.+|+|+|+|+ +| +++..|+.|++|++.........
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~-----l-~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~~i~~~~~~~~~-- 75 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGA-----L-TLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDDGALTF-- 75 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC-----E-EEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEE--
T ss_pred EEEEECCCCCcEEEEEEcCCCC-----e-EEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEEEEeCCCCcEEE--
Confidence 3567888999999999976321 1 1233346788999999999998 66 55566899999999865432211
Q ss_pred eeeeeccCccEEEEEeeCCCCCEEEEEe-cCCcEEEEECCCCcccccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEE
Q 015484 208 MHVYEAHESVVEDVSWHLKNENLFGSAG-DDCQLMIWDLRTNQTQQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVA 284 (406)
Q Consensus 208 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~ 284 (406)
.....+...+..++|+|+ ++++++++ .++.+.+|+.......... ..+...+.++.++|++..++.....+..|.
T Consensus 76 -~~~~~~~~~p~~l~~spD-g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~ 153 (333)
T d1ri6a_ 76 -AAESALPGSLTHISTDHQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 153 (333)
T ss_dssp -EEEEECSSCCSEEEECTT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred -eeecccCCCceEEEEcCC-CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceee
Confidence 112234456778999994 55555555 6788999988765543332 345667888999999994444444566899
Q ss_pred EEeCCCCCCCcE-----EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe----
Q 015484 285 LFDMRKMTVPLH-----ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH---- 355 (406)
Q Consensus 285 vwd~~~~~~~~~-----~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---- 355 (406)
+|+......... ...........++|++++..++.+....+...+|++........ .....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~ 223 (333)
T d1ri6a_ 154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE----------CVQTLDMMP 223 (333)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE----------EEEEEECSC
T ss_pred EEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee----------eeeeeeeee
Confidence 999876543211 12234456789999999986666666778889998765332211 11111
Q ss_pred --cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 356 --GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 356 --~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.........++++++++++++++..++.+.+|++...
T Consensus 224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~ 262 (333)
T d1ri6a_ 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 262 (333)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence 1123456778999999988888888899999988654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=2.4e-15 Score=132.51 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=136.5
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-----CCeeEEEecCCCCCeEEEec--
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-----KEGYGLSWSPFKEGYLVSGS-- 186 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~-- 186 (406)
+...+..++|+|+|+.++++++.++.|.+||+.+.+. ...+..+. ..+..++|+|+++ +++++.
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--------~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~ 102 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--------LGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESP 102 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--------EEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEE
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--------EEEEecCCCcccccceeeEEEcCCCc-EEEEeecC
Confidence 4466889999999966667888899999999988432 34444332 3455899999998 777665
Q ss_pred ----------CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc--
Q 015484 187 ----------HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-- 254 (406)
Q Consensus 187 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 254 (406)
.++.+.+||..++... ..+. +...+..++|+| ++.++++++. .+.+||..+++....+
T Consensus 103 ~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~~-~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~ 172 (337)
T d1pbyb_ 103 VRLELTHFEVQPTRVALYDAETLSRR------KAFE-APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPI 172 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEEE------EEEE-CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECS
T ss_pred CcceeeeccccccceeeccccCCeEE------Eecc-ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeec
Confidence 3577888988875432 2222 345678899998 5666666654 4677887654322111
Q ss_pred ----------------------------------------------------------------cccCCCeeEEEecCCC
Q 015484 255 ----------------------------------------------------------------KAHEKEVNYLSFNPYN 270 (406)
Q Consensus 255 ----------------------------------------------------------------~~~~~~v~~i~~~~~~ 270 (406)
..+...+..+.++|++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (337)
T d1pbyb_ 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252 (337)
T ss_dssp TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS
T ss_pred CCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc
Confidence 1122334455666766
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRI 335 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~ 335 (406)
. +++++ ++.|++||+.+.+. +..+. +...+.+++|+|+|+ .|++++.|+.|+|||..+.
T Consensus 253 ~-~~~~~--~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 253 T-RAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp S-EEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSC-EEEEESBSSEEEEEETTTC
T ss_pred e-EEEEc--cccEEEEECCCCcE-EEEEc-CCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence 6 55544 47899999998664 44443 567789999999998 5888999999999999873
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.59 E-value=1.8e-13 Score=120.66 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=133.7
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCC------CCCeeEEEecCCCCCeEEE
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH------DKEGYGLSWSPFKEGYLVS 184 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s 184 (406)
.+.|...+.+++|+|++..+++++..++.|++||+.+... ...+... ...+..++|+|+|+ ++++
T Consensus 35 ~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~--------~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v 105 (346)
T d1jmxb_ 35 VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--------TFHANLSSVPGEVGRSMYSFAISPDGK-EVYA 105 (346)
T ss_dssp ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--------EEEEESCCSTTEEEECSSCEEECTTSS-EEEE
T ss_pred EcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee--------eeeecccccccccCCceEEEEEecCCC-EEEE
Confidence 4567778999999999976678888899999999988533 2222211 12356789999988 6666
Q ss_pred ec------------CCCeEEEEeCCCccCCceeeee-----------------------------------eeeeccCcc
Q 015484 185 GS------------HDNKICLWDVSALAQDKVIDAM-----------------------------------HVYEAHESV 217 (406)
Q Consensus 185 ~~------------~dg~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ 217 (406)
++ .++.+.+|+..++.....+... ..+.. ...
T Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 184 (346)
T d1jmxb_ 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL-RNW 184 (346)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECS-TTC
T ss_pred EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEec-CCC
Confidence 54 4677888887765432211100 00000 011
Q ss_pred EEEEEeeCCCCCE-------------------------EEEEecCCcEEEEECCCCccccc-ccccCCCeeEEEecCCCC
Q 015484 218 VEDVSWHLKNENL-------------------------FGSAGDDCQLMIWDLRTNQTQQR-VKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 218 i~~i~~~p~~~~~-------------------------l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~i~~~~~~~ 271 (406)
...+.++|.+..+ ++++..++.+.+||+.++..... ...+...+..+.+++++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (346)
T d1jmxb_ 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264 (346)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC
Confidence 1112223321111 11223344567777776665433 345677788899999888
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 272 WVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 272 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.++.+. ++.|.+||..+.+. +..+. +...+.+++|+|+|+. |++++.|+.|+|||..+
T Consensus 265 -~~~~~~-~~~v~v~d~~~~~~-~~~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 265 -NQIYGV-LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp -TEEEEE-ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTT
T ss_pred -EEEEec-CCeEEEEECCCCcE-EEEEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECcc
Confidence 455444 35799999988654 44443 4567999999999985 78889999999999987
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=1.3e-13 Score=122.37 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=146.2
Q ss_pred CceeEEEEcCCCCcEEEE---------EeCCCeEEEEeCCCccccccCCCCCceeeeCC-------CCCeeEEEecCCCC
Q 015484 116 GEVNRARCMPQKPNLVGT---------KTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGH-------DKEGYGLSWSPFKE 179 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~---------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~ 179 (406)
+....++|+|+++.+.++ +..++.|++||..+... ...+..+ ......++|++++.
T Consensus 47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 118 (355)
T d2bbkh_ 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--------TADIELPDAPRFLVGTYPWMTSLTPDGK 118 (355)
T ss_dssp CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--------EEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE--------EEEEecCCcceeecCCCCceEEEecCCC
Confidence 344579999999654443 23478999999988432 2222222 12345789999998
Q ss_pred CeEEEe--cCCCeEEEEeCCCccCCceeeeeeeeeccC-------ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 180 GYLVSG--SHDNKICLWDVSALAQDKVIDAMHVYEAHE-------SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 180 ~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
+++.+ +.+..+.+|+..+++....+ ..+. .....+.+++++..+++....++.+.+++......
T Consensus 119 -~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~ 191 (355)
T d2bbkh_ 119 -TLLFYQFSPAPAVGVVDLEGKAFKRML------DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP 191 (355)
T ss_dssp -EEEEEECSSSCEEEEEETTTTEEEEEE------ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC
T ss_pred -eeEEecCCCCceeeeeecCCCcEeeEE------ecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc
Confidence 66555 45678999999886432221 1111 11223344443333333333444444444433222
Q ss_pred cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCc-EEecCCC----------CCeEEEEEcCCCCCEEE
Q 015484 251 QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPL-HILSSHT----------EEVFQVEWDPNHETVLA 319 (406)
Q Consensus 251 ~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~h~----------~~v~~i~~~p~~~~~l~ 319 (406)
.+...+....+.+.+. .++.++.++.+++|++....... .....+. .....++++|++..+++
T Consensus 192 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~ 265 (355)
T d2bbkh_ 192 -----EDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265 (355)
T ss_dssp -----TTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred -----eecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence 2333455566777777 78888999999999998754311 1111111 22345788899875444
Q ss_pred EEeCC---------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeC
Q 015484 320 SSADD---------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQM 389 (406)
Q Consensus 320 s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~ 389 (406)
+.... ..|.+||..+. +.+..+. +...+.+++|+|+|+. ++++++.|+.|++||+
T Consensus 266 ~~~~~~~~~~~~~~~~v~v~d~~t~--------------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 266 LVDQRDEWRHKTASRFVVVLDAKTG--------------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred EeccCCceeecCCCCeEEEEeCCCC--------------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 33322 36999998872 2233322 2345889999999985 5677788999999999
Q ss_pred CCccc
Q 015484 390 TDSIY 394 (406)
Q Consensus 390 ~~~~~ 394 (406)
.++..
T Consensus 331 ~tg~~ 335 (355)
T d2bbkh_ 331 ESGEE 335 (355)
T ss_dssp TTCCE
T ss_pred CCCCE
Confidence 98864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.56 E-value=6.2e-12 Score=112.25 Aligned_cols=184 Identities=9% Similarity=-0.059 Sum_probs=116.8
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
...++.++|++...+++.+.||.+.+|+.........................+.+.+ ...++..+.++.+.+|+...
T Consensus 166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISA 243 (373)
T ss_pred cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--CceEEEecCCceEEEEEcCC
Confidence 3456788888886778899999999999887644322211111111112233344443 45556777889999999876
Q ss_pred Cccccc--cccc----------CCCeeEEEecCCCCc---------EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeE
Q 015484 248 NQTQQR--VKAH----------EKEVNYLSFNPYNEW---------VLATASSDTTVALFDMRKMTVPLHILSSHTEEVF 306 (406)
Q Consensus 248 ~~~~~~--~~~~----------~~~v~~i~~~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 306 (406)
...... .... ......+++++++.. .+++...++.+.+||..+++. +..+ .+...+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-~~~~-~~~~~~~ 321 (373)
T d2madh_ 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQI-SLGHDVD 321 (373)
T ss_pred CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-EEEe-cCCCCee
Confidence 643211 1111 122334555555542 334455667899999988664 4444 3567899
Q ss_pred EEEEcCCCCCE-EEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCC
Q 015484 307 QVEWDPNHETV-LASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNK 369 (406)
Q Consensus 307 ~i~~~p~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 369 (406)
.++|+|+|+.+ +++++.|+.|++||+.+ .+.+..+.++......+++.+
T Consensus 322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~t--------------g~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGTEVLHIYDAGA--------------GDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred EEEECCCCCEEEEEEeCCCCeEEEEECCC--------------CCEEEEECCCCCCCcEEEEec
Confidence 99999999864 56888999999999987 355666666655566665543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.49 E-value=6.4e-12 Score=111.97 Aligned_cols=298 Identities=9% Similarity=0.085 Sum_probs=167.9
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEeCCCCCCCCCCCCCCCCCCCCCeEEEEE--eecCCceeEEEEcCCCCcEEEEEeCCC
Q 015484 61 VHKFVLGTHTSEDFPNFLMIADAVLPTKDSESNVGGKNENPVIPKVEIAQK--IRVDGEVNRARCMPQKPNLVGTKTSSC 138 (406)
Q Consensus 61 ~~~~~~gt~~~~~~~n~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~~~~~dg 138 (406)
.+.+++||++.. ..|++..+. .+. .++...+. +.....+.-|+|+|+++. |.+.. .+
T Consensus 2 ~~~l~vGtyt~~---~~i~~~~fd-----------~~~-----~~l~~~~~~~~~~~~~~s~la~s~d~~~-ly~~~-~~ 60 (365)
T d1jofa_ 2 LHHLMIGTWTPP---GAIFTVQFD-----------DEK-----LTCKLIKRTEIPQDEPISWMTFDHERKN-IYGAA-MK 60 (365)
T ss_dssp EEEEEEEESSSS---CEEEEEEEE-----------TTT-----TEEEEEEEEECCTTCCCSEEEECTTSSE-EEEEE-BT
T ss_pred ceEEEEEeecCC---CCEEEEEEc-----------CCC-----CeEEEeeeeeccCCCCCCEEEEcCCCCE-EEEEe-CC
Confidence 368999999743 347765544 222 34554443 446667888999999954 44443 45
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE-Eec-CCCeEEEEeCCCccCC----------ceee
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV-SGS-HDNKICLWDVSALAQD----------KVID 206 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~-~dg~i~iwd~~~~~~~----------~~~~ 206 (406)
.+..|.+....... .............++++++++..++ ++. ..++|..+.+...... ..-.
T Consensus 61 ~~~~~~i~~~~~~~------~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (365)
T d1jofa_ 61 KWSSFAVKSPTEIV------HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK 134 (365)
T ss_dssp EEEEEEEEETTEEE------EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE
T ss_pred cEEEEEEeCCCCeE------EEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecC
Confidence 68888777532110 1111112234557778887763223 222 2355555544321100 0000
Q ss_pred eeee-eeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc---cc--cccCCCeeEEEecCCCCcEEEEEeCC
Q 015484 207 AMHV-YEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ---RV--KAHEKEVNYLSFNPYNEWVLATASSD 280 (406)
Q Consensus 207 ~~~~-~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~--~~~~~~v~~i~~~~~~~~~l~~~~~d 280 (406)
.... .......+.++.|+|++..++++......|.+|+......+. .. .......+.++|+|+++.+.++...+
T Consensus 135 ~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~ 214 (365)
T d1jofa_ 135 NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCC
Confidence 0011 111223478999999544445444445678888765432221 11 22345678899999999666667678
Q ss_pred CcEEEEeCCCCCCCc-EE---ec--------------CCCCCeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCCc
Q 015484 281 TTVALFDMRKMTVPL-HI---LS--------------SHTEEVFQVEWDPNHETVLASSADDR-----RLMVWDLNRIGD 337 (406)
Q Consensus 281 g~i~vwd~~~~~~~~-~~---~~--------------~h~~~v~~i~~~p~~~~~l~s~~~dg-----~i~iwd~~~~~~ 337 (406)
+.|.+|++....... .. .. .+......+.++|+|++++++...+. .|..|++...+.
T Consensus 215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~ 294 (365)
T d1jofa_ 215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence 899999987654311 11 00 11123567899999986555543333 377777665322
Q ss_pred ccccccccCCCCeeEEEecCCCCCeeeEEeCC-CCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 338 EQLELDAEDGPPELLFSHGGHKAKISDFSWNK-NDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
... ...+............++++| +|++++++...++.|.+|+++...
T Consensus 295 ~~~--------~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 295 IEK--------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEE--------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eee--------EeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 110 011111122334567899998 789777777888999999987654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=1.6e-11 Score=109.63 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=145.0
Q ss_pred eEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccCCCCCceeeeCCC-------CCeeEEEecCCCCCe
Q 015484 119 NRARCMPQKPNLVGTKT----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-------KEGYGLSWSPFKEGY 181 (406)
Q Consensus 119 ~~i~~~p~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~ 181 (406)
..++|+|++.. |++.+ .++.|.+||..+... ...+..+. .....++|+|+|+ +
T Consensus 68 ~~~a~spDg~~-i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~--------~~~i~~p~~~~~~~g~~p~~~a~SpDGk-~ 137 (368)
T d1mdah_ 68 SLAVAGHSGSD-FALASTSFARSAKGKRTDYVEVFDPVTFLP--------IADIELPDAPRFSVGPRVHIIGNCASSA-C 137 (368)
T ss_dssp CEEEECTTSSC-EEEEEEEETTTTSSSEEEEEEEECTTTCCE--------EEEEEETTSCSCCBSCCTTSEEECTTSS-C
T ss_pred CcceECCCCCE-EEEEcccCccccccccCCeEEEEECCCCcE--------eeeecCCccceecccCCccceEECCCCC-E
Confidence 36899999954 55433 467899999987432 33333221 2234689999999 6
Q ss_pred EEEe-cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc------c
Q 015484 182 LVSG-SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR------V 254 (406)
Q Consensus 182 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~ 254 (406)
|+.+ ..++.+.+||+.+.+.. .....+... .+.|.+...+++.+.||.+.++++........ .
T Consensus 138 l~va~~~~~~v~~~d~~~~~~~------~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~ 207 (368)
T d1mdah_ 138 LLFFLFGSSAAAGLSVPGASDD------QLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEEE------EEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred EEEEeCCCCeEEEEECCCCcEe------EEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccc
Confidence 6555 46799999999886432 222222221 12233567777888899999998876543221 1
Q ss_pred cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-ecC----------CCCCeEEEEEcCCCCCEEEEEeC
Q 015484 255 KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHI-LSS----------HTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 255 ~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~----------h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
..+...+..+.+.+++. .+.+ ..+.+.++++......... ... .......++++|++..++++...
T Consensus 208 ~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~ 284 (368)
T d1mdah_ 208 GAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecC
Confidence 23344455677777765 4433 3456777776653321100 000 01123357888888754444332
Q ss_pred C--------CcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCc-EEEEEeCCCcEEEEeCCCccc
Q 015484 324 D--------RRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPW-VISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 324 d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+ ..|.+||..+.. .+.... +...+.+++|+|+|+. +++++..|+.|++||..++..
T Consensus 285 ~~~~~~~~~~~v~v~D~~t~~--------------~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 285 HSRSCLAAAENTSSVTASVGQ--------------TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCC--------------EEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCceeecCCceEEEEECCCCc--------------EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 2 358899988732 222222 2345889999999974 567778899999999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=4.2e-11 Score=110.51 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=59.9
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTS---------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.|...|.++.|+||+. .||.++. ++.+.|||+.+.. ...+..|...+..+.|||+|. .||
T Consensus 59 ~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---------~~~l~~~~~~~~~~~~SPDG~-~ia 127 (470)
T d2bgra1 59 EFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQ---------LITEERIPNNTQWVTWSPVGH-KLA 127 (470)
T ss_dssp TSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTE---------ECCSSCCCTTEEEEEECSSTT-CEE
T ss_pred hccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECCCCc---------ccccccCCccccccccccCcc-eee
Confidence 3557899999999995 5666543 5678999999842 334667888899999999999 787
Q ss_pred EecCCCeEEEEeCCCccC
Q 015484 184 SGSHDNKICLWDVSALAQ 201 (406)
Q Consensus 184 s~~~dg~i~iwd~~~~~~ 201 (406)
.. .++.+.+|+...+..
T Consensus 128 ~~-~~~~l~~~~~~~g~~ 144 (470)
T d2bgra1 128 YV-WNNDIYVKIEPNLPS 144 (470)
T ss_dssp EE-ETTEEEEESSTTSCC
T ss_pred Ee-ecccceEEECCCCce
Confidence 76 567899999887643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.32 E-value=4.4e-11 Score=107.03 Aligned_cols=249 Identities=7% Similarity=0.037 Sum_probs=151.5
Q ss_pred cEEEEEeCCCeEEEEeCCCcccccc----------------------CCCCCceeeeCCCCCeeEEEecCCCCCeEEEec
Q 015484 129 NLVGTKTSSCEVYVFDCAKQAEKQQ----------------------DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 129 ~~l~~~~~dg~i~iw~~~~~~~~~~----------------------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 186 (406)
..+++|+.+|+|+||++........ ...........|.-.......+|+|+.++++..
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 3477888899999999876532210 000000011123334555667889983345556
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcE------------------EEEECCCC
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQL------------------MIWDLRTN 248 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i------------------~i~d~~~~ 248 (406)
.+++|.++|+.+.+....+. ..+...+..++|+|++...++++..+..+ ..+|..+.
T Consensus 92 ~~~rVavIDl~t~k~~~ii~-----iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITH-----IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEE-----CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred CCCEEEEEECCCCcEeeEEe-----cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 78899999999875432211 13456789999998655544444443333 45788777
Q ss_pred cccccccccCCCeeEEEecCCCCcEEEEEeCC-----------------------------------------CcEEEEe
Q 015484 249 QTQQRVKAHEKEVNYLSFNPYNEWVLATASSD-----------------------------------------TTVALFD 287 (406)
Q Consensus 249 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d-----------------------------------------g~i~vwd 287 (406)
+...++.. ......+.++|+|++ +++.+.+ +.+.+++
T Consensus 167 ~v~~qI~v-~~~p~~v~~spdGk~-a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~ 244 (441)
T d1qnia2 167 DVAWQVIV-DGNLDNTDADYTGKY-ATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG 244 (441)
T ss_dssp SEEEEEEE-SSCCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred eeeEEEec-CCCccceEECCCCCE-EEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence 76666543 345678999999994 4444322 2333333
Q ss_pred CCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEe
Q 015484 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSW 367 (406)
Q Consensus 288 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 367 (406)
... ...+..+.... ....+.++|+|+++++++..+++|.|||+.+..+.... .......+.......-.....+|
T Consensus 245 ~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~---~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 245 RGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED---KIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp SSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT---SSCGGGGEEECCBCCSCEEEEEE
T ss_pred ccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc---cCCcceEEEeecccccCccccee
Confidence 332 22344454433 35789999999988888999999999999763321110 01111122211111223455689
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCC
Q 015484 368 NKNDPWVISSVADDNTVQVWQMT 390 (406)
Q Consensus 368 s~~~~~~l~s~~~dg~i~iw~~~ 390 (406)
+++|. .+.+...|..|..|++.
T Consensus 320 d~~g~-~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 320 DGRGN-AYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp CSSSE-EEEEETTTTEEEEEEHH
T ss_pred cCCce-EEEcccccceEEEeccc
Confidence 99987 78888999999999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.31 E-value=1.3e-11 Score=110.49 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=150.5
Q ss_pred ecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee-CCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 113 RVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK-GHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 113 ~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
.|.-......+.|+|+.++++...++.|.++|+.+.+. ...+. .+.....+++|+|+++...+++..+..+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~--------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT--------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE--------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE--------eeEEecCCCCCccceEEeccCCEEEEEeccCCcc
Confidence 35556666777899976667777899999999998432 33332 4567889999999887434443333333
Q ss_pred ------------------EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-----------------
Q 015484 192 ------------------CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD----------------- 236 (406)
Q Consensus 192 ------------------~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~----------------- 236 (406)
..+|..+.... ..... ......+.|+|+ ++++++++.
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~------~qI~v-~~~p~~v~~spd-Gk~a~vt~~nse~~~~id~~t~~~~d 212 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVA------WQVIV-DGNLDNTDADYT-GKYATSTCYNSERAVDLAGTMRNDRD 212 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEE------EEEEE-SSCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSBC
T ss_pred cccCcccccccccccceEEeecCccceee------EEEec-CCCccceEECCC-CCEEEEEecCCCceEEEeccCcceEE
Confidence 33555543221 11111 234677888884 444444432
Q ss_pred ------------------------CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 237 ------------------------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 237 ------------------------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
++.+.+++....+.+..+..... ...+.++|+|+++++++..+++|.+||+.+..
T Consensus 213 ~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 213 WVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp EEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred EEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence 23444444444444555544433 46799999999777888889999999987532
Q ss_pred C-------CcEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEe-----cC
Q 015484 293 V-------PLHILSS---HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSH-----GG 357 (406)
Q Consensus 293 ~-------~~~~~~~---h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 357 (406)
. +...+.+ ..-.....+|.+++. .+.+...|..|..|++......... +.....+... .|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~~~~~~~~~----~~~~~v~~~~~v~y~~G 366 (441)
T d1qnia2 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIADAIKHYNG----DRVNYIRQKLDVQYQPG 366 (441)
T ss_dssp HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHHHHHHHTT----CCCCCEEEEEECSSCEE
T ss_pred hHhhccCCcceEEEeecccccCcccceecCCce-EEEcccccceEEEeccchhhhhhcc----CCCceeEeccccccCCC
Confidence 1 0111111 122356678999985 6888889999999998531110000 0011222222 47
Q ss_pred CCCCeeeEEeCCCCCcEEEEEe
Q 015484 358 HKAKISDFSWNKNDPWVISSVA 379 (406)
Q Consensus 358 h~~~v~~~~~s~~~~~~l~s~~ 379 (406)
|...+.+.+++|+|+| |++++
T Consensus 367 H~~~~~~~t~~pdGk~-l~s~~ 387 (441)
T d1qnia2 367 HNHASLTESRDADGKW-LVVLS 387 (441)
T ss_dssp EEEETTTTSTTCCCCE-EEEEE
T ss_pred CCccccccccCCCCcE-EEecC
Confidence 8888999999999995 78883
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=2.2e-10 Score=101.01 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=119.8
Q ss_pred CceeEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccCCCCCceeeeCCCC-------CeeEEEecCCCCCeEEEec
Q 015484 116 GEVNRARCMPQKPNLVGTK--TSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDK-------EGYGLSWSPFKEGYLVSGS 186 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~l~s~~ 186 (406)
.....++|+|++.. ++++ +.+..+.+|+...... ...+..+.. ....+.+++++..+++...
T Consensus 106 ~~~~~~~~s~dg~~-~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~ 176 (355)
T d2bbkh_ 106 TYPWMTSLTPDGKT-LLFYQFSPAPAVGVVDLEGKAF--------KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 176 (355)
T ss_dssp CCGGGEEECTTSSE-EEEEECSSSCEEEEEETTTTEE--------EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCceEEEecCCCe-eEEecCCCCceeeeeecCCCcE--------eeEEecCCcceEeecCCcceEEEcCCCCEEEEEec
Confidence 34566899999954 4443 4567899999987432 233332221 1223445555542233333
Q ss_pred CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--ccc---------
Q 015484 187 HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RVK--------- 255 (406)
Q Consensus 187 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~--------- 255 (406)
.++.+.+++..... ..+...+....+.+ .+..++.++.++.+++|++..++... ...
T Consensus 177 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (355)
T d2bbkh_ 177 TEGTPEITHTEVFH-----------PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 244 (355)
T ss_dssp SSSCCEEEECCCCS-----------CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCeEEEEeccccc-----------ceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEee
Confidence 34444444433321 12334455567776 56777788999999999998765421 111
Q ss_pred -ccCCCeeEEEecCCCCcEEEEEeCC----------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC-EEEEEeC
Q 015484 256 -AHEKEVNYLSFNPYNEWVLATASSD----------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSAD 323 (406)
Q Consensus 256 -~~~~~v~~i~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~l~s~~~ 323 (406)
........+++++++. .++....+ ..|.+||..+.+. +..+. +...+.+++|+|+|+. ++++++.
T Consensus 245 ~~~p~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~v~~~~ 321 (355)
T d2bbkh_ 245 GWRPGGWQQVAYHRALD-RIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE-MGHEIDSINVSQDEKPLLYALSTG 321 (355)
T ss_dssp TEEECSSSCEEEETTTT-EEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred eeeccceEEEEEeCCCC-eEEEEeccCCceeecCCCCeEEEEeCCCCcE-EEEec-CCCCEEEEEEcCCCCeEEEEEECC
Confidence 1112334588999988 44443322 3699999998664 55554 3456889999999976 4567778
Q ss_pred CCcEEEEeCCC
Q 015484 324 DRRLMVWDLNR 334 (406)
Q Consensus 324 dg~i~iwd~~~ 334 (406)
|+.|.+||+.+
T Consensus 322 d~~i~v~D~~t 332 (355)
T d2bbkh_ 322 DKTLYIHDAES 332 (355)
T ss_dssp TTEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=7.3e-09 Score=87.42 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=135.4
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSC--EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...+...+..-+|+|+|+.+..+....+ .+.+.+.... ....+..+........|+|++..+++....+
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~ 104 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------AVRQVASFPRHNGAPAFSPDGSKLAFALSKT 104 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------CEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---------ceeEEeeeecccccceecCCCCeeeEeeecC
Confidence 3466788899999999965444444444 3555555442 2345666778889999999998444444444
Q ss_pred CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCc--EEEEECCCCcccccccccCCCeeEEEe
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQ--LMIWDLRTNQTQQRVKAHEKEVNYLSF 266 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~i~~ 266 (406)
+...++......... ..............+++.....+++...+|. |.+.++..+.. ..+...........|
T Consensus 105 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 178 (269)
T d2hqsa1 105 GSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADV 178 (269)
T ss_dssp SSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEE
T ss_pred Cccceeecccccccc-----eeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccccc
Confidence 444444333222111 1111233334445566655556666666664 55555555433 223334566777899
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC--CcEEEEeCCCCCcccccccc
Q 015484 267 NPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD--RRLMVWDLNRIGDEQLELDA 344 (406)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~ 344 (406)
+|++..++.+....+...+|....... ......+........|+|+|+.++.+.... ..|.++++..
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg---------- 247 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATG-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG---------- 247 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTC-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----------
T ss_pred ccccceeEEEeecCCceeeeEeecccc-cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC----------
Confidence 999996666666666555555444333 234444566778889999999765555433 4577888765
Q ss_pred cCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 345 EDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 345 ~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.....+......+...+|+|-
T Consensus 248 -----~~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 248 -----RFKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp -----CCEEECCCSSSEEEEEEECCC
T ss_pred -----CCEEEEeCCCCcEEeEEeCCC
Confidence 222333444556788899984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=7.3e-09 Score=87.14 Aligned_cols=241 Identities=7% Similarity=0.007 Sum_probs=148.8
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEE
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICL 193 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i 193 (406)
+.-....|++.+++..+++..+..+.+..++....... .....+ .....++++++++. ++++....+.+++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-------~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-------VLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTL 82 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-------ECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-------EeccCC-ccCceEEEEcCCCC-EEEeeeeeceeee
Confidence 33456899999998544545556677877776653211 111111 23356889999887 7777766666666
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
++-..... . ... .......++++.+ +++++++-..+..+..++...................++++|++. +
T Consensus 83 ~~~~~~~~---~---~~~-~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~ 153 (260)
T d1rwia_ 83 AAGSNNQT---V---LPF-DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V 153 (260)
T ss_dssp CTTCSCCE---E---CCC-CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-E
T ss_pred eeecccee---e---eee-eeeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-E
Confidence 55433211 1 111 1224578899988 567877777777788887665443222222234557899999988 7
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEE
Q 015484 274 LATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLF 353 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (406)
+++...++.|..+|...... .......-.....|++.+++. ++++....+.|..++...... .+.
T Consensus 154 ~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~-------------~~~ 218 (260)
T d1rwia_ 154 YVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS-------------TVL 218 (260)
T ss_dssp EEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCC-------------EEC
T ss_pred eeecccccccccccccccee-eeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeE-------------EEE
Confidence 77777788899999875432 222223446678999999985 777777788888887654111 111
Q ss_pred EecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeC
Q 015484 354 SHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQM 389 (406)
Q Consensus 354 ~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~ 389 (406)
....-.....|+++++|. ++++-..++.|+..+.
T Consensus 219 -~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 219 -PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTS 252 (260)
T ss_dssp -CCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred -ccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeC
Confidence 111234578999999997 7777666676665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.19 E-value=1.1e-08 Score=88.06 Aligned_cols=241 Identities=6% Similarity=0.052 Sum_probs=158.6
Q ss_pred eEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe
Q 015484 106 VEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 106 ~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 185 (406)
.++...++-...+..+++.|+| +++++...+++|+.++.... ...+......+.+++|+++|. ++++.
T Consensus 18 ~~v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~----------~~~~~~~~~~~~gla~~~dG~-l~v~~ 85 (302)
T d2p4oa1 18 AKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGN----------QQIHATVEGKVSGLAFTSNGD-LVATG 85 (302)
T ss_dssp EEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC----------EEEEEECSSEEEEEEECTTSC-EEEEE
T ss_pred ccEEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCCC----------EEEEEcCCCCcceEEEcCCCC-eEEEe
Confidence 4555666655678899999999 68889888999988886542 233445567889999999998 88888
Q ss_pred cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc----------c
Q 015484 186 SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----------K 255 (406)
Q Consensus 186 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~ 255 (406)
..++.+..++....... ...+.. .......+.+++.+ +++++++.+.++.+..+|...+...... .
T Consensus 86 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (302)
T d2p4oa1 86 WNADSIPVVSLVKSDGT--VETLLT-LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE 161 (302)
T ss_dssp ECTTSCEEEEEECTTSC--EEEEEE-CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred cCCceEEEEEecccccc--eeeccc-cCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence 88888888887653321 111111 12345688999998 6788888888888988888765422111 1
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
........+.++ +..++++.+..+.|..++....... .............+++.++|. +.++...++.|..++...
T Consensus 162 ~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 162 SVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp CCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC
T ss_pred Cccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCC
Confidence 122345566665 3447777778889999988754321 111111234466799999996 677777889999987653
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEe---CCCCCcEEEEE
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSW---NKNDPWVISSV 378 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---s~~~~~~l~s~ 378 (406)
. ...+..........++++| +++++.++++.
T Consensus 239 ~-------------~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 239 S-------------TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp C-------------EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred C-------------EEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 1 1122222223345789999 66777444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.5e-08 Score=84.03 Aligned_cols=224 Identities=9% Similarity=0.020 Sum_probs=135.3
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCC--eEEEEeCCCccCCceeeeeeeeeccC
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDN--KICLWDVSALAQDKVIDAMHVYEAHE 215 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 215 (406)
.|+|.|.... ....+..+...+...+|||+|+ .||-.. ..+ .+.+.+...+.. ..+..+.
T Consensus 20 ~l~i~d~dG~---------~~~~l~~~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 82 (269)
T d2hqsa1 20 ELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-------RQVASFP 82 (269)
T ss_dssp EEEEEETTSC---------SCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-------EEEECCS
T ss_pred EEEEEcCCCC---------CcEEEecCCCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCce-------eEEeeee
Confidence 5777777652 1334445567788999999999 666543 333 355555554321 2334466
Q ss_pred ccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc-cccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCCCC
Q 015484 216 SVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRKMT 292 (406)
Q Consensus 216 ~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~~~ 292 (406)
.......|+|++..++.....++...++....... ...............+++.+...+++...+|. |.+.++...
T Consensus 83 ~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~- 161 (269)
T d2hqsa1 83 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG- 161 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-
T ss_pred cccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc-
Confidence 77888999996555555554554444443332221 22222234444556777877766676666664 445555543
Q ss_pred CCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCC
Q 015484 293 VPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDP 372 (406)
Q Consensus 293 ~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 372 (406)
.......+........|+|++..++......+...+|....... .. ....+........|+|+|+
T Consensus 162 -~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~-------------~~-~~~~~~~~~~~p~~SPDG~ 226 (269)
T d2hqsa1 162 -APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-------------GV-QVLSSTFLDETPSLAPNGT 226 (269)
T ss_dssp -CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-------------CE-EECCCSSSCEEEEECTTSS
T ss_pred -cceeeecccccccccccccccceeEEEeecCCceeeeEeecccc-------------cc-eEeecCccccceEECCCCC
Confidence 34555566677888899999997666666677766666543211 11 1122344567889999999
Q ss_pred cEEEEEeCC--CcEEEEeCCCcccC
Q 015484 373 WVISSVADD--NTVQVWQMTDSIYR 395 (406)
Q Consensus 373 ~~l~s~~~d--g~i~iw~~~~~~~~ 395 (406)
+++.+.... ..|.++++..+...
T Consensus 227 ~i~f~s~~~~~~~l~~~~~dg~~~~ 251 (269)
T d2hqsa1 227 MVIYSSSQGMGSVLNLVSTDGRFKA 251 (269)
T ss_dssp EEEEEEEETTEEEEEEEETTSCCEE
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEE
Confidence 766655433 45788899877543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.02 E-value=3.4e-09 Score=94.11 Aligned_cols=200 Identities=10% Similarity=-0.006 Sum_probs=119.1
Q ss_pred eeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCC
Q 015484 118 VNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVS 197 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~ 197 (406)
...++|+|+|+.++++...++.+.+||+..... ...+..+... .+.+.+...+++.+.||.+.++++.
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~--------~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------DQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------EEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECC
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcE--------eEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEec
Confidence 456899999976555555789999999988432 3334433322 1233344477778888998888877
Q ss_pred CccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCccccc----------c--cccCCCeeEEE
Q 015484 198 ALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQR----------V--KAHEKEVNYLS 265 (406)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~--~~~~~~v~~i~ 265 (406)
.............+..+...+....+.+ .+..+. ...+.+.+++...+..... . .........++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 270 (368)
T d1mdah_ 194 AAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred CCceeeeeeecccccccccceeeccccc-CcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE
Confidence 6543322211112222333444555555 333332 3345566666554432211 1 01112234578
Q ss_pred ecCCCCcEEEEEeCC--------CcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCcEEEEeCCC
Q 015484 266 FNPYNEWVLATASSD--------TTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHET-VLASSADDRRLMVWDLNR 334 (406)
Q Consensus 266 ~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~-~l~s~~~dg~i~iwd~~~ 334 (406)
++|++..+++....+ ..|.+||..+++. +..+. +...+..++|+|+++. +++++..|+.|.+||..+
T Consensus 271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t 346 (368)
T d1mdah_ 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE-eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence 888888444433222 2589999998754 44443 3456889999999975 456777899999999987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=2.4e-07 Score=78.46 Aligned_cols=247 Identities=13% Similarity=0.153 Sum_probs=156.2
Q ss_pred eEEEEEeecCC-------ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeee------CCCCCeeEE
Q 015484 106 VEIAQKIRVDG-------EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLK------GHDKEGYGL 172 (406)
Q Consensus 106 ~~~~~~~~h~~-------~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l 172 (406)
+...++++..+ ....|++.|++ +++++-.....|++||.+... +..+. +....-..+
T Consensus 6 ~~~~~~~G~~G~~~g~f~~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~~---------~~~~~~~~~~~~~~~~p~~~ 75 (279)
T d1q7fa_ 6 MIYHCKFGEFGVMEGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRF---------KFQFGECGKRDSQLLYPNRV 75 (279)
T ss_dssp ECEEEEECCBSSSTTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCE---------EEEECCBSSSTTCBSSEEEE
T ss_pred EEEEeecCCCcCCCCeECCccEEEEcCCC-CEEEEECCCCEEEEEeCCCCE---------EEEecccCCCcccccccccc
Confidence 34455565432 36889999988 577777778899999976421 11111 111223456
Q ss_pred EecCCCCCeEEE-ecCCCeEEEEeCCCccCCceeeeeeeee-ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcc
Q 015484 173 SWSPFKEGYLVS-GSHDNKICLWDVSALAQDKVIDAMHVYE-AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQT 250 (406)
Q Consensus 173 ~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 250 (406)
++.++....+++ .+.++.|..++.... . ...+. ........+++.+ ++.++++....+.+.+++.. ++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~-~------~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~ 146 (279)
T d1q7fa_ 76 AVVRNSGDIIVTERSPTHQIQIYNQYGQ-F------VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNV 146 (279)
T ss_dssp EEETTTTEEEEEECGGGCEEEEECTTSC-E------EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccccccccceeccCCcccccccccccc-c------eeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cce
Confidence 655544424443 345567777775432 1 11121 2234567888887 56777777777888888854 444
Q ss_pred cccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEec--CCCCCeEEEEEcCCCCCEEEEEe-CCC
Q 015484 251 QQRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILS--SHTEEVFQVEWDPNHETVLASSA-DDR 325 (406)
Q Consensus 251 ~~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~i~~~p~~~~~l~s~~-~dg 325 (406)
+..+ ..+......+++.+++. ++++....+.|++||... + .+..+. +.......|++.++++ ++++-. .++
T Consensus 147 ~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~ 222 (279)
T d1q7fa_ 147 LHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNF 222 (279)
T ss_dssp EEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSC
T ss_pred eecccccccccccceeeecccee-EEeeeccccceeeeecCC-c-eeeeecccccccCCcccccccCCe-EEEEECCCCc
Confidence 4444 33456678899999887 788888888999999764 2 244442 3445688999999997 566644 345
Q ss_pred cEEEEeCCCCCcccccccccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 326 RLMVWDLNRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.|.+|+... +++..+ .........|++.|+|. ++++ +.++.|++|+...-
T Consensus 223 ~v~~f~~~G---------------~~~~~~~~~~~~~~p~~vav~~dG~-l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 223 NLTIFTQDG---------------QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEECTTS---------------CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCC
T ss_pred EEEEECCCC---------------CEEEEEeCCCCCCCEeEEEEeCCCc-EEEE-eCCCeEEEEEeeee
Confidence 799998542 333332 22234578999999997 5554 56899999987653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.92 E-value=2.5e-09 Score=98.33 Aligned_cols=153 Identities=15% Similarity=0.222 Sum_probs=105.7
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---------cCCcE
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---------DDCQL 240 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---------~dg~i 240 (406)
..+.|.+++. ++.. .++.|.+||+.+++....+. -..+..+...|.++.|+| +++.|+.++ .++.+
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEEC-TTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEc-hhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceE
Confidence 3678999876 6654 47889999999876532221 123455667899999999 566666654 35678
Q ss_pred EEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC------------------CC
Q 015484 241 MIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS------------------HT 302 (406)
Q Consensus 241 ~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------h~ 302 (406)
.+||+.+++. ..+..+...+..+.|+|+|. .+|.. .++.+++|+...+.. ...... ..
T Consensus 95 ~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~ 170 (470)
T d2bgra1 95 DIYDLNKRQL-ITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVF 170 (470)
T ss_dssp EEEETTTTEE-CCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCcc-cccccCCccccccccccCcc-eeeEe-ecccceEEECCCCce-eeeeeccCCCcccccccceeeeeeec
Confidence 9999998774 55667888899999999999 66665 467899999987654 322211 12
Q ss_pred CCeEEEEEcCCCCCEEEEEeCC-CcEEEEeC
Q 015484 303 EEVFQVEWDPNHETVLASSADD-RRLMVWDL 332 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~d-g~i~iwd~ 332 (406)
+....+.|+|+|++ |+....| ..+..|.+
T Consensus 171 ~~~~~~~wSPDGk~-ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 171 SAYSALWWSPNGTF-LAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred CCccccEECCCCCc-cceeEecCCcCceEEE
Confidence 23456889999986 6665543 33554443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.90 E-value=7.8e-06 Score=70.28 Aligned_cols=244 Identities=7% Similarity=0.009 Sum_probs=146.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC----CCeE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH----DNKI 191 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i 191 (406)
..+-.++|.+++ ++.++-...+.|+.|+...... ............+++++++|. ++++... .+.+
T Consensus 40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~--------~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i 109 (319)
T d2dg1a1 40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI--------KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGI 109 (319)
T ss_dssp CCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE--------EEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEE
T ss_pred cCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeE--------EEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeE
Confidence 445789999998 5777777889998888766311 223334455678999999987 6665432 2334
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCeeEEE
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEVNYLS 265 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~ 265 (406)
...+......... ..........+.+++.+ +++++++... .+.+..++...+ .+..+...-...+.++
T Consensus 110 ~~~~~~~~~~~~~----~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia 183 (319)
T d2dg1a1 110 FAATENGDNLQDI----IEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIA 183 (319)
T ss_dssp EEECTTSCSCEEE----ECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEE
T ss_pred EEEcCCCceeeee----ccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeee
Confidence 4444443321111 10011133578899998 5677665432 233555554433 2333322334467899
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEE-------ecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 015484 266 FNPYNEWVLATASSDTTVALFDMRKMTVPLHI-------LSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDE 338 (406)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 338 (406)
|+|+++.++++-+..+.|..||+......... ..........+++.++|+ +.++....+.|.+||-..
T Consensus 184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G---- 258 (319)
T d2dg1a1 184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG---- 258 (319)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTS----
T ss_pred eccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCC----
Confidence 99999856666677889999998754322211 111123357899999996 777878899999999642
Q ss_pred cccccccCCCCeeEEEec------CCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCC
Q 015484 339 QLELDAEDGPPELLFSHG------GHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTD 391 (406)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~ 391 (406)
+++..+. ++...+++++|.+.+..++++... .+.-.||.+..
T Consensus 259 -----------~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 259 -----------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp -----------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred -----------cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 2222221 344568899999987755555431 23344554443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.87 E-value=1.7e-06 Score=74.36 Aligned_cols=249 Identities=10% Similarity=0.080 Sum_probs=146.3
Q ss_pred CceeEEEEcCCCCcEEEEEeC-------CCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCC
Q 015484 116 GEVNRARCMPQKPNLVGTKTS-------SCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHD 188 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 188 (406)
...-.++|.|+|. ++++... +|+|..|+..+...... . ..........-..++|.+++. .|+++...
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~--~--~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~ 91 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI--C--KPEVNGYGGIPAGCQCDRDAN-QLFVADMR 91 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE--E--CCEETTEECCEEEEEECSSSS-EEEEEETT
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEE--E--CCccccCCCcceeEEEeCCCC-EEEEEECC
Confidence 3466789999994 5544322 46788888776322100 0 000001112356899999987 77777777
Q ss_pred CeEEEEeCCCccCCceeeeeeeeecc-CccEEEEEeeCCCCCEEEEEec---------------CCcEEEEECCCCcccc
Q 015484 189 NKICLWDVSALAQDKVIDAMHVYEAH-ESVVEDVSWHLKNENLFGSAGD---------------DCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 189 g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~ 252 (406)
+.|...+........ + .....+. -...+++++.+ ++++.++-.. .|.|..++.. ++...
T Consensus 92 ~~i~~~~~~g~~~~~-~--~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~ 166 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEI-A--KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp TEEEEEETTSCEEEC-C--SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred CeEEEEeCCCcEEEE-E--eccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE
Confidence 778888876532110 0 0000111 11357789998 5677665321 2345444432 22222
Q ss_pred cccccCCCeeEEEecCCCC----cEEEEEeCCCcEEEEeCCCCCCC-----cEEecC-CCCCeEEEEEcCCCCCEEEEEe
Q 015484 253 RVKAHEKEVNYLSFNPYNE----WVLATASSDTTVALFDMRKMTVP-----LHILSS-HTEEVFQVEWDPNHETVLASSA 322 (406)
Q Consensus 253 ~~~~~~~~v~~i~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~-h~~~v~~i~~~p~~~~~l~s~~ 322 (406)
+...-..-+.++|+|++. .++++-+..+.|..||+...... ...+.. +......+++..+|+ +.++..
T Consensus 167 -~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~ 244 (314)
T d1pjxa_ 167 -VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW 244 (314)
T ss_dssp -EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE
T ss_pred -eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEc
Confidence 222233346789988764 35566667788999987643321 111111 223457899999996 677777
Q ss_pred CCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCC
Q 015484 323 DDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTD 391 (406)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~ 391 (406)
..+.|.+||.... .+..........+++++|.|+++.++++.+.+|.|...++..
T Consensus 245 ~~g~I~~~dp~~g--------------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 245 GSSHIEVFGPDGG--------------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCB--------------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEeCCCC--------------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 7899999987641 222222333456889999999876778888888888777654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.85 E-value=1.9e-07 Score=80.15 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=136.8
Q ss_pred CeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCC
Q 015484 168 EGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRT 247 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~ 247 (406)
.+..++++|+|+ ++++...+++|..|+..... ..+......+.+++|.| +++++++...++.+..++...
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~--------~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ--------QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTCCE--------EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEEC
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCE--------EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecc
Confidence 577899999998 99999999999888865421 22334567899999999 678888888888888888654
Q ss_pred Cccc-ccc--cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe---------cCCCCCeEEEEEcCCCC
Q 015484 248 NQTQ-QRV--KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL---------SSHTEEVFQVEWDPNHE 315 (406)
Q Consensus 248 ~~~~-~~~--~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~h~~~v~~i~~~p~~~ 315 (406)
.... ..+ .......+.+.+.+++. ++++.+.++.+..+|.......+... .........+.+.. .
T Consensus 99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~ 175 (302)
T d2p4oa1 99 SDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--N 175 (302)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--T
T ss_pred cccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--C
Confidence 4321 111 22345678999999987 77777778888888877643211111 11223466777764 3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 316 TVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 316 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.++++.+..+.|..+++....... ...... .......++++++|. ++++...++.|..++...+
T Consensus 176 ~l~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~----~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 176 FLYVSNTEKMLLLRIPVDSTDKPG--------EPEIFV----EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBC--------CCEEEE----ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC
T ss_pred ceeeecCCCCeEEecccccccccc--------cccccc----CCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC
Confidence 578888889999988876532211 011111 123467899999998 7777777899999988765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.79 E-value=3.3e-07 Score=80.82 Aligned_cols=165 Identities=12% Similarity=0.137 Sum_probs=103.5
Q ss_pred CCeeEEEecCCCCCeEEEec-CCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEEC
Q 015484 167 KEGYGLSWSPFKEGYLVSGS-HDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDL 245 (406)
Q Consensus 167 ~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~ 245 (406)
..+.++.|+|+|+ ++++++ ....|.+|+............... .........++|+|++..++++...++.|.+|++
T Consensus 145 ~h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCCCC-EEEEeeCCCCEEEEEEccCCCceeeccceee-cCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 3478999999999 666664 345788888665332211111111 1234578899999965555566777899999998
Q ss_pred CCCcccccc-------------------cccCCCeeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCCcEE----
Q 015484 246 RTNQTQQRV-------------------KAHEKEVNYLSFNPYNEWVLATASSDT-----TVALFDMRKMTVPLHI---- 297 (406)
Q Consensus 246 ~~~~~~~~~-------------------~~~~~~v~~i~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~---- 297 (406)
..++..... .........+.++|+|+.++++...+. .|..|++..... +..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~-~~~~~~~ 301 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-IEKQLFL 301 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-EEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc-eeeEeEe
Confidence 765432111 011223457899999994444433222 377787765433 211
Q ss_pred --ecCCCCCeEEEEEcC-CCCCEEEEEeCCCcEEEEeCCC
Q 015484 298 --LSSHTEEVFQVEWDP-NHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 298 --~~~h~~~v~~i~~~p-~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
.........+++++| +|++++++...++.|.+|++..
T Consensus 302 ~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 112334567899998 6776666667889999998764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.73 E-value=3.6e-06 Score=72.28 Aligned_cols=205 Identities=10% Similarity=0.153 Sum_probs=128.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC-CCeeEEEecCCCCCeEEEecC-------
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-KEGYGLSWSPFKEGYLVSGSH------- 187 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~------- 187 (406)
+....++|.+++. .+.++...+.|..++......... .....+.. ...+.+++.++|. +.++-..
T Consensus 71 g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~~~~~-----~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~ 143 (314)
T d1pjxa_ 71 GIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEEIA-----KKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPAD 143 (314)
T ss_dssp CCEEEEEECSSSS-EEEEEETTTEEEEEETTSCEEECC-----SBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSC
T ss_pred CcceeEEEeCCCC-EEEEEECCCeEEEEeCCCcEEEEE-----eccccccccCCCcEEEECCCCC-EEEecCccCccccc
Confidence 3467899999984 555566666788888765322110 00000110 1246789999887 6665321
Q ss_pred --------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCC----CEEEEEecCCcEEEEECCCCcccc---
Q 015484 188 --------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNE----NLFGSAGDDCQLMIWDLRTNQTQQ--- 252 (406)
Q Consensus 188 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~----~~l~~~~~dg~i~i~d~~~~~~~~--- 252 (406)
.|.|..++.+. + . ......-...+.++|+|++. .++++-+..+.|..||+.....+.
T Consensus 144 ~~~~~~~~~G~v~~~~~dg-~---~----~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~ 215 (314)
T d1pjxa_ 144 YTRSMQEKFGSIYCFTTDG-Q---M----IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp CCBTTSSSCEEEEEECTTS-C---E----EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE
T ss_pred ccceeccCCceEEEEeecC-c---e----eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee
Confidence 23344443321 1 1 11111223357889988533 366666788899999876433221
Q ss_pred ---cccc-cCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEE
Q 015484 253 ---RVKA-HEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLM 328 (406)
Q Consensus 253 ---~~~~-~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~ 328 (406)
.+.. .......+++.++|+ ++++....+.|.+||...... +..+......+++++|.|+++.++++.+.+|.|.
T Consensus 216 ~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~ 293 (314)
T d1pjxa_ 216 VWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEE
Confidence 1111 122346799999998 777777788999999876543 5566666678899999999887888888999999
Q ss_pred EEeCCCCCc
Q 015484 329 VWDLNRIGD 337 (406)
Q Consensus 329 iwd~~~~~~ 337 (406)
..++...+.
T Consensus 294 ~~~~~~~G~ 302 (314)
T d1pjxa_ 294 KFEWQRNGK 302 (314)
T ss_dssp EEECSSCBC
T ss_pred EEECCCCCh
Confidence 999877543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.72 E-value=5.2e-06 Score=71.43 Aligned_cols=210 Identities=9% Similarity=0.032 Sum_probs=130.6
Q ss_pred CCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec----CCcEE
Q 015484 166 DKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD----DCQLM 241 (406)
Q Consensus 166 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~----dg~i~ 241 (406)
.....+++|.++|+ +.++-...+.|..|+....... ............+++++ +++++++... .+.+.
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~------~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~ 110 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIK------RPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIF 110 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEE------EEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEE
T ss_pred CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEE------EEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEE
Confidence 34456899999887 8888778899999987764321 22223445678999998 5677766533 33455
Q ss_pred EEECCCCccccccc--ccCCCeeEEEecCCCCcEEEEEeC------CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCC
Q 015484 242 IWDLRTNQTQQRVK--AHEKEVNYLSFNPYNEWVLATASS------DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPN 313 (406)
Q Consensus 242 i~d~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~ 313 (406)
..+........... ......+.+++.++|. +.++... .+.+..++... ..+..+...-...+.|+|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~d 187 (319)
T d2dg1a1 111 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTD 187 (319)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTT
T ss_pred EEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeeccc
Confidence 55655544332221 1234577899999998 5555322 12355554432 223333333345688999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcc
Q 015484 314 HETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSI 393 (406)
Q Consensus 314 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~ 393 (406)
++.+.++-+..+.|..|++.......... ................+++.++|. +.++....+.|.+++.....
T Consensus 188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~------~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~ 260 (319)
T d2dg1a1 188 EKVLWVTETTANRLHRIALEDDGVTIQPF------GATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYP 260 (319)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEE------EEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCE
T ss_pred cceEEEecccCCceEEEEEcCCCceeccc------cceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcE
Confidence 98777777888999999987533211110 001111111222356799999998 77787888999999976543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=2.6e-06 Score=71.04 Aligned_cols=198 Identities=9% Similarity=0.028 Sum_probs=125.1
Q ss_pred CeeEEEecCCCCCeEEE-ecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECC
Q 015484 168 EGYGLSWSPFKEGYLVS-GSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLR 246 (406)
Q Consensus 168 ~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~ 246 (406)
.-.+|++.++|. ..++ .+..+.+..++...... .. .... .......+++++ +++++++....+.+++++..
T Consensus 15 ~P~~vavd~dG~-i~v~~~~~~~~i~~~~~~~~~~--~~---~~~~-~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 15 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGT--TV---LPFN-GLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEEC----CE--EE---CCCC-SCCSCCCEEECT-TCCEEEEETTTEEEEECTTC
T ss_pred CCCEEEEcCCCC-EEEEEcCCCCEEEEEcCCCceE--EE---eccC-CccCceEEEEcC-CCCEEEeeeeeceeeeeeec
Confidence 347999999887 5554 45667787776654321 11 1111 123456788888 67788777777777766655
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCc
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRR 326 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~ 326 (406)
....+.... .......+++++++. ++++-.....+..++........... ........++++|++. ++++...++.
T Consensus 87 ~~~~~~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~-~~v~~~~~~~ 162 (260)
T d1rwia_ 87 NNQTVLPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGN-VYVTDTDNNR 162 (260)
T ss_dssp SCCEECCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCC-EEEEEGGGTE
T ss_pred cceeeeeee-eeeecccccccccce-eEeeccccccccccccccceeeeeee-cccCCcceeeecCCCC-Eeeecccccc
Confidence 444333332 234568999999888 66666666678887766533211111 2234567899999986 6778888889
Q ss_pred EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 327 LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
|..++...... .............++++++|. ++++....+.|..++....
T Consensus 163 i~~~d~~~~~~--------------~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 163 VVKLEAESNNQ--------------VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EEEECTTTCCE--------------EECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS
T ss_pred cccccccccee--------------eeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC
Confidence 99998765221 111113344578899999998 7888777888888877655
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=1.9e-05 Score=66.87 Aligned_cols=226 Identities=10% Similarity=-0.007 Sum_probs=143.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
...|.+....+..+--..+.|..||..+... ........+.++++.+++. ++++ +.+ .|.++|..++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----------~~~~~~~~~~~i~~~~dg~-l~va-~~~-gl~~~d~~tg 88 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK----------TVHALPFMGSALAKISDSK-QLIA-SDD-GLFLRDTATG 88 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------EEEECSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTTC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeE----------EEEECCCCcEEEEEecCCC-EEEE-EeC-ccEEeecccc
Confidence 4568876656666666778899999887421 1222345678999988776 5554 444 5888998876
Q ss_pred cCCceeeeeeeeec--cCccEEEEEeeCCCCCEEEEEec----CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcE
Q 015484 200 AQDKVIDAMHVYEA--HESVVEDVSWHLKNENLFGSAGD----DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWV 273 (406)
Q Consensus 200 ~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 273 (406)
+.. .+..... ....++++.+.| ++++.++... .+.-.+|.+..++...... .-..-+.++|++++..+
T Consensus 89 ~~~----~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l 162 (295)
T d2ghsa1 89 VLT----LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTG 162 (295)
T ss_dssp CEE----EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEE
T ss_pred eee----EEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceE
Confidence 431 1111111 123588899998 5666655432 2344566666555433332 23456789999999867
Q ss_pred EEEEeCCCcEEEEeCCCCCC-----Cc--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccC
Q 015484 274 LATASSDTTVALFDMRKMTV-----PL--HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAED 346 (406)
Q Consensus 274 l~~~~~dg~i~vwd~~~~~~-----~~--~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (406)
+++.+..+.|..|++..... .. .......+....+++..+|. +.++.-..+.|..||-..
T Consensus 163 ~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G------------ 229 (295)
T d2ghsa1 163 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG------------ 229 (295)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC------------
T ss_pred EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCC------------
Confidence 77777788999998753211 11 11223345678999999996 566666778899999653
Q ss_pred CCCeeEEEecCCCCCeeeEEeC-CCCCcEEEEEeC
Q 015484 347 GPPELLFSHGGHKAKISDFSWN-KNDPWVISSVAD 380 (406)
Q Consensus 347 ~~~~~~~~~~~h~~~v~~~~~s-~~~~~~l~s~~~ 380 (406)
+++..+.-....+++++|- ++.+.+++|++.
T Consensus 230 ---~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 230 ---NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ---CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 4444444444568999995 666657777654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.61 E-value=7.5e-06 Score=68.93 Aligned_cols=201 Identities=12% Similarity=0.150 Sum_probs=127.9
Q ss_pred eeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCC
Q 015484 169 GYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRT 247 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~ 247 (406)
-..|++++++. ++++-..+..|++||.+. .....+...............+++.+..+..+++. +.++.|..++..
T Consensus 25 P~gvavd~dg~-i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 25 PSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp EEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred ccEEEEcCCCC-EEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 57899999887 777777788999999653 21111110000011122344566655444444433 455677777754
Q ss_pred Ccccccc-cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 248 NQTQQRV-KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 248 ~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
++....+ .........++..+++. ++++....+.+.+++... ..+..+ ..+......+++.+++. ++++....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~ 177 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRA 177 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGG
T ss_pred ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCC--ceeecccccccccccceeeecccee-EEeeeccc
Confidence 5444444 22345567899999988 677666667788887653 224443 34556788999999985 78888888
Q ss_pred CcEEEEeCCCCCcccccccccCCCCeeEEEe--cCCCCCeeeEEeCCCCCcEEEEEe-CCCcEEEEeCCCc
Q 015484 325 RRLMVWDLNRIGDEQLELDAEDGPPELLFSH--GGHKAKISDFSWNKNDPWVISSVA-DDNTVQVWQMTDS 392 (406)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~~l~s~~-~dg~i~iw~~~~~ 392 (406)
+.|.+||... ..+..+ .+.......|++.++|+ ++++-. .++.|.+|+....
T Consensus 178 ~~V~~~d~~G---------------~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 178 HCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp TEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC
T ss_pred cceeeeecCC---------------ceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCC
Confidence 9999999754 333333 23455678999999998 666644 3456999986544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.34 E-value=0.00018 Score=60.69 Aligned_cols=204 Identities=12% Similarity=0.092 Sum_probs=128.9
Q ss_pred eEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCc
Q 015484 170 YGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQ 249 (406)
Q Consensus 170 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 249 (406)
-+..|.+.+..+..+=-..+.|..||..++.. ..+ .....+.++++.+ ++.++++ +.+ .+.++|..+++
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-------~~~-~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~ 89 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK-------TVH-ALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGV 89 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------EEE-ECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-------EEE-ECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccce
Confidence 35678876553555545678899999887532 111 2345678888886 5666654 444 58899999886
Q ss_pred cccccc----ccCCCeeEEEecCCCCcEEEEEeC----CCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE
Q 015484 250 TQQRVK----AHEKEVNYLSFNPYNEWVLATASS----DTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 250 ~~~~~~----~~~~~v~~i~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
...... .....++.+.+.|+|. +.++... .+.-.+|.+..++ +..+...-...+.++|+++++.++++-
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred eeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCc--EEEEeeccCCcceeeecCCCceEEEee
Confidence 532221 1223578899999998 4444321 2344566655433 223322234568899999998777888
Q ss_pred eCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCccc
Q 015484 322 ADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIY 394 (406)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~ 394 (406)
+..+.|..|++........ ..........+.......+++..+|. +.++.-..+.|..|+......
T Consensus 167 t~~~~I~~~~~d~~~~~~~------~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~ 232 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPT------GKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHI 232 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBS------SCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEE
T ss_pred cccceeeEeeecccccccc------cceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcEe
Confidence 8889999998754221110 11223333344455678899999998 666666678899999876544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=7.1e-05 Score=67.66 Aligned_cols=265 Identities=12% Similarity=0.112 Sum_probs=132.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc-CCCCCceeeeCCCC---------CeeEEEecCCCCCeEEEe
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ-DDCDPDLRLKGHDK---------EGYGLSWSPFKEGYLVSG 185 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~l~s~ 185 (406)
+.+....|+|+|.. ||-.. ++.|++.+......... ........+.+... .-.++.|||+|+ +||..
T Consensus 114 ~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~ 190 (465)
T d1xfda1 114 AKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYA 190 (465)
T ss_dssp CCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEE
T ss_pred cccceeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEE
Confidence 44566899999965 55443 56788888765322110 00000011111111 124788999999 77665
Q ss_pred cC-CCeEEEEe---------------------------------CCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEE
Q 015484 186 SH-DNKICLWD---------------------------------VSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLF 231 (406)
Q Consensus 186 ~~-dg~i~iwd---------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 231 (406)
.. +..|..+. +..+.......+.........-+..+.|.| +++++
T Consensus 191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~ 269 (465)
T d1xfda1 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVA 269 (465)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEE
T ss_pred EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEE
Confidence 42 33333333 222211100000000111122367788988 45555
Q ss_pred EEEec-C---CcEEEEECCCCcccccccc-cCCC----eeEEEecCCCCcEEEE-Ee-CCC--cEEEEeCCC-----CCC
Q 015484 232 GSAGD-D---CQLMIWDLRTNQTQQRVKA-HEKE----VNYLSFNPYNEWVLAT-AS-SDT--TVALFDMRK-----MTV 293 (406)
Q Consensus 232 ~~~~~-d---g~i~i~d~~~~~~~~~~~~-~~~~----v~~i~~~~~~~~~l~~-~~-~dg--~i~vwd~~~-----~~~ 293 (406)
+.... + ..+.++|..+++....+.. .... -....|+|+|..+++. .+ .+| .+..+++.. ...
T Consensus 270 ~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~ 349 (465)
T d1xfda1 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND 349 (465)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred EEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCc
Confidence 44332 2 2588899988876544322 1221 2345788998854332 22 233 444444321 112
Q ss_pred CcEEecCCCCCeEEE-EEcCCCCCEEEEEeCCC--cEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 294 PLHILSSHTEEVFQV-EWDPNHETVLASSADDR--RLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 294 ~~~~~~~h~~~v~~i-~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
.+..+....-.|..+ .|++.++.+..++..++ .-.+|.+.-.+... ..++...........++.|||+
T Consensus 350 ~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~---------~~~lt~~~~~~~~~~~~~~S~~ 420 (465)
T d1xfda1 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN---------RQCLSCDLVENCTYFSASFSHS 420 (465)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC---------CBCSSTTSSSSCCCCEEEECTT
T ss_pred eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc---------ceeeccccCCCCCEEEEEECCC
Confidence 234444445567775 68888887666776543 33455544321110 1111111123345778999999
Q ss_pred CCcEEEEEeCC--CcEEEEeCCCcc
Q 015484 371 DPWVISSVADD--NTVQVWQMTDSI 393 (406)
Q Consensus 371 ~~~~l~s~~~d--g~i~iw~~~~~~ 393 (406)
+++++.+++.- -.+.+++..++.
T Consensus 421 ~~y~v~~~s~~~~P~~~~~~~~~~~ 445 (465)
T d1xfda1 421 MDFFLLKCEGPGVPMVTVHNTTDKK 445 (465)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTCC
T ss_pred CCEEEEEeecCCCCeEEEEECCCCC
Confidence 99866555432 346777766553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.17 E-value=4.5e-05 Score=63.55 Aligned_cols=236 Identities=6% Similarity=0.001 Sum_probs=115.2
Q ss_pred EEcCC--CCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEec-CCC-----eEEE
Q 015484 122 RCMPQ--KPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGS-HDN-----KICL 193 (406)
Q Consensus 122 ~~~p~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg-----~i~i 193 (406)
..+|+ |..++.+ .+|.|.+.++.... ...+..+.+.+...+|||+|+ .|+-.. .++ .|.+
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~---------~~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGS---------TRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTTCC---------EEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEE--eCCcEEEEECCCCC---------EEEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEE
Confidence 35687 8544434 35679888998732 345666777889999999999 666432 222 3666
Q ss_pred EeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec------CCcEEEEECCCCcccccccccCCCeeEEEec
Q 015484 194 WDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFN 267 (406)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~ 267 (406)
++...+.......................|+| +++.++.... ...+...+...+..... ........ +.
T Consensus 73 ~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~ 147 (281)
T d1k32a2 73 YNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHI-LF 147 (281)
T ss_dssp EETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEE-EE
T ss_pred EEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCcccee-ee
Confidence 67666543211100011111223446778999 4555544322 12244445443332211 12222223 33
Q ss_pred CCCCcEEEEEeCCC-----------cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--cEEEEeCCC
Q 015484 268 PYNEWVLATASSDT-----------TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDR--RLMVWDLNR 334 (406)
Q Consensus 268 ~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg--~i~iwd~~~ 334 (406)
+++...++...... ...+..... .. ......+........++++. ++.....++ .|.++|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g 223 (281)
T d1k32a2 148 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GA-FKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDG 223 (281)
T ss_dssp ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TE-EEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTS
T ss_pred cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cc-eeeccCCccccceeeeeccc--cceecccccccceEEEeCCC
Confidence 33332444332221 111111111 11 22222333445555666543 344444443 456666654
Q ss_pred CCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCcccCC
Q 015484 335 IGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQVWQMTDSIYRD 396 (406)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 396 (406)
... +. +..+. ......|+|+|+.++.+. ++.|+++++.++..+.
T Consensus 224 ~~~------------~~---lt~~~-~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 224 KDL------------RK---HTSFT-DYYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEK 267 (281)
T ss_dssp CSC------------EE---CCCCC-SSCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEE
T ss_pred Cce------------EE---eecCC-CcccccCcCCCCEEEEEe--CCEEEEEECCCCCEEE
Confidence 221 11 11111 122346899999755543 6789999999886543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.3e-05 Score=69.13 Aligned_cols=153 Identities=10% Similarity=0.183 Sum_probs=94.3
Q ss_pred EEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe---------cCCcEEE
Q 015484 172 LSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG---------DDCQLMI 242 (406)
Q Consensus 172 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---------~dg~i~i 242 (406)
..|.+++. ++. -..+|.|.+||+.++.....+. ... .....+....|+|+ ++.++... ..+.+.+
T Consensus 22 ~~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~~-~~~--~~~~~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 22 AKWISDTE-FIY-REQKGTVRLWNVETNTSTVLIE-GKK--IESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CCBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEEC-TTT--TTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEE
T ss_pred CEEeCCCc-EEE-EeCCCcEEEEECCCCCEEEEEc-Ccc--ccccccceeEECCC-CCeEEEEEcccceeEeeccccEEE
Confidence 46888776 554 4567899999998765421111 011 12235667789995 55544442 3577899
Q ss_pred EECCCCccccc--ccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe-cCCCCCe--------------
Q 015484 243 WDLRTNQTQQR--VKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL-SSHTEEV-------------- 305 (406)
Q Consensus 243 ~d~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v-------------- 305 (406)
+|+.++..... .......+....|+|+|. .+|-.. ++.|.+.+...... ++.. .+....|
T Consensus 96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~-~~lt~~g~~~~i~nG~~d~vyeee~~ 172 (465)
T d1xfda1 96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEIL 172 (465)
T ss_dssp EESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred EEccCCceeeccCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCce-EEEecccCcceeeccccchhhhhhhc
Confidence 99998775332 233345566789999999 455444 56788888876543 3322 2222212
Q ss_pred ---EEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 015484 306 ---FQVEWDPNHETVLASSADDRRLMVWDLN 333 (406)
Q Consensus 306 ---~~i~~~p~~~~~l~s~~~dg~i~iwd~~ 333 (406)
..+-|+|+|++++..-..+..|..+.+.
T Consensus 173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~ 203 (465)
T d1xfda1 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (465)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred cccceEEECCCCCeEEEEEecccccceeecc
Confidence 4678999999755555566667666654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.002 Score=53.06 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=136.0
Q ss_pred eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEe-cCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 139 EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSG-SHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 139 ~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
.|+..++.... ...+......+.+++|.+..+ .|.-. ...+.|...+++......... .........
T Consensus 11 ~I~~~~l~~~~---------~~~~~~~~~~~~~id~d~~~~-~lYw~D~~~~~I~~~~l~~~~~~~~~~--~~~~~~~~~ 78 (266)
T d1ijqa1 11 EVRKMTLDRSE---------YTSLIPNLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQA 78 (266)
T ss_dssp SEEEEETTSCC---------CEEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEEC--------CE--EEECSSCSC
T ss_pred eEEEEECCCCc---------ceeeeCCCCceEEEEEEeCCC-EEEEEECCCCEEEEEEecCCCCCcceE--EEEeCCCCC
Confidence 48888887632 222334455678999998776 55544 456777777765432211111 111222345
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEe-CCCcEEEEeCCCCCCCcE
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATAS-SDTTVALFDMRKMTVPLH 296 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 296 (406)
+..+++.+.++++..+-...+.|.+.++........+.........++.+|....++.+.. ..+.|.-.++..... ..
T Consensus 79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~ 157 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 157 (266)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ec
Confidence 6678887767888877778889999999866544444444566789999997774554432 234576667654332 22
Q ss_pred EecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEE
Q 015484 297 ILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVIS 376 (406)
Q Consensus 297 ~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~ 376 (406)
.....-...+.+++.+.++.+..+-...+.|...++.... ...+...........++++.. .+++.
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~------------~~~~~~~~~~~~~p~~lav~~--~~ly~ 223 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------------RKTILEDEKRLAHPFSLAVFE--DKVFW 223 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEEECTTTTSSEEEEEEET--TEEEE
T ss_pred ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC------------EEEEEeCCCcccccEEEEEEC--CEEEE
Confidence 2333345678999999887666666778889888886522 122222222233456677663 33666
Q ss_pred EEeCCCcEEEEeCCCc
Q 015484 377 SVADDNTVQVWQMTDS 392 (406)
Q Consensus 377 s~~~dg~i~iw~~~~~ 392 (406)
+-..++.|...+..++
T Consensus 224 td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 224 TDIINEAIFSANRLTG 239 (266)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEECCCC
Confidence 6666777777766554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=0.003 Score=51.80 Aligned_cols=228 Identities=9% Similarity=-0.007 Sum_probs=136.7
Q ss_pred CeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCcc
Q 015484 138 CEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESV 217 (406)
Q Consensus 138 g~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (406)
+.|+-..++..... ...+...+..+...+.+|+|...++..+.+-..++.|...+++..... .........
T Consensus 10 ~~I~~~~ld~~~~~---~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~------~v~~~~~~~ 80 (263)
T d1npea_ 10 GKIERLPLERNTMK---KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT------TIIRQDLGS 80 (263)
T ss_dssp EEEEEEEESSSCBC---GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE------EEECTTCCC
T ss_pred CeEEEEECCCcccc---ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE------EEEEecccc
Confidence 45766676543221 112223344445567889999877634444456688888888764321 112222346
Q ss_pred EEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCc--EEEEeCCCCCCCc
Q 015484 218 VEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTT--VALFDMRKMTVPL 295 (406)
Q Consensus 218 i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~ 295 (406)
+.++++...++++..+-...+.|.+.++........+.........++++|....++.+-...+. |.--++..... .
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~ 159 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-e
Confidence 78888887667777777788899999988655432233334567899999988845544333233 44445554332 3
Q ss_pred EEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEE
Q 015484 296 HILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVI 375 (406)
Q Consensus 296 ~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l 375 (406)
......-.....+++.+.++.+..+-...+.|...++..... ..+ ..+.. ...+|++. +.++.
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~------------~~v--~~~~~-~P~~lav~--~~~lY 222 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------------RKV--LEGLQ-YPFAVTSY--GKNLY 222 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------------EEE--EECCC-SEEEEEEE--TTEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe------------EEE--ECCCC-CcEEEEEE--CCEEE
Confidence 333333456789999988876556666788899888865211 112 22222 24577775 33366
Q ss_pred EEEeCCCcEEEEeCCCc
Q 015484 376 SSVADDNTVQVWQMTDS 392 (406)
Q Consensus 376 ~s~~~dg~i~iw~~~~~ 392 (406)
.+-...+.|...+..++
T Consensus 223 wtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 223 YTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp EEETTTTEEEEEETTTT
T ss_pred EEECCCCEEEEEECCCC
Confidence 66556677877777665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=0.015 Score=47.43 Aligned_cols=202 Identities=8% Similarity=0.012 Sum_probs=124.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEE
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLW 194 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw 194 (406)
...+..++|.+.+..++.+-..++.|+..++.... ....+......+.++++...+..+..+-...+.|.+.
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~ 106 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--------cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence 34588899998776666666677889888887521 1222323335677888876666344555667899999
Q ss_pred eCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC--cEEEEECCCCcccccccccCCCeeEEEecCCCCc
Q 015484 195 DVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC--QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEW 272 (406)
Q Consensus 195 d~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 272 (406)
+++..... .........+..++++|..+.++.+-...+ .|.--++............-.....+++++.++.
T Consensus 107 ~~dg~~~~------~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~ 180 (263)
T d1npea_ 107 KMDGTQRR------VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ 180 (263)
T ss_dssp ETTSCSCE------EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred ecCCceEE------EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcE
Confidence 98764321 111222356889999997666665543333 3544566543332222223345678999988774
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 273 VLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 273 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+..+-...+.|...|+..... ...+.+ .....+|++. +.++..+-...+.|...|...
T Consensus 181 lYw~d~~~~~I~~~~~~g~~~-~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 181 LCWVDAGTHRAECLNPAQPGR-RKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp EEEEETTTTEEEEEETTEEEE-EEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred EEEEeCCCCEEEEEECCCCCe-EEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 555555678899999875432 222332 2334677776 334666666778888888765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.51 E-value=0.012 Score=47.99 Aligned_cols=206 Identities=9% Similarity=0.100 Sum_probs=96.8
Q ss_pred EEEeecCCceeEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEE
Q 015484 109 AQKIRVDGEVNRARCMPQKPNLVGTKTSSC-----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLV 183 (406)
Q Consensus 109 ~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 183 (406)
.+...+.+.+...+|+|+|+.+..+...++ .|.+++......... ..................|+|+++ .|+
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l--t~~~~~~~~~~~~~~~~~~spdg~-~l~ 110 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI--TYFSGKSTGRRMFTDVAGFDPDGN-LII 110 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC--CCCCEEEETTEECSEEEEECTTCC-EEE
T ss_pred EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe--eecCCCccCccccccccccCCCCC-EEE
Confidence 334567788999999999965444443332 467777766432210 000111112223456788999998 665
Q ss_pred EecC------CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCC-----------cEEEEECC
Q 015484 184 SGSH------DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDC-----------QLMIWDLR 246 (406)
Q Consensus 184 s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-----------~i~i~d~~ 246 (406)
.... ...+...+...... . ..+......+ +.+.+...++...... ........
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (281)
T d1k32a2 111 STDAMQPFSSMTCLYRVENDGINF-------V--PLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 180 (281)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEE-------E--ECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE
T ss_pred EEEccCCCccceeeeeecCCCcee-------E--EecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeecc
Confidence 5422 12233444433211 0 1112222222 2332333333322111 11111111
Q ss_pred CCcccccccccCCCeeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 015484 247 TNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDT--TVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADD 324 (406)
Q Consensus 247 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d 324 (406)
... ...............+.++. ++.....++ .|.++|+.... ...+..+.. .....|+|+|+.++.+ .+
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~--~~~lt~~~~-~~~~~~SpDG~~I~f~--~~ 252 (281)
T d1k32a2 181 SGA-FKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKD--LRKHTSFTD-YYPRHLNTDGRRILFS--KG 252 (281)
T ss_dssp TTE-EEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCS--CEECCCCCS-SCEEEEEESSSCEEEE--ET
T ss_pred ccc-eeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCc--eEEeecCCC-cccccCcCCCCEEEEE--eC
Confidence 111 11111223333445555442 344444433 57778887644 334433322 2234689999975543 36
Q ss_pred CcEEEEeCCCC
Q 015484 325 RRLMVWDLNRI 335 (406)
Q Consensus 325 g~i~iwd~~~~ 335 (406)
+.|.++|+...
T Consensus 253 ~~l~~~d~~~g 263 (281)
T d1k32a2 253 GSIYIFNPDTE 263 (281)
T ss_dssp TEEEEECTTTC
T ss_pred CEEEEEECCCC
Confidence 78999998763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.024 Score=46.25 Aligned_cols=210 Identities=9% Similarity=0.012 Sum_probs=125.9
Q ss_pred eecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeE
Q 015484 112 IRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKI 191 (406)
Q Consensus 112 ~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 191 (406)
+.....+..+.|.+....+..+-...+.|+-.++...... ......+......+.++++...++++..+-...+.|
T Consensus 26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~----~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I 101 (266)
T d1ijqa1 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (266)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC----cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEE
Confidence 3455677899999877666666566777877776542110 111122222234566788776666455555667899
Q ss_pred EEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEE-ecCCcEEEEECCCCcccccccccCCCeeEEEecCCC
Q 015484 192 CLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSA-GDDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYN 270 (406)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~ 270 (406)
.+.+++..... ............++.+|..+.++.+- +..+.|.-.++............-...+.+++++.+
T Consensus 102 ~v~~~~g~~~~------~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~ 175 (266)
T d1ijqa1 102 SVADTKGVKRK------TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 175 (266)
T ss_dssp EEEETTSSSEE------EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT
T ss_pred EeEecCCceEE------EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccc
Confidence 99998764321 22233345678899998666666554 234567777776543332223233556889999887
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCcEEecC--CCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 271 EWVLATASSDTTVALFDMRKMTVPLHILSS--HTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 271 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+.+..+-...+.|...|+..... ...... ......++++.. .++..+-..++.|...+...
T Consensus 176 ~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 176 GRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred cEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCC
Confidence 75666656678999999875443 222222 223466777763 34666666777887777655
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.99 E-value=0.012 Score=50.76 Aligned_cols=205 Identities=11% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCC-CCCEEEEEecC------------------
Q 015484 177 FKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLK-NENLFGSAGDD------------------ 237 (406)
Q Consensus 177 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~d------------------ 237 (406)
+|+-+++.-..+++|.+-|+...+..+.+ .. .....+..+...+. ...+++..+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi----~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAIL----EI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE----EC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEE----ec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 56633444557889999999886543222 11 12334454444321 34455554442
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCC-------------------------------------
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSD------------------------------------- 280 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~d------------------------------------- 280 (406)
+.+.++|..+++....+.. ......++++++|++.++++...
T Consensus 173 ~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei 251 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 251 (459)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred eEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence 2366788888776555542 33456789999999555544221
Q ss_pred CcEEEEeCCCC--CCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecCC
Q 015484 281 TTVALFDMRKM--TVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGH 358 (406)
Q Consensus 281 g~i~vwd~~~~--~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 358 (406)
+.+.+.|.+.. ...+..+.. ......+..+|+|+++++++..+.++.|+|+++....... ...+...+......
T Consensus 252 ngV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~---~~~~~~~~~~e~el 327 (459)
T d1fwxa2 252 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE---NADPRSAVVAEPEL 327 (459)
T ss_dssp TTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS---CC-GGGGEEECCBC
T ss_pred CCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc---cCCccccEEeeccc
Confidence 22344555431 111212221 2335678999999998888889999999999864322110 01111222221122
Q ss_pred CCCeeeEEeCCCCCcEEEEEeCCCcEEEEeCCCc
Q 015484 359 KAKISDFSWNKNDPWVISSVADDNTVQVWQMTDS 392 (406)
Q Consensus 359 ~~~v~~~~~s~~~~~~l~s~~~dg~i~iw~~~~~ 392 (406)
.-.....+|+..|. ...|---|..|.-|++...
T Consensus 328 glgPLht~fd~~g~-aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 328 GLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp CSCEEEEEECTTSE-EEEEETTTTEEEEEEHHHH
T ss_pred CcCccccccCCCce-EEEEeeccceEEEEecchh
Confidence 23355668888875 5666668999999998543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.46 E-value=0.21 Score=42.44 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=65.8
Q ss_pred EcCCCCcEEEEEeCC-----C------eEEEEeCCCccccccCCCCCceee-eCCCCCeeEEEecCCCCCeEEEecCC-C
Q 015484 123 CMPQKPNLVGTKTSS-----C------EVYVFDCAKQAEKQQDDCDPDLRL-KGHDKEGYGLSWSPFKEGYLVSGSHD-N 189 (406)
Q Consensus 123 ~~p~~~~~l~~~~~d-----g------~i~iw~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~d-g 189 (406)
...++ .+++.|+.+ + .+.+||..+. .+...... ..|.....+.++.+++. +++.|+.+ .
T Consensus 27 ~~~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~------~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~ 98 (387)
T d1k3ia3 27 EPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG------IVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK 98 (387)
T ss_dssp ETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC------CBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTT
T ss_pred EeeCC-EEEEEEeecCcccCCCCCceeEEEEEECCCC------cEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCc
Confidence 34455 677776642 1 3778999874 33333333 23444455677888887 88887655 5
Q ss_pred eEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC------CcEEEEECCCCc
Q 015484 190 KICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD------CQLMIWDLRTNQ 249 (406)
Q Consensus 190 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~i~d~~~~~ 249 (406)
.+.+||..+..- ........... -...+..+ ++++++.++.+ ..+.+||+.+.+
T Consensus 99 ~~~~yd~~~~~w----~~~~~~~~~r~-~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 99 KTSLYDSSSDSW----IPGPDMQVARG-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp CEEEEEGGGTEE----EECCCCSSCCS-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceeEecCccCcc----ccccccccccc-ccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence 899999877432 11111111111 12334444 67888777642 358899988764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.33 E-value=0.12 Score=44.35 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=115.3
Q ss_pred EEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCC-CeEEEecCC-------
Q 015484 120 RARCMP---QKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKE-GYLVSGSHD------- 188 (406)
Q Consensus 120 ~i~~~p---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~d------- 188 (406)
.+++.. ||+.+++.-..++.|.+-|+...+.. .+..+ .....+..++..++.+ .+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~------kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd 161 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCD------AILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 161 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE------EEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeee------EEEec-CCCCCCceeecccCCCeEEEEccCccccccCCC
Confidence 455554 77666777778899999999884321 12222 2344566666654322 266666553
Q ss_pred -----------CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecC--------------------
Q 015484 189 -----------NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDD-------------------- 237 (406)
Q Consensus 189 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-------------------- 237 (406)
+.+.+.|..+.+...++ . -......+.++++ ++++++.+.+
T Consensus 162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV------~-V~g~ld~~~~s~d-GK~af~TsyNSE~g~~l~e~ta~e~D~i~V 233 (459)
T d1fwxa2 162 GTNMEDVANYVNVFTAVDADKWEVAWQV------L-VSGNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 233 (459)
T ss_dssp SSSTTCGG-EEEEEEEEETTTTEEEEEE------E-ESSCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred CccccchhhcceEEEEEecCCceEEEEe------e-eCCChhccccCCC-CCEEEEEeccccCCcchhhcccccceEEEE
Confidence 23566777765432221 1 1234567788885 4555444322
Q ss_pred ------------------CcEEEEECCCCc--c-cccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC---
Q 015484 238 ------------------CQLMIWDLRTNQ--T-QQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTV--- 293 (406)
Q Consensus 238 ------------------g~i~i~d~~~~~--~-~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--- 293 (406)
+.+.+.|.+... . +..+.. ......+..+|+|+++++++..+.++.|+|+++...
T Consensus 234 ~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~ 312 (459)
T d1fwxa2 234 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY 312 (459)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred echHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc
Confidence 223444544311 1 112221 223467899999997777777899999999974321
Q ss_pred ----C---cEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 294 ----P---LHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 294 ----~---~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
+ +.......-....-+|...|. ...|---|..|.-|++..
T Consensus 313 ~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 313 ENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp SCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred ccCCccccEEeecccCcCccccccCCCce-EEEEeeccceEEEEecch
Confidence 1 111111233456778998874 566667899999999864
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.32 E-value=0.24 Score=41.60 Aligned_cols=192 Identities=12% Similarity=0.143 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCcEEEEEe-----------CCCeEEEEeCCCccccccCCCCCceeeeCCC-----CCeeEEEe--cCCCC
Q 015484 118 VNRARCMPQKPNLVGTKT-----------SSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD-----KEGYGLSW--SPFKE 179 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~-----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~--~~~~~ 179 (406)
.-.|...|++..+++++. ..|.|.++|+.+...... ...+.+.. -.-..+.. .+++.
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-----~l~~~~~~~~~~~f~PhGi~l~~~~dg~ 111 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-----ELEIIGNTLDISSFNPHGISTFIDDDNT 111 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-----ECEEECSSSCGGGCCEEEEEEEECTTCC
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-----EEEecCCCCCCcceeccceeEEEcCCCc
Confidence 345666777743344331 248999999887432110 11111110 11233433 34454
Q ss_pred CeEEEe---cCCCeEEEEeCCCccCCceeeeeeeeec-cCccEEEEEeeCCCCCEEEEEe-----------------cCC
Q 015484 180 GYLVSG---SHDNKICLWDVSALAQDKVIDAMHVYEA-HESVVEDVSWHLKNENLFGSAG-----------------DDC 238 (406)
Q Consensus 180 ~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~-----------------~dg 238 (406)
.+|++. ....+|.+|++..... .+.-...... .....++|++.. ++.+++|-. .-+
T Consensus 112 ~~L~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g 188 (340)
T d1v04a_ 112 VYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS 188 (340)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred EEEEEEeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCce
Confidence 345554 2456788888765432 2222222222 224578888876 566666621 112
Q ss_pred cEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe--cCCCCCeEEEEEcCCCCC
Q 015484 239 QLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL--SSHTEEVFQVEWDPNHET 316 (406)
Q Consensus 239 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~i~~~p~~~~ 316 (406)
.+..||. ++. ......-...+.|+++|+++.++++-+..+.|++|++..... +... ..-....-.+.+.+.+..
T Consensus 189 ~v~~~~~--~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 189 FVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp EEEEECS--SCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCC
T ss_pred eEEEEcC--Cce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCCCE
Confidence 3444443 332 222223456789999999996777777788999999875432 2221 112345677888775444
Q ss_pred EEEEE
Q 015484 317 VLASS 321 (406)
Q Consensus 317 ~l~s~ 321 (406)
+.+++
T Consensus 265 lwva~ 269 (340)
T d1v04a_ 265 LWVGC 269 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.40 E-value=0.61 Score=39.00 Aligned_cols=160 Identities=10% Similarity=0.080 Sum_probs=86.5
Q ss_pred eeEEEecCCCCCeEEEec------------CCCeEEEEeCCCccCCceeeeeeeeec----cCccEEEEEe--eCCCCCE
Q 015484 169 GYGLSWSPFKEGYLVSGS------------HDNKICLWDVSALAQDKVIDAMHVYEA----HESVVEDVSW--HLKNENL 230 (406)
Q Consensus 169 v~~l~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~i~~i~~--~p~~~~~ 230 (406)
.-.|...|+|. .+++++ ..|.|.++|+.+...... .+..... ..-....+.. .+++...
T Consensus 37 ~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~--~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~ 113 (340)
T d1v04a_ 37 SEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS--ELEIIGNTLDISSFNPHGISTFIDDDNTVY 113 (340)
T ss_dssp CCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEE--ECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred cceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce--EEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence 34577777766 443332 148999999886543211 1111100 0011223332 2222334
Q ss_pred EEEEe---cCCcEEEEECCCCccc----cccc-ccCCCeeEEEecCCCCcEEEEEeC---------------CCcEEEEe
Q 015484 231 FGSAG---DDCQLMIWDLRTNQTQ----QRVK-AHEKEVNYLSFNPYNEWVLATASS---------------DTTVALFD 287 (406)
Q Consensus 231 l~~~~---~dg~i~i~d~~~~~~~----~~~~-~~~~~v~~i~~~~~~~~~l~~~~~---------------dg~i~vwd 287 (406)
|++.. ...+|-+|++...... .++. ......+.+++..++. +++|-.. -+.-.+|.
T Consensus 114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 44443 4556888887544321 1221 1234568888888887 6666211 12233343
Q ss_pred CCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 015484 288 MRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSADDRRLMVWDLNR 334 (406)
Q Consensus 288 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~ 334 (406)
..... .......-...+.|+++|+++.++++-+..+.|++|++..
T Consensus 193 ~~~~~--~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 193 YSPND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp ECSSC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EcCCc--eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 33322 2222223356899999999998888888899999999875
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.17 E-value=0.62 Score=37.75 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=115.5
Q ss_pred EeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCC----CCeeEEEecCCCCCeEEEe-
Q 015484 111 KIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHD----KEGYGLSWSPFKEGYLVSG- 185 (406)
Q Consensus 111 ~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~- 185 (406)
......+|.-=+|-.+. .|+..+. ..|+-|+++. ...|...+..|. ..|..-..+++.+-++++|
T Consensus 98 s~~~~e~VvfWkWis~~--~L~lVT~-taVYHW~~~g-------~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI 167 (327)
T d1utca2 98 AHTMTDDVTFWKWISLN--TVALVTD-NAVYHWSMEG-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 167 (327)
T ss_dssp EEECSSCCCEEEESSSS--EEEEECS-SEEEEEESSS-------SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred eEEcCCCcEEEEecCCC--EEEEEcC-CceEEEcccC-------CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence 33445666666676554 4555543 4599999865 235666666664 4566667777777344443
Q ss_pred -----cCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC--CCCCEEEEE---ecCCcEEEEECCCCcc-cccc
Q 015484 186 -----SHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL--KNENLFGSA---GDDCQLMIWDLRTNQT-QQRV 254 (406)
Q Consensus 186 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~ 254 (406)
.-.|.+.+|..+.... +.+.+|.+....+...- ....+|+-+ ...+.+++.++..... -..+
T Consensus 168 ~~~~~~i~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f 240 (327)
T d1utca2 168 SAQQNRVVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 240 (327)
T ss_dssp EEETTEEEEEEEEEETTTTEE-------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred ecCCCceeEEEEEEEeccCcC-------ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence 1246788999887432 44556655555444321 112233333 2336799999876321 1111
Q ss_pred -----------cccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 015484 255 -----------KAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASSAD 323 (406)
Q Consensus 255 -----------~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~~~ 323 (406)
....+---++..++... ++..-+.-|.|++||+.++.. +..-.-....|...+-...... +++...
T Consensus 241 ~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~-i~~nRIs~~~iF~~a~~~~~~G-i~~VNr 317 (327)
T d1utca2 241 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAG-IIGVNR 317 (327)
T ss_dssp CCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTE-EEEEET
T ss_pred cceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccE-EEEeecCCCceEEeccCCCCce-EEEECC
Confidence 11234445778888777 888889999999999999775 5544444555554444444333 444455
Q ss_pred CCcEE
Q 015484 324 DRRLM 328 (406)
Q Consensus 324 dg~i~ 328 (406)
+|.|.
T Consensus 318 ~GqVl 322 (327)
T d1utca2 318 KGQVL 322 (327)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 66554
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.76 E-value=0.11 Score=44.51 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCCCEEEEEecCC-----------cEEEEECCCCcccccc---cccCCCeeEEEecCCCCcEEEEEeCC-CcEEEEeCC
Q 015484 225 LKNENLFGSAGDDC-----------QLMIWDLRTNQTQQRV---KAHEKEVNYLSFNPYNEWVLATASSD-TTVALFDMR 289 (406)
Q Consensus 225 p~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~~~~~d-g~i~vwd~~ 289 (406)
+.++++++.|+.+. .+.+||+.+++..... ..+.......++.+++. +++.|+.+ ..+.+||..
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~ 106 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSS 106 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGG
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCc
Confidence 33567777666321 2678999887653321 22223344567888888 77777655 489999987
Q ss_pred CCCCC-cEEecCCCCCeEEEEEcCCCCCEEEEEeCC------CcEEEEeCCC
Q 015484 290 KMTVP-LHILSSHTEEVFQVEWDPNHETVLASSADD------RRLMVWDLNR 334 (406)
Q Consensus 290 ~~~~~-~~~~~~h~~~v~~i~~~p~~~~~l~s~~~d------g~i~iwd~~~ 334 (406)
+..-. ...+.. ...-..++..++++ +++.++.+ ..+.+||..+
T Consensus 107 ~~~w~~~~~~~~-~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 107 SDSWIPGPDMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp GTEEEECCCCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCcccccccccc-cccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence 64310 111111 12234566777886 66676643 3588999876
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.39 E-value=1 Score=36.50 Aligned_cols=229 Identities=10% Similarity=0.170 Sum_probs=131.1
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCc
Q 015484 120 RARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSAL 199 (406)
Q Consensus 120 ~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~ 199 (406)
+.-.+|.. .+||.-+ ..++.|||++.... +.... ...+|.--.|-.+. .|+-.. +..|.-|+++..
T Consensus 67 sAIMhP~~-~IiALra-g~~LQiFnletK~k--------lks~~-~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~ 132 (327)
T d1utca2 67 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSK--------MKAHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGE 132 (327)
T ss_dssp EEEECSSS-SEEEEEE-TTEEEEEETTTTEE--------EEEEE-CSSCCCEEEESSSS--EEEEEC-SSEEEEEESSSS
T ss_pred hhhcCCCC-cEEEEec-CCeEEEEehhHhhh--------hceEE-cCCCcEEEEecCCC--EEEEEc-CCceEEEcccCC
Confidence 44557877 5777665 56899999998322 22222 23567677787544 455553 467999999653
Q ss_pred cCCceeeeeeeeeccC----ccEEEEEeeCCCCCEEEEEe-------cCCcEEEEECCCCcccccccccCCCeeEEEecC
Q 015484 200 AQDKVIDAMHVYEAHE----SVVEDVSWHLKNENLFGSAG-------DDCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNP 268 (406)
Q Consensus 200 ~~~~~~~~~~~~~~~~----~~i~~i~~~p~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~ 268 (406)
.. +...+..|. ..|-.-..++ +.+.++..+ -.|.+.+|..+.+. -+.+.+|...-..+...-
T Consensus 133 s~-----P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g 205 (327)
T d1utca2 133 SQ-----PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEG 205 (327)
T ss_dssp CC-----CEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTT
T ss_pred CC-----chhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCC
Confidence 22 233444433 4565566666 344443322 23678899876543 345555554444443321
Q ss_pred C--CCcEEEEEe---CCCcEEEEeCCCCC---CCc--E---Eec---CCCCCeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 015484 269 Y--NEWVLATAS---SDTTVALFDMRKMT---VPL--H---ILS---SHTEEVFQVEWDPNHETVLASSADDRRLMVWDL 332 (406)
Q Consensus 269 ~--~~~~l~~~~---~dg~i~vwd~~~~~---~~~--~---~~~---~h~~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~ 332 (406)
. ...+++.+. ..+.+++.++.... .+. + .+. ....-..++..++... ++..-+.-|.|.+||+
T Consensus 206 ~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDl 284 (327)
T d1utca2 206 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDL 284 (327)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEET
T ss_pred CCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEc
Confidence 1 111333332 23589999987632 111 1 111 1234467788888775 7888999999999999
Q ss_pred CCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeCCCcEE
Q 015484 333 NRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVADDNTVQ 385 (406)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~dg~i~ 385 (406)
.+ ..+++..+-....|...+-+..... +++...+|.|.
T Consensus 285 eT--------------gt~i~~nRIs~~~iF~~a~~~~~~G-i~~VNr~GqVl 322 (327)
T d1utca2 285 ET--------------GTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVL 322 (327)
T ss_dssp TT--------------CCEEEEEECCSSCEEEEEEETTTTE-EEEEETTSEEE
T ss_pred cc--------------ccEEEEeecCCCceEEeccCCCCce-EEEECCCCeEE
Confidence 98 4566665555566664444444332 44455666553
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=1.1 Score=37.81 Aligned_cols=185 Identities=12% Similarity=-0.004 Sum_probs=99.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---CCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEE
Q 015484 116 GEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQ---DDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKIC 192 (406)
Q Consensus 116 ~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 192 (406)
...+-++.++.. .+++.|+.++ +.|.....-..... .......... -..|..++|+. . .|+.. .++.+.
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~--d-~l~v~-~~~~l~ 108 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG--D-QVLVS-TRNALY 108 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET--T-EEEEE-ESSEEE
T ss_pred cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC--C-EEEEE-eCCCEE
Confidence 346677888766 4677777775 67776543211100 0111111111 23588899974 3 44444 456788
Q ss_pred EEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-----cccCCCeeEEEec
Q 015484 193 LWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV-----KAHEKEVNYLSFN 267 (406)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~i~~~ 267 (406)
.++....... .....-..++..+.++| ..++....+|.+.++++..++..... ..-...+.+++|+
T Consensus 109 ~~~~~~l~~~------~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws 179 (381)
T d1xipa_ 109 SLDLEELSEF------RTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLK 179 (381)
T ss_dssp EEESSSTTCE------EEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEET
T ss_pred EEEeeccccc------cccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEe
Confidence 8887764321 12222345678888876 45666778899999999887643221 1123567788888
Q ss_pred CCCCcEEEEEeCCCcEEEE-eCCCCCCCcEEecCCCCCeEEEEEcCCCCCEEEEE
Q 015484 268 PYNEWVLATASSDTTVALF-DMRKMTVPLHILSSHTEEVFQVEWDPNHETVLASS 321 (406)
Q Consensus 268 ~~~~~~l~~~~~dg~i~vw-d~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~l~s~ 321 (406)
+.+. .++++..++ ..+- ++..... +.........|.+|.|-.+.. ++++-
T Consensus 180 ~kgk-q~v~~~g~~-~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~~-F~vvy 230 (381)
T d1xipa_ 180 DRSF-QSFAWRNGE-MEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQD-FLAVF 230 (381)
T ss_dssp TSCE-EEEEEETTE-EEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSE-EEEEE
T ss_pred CCcE-EEEEeCCCc-eeeccCCCCccc-cCCCcCCCcceeEEEEecCce-EEEEE
Confidence 7776 556554322 2211 2211110 111112334688999987664 34433
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.05 E-value=1.6 Score=37.57 Aligned_cols=248 Identities=12% Similarity=0.075 Sum_probs=120.1
Q ss_pred eeEEEEcCCCCcEEEEEeCCC----eEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecC------
Q 015484 118 VNRARCMPQKPNLVGTKTSSC----EVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSH------ 187 (406)
Q Consensus 118 v~~i~~~p~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------ 187 (406)
+...+++|++..++.+-+..| .++++|+.++.... ..+.. .....++|.+++..++.+.-.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-------~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-------DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-------EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-------ccccc--ccccceEEcCCCCEEEEEEeccccCcc
Confidence 344567899965554554454 69999999853211 11211 122468999998844444311
Q ss_pred ---------CCeEEEEeCCCccCCceeeeeeeeecc--CccEEEEEeeCCCCCEEE-EEe--cCCc--EEEEECCCCccc
Q 015484 188 ---------DNKICLWDVSALAQDKVIDAMHVYEAH--ESVVEDVSWHLKNENLFG-SAG--DDCQ--LMIWDLRTNQTQ 251 (406)
Q Consensus 188 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~p~~~~~l~-~~~--~dg~--i~i~d~~~~~~~ 251 (406)
...|..+.+.+...... ..+... ...+..+..++ ++++++ ... .+.. +.+.|+......
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~----~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~ 272 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDI----LCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCE----EEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred cccccccCCcceEEEEECCCCccccc----cccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence 22577777776543211 222222 23455666676 455543 332 2333 444455432211
Q ss_pred --------ccccccCCCeeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCC-cEEec-CCCCCeEEEEEcCCCCCEE
Q 015484 252 --------QRVKAHEKEVNYLSFNPYNEWVLATASS---DTTVALFDMRKMTVP-LHILS-SHTEEVFQVEWDPNHETVL 318 (406)
Q Consensus 252 --------~~~~~~~~~v~~i~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~-~~~~~-~h~~~v~~i~~~p~~~~~l 318 (406)
..+........-+. +. +..+++.... ++.|...++...... ...+- .+...+..-.+...+.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv 350 (430)
T d1qfma1 273 ITGILKWVKLIDNFEGEYDYVT-NE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (430)
T ss_dssp SCSSCCCEEEECSSSSCEEEEE-EE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred cccccceeEeecccccceEEEe-cC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence 11111122222222 22 3324443332 356777777654321 23333 3444454444444444455
Q ss_pred EEEeCCCc--EEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCCCCcEEEEEeC---CCcEEEEeCCCcc
Q 015484 319 ASSADDRR--LMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKNDPWVISSVAD---DNTVQVWQMTDSI 393 (406)
Q Consensus 319 ~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~s~~~---dg~i~iw~~~~~~ 393 (406)
+....++. |+++++..... ........+.|..+...+....+.++.+. =.++.-+|+.++.
T Consensus 351 l~~~~~~~~~l~v~~~~~~~~--------------~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 351 LCYLHDVKNTLQLHDLATGAL--------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEETTEEEEEEEETTTCCE--------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEcCCEeEEEEEECCCCcE--------------EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 55556654 77888765221 11111223345555555555534444331 2568888888876
Q ss_pred cC
Q 015484 394 YR 395 (406)
Q Consensus 394 ~~ 395 (406)
++
T Consensus 417 ~~ 418 (430)
T d1qfma1 417 LE 418 (430)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=1.7 Score=34.66 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=17.6
Q ss_pred CCCcEEEEEeCCC-----cEEEEeCCCcccCC
Q 015484 370 NDPWVISSVADDN-----TVQVWQMTDSIYRD 396 (406)
Q Consensus 370 ~~~~~l~s~~~dg-----~i~iw~~~~~~~~~ 396 (406)
+++ +++.||.++ .|.+||+.++.+..
T Consensus 242 ~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 272 (288)
T d1zgka1 242 QGR-IYVLGGYDGHTFLDSVECYDPDTDTWSE 272 (288)
T ss_dssp TTE-EEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CCE-EEEEecCCCCeecceEEEEECCCCEEEE
Confidence 455 677776544 37889999876644
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.96 E-value=2.1 Score=35.61 Aligned_cols=202 Identities=10% Similarity=0.221 Sum_probs=111.5
Q ss_pred EEEecCC--CCCeEEEecCCCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeC----CC-CCEEEEEec--C--Cc
Q 015484 171 GLSWSPF--KEGYLVSGSHDNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHL----KN-ENLFGSAGD--D--CQ 239 (406)
Q Consensus 171 ~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p----~~-~~~l~~~~~--d--g~ 239 (406)
+|-++|. ...+++.....+-|.+||++. +. + ..+ ..+.++.|..-. .+ ..-+++++. + ..
T Consensus 30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G-~~---l---~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~ 100 (353)
T d1h6la_ 30 AIWLDPKNPQNSKLITTNKKSGLAVYSLEG-KM---L---HSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT 100 (353)
T ss_dssp EEECCSSCGGGCEEEEEETTSCCEEEETTC-CE---E---EEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE
T ss_pred eEEcCCCCcCccEEEEEcCcCCEEEEcCCC-cE---E---Eec--ccCCcCccccccccccCCcceEEEEEeCCcCccee
Confidence 4444553 222677777777799999963 22 1 111 234555554331 11 222344442 2 25
Q ss_pred EEEEECCCCc-cccccc-------ccCCCeeEEEe--cCC-CCcEEEEEeCCCcEEEEeCCCCC------CCcEEecCCC
Q 015484 240 LMIWDLRTNQ-TQQRVK-------AHEKEVNYLSF--NPY-NEWVLATASSDTTVALFDMRKMT------VPLHILSSHT 302 (406)
Q Consensus 240 i~i~d~~~~~-~~~~~~-------~~~~~v~~i~~--~~~-~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~h~ 302 (406)
|.+|.+.... .+..+. .....+..+++ ++. +..++++...+|.+..|.+.... ..++.+.. .
T Consensus 101 l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~ 179 (353)
T d1h6la_ 101 IEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-N 179 (353)
T ss_dssp EEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-S
T ss_pred EEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-C
Confidence 7778775322 122221 11234666766 664 44456777778999888774322 12333433 4
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCCcccccccccCCCCeeEEEecC--CCCCeeeEEeCC--CCC-cEEEE
Q 015484 303 EEVFQVEWDPNHETVLASSADDRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGG--HKAKISDFSWNK--NDP-WVISS 377 (406)
Q Consensus 303 ~~v~~i~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~--~~~-~~l~s 377 (406)
..+-.|.+.+.... |..+-++..|..++...... ....++....+ ....+-.|+.-. ++. |+|+|
T Consensus 180 ~q~EGCVvDde~~~-LyisEE~~Giw~~~a~~~~~---------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS 249 (353)
T d1h6la_ 180 SQTEGMAADDEYGS-LYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS 249 (353)
T ss_dssp SCEEEEEEETTTTE-EEEEETTTEEEEEESSTTSC---------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE
T ss_pred CccceEEEeCCCCc-EEEecCccceEEEEeccCCC---------ccceeeecccCccccCCccccEEEEcCCCCeEEEEE
Confidence 57889999998874 77777776665555543111 11233333222 345677776543 333 78888
Q ss_pred EeCCCcEEEEeCCCc
Q 015484 378 VADDNTVQVWQMTDS 392 (406)
Q Consensus 378 ~~~dg~i~iw~~~~~ 392 (406)
.-.+++..||+....
T Consensus 250 sQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 250 SQGNSSYAIYERQGQ 264 (353)
T ss_dssp EGGGTEEEEEESSTT
T ss_pred cCCCCeEEEEecCCC
Confidence 888999999998653
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=92.43 E-value=1.7 Score=37.16 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=83.6
Q ss_pred CCCCeeEEEecCCCCCeEEEecCCCeEEEEeCCCccCCceeeeeee----eeccCccEEEEEeeCCCCCEEEEEecC---
Q 015484 165 HDKEGYGLSWSPFKEGYLVSGSHDNKICLWDVSALAQDKVIDAMHV----YEAHESVVEDVSWHLKNENLFGSAGDD--- 237 (406)
Q Consensus 165 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~p~~~~~l~~~~~d--- 237 (406)
-.+.|.+|+++|..++++.++...|-| |.-..+. .....+.. .......+.+|+++|.+++.+..+..+
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG--~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~ 85 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 85 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCE--EEEETTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCE--EEEECCC--CceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence 457799999999988788888776655 3322222 22222111 111234688999999777777665422
Q ss_pred -CcEEEE-ECCCCccccccc---------ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEe------cC
Q 015484 238 -CQLMIW-DLRTNQTQQRVK---------AHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHIL------SS 300 (406)
Q Consensus 238 -g~i~i~-d~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~ 300 (406)
....+| ....++.-..+. ........+.++|.+...+.+++.++.|. .-......-... ..
T Consensus 86 ~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~--~S~D~G~tW~~~~~~~~~~~ 163 (427)
T d2ebsa1 86 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW--KSSDRAKTWTNVTSIPDAFT 163 (427)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEE--EESSTTSSCEECTTSSCCCC
T ss_pred CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccccccee--eecCCCceeeecccCccccc
Confidence 112333 333333322111 11234567889998776777776665543 222221111111 11
Q ss_pred CCCCeEEEEEcCCCCCEEE-EEeCCCcE
Q 015484 301 HTEEVFQVEWDPNHETVLA-SSADDRRL 327 (406)
Q Consensus 301 h~~~v~~i~~~p~~~~~l~-s~~~dg~i 327 (406)
....+..+.++|..+..|. ++...+.|
T Consensus 164 ~~~~~~~i~~~p~~~~~~y~~~~~~~gi 191 (427)
T d2ebsa1 164 NGIGYTSVIFDPERNGTIYASATAPQGM 191 (427)
T ss_dssp SSSCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred CCccceEEEecccccceeeeeeeecccc
Confidence 2335888999997655444 34333444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.02 E-value=1.8 Score=38.92 Aligned_cols=82 Identities=11% Similarity=-0.022 Sum_probs=49.5
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecC-CCCCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSS-HTEEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~i~~~p~~~~ 316 (406)
|.|.-+|+++++.+-+..... +..+-...-.+. ++++|+.||.++.+|.++++. +-.+.. ....-.-+.|..+|+.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~-lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred ccEEEeccCCCceeeEcCCCC-CCCcceeEecCC-EEEEECCCCeEEEEECCCCcE-EEEEECCCCceecceEEEECCEE
Confidence 578889999988765543211 111111111244 788899999999999999876 444432 1222223556667876
Q ss_pred EEEEEe
Q 015484 317 VLASSA 322 (406)
Q Consensus 317 ~l~s~~ 322 (406)
++++..
T Consensus 521 Yi~v~~ 526 (571)
T d2ad6a1 521 YIGSMY 526 (571)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 665544
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=91.37 E-value=1.8 Score=37.12 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=85.0
Q ss_pred cCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCce----eeeCCCCCeeEEEecCCCCCeEEEecCC-
Q 015484 114 VDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDL----RLKGHDKEGYGLSWSPFKEGYLVSGSHD- 188 (406)
Q Consensus 114 h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~~~d- 188 (406)
-.+.|.+|+++|.+++++.+++..|-|. .-.+... .+.++. ....+...+.+|+++|.+.+.|..+..+
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~--~S~dgG~----tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~ 83 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAY--RWDAGTS----KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY 83 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEE--EEETTTT----EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEE--EEECCCC----ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc
Confidence 4578999999999888888888765553 3322211 111111 0111234688999999876566554321
Q ss_pred ---CeEEEEeCCCccCCceeeeeeeee------ccCccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccccc-----
Q 015484 189 ---NKICLWDVSALAQDKVIDAMHVYE------AHESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQRV----- 254 (406)
Q Consensus 189 ---g~i~iwd~~~~~~~~~~~~~~~~~------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----- 254 (406)
....+|.-..+.. ....+.... .....+..+.++|.+...+.+++.++.|.. ....++.-..+
T Consensus 84 ~~~~~~gi~~S~DgG~--TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~ 160 (427)
T d2ebsa1 84 VGDEWAAFYVSEDRGQ--SFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPD 160 (427)
T ss_dssp TTSSCCEEEEESSTTS--EEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSC
T ss_pred cCCcCccEEEeCCCCc--cceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcc
Confidence 1133554333221 121111000 011335568899987887777776665532 44444432222
Q ss_pred -cccCCCeeEEEecCCCCcEEEE-EeCCCcEE
Q 015484 255 -KAHEKEVNYLSFNPYNEWVLAT-ASSDTTVA 284 (406)
Q Consensus 255 -~~~~~~v~~i~~~~~~~~~l~~-~~~dg~i~ 284 (406)
......+..+.++|.....+.. +...+.|.
T Consensus 161 ~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy 192 (427)
T d2ebsa1 161 AFTNGIGYTSVIFDPERNGTIYASATAPQGMY 192 (427)
T ss_dssp CCCSSSCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred cccCCccceEEEecccccceeeeeeeecccce
Confidence 1123447789999876544443 33333443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.24 E-value=1.2 Score=40.04 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=48.1
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~~ 316 (406)
|.|.-+|+.+++.+-.... ..+..+-...-.+. ++++|+.||.++.+|.++++. +-.+.... ..-.-+.+..+|++
T Consensus 438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~-LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEA-LWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEeCCCCeEeeeccC-CCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcE-eEEEECCCCccccCEEEEECCEE
Confidence 4577778888776655431 11111111222345 788899999999999999886 54443221 11112455556765
Q ss_pred EEEEEeCC
Q 015484 317 VLASSADD 324 (406)
Q Consensus 317 ~l~s~~~d 324 (406)
+|+..+..
T Consensus 515 yv~v~aG~ 522 (560)
T d1kv9a2 515 YVAIMAGW 522 (560)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 56554433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.78 E-value=2.1 Score=38.45 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=48.3
Q ss_pred CcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCCC-CeEEEEEcCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHTE-EVFQVEWDPNHET 316 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~i~~~p~~~~ 316 (406)
|.|.-||+.+++.+-+..... +...-...-.+. ++++|+.||.++.+|.++++. +-.+..... .-.-+.|.-+|++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCC-EEEEECCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCEE
Confidence 568888888888766553221 111111222355 788899999999999999886 544433211 1111445556765
Q ss_pred EEEEEe
Q 015484 317 VLASSA 322 (406)
Q Consensus 317 ~l~s~~ 322 (406)
+++..+
T Consensus 534 Yv~v~~ 539 (573)
T d1kb0a2 534 YVSVAV 539 (573)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.38 E-value=4.7 Score=34.40 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=100.5
Q ss_pred eeEEEecCCCCCeEE-EecCC----CeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEec-------
Q 015484 169 GYGLSWSPFKEGYLV-SGSHD----NKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGD------- 236 (406)
Q Consensus 169 v~~l~~~~~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------- 236 (406)
+.+++++|+++ +++ +-+.. ..|+++|+.+++... ..+. ......++|.+++..++.+.-.
T Consensus 127 ~~~~~~Spd~~-~la~s~d~~G~e~~~l~v~Dl~tg~~~~-----~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 127 LRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELP-----DVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEE-----EEEE--EECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred ecceEecCCCC-EEEEEeccccCchheeEEeccCcceecc-----cccc--cccccceEEcCCCCEEEEEEeccccCccc
Confidence 44667899988 554 43333 369999999875321 1111 1122567899855555554321
Q ss_pred --------CCcEEEEECCCCcccc--ccccc--CCCeeEEEecCCCCcEEEEEeC--CCc--EEEEeCCCCCCC------
Q 015484 237 --------DCQLMIWDLRTNQTQQ--RVKAH--EKEVNYLSFNPYNEWVLATASS--DTT--VALFDMRKMTVP------ 294 (406)
Q Consensus 237 --------dg~i~i~d~~~~~~~~--~~~~~--~~~v~~i~~~~~~~~~l~~~~~--dg~--i~vwd~~~~~~~------ 294 (406)
...|..+.+.+..... .+... ...+..+..+++++++++.... ++. +.+.|+......
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 278 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence 2257788877654422 22222 2345667788999855554432 233 445565432221
Q ss_pred -cEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCcEEEEeCCCCCcccccccccCCCCeeEEEecCCCCCeeeEEeCCC
Q 015484 295 -LHILSSHTEEVFQVEWDPNHETVLASSAD---DRRLMVWDLNRIGDEQLELDAEDGPPELLFSHGGHKAKISDFSWNKN 370 (406)
Q Consensus 295 -~~~~~~h~~~v~~i~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 370 (406)
............-+.. . +..+++.... ++.|...++....... .+. ....+...+..-.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~---------w~~--vi~~~~~~~~~~~~~~~ 345 (430)
T d1qfma1 279 WVKLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESK---------WKV--LVPEHEKDVLEWVACVR 345 (430)
T ss_dssp CEEEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGG---------CEE--EECCCSSCEEEEEEEET
T ss_pred eeEeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCcccc---------ceE--EecccCcceeeeEEEEE
Confidence 1222222223332222 2 2233443332 3566666665422110 111 12223333433333333
Q ss_pred CCcEEEEEeCCCc--EEEEeCCCccc
Q 015484 371 DPWVISSVADDNT--VQVWQMTDSIY 394 (406)
Q Consensus 371 ~~~~l~s~~~dg~--i~iw~~~~~~~ 394 (406)
+.+++++.-.++. |+++++.++..
T Consensus 346 ~~~lvl~~~~~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 346 SNFLVLCYLHDVKNTLQLHDLATGAL 371 (430)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEEEcCCEeEEEEEECCCCcE
Confidence 3345556555644 77888877654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.30 E-value=2.3 Score=38.33 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=50.9
Q ss_pred CCcEEEEECCCCcccccccccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCCcEEecCCC-CCeEEEEEcCCCC
Q 015484 237 DCQLMIWDLRTNQTQQRVKAHEKEVNYLSFNPYNEWVLATASSDTTVALFDMRKMTVPLHILSSHT-EEVFQVEWDPNHE 315 (406)
Q Consensus 237 dg~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~i~~~p~~~ 315 (406)
.|.|.-+|+.+++.+-..... .++.+-..+..+. ++++|+.||.++-+|.++++. +-.+.... ..-.-+.|..+|+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCE
Confidence 467888999998876665422 2222111223455 788899999999999999886 54444222 1112256667786
Q ss_pred CEEEEE
Q 015484 316 TVLASS 321 (406)
Q Consensus 316 ~~l~s~ 321 (406)
++++..
T Consensus 542 qYv~i~ 547 (582)
T d1flga_ 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.21 E-value=4.3 Score=33.65 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCeeEEEe--cCC-CCCeEEEecCCCeEEEEeCCCccCC-ceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE
Q 015484 167 KEGYGLSW--SPF-KEGYLVSGSHDNKICLWDVSALAQD-KVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI 242 (406)
Q Consensus 167 ~~v~~l~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i 242 (406)
..++++++ ++. +.-+++....+|.+..|.+...... .....++.+. ....+..+++.+ ....|..+-.+..|..
T Consensus 128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDd-e~~~LyisEE~~Giw~ 205 (353)
T d1h6la_ 128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADD-EYGSLYIAEEDEAIWK 205 (353)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeC-CCCcEEEecCccceEE
Confidence 34777777 554 3325677778999999987543322 2233334443 356788999997 4555556677766666
Q ss_pred EECCCC--cccc---ccc--ccCCCeeEEEec--CCCC-cEEEEEeCCCcEEEEeCCCCCCCcEEe
Q 015484 243 WDLRTN--QTQQ---RVK--AHEKEVNYLSFN--PYNE-WVLATASSDTTVALFDMRKMTVPLHIL 298 (406)
Q Consensus 243 ~d~~~~--~~~~---~~~--~~~~~v~~i~~~--~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~ 298 (406)
++.... .... ... .....+-.|+.- .++. ++|++.-.+++..+||.......+..+
T Consensus 206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 665422 1111 111 134566667643 2333 455555567899999988754444444
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.39 E-value=5.9 Score=34.09 Aligned_cols=54 Identities=7% Similarity=0.189 Sum_probs=37.7
Q ss_pred CccEEEEEeeCCCCCEEEEEecCCcEEEEECCCCcccc--cc------cccCCCeeEEEecCC
Q 015484 215 ESVVEDVSWHLKNENLFGSAGDDCQLMIWDLRTNQTQQ--RV------KAHEKEVNYLSFNPY 269 (406)
Q Consensus 215 ~~~i~~i~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~------~~~~~~v~~i~~~~~ 269 (406)
-...++|+|.| ++++|++--..|.|++++..++.... .+ ...+.....|+++|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 34677999999 67888766557999999887765321 11 122456788999985
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.22 E-value=5.4 Score=33.41 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=75.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCCCCCeEEEecCCCeEEEEeC
Q 015484 117 EVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPFKEGYLVSGSHDNKICLWDV 196 (406)
Q Consensus 117 ~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~ 196 (406)
.|..++|+.+ .|+.. .++.+..++.... ........-..++..+.++|. .++....+|.+.++++
T Consensus 88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l--------~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l 152 (381)
T d1xipa_ 88 DVIFVCFHGD---QVLVS-TRNALYSLDLEEL--------SEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDL 152 (381)
T ss_dssp TEEEEEEETT---EEEEE-ESSEEEEEESSST--------TCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEET
T ss_pred CeEEEEeeCC---EEEEE-eCCCEEEEEeecc--------ccccccccccccccceecCCc---eeEEEecCCCEEEEEe
Confidence 5888999754 34444 4556888887762 112233334567888888873 4555666899999999
Q ss_pred CCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEecCCcEEE-EECCCCcccccccccCCCeeEEEecCCCC
Q 015484 197 SALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAGDDCQLMI-WDLRTNQTQQRVKAHEKEVNYLSFNPYNE 271 (406)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~v~~i~~~~~~~ 271 (406)
..++..........+. -.+.+.+++|++ ++..++++..+ ...+ -++.....+.........|.+|.|-.+..
T Consensus 153 ~~~~~~~~~~~v~~~~-~~~~~~~v~ws~-kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~ 225 (381)
T d1xipa_ 153 RTKSTKQLAQNVTSFD-VTNSQLAVLLKD-RSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 225 (381)
T ss_dssp TTCCEEEEEESEEEEE-ECSSEEEEEETT-SCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred ccCccccccCCcceEE-ecCCceEEEEeC-CcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCce
Confidence 8864322211111111 235577888886 55666555322 2221 12221111111112345678899986655
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=89.01 E-value=1.9 Score=38.66 Aligned_cols=55 Identities=11% Similarity=0.043 Sum_probs=36.6
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccccccCC-CeeEEEecCCCCcEEEEEeCCC
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVNYLSFNPYNEWVLATASSDT 281 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~~dg 281 (406)
.+.++++|+.||.++.+|.++++.+-++..... .-.-+.+..+|+.++++.+..|
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g 523 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG 523 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence 356777899999999999999999877743221 1112445556776766655433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.65 E-value=6.9 Score=34.88 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=19.2
Q ss_pred CEEEEEecCCcEEEEECCCCcccc
Q 015484 229 NLFGSAGDDCQLMIWDLRTNQTQQ 252 (406)
Q Consensus 229 ~~l~~~~~dg~i~i~d~~~~~~~~ 252 (406)
..++.++.+|.+.++|..+++.+.
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~ 351 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFIS 351 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEE
T ss_pred eeeeeccccceeEEeccccccccc
Confidence 456777889999999999887653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.27 E-value=9.3 Score=32.79 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=43.3
Q ss_pred CeEEEEEeecCCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeCCCCCeeEEEecCC
Q 015484 105 KVEIAQKIRVDGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKGHDKEGYGLSWSPF 177 (406)
Q Consensus 105 ~~~~~~~~~h~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 177 (406)
.+++......-...++|+|.|++ .++++--..|.|++++..+.................-......|+++|+
T Consensus 16 ~f~~~~ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 16 NFDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp TSCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CcEEEEEECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35555445445688899999999 5676654579999998776433221111111111122345678999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.93 E-value=2.9 Score=37.60 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCEEEEEecCCcEEEEECCCCcccccccccCC-CeeEEEecCCCCcEEEEEe
Q 015484 227 NENLFGSAGDDCQLMIWDLRTNQTQQRVKAHEK-EVNYLSFNPYNEWVLATAS 278 (406)
Q Consensus 227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~~~~ 278 (406)
.+.++++|+.||.++.+|.++|+.+-++..... .-.-+.+..+|+.++++..
T Consensus 496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~a 548 (582)
T d1flga_ 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 456777899999999999999999877743221 1112556667876666543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.37 E-value=17 Score=32.11 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=32.8
Q ss_pred CcEEEEECCCCcccccccccCCCe-----------eEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 015484 238 CQLMIWDLRTNQTQQRVKAHEKEV-----------NYLSFNPYNEWVLATASSDTTVALFDMRKMT 292 (406)
Q Consensus 238 g~i~i~d~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 292 (406)
..+...|+++++.+-.++.....+ ..+.........++.++.+|.+.++|..+++
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 457778889888765543221111 1222222122256778889999999988765
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.11 E-value=10 Score=28.70 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=82.2
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccCCCCCceeeeC-------CCCCeeEEEecCCCCCeEEEecC
Q 015484 115 DGEVNRARCMPQKPNLVGTKTSSCEVYVFDCAKQAEKQQDDCDPDLRLKG-------HDKEGYGLSWSPFKEGYLVSGSH 187 (406)
Q Consensus 115 ~~~v~~i~~~p~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~ 187 (406)
..+++-+...-++.+++.+|+......+|-++.+..+. +..+.+ ....|..+.+-.-++.-++++..
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrk------L~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl 174 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE------LARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 174 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE------EEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred CceEEEEEeeecCceEEEecccCCceEEEEEeCCceee------eccCCCcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence 33444444445666788999988889999888754432 222222 12345555554433334555555
Q ss_pred -CCeEEEEeCCCccCCceeeeeeeeeccCccEEEEEeeCCCCCEEEEEe----cCCcEEEEECCCCcccc------ccc-
Q 015484 188 -DNKICLWDVSALAQDKVIDAMHVYEAHESVVEDVSWHLKNENLFGSAG----DDCQLMIWDLRTNQTQQ------RVK- 255 (406)
Q Consensus 188 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----~dg~i~i~d~~~~~~~~------~~~- 255 (406)
.|.+++++...+ .++.....+ +++. +++- ...-| -+|++.++... .+.
T Consensus 175 ~SG~lri~tpkeG-----------------S~~~ay~~~-gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~s 234 (313)
T d2hu7a1 175 SSGGLRVFDSGEG-----------------SFSSASISP-GMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSS 234 (313)
T ss_dssp TTEEEEEECCSSE-----------------EEEEEEECT-TSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHH
T ss_pred ccCCEEEecCCCC-----------------cccceeEcc-Ccee-eeccCCCCceEEE-EEecccCceeeeecCccccee
Confidence 677777765443 344444444 3333 2322 11223 44777654321 111
Q ss_pred ccCCCeeEEEecCCCCcEEEEEeCCCcEEEEeC
Q 015484 256 AHEKEVNYLSFNPYNEWVLATASSDTTVALFDM 288 (406)
Q Consensus 256 ~~~~~v~~i~~~~~~~~~l~~~~~dg~i~vwd~ 288 (406)
-....|+-+-+.|+++ +++.+-.||.-.+|+-
T Consensus 235 y~p~~I~~~~Y~Pdd~-L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 235 YRPTAITWLGYLPDGR-LAVVARREGRSAVFID 266 (313)
T ss_dssp HCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred ecceEEEeeeeCCCCc-EEEEEecCCchheeec
Confidence 1123455566899999 8788899999888863
|