Citrus Sinensis ID: 015596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccEEEEEEcEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccEEEEEccccccEEEEEccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mlprsrtmpsrihhgaveerhdVRHYLqvevqpkahieteatnpqanysncfdddgrlkrtgnfwttSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLsqcyrsgdpvtgqrnytYMDAVKanlggkkvIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIqdtirsppaeyktmKKATLFSIIVTTTFYLLCGCmgyaafgdlapnnlltgfgfynpywlidIANAAIVVHLVGAYQVFCQPLFAFVEKwsakkwpksdlvtaeyeipipfwgvYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILgamgfwpltvyFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDlktykpfktry
Flexible Loop (DISEMBL)
mlprsrtmpsrihhgaveerhdvRHYLQVEVQPKAHieteatnpqanysnCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSvagvvldlktykpfktry
Low Complexity Region (SEG)
MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered region (IsUnstruct)
**********************VRHYLQVEV***************NYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKP*****
Disordered Region (DISOPRED)
*************HGAVEERHDVRHYLQVEVQPK*****************FDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered Region (DISEMBL)
***********IHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Disordered Region (DISPRO)
*****RTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRSRTMPSRIHHGAVEERHDVRHYLQVEVQPKAHIETEATNPQANYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q9FN04	466	Amino acid permease 4 OS=	yes	no	0.613	0.532	0.714	1e-104
Q38967	493	Amino acid permease 2 OS=	no	no	0.613	0.503	0.690	1e-101
Q39134	476	Amino acid permease 3 OS=	no	no	0.613	0.521	0.689	1e-100
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.581	0.489	0.653	4e-96
P92934	481	Amino acid permease 6 OS=	no	no	0.668	0.561	0.542	6e-86
Q42400	485	Amino acid permease 1 OS=	no	no	0.603	0.503	0.552	6e-86
O80592	475	Amino acid permease 8 OS=	no	no	0.606	0.515	0.551	2e-83
Q9FF99	467	Probable amino acid perme	no	no	0.571	0.494	0.510	4e-58
Q9LRB5	441	Lysine histidine transpor	no	no	0.556	0.510	0.308	1e-19
Q9FKS8	446	Lysine histidine transpor	no	no	0.569	0.515	0.270	8e-19

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 214/249 (85%), Gaps = 1/249 (0%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK AT  SI VTTTFY+
Sbjct: 218 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYM 277

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQVF QP+FAF+EK 
Sbjct: 278 LCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQ 337

Query: 277 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 335
           +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+ISML+PFFNDVVGIL
Sbjct: 338 AAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGIL 397

Query: 336 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 395
           GA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA +GS+AGV+LDLK
Sbjct: 398 GALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLK 457

Query: 396 TYKPFKTRY 404
            YKPFKT Y
Sbjct: 458 VYKPFKTTY 466

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/249 (69%), Positives = 215/249 (86%), Gaps = 1/249 (0%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMKKAT  SI VTT FY+
Sbjct: 245 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYM 304

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCG MGYAAFGD AP NLLTGFGFYNP+WL+DIANAAIVVHLVGAYQVF QP+FAF+EK 
Sbjct: 305 LCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKS 364

Query: 277 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 335
            A+++P +D ++ E+EI IP F   Y++N+FR+V+R+ FVV TT+ISML+PFFNDVVGIL
Sbjct: 365 VAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGIL 424

Query: 336 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 395
           GA+GFWPLTVYFP+EMY  Q+K+ + +TRW+ LQ+L+V+C  I++VA +GS+AGV+LDLK
Sbjct: 425 GALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLK 484

Query: 396 TYKPFKTRY 404
            YKPFK+ Y
Sbjct: 485 VYKPFKSTY 493

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/248 (68%), Positives = 218/248 (87%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WR+ QALG IAFAYS+SIIL+EIQDT++SPP+E KTMKKATL S+ VTT FY+
Sbjct: 229 VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYM 288

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGDL+P NLLTGFGFYNPYWL+DIANAAIV+HL+GAYQV+CQPLFAF+EK 
Sbjct: 289 LCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQ 348

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           ++ ++P S+ +  + +IPIP +   +LN+FRL+WRT+FV++TT+ISMLLPFFNDVVG+LG
Sbjct: 349 ASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLG 408

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A+GFWPLTVYFP+EMY AQKKI R +TRW+ LQ+ ++ C  +++ AA GS+AGV+LDLK+
Sbjct: 409 ALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKS 468

Query: 397 YKPFKTRY 404
           YKPF++ Y
Sbjct: 469 YKPFRSEY 476

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  351 bits (901), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 162/248 (65%), Positives = 206/248 (83%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPPAE  TM+KAT  S+ VTT FY+
Sbjct: 233 VTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYM 292

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AIV+HLVGAYQV+CQPLFAFVEK 
Sbjct: 293 LCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKE 352

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           +++++P+S+ VT E +I +     + LNLFRLVWRT FV+ TTLISML+PFFNDVVG+LG
Sbjct: 353 ASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLG 412

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V+C F+++ AA GSV G+V DLK 
Sbjct: 413 AIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKV 472

Query: 397 YKPFKTRY 404
           YKPF++ +
Sbjct: 473 YKPFQSEF 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  318 bits (814), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 147/271 (54%), Positives = 201/271 (74%), Gaps = 1/271 (0%)

Query: 132 MDAVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 191
           +   KA  GG+ V        + + V+G +K+WR+ QA+G IAFAY++S +L+EIQDT++
Sbjct: 209 LSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLK 268

Query: 192 S-PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIA 250
           + PP+E K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID A
Sbjct: 269 AGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFA 328

Query: 251 NAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVW 310
           N  I VHL+GAYQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RLVW
Sbjct: 329 NVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVW 388

Query: 311 RTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQI 370
           RT +VV+T +++M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L+I
Sbjct: 389 RTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKI 448

Query: 371 LNVSCFFITLVAAIGSVAGVVLDLKTYKPFK 401
           L+ +CF ++LVAA GSV G++  LK +KPF+
Sbjct: 449 LSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQ 479

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  318 bits (814), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 192/248 (77%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+RS PAE K MK+A+L  +  TT FY+
Sbjct: 237 VTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVSTTTFFYI 296

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGC+GYAAFG+ AP + LT FGF+ P+WLID ANA I VHL+GAYQVF QP+F FVEK 
Sbjct: 297 LCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPIFQFVEKK 356

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
             + +P +  +T+EY + +PF G + ++LFRLVWRT +VV+TT+++M+ PFFN ++G++G
Sbjct: 357 CNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIG 416

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +   C  ++L+AA GS+AG++  +KT
Sbjct: 417 AASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISSVKT 476

Query: 397 YKPFKTRY 404
           YKPF+T +
Sbjct: 477 YKPFRTMH 484

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  309 bits (792), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 135/245 (55%), Positives = 185/245 (75%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A+L  +  TT FY+
Sbjct: 228 VTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYI 287

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQV+ QP F FVE+ 
Sbjct: 288 LCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEEN 347

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
             KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M+ PFFN ++G+LG
Sbjct: 348 CNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLG 407

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA+GS+ G++  +K+
Sbjct: 408 AFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKS 467

Query: 397 YKPFK 401
           YKPFK
Sbjct: 468 YKPFK 472

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/233 (51%), Positives = 165/233 (70%), Gaps = 2/233 (0%)

Query: 161 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 220
           +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKKA+  ++ + T F+  CGC
Sbjct: 230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query: 221 MGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 280
            GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG YQV+ QP+FA  E+   KK
Sbjct: 290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query: 281 WPKSDLVTAEYEIPIPFW--GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM 338
           +P++  +   Y   +P       +LN  R+  RT++V++TT ++++ P+FN+V+G++GA+
Sbjct: 350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query: 339 GFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 391
            FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L++ +GS+ G+V
Sbjct: 410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 21/246 (8%)

Query: 158 TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPA--EYKTMKKATLFSIIVTTTFY 215
           T   K++  L ALG +AFAY+   ++LEIQ TI S P       M +  + + IV    Y
Sbjct: 215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query: 216 LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 275
                +GY  FG+   +N+L       P WLI +AN  +V+H++G+YQ+F  P+F  +E 
Sbjct: 275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLET 332

Query: 276 WSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 335
              KK              + F   ++L   R + R+L+V  T ++++ +PFF  ++G  
Sbjct: 333 VLVKK--------------MNFNPSFKL---RFITRSLYVAFTMIVAICVPFFGGLLGFF 375

Query: 336 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 395
           G   F P T Y P  M+   KK  R    W       +    +T++A IG +  ++++ K
Sbjct: 376 GGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAK 435

Query: 396 TYKPFK 401
           TYK F 
Sbjct: 436 TYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 21/251 (8%)

Query: 150 IQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKT--MKKATLFS 207
           +QY     T    ++     LG +AFAY+   ++LEIQ TI S P +     M +  + +
Sbjct: 212 VQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVA 271

Query: 208 IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQ 267
            IV    Y     +GY  FG+   +N+L       P WLI  AN  +V+H++G+YQ++  
Sbjct: 272 YIVVALCYFPVALVGYYIFGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAM 329

Query: 268 PLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF 327
           P+F  +E    KK       T                  R   R  +V  T  + M  PF
Sbjct: 330 PVFDMMETLLVKKLNFRPTTT-----------------LRFFVRNFYVAATMFVGMTFPF 372

Query: 328 FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSV 387
           F  ++   G   F P T + P  ++ A  K  + +  W    +  V   F+ +++ IG +
Sbjct: 373 FGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGL 432

Query: 388 AGVVLDLKTYK 398
             +V+  K YK
Sbjct: 433 RTIVIQAKGYK 443

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
224103209	469	amino acid permease [Populus trichocarpa	0.613	0.528	0.858	1e-125
356541032	628	PREDICTED: LOW QUALITY PROTEIN: amino ac	0.611	0.393	0.822	1e-119
13676299	513	amino acid transporter [Glycine max]	0.611	0.481	0.822	1e-119
225428003	512	PREDICTED: amino acid permease 2 [Vitis	0.613	0.484	0.822	1e-119
255587378	484	amino acid transporter, putative [Ricinu	0.660	0.551	0.771	1e-118
356544864	513	PREDICTED: amino acid permease 2-like [G	0.611	0.481	0.814	1e-118
4138679	509	amino acid transporter [Vicia faba]	0.606	0.481	0.798	1e-114
449467509	418	PREDICTED: amino acid permease 4-like [C	0.886	0.856	0.516	1e-114
388497910	512	unknown [Medicago truncatula]	0.613	0.484	0.782	1e-113
224083500	463	amino acid permease [Populus trichocarpa	0.611	0.533	0.745	1e-109

>gi|224103209|ref|XP_002312967.1| amino acid permease [Populus trichocarpa] gi|222849375|gb|EEE86922.1| amino acid permease [Populus trichocarpa]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/248 (85%), Positives = 236/248 (95%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQKLWRSLQALGAIAFAYSFSIIL+EIQDTIRSPPAEYKTMKKATLFSII+TT FYL
Sbjct: 222 VTSTQKLWRSLQALGAIAFAYSFSIILIEIQDTIRSPPAEYKTMKKATLFSIIITTIFYL 281

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGDLAP NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQV+CQPLFAFVEKW
Sbjct: 282 LCGCMGYAAFGDLAPGNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQVYCQPLFAFVEKW 341

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA+KWPKSD VTAEYE+PIPF+GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVG+LG
Sbjct: 342 SARKWPKSDFVTAEYEVPIPFYGVYQLNFFRLVWRTIFVMLTTLIAMLMPFFNDVVGLLG 401

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           +MGFWPLTV+FPIEMY +QKKIGR T++W+GLQIL+++C  IT+ AA+GSVAGVVLDLKT
Sbjct: 402 SMGFWPLTVFFPIEMYISQKKIGRWTSQWIGLQILSMTCLMITIAAAVGSVAGVVLDLKT 461

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 462 YKPFKTSY 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541032|ref|XP_003538987.1| PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 229/248 (92%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KAT  SI VTT FYL
Sbjct: 381 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKATTLSIAVTTVFYL 440

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 441 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 500

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 501 SARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 560

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA+GS+AGVVLDLKT
Sbjct: 561 AFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAAVGSMAGVVLDLKT 620

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 621 YKPFKTSY 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13676299|gb|AAK33098.1| amino acid transporter [Glycine max]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 229/248 (92%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTM+KAT  SI VTT FYL
Sbjct: 266 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMRKATTLSIAVTTVFYL 325

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 326 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 385

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA+KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 386 SARKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 445

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVYFPI+MY +QKKIGR T+RWLGLQ+L+ SC  I+L+AA+GS+AGVVLDLKT
Sbjct: 446 AFGFWPLTVYFPIDMYISQKKIGRWTSRWLGLQLLSASCLIISLLAAVGSMAGVVLDLKT 505

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 506 YKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428003|ref|XP_002278086.1| PREDICTED: amino acid permease 2 [Vitis vinifera] gi|297744622|emb|CBI37884.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 227/248 (91%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQKLWRSLQALGAIAFAYSFS+IL+EIQDTI+SPPAEYKTM+KAT+ SI VTT FY+
Sbjct: 265 VTSTQKLWRSLQALGAIAFAYSFSLILIEIQDTIKSPPAEYKTMRKATVLSIAVTTAFYM 324

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGC GYAAFGDLAP NLLTGFGFY+PYWL+DIAN AI+VHLVGAYQV+CQPLFAFVEKW
Sbjct: 325 LCGCFGYAAFGDLAPGNLLTGFGFYDPYWLLDIANIAIIVHLVGAYQVYCQPLFAFVEKW 384

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA KWPKSD VT EY++PIP +GVYQLN FRLVWRT+FVVLTTLI+MLLPFFNDVVGILG
Sbjct: 385 SAHKWPKSDFVTEEYDLPIPCYGVYQLNFFRLVWRTIFVVLTTLIAMLLPFFNDVVGILG 444

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVYFP+EMY +QKKIGR T+RW+ LQIL+ +C  I+L AA+GSVAGVVLDLKT
Sbjct: 445 AFGFWPLTVYFPVEMYISQKKIGRWTSRWVALQILSFACLLISLAAAVGSVAGVVLDLKT 504

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 505 YKPFKTSY 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587378|ref|XP_002534252.1| amino acid transporter, putative [Ricinus communis] gi|223525639|gb|EEF28130.1| amino acid transporter, putative [Ricinus communis]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/271 (77%), Positives = 236/271 (87%), Gaps = 4/271 (1%)

Query: 134 AVKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSP 193
           A K +L G  +   G + +  L +T TQKLWRSLQALGAIAFAYSFS IL+EIQ+T++SP
Sbjct: 218 AAKGSLTGISI---GTVTHAGL-LTSTQKLWRSLQALGAIAFAYSFSAILIEIQETVKSP 273

Query: 194 PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAA 253
           PAEYKTMKKAT FSI VTT FYLLCGC GYAAFGD AP N+LTGFGFYNPYWL+DIAN A
Sbjct: 274 PAEYKTMKKATAFSIAVTTFFYLLCGCFGYAAFGDNAPGNILTGFGFYNPYWLLDIANVA 333

Query: 254 IVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTL 313
           I+VHLVGAYQVFCQPLFAF+EKWSA+KWP SD VTAEYEI I F GVYQLN FR+VWRT+
Sbjct: 334 IIVHLVGAYQVFCQPLFAFIEKWSARKWPNSDFVTAEYEIRILFSGVYQLNFFRIVWRTI 393

Query: 314 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNV 373
           FV++TTLI+ML+PFFNDVVGILGAMGFWPLTVYFPIEMY +QK+IGR T++WL LQIL+V
Sbjct: 394 FVIVTTLIAMLMPFFNDVVGILGAMGFWPLTVYFPIEMYISQKRIGRRTSQWLALQILSV 453

Query: 374 SCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
            C FIT+ AA+GSVAGVVLDLKTYKPFKT Y
Sbjct: 454 CCLFITIAAAVGSVAGVVLDLKTYKPFKTSY 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544864|ref|XP_003540867.1| PREDICTED: amino acid permease 2-like [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/248 (81%), Positives = 228/248 (91%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT TQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+ PPAE+KTM+KAT  SI VTT FYL
Sbjct: 266 VTSTQKIWRSLQALGAMAFAYSFSIILIEIQDTIKFPPAEHKTMRKATTLSIAVTTVFYL 325

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGD AP NLLTGFGFYNPYWL+DIAN AIV+HLVGAYQVF QPLFAFVEKW
Sbjct: 326 LCGCMGYAAFGDNAPGNLLTGFGFYNPYWLLDIANLAIVIHLVGAYQVFSQPLFAFVEKW 385

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           S +KWPKS+ VTAEY+IPIP +GVYQLN FRLVWRT+FV+LTTLI+ML+PFFNDVVGILG
Sbjct: 386 SVRKWPKSNFVTAEYDIPIPCFGVYQLNFFRLVWRTIFVLLTTLIAMLMPFFNDVVGILG 445

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVYFPI+MY +QKKIGR T+RW+GLQ+L+VSC  I+L+AA+GS+AGVVLDLKT
Sbjct: 446 AFGFWPLTVYFPIDMYISQKKIGRWTSRWIGLQLLSVSCLIISLLAAVGSMAGVVLDLKT 505

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 506 YKPFKTSY 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4138679|emb|CAA70778.1| amino acid transporter [Vicia faba]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/248 (79%), Positives = 223/248 (89%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VTGTQK+WRSLQALGA+AFAYSFSIIL+EIQDTI+SPPAE+KTMKKAT+ SI+VTT FY+
Sbjct: 262 VTGTQKVWRSLQALGAMAFAYSFSIILIEIQDTIKSPPAEHKTMKKATMLSIMVTTVFYI 321

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHLVGAYQVF QP FAFVEKW
Sbjct: 322 LCGSMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANFAIVVHLVGAYQVFSQPFFAFVEKW 381

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA KWPK+  VT EY+IPIP  GVY+LNLFRL+WRT+FV+LTTLI+MLLPFFNDVVG+LG
Sbjct: 382 SAHKWPKNKFVTEEYDIPIPCIGVYKLNLFRLIWRTIFVLLTTLIAMLLPFFNDVVGLLG 441

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVYFPI+MY +QKKIGR T RWLGLQ+L+  C  I+ +AA+GS+AGVVLDLKT
Sbjct: 442 AFGFWPLTVYFPIDMYISQKKIGRWTNRWLGLQMLSGCCLIISTLAAVGSIAGVVLDLKT 501

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 502 YKPFKTSY 509

Source: Vicia faba

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467509|ref|XP_004151465.1| PREDICTED: amino acid permease 4-like [Cucumis sativus]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/412 (51%), Positives = 275/412 (66%), Gaps = 54/412 (13%)

Query: 47  NYSNCFDDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN 106
           N S  FDDDG  KRTG FWT S+HIITAVIGSGVLSLAWAIAQLGW+AGP+V+ILFA + 
Sbjct: 7   NDSASFDDDGCPKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPSVMILFAFIG 66

Query: 107 LYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL--------------------------- 139
            YT+ LL+ CYRSGDPV G+RN TYM AV++ L                           
Sbjct: 67  YYTSCLLADCYRSGDPVNGKRNPTYMHAVRSLLGETHMVACGIMQYINLIGITIGYTIAS 126

Query: 140 ----------------GGKK---------VIFCGLIQYLNLFVTGTQKLWRSLQALGAIA 174
                           GGK          ++  G+++ +   +    ++W        ++
Sbjct: 127 SISMMAIKRSNCFHSSGGKNPCHISSNPFMLSFGIVEIILSQIPNFDQIWWLSIVAAIMS 186

Query: 175 FAYSFSIILLEI-QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNN 233
           F YS   + L I +DTIRSPP+E KTMKKA  FSI +TT FY+LCGCMGYAAFG+ AP N
Sbjct: 187 FTYSSIGLTLGIAKDTIRSPPSETKTMKKAAGFSITLTTIFYMLCGCMGYAAFGNTAPGN 246

Query: 234 LLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEI 293
           LLTGFGFYNP+WL+DIAN +IVVHLVGAYQVF QP++AFVEK   + WP +   T EY++
Sbjct: 247 LLTGFGFYNPFWLLDIANVSIVVHLVGAYQVFSQPVYAFVEKKVVQTWPDTPFFTKEYKL 306

Query: 294 PI-PFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMY 352
            +      Y +NLFRLVWRTLFV  TT+++MLLPFFND+VG +GA+ FWP+TVYFP++MY
Sbjct: 307 SLFSSRSSYNVNLFRLVWRTLFVCFTTIVAMLLPFFNDIVGFIGALQFWPMTVYFPVQMY 366

Query: 353 KAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
             QKK+ + + +W+ +Q +++ C  I+L AA+GS++G++LDLK YKPFKT Y
Sbjct: 367 VVQKKVPKWSVKWICVQTMSMGCLLISLAAAVGSISGIMLDLKVYKPFKTMY 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497910|gb|AFK37021.1| unknown [Medicago truncatula]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/248 (78%), Positives = 224/248 (90%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VTGTQK+WRSLQALGA+AF+YSFSIIL+EIQDT++SPP+E+KTMKKATL SI+VT  FYL
Sbjct: 265 VTGTQKIWRSLQALGAMAFSYSFSIILIEIQDTLKSPPSEHKTMKKATLVSIMVTAVFYL 324

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCG MGYAAFGD  P NLLTGFGFYNPYWL+DIAN AIVVHL+GAYQVF QP FAFVEKW
Sbjct: 325 LCGGMGYAAFGDHVPGNLLTGFGFYNPYWLLDIANLAIVVHLIGAYQVFSQPFFAFVEKW 384

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           SA+KWPK++ VTAE+EIPIP  GVYQLN FRL+WRTLFV+LTT+I+MLLPFFNDVVGILG
Sbjct: 385 SARKWPKNNFVTAEHEIPIPCIGVYQLNFFRLIWRTLFVLLTTIIAMLLPFFNDVVGILG 444

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A GFWPLTVY+PI+MY +QKKIGR T +WL LQ+L+  C  I+++AA+GS+AGVVLDLKT
Sbjct: 445 AFGFWPLTVYYPIDMYISQKKIGRWTKKWLALQVLSGCCLIISILAAVGSIAGVVLDLKT 504

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 505 YKPFKTSY 512

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/248 (74%), Positives = 221/248 (89%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
           VT T+K+WRS QALGAIAFAYS+S+IL+EIQDTI+SPPAE KTMKKA   SI+VTTTFY+
Sbjct: 216 VTETEKIWRSFQALGAIAFAYSYSVILIEIQDTIKSPPAESKTMKKAAKISIVVTTTFYM 275

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           LCGCMGYAAFGD AP NLLTGFGFYNPYWLIDIAN AIV+HL+GAYQVFCQPLFAF+EKW
Sbjct: 276 LCGCMGYAAFGDQAPGNLLTGFGFYNPYWLIDIANVAIVIHLIGAYQVFCQPLFAFIEKW 335

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
           + +KWP++  +T E++IP+P +  Y+LNLFR+VWRT+FV+LTT+ISMLLPFFNDVVGILG
Sbjct: 336 ANQKWPENYFITKEFKIPVPGFRPYKLNLFRMVWRTIFVLLTTVISMLLPFFNDVVGILG 395

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
           A+GFWPLTVYFP+EMY  QKKI + +TRW+ LQ+L+++C  I+LVA  GS+AGVVLDLK 
Sbjct: 396 ALGFWPLTVYFPVEMYIVQKKIPKWSTRWICLQMLSMACLVISLVAVAGSIAGVVLDLKV 455

Query: 397 YKPFKTRY 404
           YKPFKT Y
Sbjct: 456 YKPFKTSY 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.683	0.579	0.634	1.7e-141
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.613	0.532	0.714	5.6e-141
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.695	0.569	0.628	3.9e-140
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.655	0.552	0.627	1.2e-132
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.663	0.557	0.542	5.9e-120
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.606	0.515	0.551	7.6e-118
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.665	0.554	0.523	1.6e-117
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.571	0.494	0.515	3.4e-92
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.299	0.274	0.368	6.8e-35
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.299	0.274	0.368	3e-33

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 1.7e-141, Sum P(2) = 1.7e-141
 Identities = 179/282 (63%), Positives = 235/282 (83%)

Query:   128 NYTYMDAVKANLGGKKVIFCGLIQY----LNL-FVTGTQKLWRSLQALGAIAFAYSFSII 182
             ++TY  A  A LG  +V+  G ++     +++  VT TQK+WR+ QALG IAFAYS+SII
Sbjct:   196 SFTYSSAGLA-LGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSII 254

Query:   183 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYN 242
             L+EIQDT++SPP+E KTMKKATL S+ VTT FY+LCGCMGYAAFGDL+P NLLTGFGFYN
Sbjct:   255 LIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYN 314

Query:   243 PYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQ 302
             PYWL+DIANAAIV+HL+GAYQV+CQPLFAF+EK ++ ++P S+ +  + +IPIP +   +
Sbjct:   315 PYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLR 374

Query:   303 LNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGT 362
             LN+FRL+WRT+FV++TT+ISMLLPFFNDVVG+LGA+GFWPLTVYFP+EMY AQKKI R +
Sbjct:   375 LNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWS 434

Query:   363 TRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
             TRW+ LQ+ ++ C  +++ AA GS+AGV+LDLK+YKPF++ Y
Sbjct:   435 TRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 5.6e-141, Sum P(2) = 5.6e-141
 Identities = 178/249 (71%), Positives = 214/249 (85%)

Query:   157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
             VT TQK+WR+ QALG IAFAYS+S++L+EIQDT+RSPPAE KTMK AT  SI VTTTFY+
Sbjct:   218 VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAVTTTFYM 277

Query:   217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
             LCGCMGYAAFGD AP NLLTGFGFYNP+WL+D+ANAAIV+HLVGAYQVF QP+FAF+EK 
Sbjct:   278 LCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIFAFIEKQ 337

Query:   277 SAKKWPKSDLVTAEYEIPIP-FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 335
             +A ++P SDLVT EYEI IP F   Y++N+FR V+R+ FVVLTT+ISML+PFFNDVVGIL
Sbjct:   338 AAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGIL 397

Query:   336 GAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLK 395
             GA+GFWPLTVYFP+EMY  Q+K+ R + +W+ LQ+L+  C  ITLVA +GS+AGV+LDLK
Sbjct:   398 GALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLK 457

Query:   396 TYKPFKTRY 404
              YKPFKT Y
Sbjct:   458 VYKPFKTTY 466

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
 Identities = 181/288 (62%), Positives = 233/288 (80%)

Query:   123 VTGQRNYTYMDAVKANLGGKKV----IFCGLIQYLNL-FVTGTQKLWRSLQALGAIAFAY 177
             V    ++TY  A+   LG  +V    +F G +  +++  VT TQK+WR+ QALG IAFAY
Sbjct:   207 VAAVMSFTY-SAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAY 265

Query:   178 SFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG 237
             S+S++L+EIQDT+RSPPAE KTMKKAT  SI VTT FY+LCG MGYAAFGD AP NLLTG
Sbjct:   266 SYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTG 325

Query:   238 FGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIP- 296
             FGFYNP+WL+DIANAAIVVHLVGAYQVF QP+FAF+EK  A+++P +D ++ E+EI IP 
Sbjct:   326 FGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPG 385

Query:   297 FWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK 356
             F   Y++N+FR+V+R+ FVV TT+ISML+PFFNDVVGILGA+GFWPLTVYFP+EMY  Q+
Sbjct:   386 FKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQR 445

Query:   357 KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
             K+ + +TRW+ LQ+L+V+C  I++VA +GS+AGV+LDLK YKPFK+ Y
Sbjct:   446 KVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
 Identities = 170/271 (62%), Positives = 218/271 (80%)

Query:   135 VKANLGGKKVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPP 194
             +K +L G  V   G +  L+  VT +QK+WR+ Q+LG IAFAYS+S+IL+EIQDT++SPP
Sbjct:   215 IKGSLTGVTV---GTVT-LSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPP 270

Query:   195 AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAI 254
             AE  TM+KAT  S+ VTT FY+LCGC+GYAAFGD AP NLL   GF NPYWL+DIAN AI
Sbjct:   271 AEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAI 330

Query:   255 VVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGV-YQLNLFRLVWRTL 313
             V+HLVGAYQV+CQPLFAFVEK +++++P+S+ VT E +I + F G  + LNLFRLVWRT 
Sbjct:   331 VIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQL-FPGKPFNLNLFRLVWRTF 389

Query:   314 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNV 373
             FV+ TTLISML+PFFNDVVG+LGA+GFWPLTVYFP+EMY AQK + R  T+W+ LQ+L+V
Sbjct:   390 FVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSV 449

Query:   374 SCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
             +C F+++ AA GSV G+V DLK YKPF++ +
Sbjct:   450 TCLFVSVAAAAGSVIGIVSDLKVYKPFQSEF 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
 Identities = 148/273 (54%), Positives = 203/273 (74%)

Query:   132 MDAVKANLGGKKV--IFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDT 189
             +   KA  GG+ V     G+   + + V+G +K+WR+ QA+G IAFAY++S +L+EIQDT
Sbjct:   209 LSIAKAAGGGEHVRTTLTGVT--VGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDT 266

Query:   190 IRS-PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLID 248
             +++ PP+E K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP N LTGFGFY P+WLID
Sbjct:   267 LKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLID 326

Query:   249 IANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRL 308
              AN  I VHL+GAYQVFCQP+F FVE  SAK+WP +  +T EY+I +P  G + +N  RL
Sbjct:   327 FANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRL 386

Query:   309 VWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGL 368
             VWRT +VV+T +++M+ PFFND +G++GA  FWPLTVYFPIEM+ AQKKI + +  W  L
Sbjct:   387 VWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWL 446

Query:   369 QILNVSCFFITLVAAIGSVAGVVLDLKTYKPFK 401
             +IL+ +CF ++LVAA GSV G++  LK +KPF+
Sbjct:   447 KILSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQ 479

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 135/245 (55%), Positives = 185/245 (75%)

Query:   157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
             VT ++K+W+  QA+G IAF+Y+F+ IL+EIQDT+RS P E K MK+A+L  +  TT FY+
Sbjct:   228 VTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYI 287

Query:   217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
             LCGC+GYAAFG+ AP + LT FGFY PYWLID ANA I +HL+GAYQV+ QP F FVE+ 
Sbjct:   288 LCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEEN 347

Query:   277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
               KKWP+S+ +  EY   +P  G  ++NLFRLVWRT +VVLTT ++M+ PFFN ++G+LG
Sbjct:   348 CNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLG 407

Query:   337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 396
             A  FWPLTVYFP+ M+ AQ K+ + + RWL L +L + C  ++ +AA+GS+ G++  +K+
Sbjct:   408 AFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKS 467

Query:   397 YKPFK 401
             YKPFK
Sbjct:   468 YKPFK 472

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 1.6e-117, Sum P(2) = 1.6e-117
 Identities = 143/273 (52%), Positives = 201/273 (73%)

Query:   134 AVKANLGGK--KVIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 191
             A+    GGK  K    G    + + VT  QK+WRS QA+G IAFAY+++ +L+EIQDT+R
Sbjct:   214 AIATVAGGKVGKTSMTGTA--VGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLR 271

Query:   192 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIAN 251
             S PAE K MK+A+L  +  TT FY+LCGC+GYAAFG+ AP + LT FGF+ P+WLID AN
Sbjct:   272 SSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFAN 331

Query:   252 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWR 311
             A I VHL+GAYQVF QP+F FVEK   + +P +  +T+EY + +PF G + ++LFRLVWR
Sbjct:   332 ACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWR 391

Query:   312 TLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQIL 371
             T +VV+TT+++M+ PFFN ++G++GA  FWPLTVYFP+EM+ AQ KI + + RW+ L+ +
Sbjct:   392 TAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTM 451

Query:   372 NVSCFFITLVAAIGSVAGVVLDLKTYKPFKTRY 404
                C  ++L+AA GS+AG++  +KTYKPF+T +
Sbjct:   452 CYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMH 484

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 120/233 (51%), Positives = 166/233 (71%)

Query:   161 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 220
             +K+W   QALG IAF+Y FSIILLEIQDT+RSPPAE +TMKKA+  ++ + T F+  CGC
Sbjct:   230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query:   221 MGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK 280
              GYAAFGD  P NLLTGFGFY P+WL+D ANA IV+HLVG YQV+ QP+FA  E+   KK
Sbjct:   290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query:   281 WPKSDLVTAEYEIPIPFW-G-VYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM 338
             +P++  +   Y   +P   G   +LN  R+  RT++V++TT ++++ P+FN+V+G++GA+
Sbjct:   350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query:   339 GFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 391
              FWPL VYFP+EM   QKKI   T  WL L+  +  C  + L++ +GS+ G+V
Sbjct:   410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 208 (78.3 bits), Expect = 6.8e-35, Sum P(3) = 6.8e-35
 Identities = 46/125 (36%), Positives = 70/125 (56%)

Query:   158 TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAE--YKTMKKATLFSIIVTTTFY 215
             T T K++    ALG +AFAY+   ++LEIQ TI S P +   K M K  + + I+    Y
Sbjct:   215 TSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCY 274

Query:   216 LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 275
                  +GY AFG+   +N+L       P WLI +AN  +V+H++G+YQ++  P+F  +E 
Sbjct:   275 FPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIET 332

Query:   276 WSAKK 280
                KK
Sbjct:   333 VLVKK 337

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.0e-33, Sum P(3) = 3.0e-33
 Identities = 46/125 (36%), Positives = 68/125 (54%)

Query:   158 TGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPA-EYKT-MKKATLFSIIVTTTFY 215
             T   K++  L ALG +AFAY+   ++LEIQ TI S P    K  M +  + + IV    Y
Sbjct:   215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query:   216 LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK 275
                  +GY  FG+   +N+L       P WLI +AN  +V+H++G+YQ+F  P+F  +E 
Sbjct:   275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLET 332

Query:   276 WSAKK 280
                KK
Sbjct:   333 VLVKK 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN04	AAP4_ARATH	No assigned EC number	0.7148	0.6138	0.5321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrAAP9 amino acid permease (469 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	7e-58
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	5e-26

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  194 bits (494), Expect = 7e-58
 Identities = 78/237 (32%), Positives = 115/237 (48%), Gaps = 17/237 (7%)

Query: 157 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL 216
                KL R   A+G I FA+    +LL IQ+T++SP    K M K  L +II+ T  Y+
Sbjct: 186 AKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF-KAMTKVLLTAIIIVTVLYI 244

Query: 217 LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKW 276
           L G +GY AFG+    N+L         WLIDIAN  +V+HL+ +Y +   P+   VE  
Sbjct: 245 LVGLVGYLAFGNNVKGNILLNLP--KSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENL 302

Query: 277 SAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILG 336
             +K        A  +            L R+V R+  VV+T LI++ +PF  D + ++G
Sbjct: 303 LFRKG-------ASGKHNPKSK------LLRVVIRSGLVVITYLIAISVPFLGDFLSLVG 349

Query: 337 AMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQ-ILNVSCFFITLVAAIGSVAGVVL 392
           A    PLT   P   +   KK  + +   L    IL+V C  I L+     VAG+++
Sbjct: 350 ATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  108 bits (271), Expect = 5e-26
 Identities = 37/97 (38%), Positives = 55/97 (56%)

Query: 60  RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRS 119
            T + W    ++I A+IG+GVLSL +A  QLGW+ G  +L++  L++LYT +LL QC + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 120 GDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLF 156
            D V G+R  +Y D      G K  +       +NLF
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLF 97

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.95
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.85
PRK10483	414	tryptophan permease; Provisional	99.84
PRK09664	415	tryptophan permease TnaB; Provisional	99.82
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.82
PRK15132	403	tyrosine transporter TyrP; Provisional	99.81
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.78
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.73
PRK10655	438	potE putrescine transporter; Provisional	99.35
KOG1287	479	consensus Amino acid transporters [Amino acid tran	99.31
PRK10644	445	arginine:agmatin antiporter; Provisional	99.28
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.23
PRK10249	458	phenylalanine transporter; Provisional	99.17
PRK15049	499	L-asparagine permease; Provisional	99.16
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.14
PRK11021	410	putative transporter; Provisional	99.14
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.11
PRK11387	471	S-methylmethionine transporter; Provisional	99.11
TIGR00930	953	2a30 K-Cl cotransporter.	99.09
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.08
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.06
PRK10836	489	lysine transporter; Provisional	99.05
PRK10238	456	aromatic amino acid transporter; Provisional	99.04
PRK10746	461	putative transport protein YifK; Provisional	99.04
TIGR00909	429	2A0306 amino acid transporter.	98.99
PRK10580	457	proY putative proline-specific permease; Provision	98.99
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.97
TIGR00913	478	2A0310 amino acid permease (yeast).	98.96
TIGR00911	501	2A0308 L-type amino acid transporter.	98.95
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.9
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.87
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.84
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.8
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.71
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.59
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.4
PRK15238	496	inner membrane transporter YjeM; Provisional	98.4
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.34
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.32
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.2
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.18
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.11
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.08
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.52
KOG1286	554	consensus Amino acid transporters [Amino acid tran	97.45
KOG1289	550	consensus Amino acid transporters [Amino acid tran	97.04
KOG3832	319	consensus Predicted amino acid transporter [Genera	96.97
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	95.98
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	95.9
PRK11375	484	allantoin permease; Provisional	95.84
COG3949	349	Uncharacterized membrane protein [Function unknown	95.46
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	94.25
COG1457	442	CodB Purine-cytosine permease and related proteins	94.16
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	93.87
KOG2082	1075	consensus K+/Cl- cotransporter KCC1 and related tr	93.83
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	92.88
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	92.81
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	92.76
PRK09442	483	panF sodium/panthothenate symporter; Provisional	92.19
PRK12488	549	acetate permease; Provisional	90.62
TIGR00813	407	sss transporter, SSS family. have different number	89.78
PRK11017	404	codB cytosine permease; Provisional	88.1
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	87.45
COG1966	575	CstA Carbon starvation protein, predicted membrane	86.79
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	86.78
PRK15015	701	carbon starvation protein A; Provisional	86.53
PHA02764	399	hypothetical protein; Provisional	80.6

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-52  Score=406.96  Aligned_cols=318  Identities=42%  Similarity=0.754  Sum_probs=284.9

Q ss_pred             CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      ...++|++|++++.+|.++.++|+|+|+||||++++||+.|++++++++++++||..+|.+|.+.++.+.++|.++|.|+
T Consensus        31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl  110 (437)
T KOG1303|consen   31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL  110 (437)
T ss_pred             ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcceeeeeeeeeeEe----------------------------------------------------------
Q 015596          135 VKANLGGKKVIFCGLIQYLNLF----------------------------------------------------------  156 (404)
Q Consensus       135 ~~~~~G~~~~~l~~~~~~~~l~----------------------------------------------------------  156 (404)
                      ++++||+++++++...|+++++                                                          
T Consensus       111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~  190 (437)
T KOG1303|consen  111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSL  190 (437)
T ss_pred             HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence            9999999998888776655432                                                          


Q ss_pred             ------------------ec---C--c-h--hhh---HH-HHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596          157 ------------------VT---G--T-Q--KLW---RS-LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF  206 (404)
Q Consensus       157 ------------------~~---~--~-~--~~~---~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~  206 (404)
                                        .+   .  . .  ..+   .. ++++|+++|+|++|.++|+||++||+|    ++|+|++.+
T Consensus       191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~li  266 (437)
T KOG1303|consen  191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLI  266 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHH
Confidence                              00   0  0 0  000   12 799999999999999999999999999    779999999


Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcc
Q 015596          207 SIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDL  286 (404)
Q Consensus       207 a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~  286 (404)
                      ++.+++.+|+.+++.||++|||+++++++.|++  +|.|+...+|+++.+|++.+|+++.+|+.+.+|++...++++  +
T Consensus       267 s~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~  342 (437)
T KOG1303|consen  267 SYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F  342 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c
Confidence            999999999999999999999999999999996  589999999999999999999999999999999998654332  1


Q ss_pred             ccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHH
Q 015596          287 VTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWL  366 (404)
Q Consensus       287 ~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~  366 (404)
                                  ++ +....|.+.|+.+++.++++|+.+|+|+++++++||+..+++++++|+++|++++|.+++..+|+
T Consensus       343 ------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~  409 (437)
T KOG1303|consen  343 ------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWL  409 (437)
T ss_pred             ------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence                        00 11268999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015596          367 GLQIL-NVSCFFITLVAAIGSVAGVVLD  393 (404)
Q Consensus       367 ~~~~~-~~~~~~~~v~~~~~si~~ii~~  393 (404)
                      +.+.+ .++++++++.+.++++++++.+
T Consensus       410 ~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  410 LNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99988 7999999999999999988753

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-47  Score=367.14  Aligned_cols=308  Identities=18%  Similarity=0.268  Sum_probs=262.0

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN  138 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~  138 (404)
                      ++..|..++..|+.|+++|+|+|++|+||+++||+.|.+..++++.++.||++.|++|.+..+++.+....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999888777776678999999877


Q ss_pred             cCC----------Ccceeeeeee----------eeeEe------------------------------------------
Q 015596          139 LGG----------KKVIFCGLIQ----------YLNLF------------------------------------------  156 (404)
Q Consensus       139 ~G~----------~~~~l~~~~~----------~~~l~------------------------------------------  156 (404)
                      +..          +++.++++..          |+-+.                                          
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Ls  203 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILS  203 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            533          3333332211          11000                                          


Q ss_pred             -------------------------ec-----CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhH---HH
Q 015596          157 -------------------------VT-----GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK---KA  203 (404)
Q Consensus       157 -------------------------~~-----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~---~~  203 (404)
                                               .+     ...++-++...+|+.+|||+++.++.|++++||+|    ++|.   ++
T Consensus       204 p~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gV  279 (449)
T KOG1304|consen  204 PFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGV  279 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccch
Confidence                                     00     01112358899999999999999999999999999    9999   99


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK  283 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~  283 (404)
                      +..++.+++++|+.+|++||++|||++++.++.|+|  + +|+.+.+++++++++.++||++++|..+.+|+.+.++...
T Consensus       280 Ln~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~  356 (449)
T KOG1304|consen  280 LNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE  356 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence            999999999999999999999999999999999997  3 8999999999999999999999999999999987654321


Q ss_pred             CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC---
Q 015596          284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR---  360 (404)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~---  360 (404)
                      .              +   .++..+.+|+.+++++..+|.++|+++.+++++||++++.+.+++|+++++..++.+.   
T Consensus       357 ~--------------~---~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~  419 (449)
T KOG1304|consen  357 N--------------R---KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGR  419 (449)
T ss_pred             c--------------h---hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCc
Confidence            1              0   1278899999999999999999999999999999999999999999999999876543   


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596          361 GTTRWLGLQILNVSCFFITLVAAIGSVAGV  390 (404)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~v~~~~~si~~i  390 (404)
                      +.++++.+..+.++|++..++|++.|+.++
T Consensus       420 ~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  420 FMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            456667788888888888899999888653

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.5e-45  Score=369.59  Aligned_cols=305  Identities=17%  Similarity=0.246  Sum_probs=247.4

Q ss_pred             ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596           60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL  139 (404)
Q Consensus        60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~  139 (404)
                      ++++..++++|++|+++|+|+|++|+||+++||+.|++++++++.++.||.++|.++.+.    .+.  .+|+|+++.++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~----~~~--~sY~~la~~~~  131 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK----TNI--RTYEGVARVLL  131 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCC--CCHHHHHHHHh
Confidence            467789999999999999999999999999999999999999999999999999999873    333  49999999999


Q ss_pred             CCCcceeeeeeeeee--------------------------------------Ee-------------------------
Q 015596          140 GGKKVIFCGLIQYLN--------------------------------------LF-------------------------  156 (404)
Q Consensus       140 G~~~~~l~~~~~~~~--------------------------------------l~-------------------------  156 (404)
                      |+++++++++.+.+.                                      +.                         
T Consensus       132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i  211 (467)
T PTZ00206        132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI  211 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence            999887653211100                                      00                         


Q ss_pred             ------------e-----c--Cc------------h--hh----hHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhh
Q 015596          157 ------------V-----T--GT------------Q--KL----WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKT  199 (404)
Q Consensus       157 ------------~-----~--~~------------~--~~----~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~  199 (404)
                                  +     .  ++            .  ..    .+.+.++|+++|||.||.+++++++|||+|++  ++
T Consensus       212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~  289 (467)
T PTZ00206        212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GK  289 (467)
T ss_pred             HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hH
Confidence                        0     0  00            0  01    24788999999999999999999999998743  88


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596          200 MKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK  279 (404)
Q Consensus       200 ~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~  279 (404)
                      +.+++..++.+++++|.++|++||+.||++++++++.|++.. .+....+++++.++.++.+||++.+|+|+.+++.+..
T Consensus       290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~  368 (467)
T PTZ00206        290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW  368 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999321 2344677888999999999999999999999987632


Q ss_pred             cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc--
Q 015596          280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKK--  357 (404)
Q Consensus       280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~--  357 (404)
                        +..         +.+   .    +++...+..++++++++|+++|+++.+++++||++++.++|++|+++|++...  
T Consensus       369 --~~~---------~~~---~----~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~  430 (467)
T PTZ00206        369 --DAR---------KVA---F----WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFT  430 (467)
T ss_pred             --Ccc---------cCc---h----hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence              211         111   1    44556667777788999999999999999999999999999999999998421  


Q ss_pred             CCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596          358 IGR-GTTRWLGLQILNVSCFFITLVAAIGSVAGVV  391 (404)
Q Consensus       358 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~si~~ii  391 (404)
                      +++ ...+|+..+.+.++|++..++|+++|+++++
T Consensus       431 ~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        431 WQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            112 2223456778888999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=6.1e-43  Score=350.99  Aligned_cols=319  Identities=18%  Similarity=0.205  Sum_probs=251.1

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---Cc--c--cccH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVT---GQ--R--NYTY  131 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~---g~--~--~~~y  131 (404)
                      .++++..++.+|+++..+|+|+|+||+||+++||++|++.+++.++++.||.++|.+++....++.   +.  +  ..+|
T Consensus        43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~  122 (473)
T PLN03074         43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW  122 (473)
T ss_pred             cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence            446789999999999999999999999999999999999999999999999999998754322121   21  1  1378


Q ss_pred             HHHHHHHcCCCcceeeeeeeeee------------------------------Ee-------------------------
Q 015596          132 MDAVKANLGGKKVIFCGLIQYLN------------------------------LF-------------------------  156 (404)
Q Consensus       132 ~~l~~~~~G~~~~~l~~~~~~~~------------------------------l~-------------------------  156 (404)
                      .|+++..+||+++.+......+.                              ++                         
T Consensus       123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~  202 (473)
T PLN03074        123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLL  202 (473)
T ss_pred             HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999999998765432111100                              00                         


Q ss_pred             -------------e---cC-------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHH
Q 015596          157 -------------V---TG-------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTT  213 (404)
Q Consensus       157 -------------~---~~-------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~  213 (404)
                                   +   .+       ..+...++.++++++|+|++|.++|+++++||+|    ++|+++..++...+++
T Consensus       203 ~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~  278 (473)
T PLN03074        203 MTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLT  278 (473)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHH
Confidence                         0   00       0123357778889999999999999999999999    8999999999999999


Q ss_pred             HHHHHHhHHHhhcCCCCc--hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccccccc
Q 015596          214 FYLLCGCMGYAAFGDLAP--NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEY  291 (404)
Q Consensus       214 ~y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~  291 (404)
                      +|+.+|+.||++|||+++  ++.+.|+|.  +. ...++++++++++..+|+++++|+.+.+|+.+..+  +.    +  
T Consensus       279 ~y~~~~~~gY~~fG~~~~~~s~~l~~lp~--~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~----k--  347 (473)
T PLN03074        279 LTLPSAAAVYWAFGDELLTHSNAFSLLPR--SG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT----K--  347 (473)
T ss_pred             HHHHHHHeeeeeechhhhhchhHHhcCCC--ch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc----c--
Confidence            999999999999999975  355666752  23 36799999999999999999999999998876321  10    0  


Q ss_pred             cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC------------
Q 015596          292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG------------  359 (404)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~------------  359 (404)
                              .   ...|++.|+.++++++++|+.+|+|+.+++++||++++.++|++|+++|++.++++            
T Consensus       348 --------~---~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~  416 (473)
T PLN03074        348 --------S---ICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPF  416 (473)
T ss_pred             --------c---HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcc
Confidence                    0   16789999999999999999999999999999999999999999999999854332            


Q ss_pred             -Ccchh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCCCCC
Q 015596          360 -RGTTR--WLGLQILNVSCFFIT-LVAAIGSVAGVVLDLKTYKPFKTR  403 (404)
Q Consensus       360 -~~~~~--~~~~~~~~~~~~~~~-v~~~~~si~~ii~~~~~~~~f~~~  403 (404)
                       .++++  .+.+..+.+++.+++ ++|+++|+.++++++++++-|++-
T Consensus       417 ~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~  464 (473)
T PLN03074        417 FLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKC  464 (473)
T ss_pred             cCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhh
Confidence             11122  255556665555554 699999999999999997766553

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.6e-44  Score=359.73  Aligned_cols=313  Identities=29%  Similarity=0.434  Sum_probs=253.1

Q ss_pred             ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596           60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL  139 (404)
Q Consensus        60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~  139 (404)
                      ||+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.++|+++++..+  .+++..+|+|+++.++
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999987643  2333569999999999


Q ss_pred             CCCcceeeeeeeeeeEe---------------------------------------------------------------
Q 015596          140 GGKKVIFCGLIQYLNLF---------------------------------------------------------------  156 (404)
Q Consensus       140 G~~~~~l~~~~~~~~l~---------------------------------------------------------------  156 (404)
                      |+++++++++++.++++                                                               
T Consensus        79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~  158 (409)
T PF01490_consen   79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI  158 (409)
T ss_pred             cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence            99999887665443221                                                               


Q ss_pred             ---------------------e-c----CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHH
Q 015596          157 ---------------------V-T----GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIV  210 (404)
Q Consensus       157 ---------------------~-~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~  210 (404)
                                           . .    ...+.++++.++|+++|||.||.+++++++|||+|+ +.++++++...++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~~~~s~~~  237 (409)
T PF01490_consen  159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS-KFKKMKKVLSISMII  237 (409)
T ss_pred             ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc-cccccceeeeehhhh
Confidence                                 0 0    012345799999999999999999999999999982 113455999999999


Q ss_pred             HHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcccccc
Q 015596          211 TTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAE  290 (404)
Q Consensus       211 ~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~  290 (404)
                      ++++|+++|+.||++||+++++|++.|++.  .++...++++++.++++.+||++.+|.++.+++.+.++.+..+...+ 
T Consensus       238 ~~~~y~~~g~~gy~~fg~~~~~~il~n~~~--~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~-  314 (409)
T PF01490_consen  238 CFIIYLLFGIFGYLAFGDSVQGNILLNLPN--DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK-  314 (409)
T ss_pred             hhHHhhhhhhcccceeeeeecchhhhcCCC--cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc-
Confidence            999999999999999999999999999973  34678899999999999999999999999999988542000000000 


Q ss_pred             ccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHHH---
Q 015596          291 YEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLG---  367 (404)
Q Consensus       291 ~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~---  367 (404)
                              ..++.++.|+..|+.++++++++|+.+|+++++++++|++++.+++|++|+++|++.+++++++.+++.   
T Consensus       315 --------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~  386 (409)
T PF01490_consen  315 --------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILS  386 (409)
T ss_pred             --------cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhh
Confidence                    011123778999999999999999999999999999999999999999999999999887765444332   


Q ss_pred             --HHHHHHHHHHHHHHHHHHH
Q 015596          368 --LQILNVSCFFITLVAAIGS  386 (404)
Q Consensus       368 --~~~~~~~~~~~~v~~~~~s  386 (404)
                        .+.+.+++++..+.+++++
T Consensus       387 ~~~~~~~~~g~~~~~~~~~~~  407 (409)
T PF01490_consen  387 ILNWIIIVFGVVLMVFGTYQS  407 (409)
T ss_pred             ccceEEEEEeeehhHHhHHHH
Confidence              2333344444444554443

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-36  Score=296.85  Aligned_cols=309  Identities=19%  Similarity=0.343  Sum_probs=252.3

Q ss_pred             ccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHc
Q 015596           60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL  139 (404)
Q Consensus        60 r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~  139 (404)
                      ++.|.+++++|+.|+++|+|++++|+||++.|++.|+++++++++++.++.+++.+|...    .+++  +|+++++.++
T Consensus         4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~----~~~~--ty~~l~~~~~   77 (411)
T KOG1305|consen    4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK----SGER--TYSSLGDLIF   77 (411)
T ss_pred             CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh----cCCC--CHHHHHHHHc
Confidence            345789999999999999999999999999999999999999999999999999999984    4444  9999999999


Q ss_pred             CCCcceeeeee----------eeee----------------------------Ee-------------------------
Q 015596          140 GGKKVIFCGLI----------QYLN----------------------------LF-------------------------  156 (404)
Q Consensus       140 G~~~~~l~~~~----------~~~~----------------------------l~-------------------------  156 (404)
                      |+.++....+.          .++.                            +.                         
T Consensus        78 g~~g~~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~  157 (411)
T KOG1305|consen   78 GKLGKVDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL  157 (411)
T ss_pred             CCCceeeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99986433211          0000                            00                         


Q ss_pred             ----------------ec-------------CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHH
Q 015596          157 ----------------VT-------------GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFS  207 (404)
Q Consensus       157 ----------------~~-------------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a  207 (404)
                                      ..             .....++.+.++++++|||.||.|..++++|||+|  +.++++++...+
T Consensus       158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~  235 (411)
T KOG1305|consen  158 SLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIA  235 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHH
Confidence                            00             01112578999999999999999999999999998  448899999999


Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCCh----HHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596          208 IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY----WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK  283 (404)
Q Consensus       208 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~  283 (404)
                      ...++++|..+|.+||+.|||++.+|++.+++.....    +....++..+.++++..+|+..+|+|..+++.+....|+
T Consensus       236 ~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~  315 (411)
T KOG1305|consen  236 IILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG  315 (411)
T ss_pred             HHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC
Confidence            9999999999999999999999999999998754332    235789999999999999999999999998877443333


Q ss_pred             CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcch
Q 015596          284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTT  363 (404)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~  363 (404)
                      .    ++        ..|   .++......+++.+.+.|+.+|+++.+++++||+++..++|++|+++|++..|.  .++
T Consensus       316 ~----~~--------~s~---~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~  378 (411)
T KOG1305|consen  316 L----TS--------FSG---KRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSR  378 (411)
T ss_pred             C----CC--------ccc---eehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccc
Confidence            1    00        111   556778888889999999999999999999999999999999999999998876  222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015596          364 RWLGLQILNVSCFFITLVAAIGSVAGVVLD  393 (404)
Q Consensus       364 ~~~~~~~~~~~~~~~~v~~~~~si~~ii~~  393 (404)
                      .....+...++++.+.+++++.-+.++..+
T Consensus       379 ~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  379 EPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334556677778888888877777766543

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-38  Score=291.99  Aligned_cols=332  Identities=17%  Similarity=0.241  Sum_probs=271.6

Q ss_pred             CCCCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc---ccc
Q 015596           53 DDDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQ---RNY  129 (404)
Q Consensus        53 ~~~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~---~~~  129 (404)
                      +.+++.+.+.+.|+|.+|++|++-|.=|++||+|....||+ ++..++.++.+++||..+|++|....++ +|+   ...
T Consensus       108 ~G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRd  185 (524)
T KOG4303|consen  108 DGHGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRD  185 (524)
T ss_pred             cCCCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeeh
Confidence            33466778889999999999999999999999999999998 8999999999999999999999976554 443   236


Q ss_pred             cHHHHHHHHcCCC-cceeeeeeeeeeE------------------e-----------------------------ec---
Q 015596          130 TYMDAVKANLGGK-KVIFCGLIQYLNL------------------F-----------------------------VT---  158 (404)
Q Consensus       130 ~y~~l~~~~~G~~-~~~l~~~~~~~~l------------------~-----------------------------~~---  158 (404)
                      +|.+++..++++. |...+.++|.+.+                  |                             ++   
T Consensus       186 sYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lS  265 (524)
T KOG4303|consen  186 SYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLS  265 (524)
T ss_pred             hHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHH
Confidence            9999999998776 4344444433221                  1                             00   


Q ss_pred             --------------------C-chhhh----------HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHH
Q 015596          159 --------------------G-TQKLW----------RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFS  207 (404)
Q Consensus       159 --------------------~-~~~~~----------~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a  207 (404)
                                          . .+..|          +++.++|+++|+|..|..+|.++.+|++|    .+|...+.++
T Consensus       266 f~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~Ws  341 (524)
T KOG4303|consen  266 FFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWS  341 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehH
Confidence                                0 01111          36789999999999999999999999999    8899999999


Q ss_pred             HHHHHHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccc
Q 015596          208 IIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLV  287 (404)
Q Consensus       208 ~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~  287 (404)
                      -+...++-.++|..||+.||+.+++.|++|+|.   .....++|+++++..+.|||+-.+...+.+|+-+-+..|...| 
T Consensus       342 HIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F-  417 (524)
T KOG4303|consen  342 HIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF-  417 (524)
T ss_pred             HHHHHHHHHHHHHheeeeechhhHHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-
Confidence            999999999999999999999999999999962   2446799999999999999999988999898877555555433 


Q ss_pred             cccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchhHHH
Q 015596          288 TAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLG  367 (404)
Q Consensus       288 ~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~~~~  367 (404)
                      .+.|+.+ -+++     -+.+.+|..+++.+.++|+.+|.|..+++++|++.++.++|+.|++||++++.+.........
T Consensus       418 pscys~D-g~Lk-----~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~f  491 (524)
T KOG4303|consen  418 PSCYSPD-GSLK-----EWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRF  491 (524)
T ss_pred             ceeeCCC-cchh-----hheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            2222211 1122     345678999999999999999999999999999999999999999999999876654445567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 015596          368 LQILNVSCFFITLVAAIGSVAGVVLDLKTYKPF  400 (404)
Q Consensus       368 ~~~~~~~~~~~~v~~~~~si~~ii~~~~~~~~f  400 (404)
                      ...+.+.|.++++.|.+-|-..++++++...||
T Consensus       492 D~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~  524 (524)
T KOG4303|consen  492 DQGIIIMGCSVCVSGVYFSSMELIRAINSADSD  524 (524)
T ss_pred             heeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence            778888889999999999999999999987664

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.95  E-value=4.6e-26  Score=225.80  Aligned_cols=302  Identities=18%  Similarity=0.180  Sum_probs=219.7

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN  138 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~  138 (404)
                      +.+.+..++++++.+++||+|+|++|++++..|++.+++++++.+.+++++.++++|+..+.+.    +..+|.+++++.
T Consensus         6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~~~   81 (415)
T COG0814           6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVEDY   81 (415)
T ss_pred             cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHHHH
Confidence            4455799999999999999999999999999999999999999999999999999999985432    224899999999


Q ss_pred             cCCCcceeeeeeeeeeEe--------------------------------------------------------------
Q 015596          139 LGGKKVIFCGLIQYLNLF--------------------------------------------------------------  156 (404)
Q Consensus       139 ~G~~~~~l~~~~~~~~l~--------------------------------------------------------------  156 (404)
                      +|++++++.+....+.++                                                              
T Consensus        82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~  161 (415)
T COG0814          82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK  161 (415)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            999999877654333221                                                              


Q ss_pred             ------------ec-------C-----chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596          157 ------------VT-------G-----TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT  212 (404)
Q Consensus       157 ------------~~-------~-----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~  212 (404)
                                  +.       .     .........++|+++|||+||+++++++++||++++  ++.+|+...+..+..
T Consensus       162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~--~~~~k~~~~~~~~~~  239 (415)
T COG0814         162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK--KAVRKAILIGSLIAL  239 (415)
T ss_pred             HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh--HHHHHHHHHHHHHHH
Confidence                        00       0     122235789999999999999999999999998742  359999999999999


Q ss_pred             HHHHHHHhHHHhhcCCCCchhhhcccCCCC-----------ChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccC
Q 015596          213 TFYLLCGCMGYAAFGDLAPNNLLTGFGFYN-----------PYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW  281 (404)
Q Consensus       213 ~~y~~~g~~gy~~fG~~~~~~il~~~~~~~-----------~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~  281 (404)
                      ++|+.+++++|..+|+.+.++++.+.+..+           ........+++..+++..||--+....++.+++.+.+  
T Consensus       240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--  317 (415)
T COG0814         240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--  317 (415)
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--
Confidence            999999999999999999999999985311           1113334444555555555544445555555555532  


Q ss_pred             CCCccccccccCCCCCccccccchhhHH--HHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596          282 PKSDLVTAEYEIPIPFWGVYQLNLFRLV--WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG  359 (404)
Q Consensus       282 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~  359 (404)
                      .++      +.       +++..+.+..  .....++....++...|..+.+++.+|+..+..+.++.|...+.+....+
T Consensus       318 ~~~------~~-------~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~  384 (415)
T COG0814         318 SNS------KP-------GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK  384 (415)
T ss_pred             ccC------cc-------cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence            010      00       0111122333  33445556777788889999999999999999999999999998876655


Q ss_pred             CcchhHHHHHHHHHHHHHHHHH
Q 015596          360 RGTTRWLGLQILNVSCFFITLV  381 (404)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~v~  381 (404)
                      +++.++.....+.++|++..+.
T Consensus       385 ~~~g~~~~~~~v~~~Gi~~~~~  406 (415)
T COG0814         385 VYGGNFLLLLLVLLFGILVILS  406 (415)
T ss_pred             ecCCCchhHHHHHHHHHHHHHH
Confidence            5443222333444444444433

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.85  E-value=1.8e-19  Score=177.72  Aligned_cols=268  Identities=19%  Similarity=0.240  Sum_probs=203.2

Q ss_pred             cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596           61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG  140 (404)
Q Consensus        61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G  140 (404)
                      +.+.+++++.+..+.||+|+|+||.+.+..|++++++++++...+++++..++.|...+.++     ..+|.+++++.+|
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG   76 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG   76 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence            34689999999999999999999999999999999999999999999999999999874332     4699999999999


Q ss_pred             CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596          141 GKKVIFCGLIQYLNLF----------------------------------------------------------------  156 (404)
Q Consensus       141 ~~~~~l~~~~~~~~l~----------------------------------------------------------------  156 (404)
                      |+++++..+...+.++                                                                
T Consensus        77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~  156 (394)
T PF03222_consen   77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIIS  156 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999876554322111                                                                


Q ss_pred             -----------ec-----C----chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHH
Q 015596          157 -----------VT-----G----TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYL  216 (404)
Q Consensus       157 -----------~~-----~----~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~  216 (404)
                                 .+     .    ..++-..+.++|++++||+.|.++|++.+.+++.   .|+.+|++.++..+..++|+
T Consensus       157 ~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl  233 (394)
T PF03222_consen  157 FIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYL  233 (394)
T ss_pred             HHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHH
Confidence                       00     0    1122246789999999999999999999999965   28899999999998888888


Q ss_pred             HHHhHHHh-----------hcCCCCch--hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596          217 LCGCMGYA-----------AFGDLAPN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK  283 (404)
Q Consensus       217 ~~g~~gy~-----------~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~  283 (404)
                      +.-...-.           .-|++..+  ..+.+.  .+..+...+..++..+++.+||--....++|.+++.+..  ++
T Consensus       234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~  309 (394)
T PF03222_consen  234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANV--SGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KN  309 (394)
T ss_pred             HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence            65333322           22222211  112221  123456678899999999999999998999999888732  22


Q ss_pred             CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC
Q 015596          284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR  360 (404)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~  360 (404)
                      .    +               ..|...-.+..+..+++|...|+ |-..+++.| .+..++..++|+++.+|.|++++
T Consensus       310 ~----~---------------~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  310 N----S---------------SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             c----c---------------cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            1    0               22333444455678888998885 789999999 89999999999999999876554

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=99.84  E-value=4.1e-19  Score=173.98  Aligned_cols=271  Identities=15%  Similarity=0.123  Sum_probs=204.1

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      .++++++.+++++.+..+.||+|+|++|.+.++.|+++++++++++..+..||..+++|...+.++     ..++..+++
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~   80 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK   80 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999864322     468999999


Q ss_pred             HHcCCCcceeeeeeeeeeEe------------------------------------------------------------
Q 015596          137 ANLGGKKVIFCGLIQYLNLF------------------------------------------------------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~~~~l~------------------------------------------------------------  156 (404)
                      +.+||.|+.+..++..+.++                                                            
T Consensus        81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~  160 (414)
T PRK10483         81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK  160 (414)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            99999988764332211000                                                            


Q ss_pred             --------------ec------Cc-h--hhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596          157 --------------VT------GT-Q--KLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT  212 (404)
Q Consensus       157 --------------~~------~~-~--~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~  212 (404)
                                    ++      .. .  ..| ..+.++|++++||++|.++|++.+.+++.+   ++.+|++.++..+..
T Consensus       161 i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~---~kir~~I~iGs~Ipl  237 (414)
T PRK10483        161 VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP---KTIVKCLVYGTLMAL  237 (414)
T ss_pred             HHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH---HHHHHHHHHHHHHHH
Confidence                          00      00 0  011 266899999999999999999999998642   789999999999999


Q ss_pred             HHHHHHHhHHHhh-----------cCCCCchhhhcccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhcc
Q 015596          213 TFYLLCGCMGYAA-----------FGDLAPNNLLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKK  280 (404)
Q Consensus       213 ~~y~~~g~~gy~~-----------fG~~~~~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~  280 (404)
                      ++|++.-......           -|++. +.++..+.. .+..+...+..++..+++.+||--+...++|.+.+.+.. 
T Consensus       238 v~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~-  315 (414)
T PRK10483        238 ALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF-  315 (414)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            9999744433332           23332 112222211 123455567888889999999999999999999988732 


Q ss_pred             CCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596          281 WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI  358 (404)
Q Consensus       281 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~  358 (404)
                       +++    .               ..|...-.+..+..++++...|+ |-..++..|.. ..++..++|+++.++.||+
T Consensus       316 -~~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        316 -DDS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             -CCc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence             221    0               12333344566789999999996 88899999976 6788899999999998875

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.82  E-value=1.3e-18  Score=170.25  Aligned_cols=267  Identities=16%  Similarity=0.142  Sum_probs=199.9

Q ss_pred             ccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596           62 GNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG  141 (404)
Q Consensus        62 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~  141 (404)
                      .+...+++.+..+.||+|+|++|.+.++.|+.+++++++++.....||..++.|...+.++     ..++..++++.+|+
T Consensus         9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~LG~   83 (415)
T PRK09664          9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLIGN   83 (415)
T ss_pred             cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcCh
Confidence            3678899999999999999999999999999999999999999999999999999875432     56899999999999


Q ss_pred             CcceeeeeeeeeeEe-----------------------------------------------------------------
Q 015596          142 KKVIFCGLIQYLNLF-----------------------------------------------------------------  156 (404)
Q Consensus       142 ~~~~l~~~~~~~~l~-----------------------------------------------------------------  156 (404)
                      +|+++..+..++.++                                                                 
T Consensus        84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f  163 (415)
T PRK09664         84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISF  163 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence            988765443211100                                                                 


Q ss_pred             ----------e------cCc-hh----hh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHH
Q 015596          157 ----------V------TGT-QK----LW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTF  214 (404)
Q Consensus       157 ----------~------~~~-~~----~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~  214 (404)
                                +      +.+ ..    .+ ..+.++|++++||++|.++|++.+.+++.+   ++.+|++..+..+..++
T Consensus       164 ~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~---~~~~kaIl~Gs~IpLvi  240 (415)
T PRK09664        164 VIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK---DKLIKSVVFGSLLALVI  240 (415)
T ss_pred             HHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH---HHHHHHHHHHHHHHHHH
Confidence                      0      000 00    01 266799999999999999999999998642   78888888888888888


Q ss_pred             HHH--HHhHH---------HhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCC
Q 015596          215 YLL--CGCMG---------YAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPK  283 (404)
Q Consensus       215 y~~--~g~~g---------y~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~  283 (404)
                      |.+  ..+.|         -..-|+++.+-+..-....+..+...+.+++..+++.+||--+...++|.+.+.+..  ++
T Consensus       241 Y~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~  318 (415)
T PRK09664        241 YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DN  318 (415)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence            853  23333         123444443322221111134567778889999999999999999999999988732  22


Q ss_pred             CccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596          284 SDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI  358 (404)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~  358 (404)
                      ++                   ..|...-.+..+..++++...|+ |-..++..|.. ..++..++|+++-+|.||+
T Consensus       319 ~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        319 SH-------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             cc-------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            10                   12333344566789999999997 88899999986 6799999999999999875

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.82  E-value=2.4e-18  Score=168.60  Aligned_cols=304  Identities=13%  Similarity=0.143  Sum_probs=221.4

Q ss_pred             cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596           63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK  142 (404)
Q Consensus        63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~  142 (404)
                      ..+.....+..+.||+|+|+||-..+..|.+++++++++...+++++.+.|.|.....+    ++..+|.+++++.||++
T Consensus        20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~----~~~~~i~~v~~~~lG~~   95 (443)
T PRK13629         20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS----NPSGNITETVEEHFGKT   95 (443)
T ss_pred             ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCCHHHHHHHHcChh
Confidence            45677799999999999999999999999999999999999999999999999886432    12458999999999999


Q ss_pred             cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596          143 KVIFCGLIQYLNLF------------------------------------------------------------------  156 (404)
Q Consensus       143 ~~~l~~~~~~~~l~------------------------------------------------------------------  156 (404)
                      ++.+.++..++.++                                                                  
T Consensus        96 g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l  175 (443)
T PRK13629         96 GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASL  175 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            88765432211000                                                                  


Q ss_pred             ---------------ecC-c--------h-hh-hHHHHHHHHHHHhhhhhhhHHHHHHHhcCC-----Chh--hhhhHHH
Q 015596          157 ---------------VTG-T--------Q-KL-WRSLQALGAIAFAYSFSIILLEIQDTIRSP-----PAE--YKTMKKA  203 (404)
Q Consensus       157 ---------------~~~-~--------~-~~-~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-----~~~--~~~~~~~  203 (404)
                                     ... +        . .. -..+.++|+++|||+.|+++|++...+|+.     .+|  .+|.+++
T Consensus       176 ~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri  255 (443)
T PRK13629        176 VLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI  255 (443)
T ss_pred             HHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence                           000 0        0 00 126788999999999999999999985432     013  5889999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhcCCCC-----chhh------hcccCCC-CC-----hHHHHHHHHHHHHHHHhhhhccc
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL------LTGFGFY-NP-----YWLIDIANAAIVVHLVGAYQVFC  266 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~-----~~~i------l~~~~~~-~~-----~~~~~~~~~~~~i~~~~s~pl~~  266 (404)
                      +..+..+..++|++.-+.+-..-+++.     ++|+      .+.++.. +.     .++..+..+...+++..||--+.
T Consensus       256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~  335 (443)
T PRK13629        256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY  335 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988887777666542     1121      1112110 01     33566777778889999999999


Q ss_pred             ccHHHHHHHHhhc-cC-CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHH
Q 015596          267 QPLFAFVEKWSAK-KW-PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLT  344 (404)
Q Consensus       267 ~p~~~~~e~~~~~-~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~  344 (404)
                      ..++|.+++++.+ .. ++.    +    +      .+.+..+.....++.+.+++++..-|++-.+++-+|+...+.+.
T Consensus       336 LGl~E~l~gl~~~~~~~~~~----~----~------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il  401 (443)
T PRK13629        336 LGTLEGLNGLILKFGYKGDK----T----K------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLL  401 (443)
T ss_pred             HHHHHHHHHHHHHHHhhccc----c----c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHH
Confidence            9999999998842 11 111    0    0      11124556666777889999999999999999999999999999


Q ss_pred             HHhhHHhHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596          345 VYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAG  389 (404)
Q Consensus       345 fi~P~l~yl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~si~~  389 (404)
                      |++|....+|...-++.+.+.     .+++.+++|+++..+.+++
T Consensus       402 ~l~P~y~i~kvp~l~~yr~~~-----~n~fv~~~Gl~~i~~~~~~  441 (443)
T PRK13629        402 CLLPMYAIRKAPSLAKYRGRL-----DNVFVTVIGLLTILNIVYK  441 (443)
T ss_pred             HHHHHHHHHccHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHh
Confidence            999999999976555544332     1344456666666666655

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.81  E-value=2.5e-18  Score=168.98  Aligned_cols=267  Identities=15%  Similarity=0.169  Sum_probs=203.1

Q ss_pred             cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596           63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK  142 (404)
Q Consensus        63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~  142 (404)
                      +.+.+++.+..+.||+|+|+||.+.+..|+++++++++++..+..|+.++++|+..+.+     +..++.+++++.+|++
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~~~~~~~a~~~LG~~   78 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----ADTGLGTLAKRYLGRY   78 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHhChH
Confidence            67899999999999999999999999999999999999999988888888999765322     1358999999999999


Q ss_pred             cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596          143 KVIFCGLIQYLNLF------------------------------------------------------------------  156 (404)
Q Consensus       143 ~~~l~~~~~~~~l~------------------------------------------------------------------  156 (404)
                      |+++..+...+.++                                                                  
T Consensus        79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~  158 (403)
T PRK15132         79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLV  158 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            98765443221110                                                                  


Q ss_pred             -------ec-Cchh----hhH---HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596          157 -------VT-GTQK----LWR---SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  221 (404)
Q Consensus       157 -------~~-~~~~----~~~---~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~  221 (404)
                             .+ +...    .|+   .+.++|++++||+.|.++|++.+.+++.+   ++.+|++.++..+..++|++.-..
T Consensus       159 ~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~k~i~~Gs~i~li~yl~W~~~  235 (403)
T PRK15132        159 VMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLRWVFIIGSAIPLVAYIFWQLA  235 (403)
T ss_pred             HHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00 0000    011   67999999999999999999999998642   789999999999999999977666


Q ss_pred             HHhhcCCCC-----c-----hhhhcccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCcccccc
Q 015596          222 GYAAFGDLA-----P-----NNLLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAE  290 (404)
Q Consensus       222 gy~~fG~~~-----~-----~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~  290 (404)
                      ....-+.+.     +     ++++..+.. .+..+...++.++..+++.+||--+...++|.+.+.+.++  +.    + 
T Consensus       236 ~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~----~-  308 (403)
T PRK15132        236 TLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--NT----V-  308 (403)
T ss_pred             HHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cc----c-
Confidence            665544331     1     122222211 1235667788889999999999999999999999887321  10    0 


Q ss_pred             ccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC-hHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596          291 YEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG  359 (404)
Q Consensus       291 ~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~-~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~  359 (404)
                                    ..|.....+..+.++++|...|+ |....++.|. ..+++.+++|+++.+|.|+.+
T Consensus       309 --------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~  363 (403)
T PRK15132        309 --------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN  363 (403)
T ss_pred             --------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence                          22445556677789999999996 7788888886 578999999999999988654

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.78  E-value=4.3e-18  Score=168.25  Aligned_cols=262  Identities=16%  Similarity=0.130  Sum_probs=194.7

Q ss_pred             HHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCccee
Q 015596           67 TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIF  146 (404)
Q Consensus        67 a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l  146 (404)
                      +++.++++++|+|++++|.++++.|...+++.+++.++++.++..++.|+..+.++     ..+|.+.+++++||++.++
T Consensus         2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~   76 (381)
T TIGR00837         2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNII   76 (381)
T ss_pred             ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHH
Confidence            34567899999999999999999999999999999999999999999999865432     3489999999999998776


Q ss_pred             eeeeeeeeEe----------------------------------------------------------------------
Q 015596          147 CGLIQYLNLF----------------------------------------------------------------------  156 (404)
Q Consensus       147 ~~~~~~~~l~----------------------------------------------------------------------  156 (404)
                      ++...++.++                                                                      
T Consensus        77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii  156 (381)
T TIGR00837        77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFS  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432111000                                                                      


Q ss_pred             -----ec-----Cc----hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 015596          157 -----VT-----GT----QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG  222 (404)
Q Consensus       157 -----~~-----~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g  222 (404)
                           .+     +.    ....+...+++...++|++|.+++++..++++++   |+.+|+..++..+++++|+++....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~g~~i~~~lY~l~~~~~  233 (381)
T TIGR00837       157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILIGSAIALVLYILWQLAT  233 (381)
T ss_pred             HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00     00    0122467888999999999999999999998652   8999999999999999999887776


Q ss_pred             HhhcCCCCchhhh----------cccCC-CCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCccccccc
Q 015596          223 YAAFGDLAPNNLL----------TGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEY  291 (404)
Q Consensus       223 y~~fG~~~~~~il----------~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~  291 (404)
                      ....+.+.-.+..          ..+.. ....|...++.++..++++.|+.......++.+.+.+.+.  +    ++  
T Consensus       234 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~----~~--  305 (381)
T TIGR00837       234 MGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D----SK--  305 (381)
T ss_pred             hCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c----cc--
Confidence            6665544211111          11100 1234556788889999999999999888898887776321  1    00  


Q ss_pred             cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChH-HHHHHHhhhhhhhHHHHhhHHhHHhhccC
Q 015596          292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFN-DVVGILGAMGFWPLTVYFPIEMYKAQKKI  358 (404)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~-~i~~liGa~~~~~l~fi~P~l~yl~~~~~  358 (404)
                                   ..|.....+..+...++|.+.|+.. ..++..| ++..++.+++|++++++.||+
T Consensus       306 -------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       306 -------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             -------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence                         1133445555577888899999766 8999999 888999999999999998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00814 stp serine transporter

Probab=99.73  E-value=1.6e-16  Score=156.51  Aligned_cols=285  Identities=11%  Similarity=0.082  Sum_probs=208.6

Q ss_pred             cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCC
Q 015596           63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK  142 (404)
Q Consensus        63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~  142 (404)
                      .++...+.+..+++|+|+|++|...++.||+..++..++...+++++.+++.|.....+    .+..++.|++++.|||+
T Consensus         4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~----~p~~~i~~~~~~~fGk~   79 (397)
T TIGR00814         4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK----NPCEDITEVVEEHFGKN   79 (397)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHcCHH
Confidence            46788999999999999999999999999999999999999999999999999864322    11358999999999999


Q ss_pred             cceeeeeeeeeeEe------------------------------------------------------------------
Q 015596          143 KVIFCGLIQYLNLF------------------------------------------------------------------  156 (404)
Q Consensus       143 ~~~l~~~~~~~~l~------------------------------------------------------------------  156 (404)
                      ++.+.++...+.++                                                                  
T Consensus        80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l  159 (397)
T TIGR00814        80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL  159 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            87655443221100                                                                  


Q ss_pred             ----------e-------cC-c-hhhhHHHHHHHHHHHhhhhhhhHHHHHHHh----cCCChhhhhhHHHHHHHHHHHHH
Q 015596          157 ----------V-------TG-T-QKLWRSLQALGAIAFAYSFSIILLEIQDTI----RSPPAEYKTMKKATLFSIIVTTT  213 (404)
Q Consensus       157 ----------~-------~~-~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m----~~p~~~~~~~~~~~~~a~~~~~~  213 (404)
                                .       .+ . ...-++..+++..++||.+|.+++++....    ++|..+.+|.+|+...+..+.++
T Consensus       160 ~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~  239 (397)
T TIGR00814       160 VLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVA  239 (397)
T ss_pred             HHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence                      0       00 0 112247799999999999999999998333    32322358899999999999999


Q ss_pred             HHHHHHhHHHhhcCCCCc-----hhh--hcccC-CCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhccCCCCc
Q 015596          214 FYLLCGCMGYAAFGDLAP-----NNL--LTGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSD  285 (404)
Q Consensus       214 ~y~~~g~~gy~~fG~~~~-----~~i--l~~~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~  285 (404)
                      +|++.-+.+....+++.-     +|+  +..+. ..+..+...+..+...+++..|+--+...++|.+++++.+..+.  
T Consensus       240 ~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~--  317 (397)
T TIGR00814       240 TVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM--  317 (397)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence            999888888887776531     121  11110 01223555677778888999999999999999999988322111  


Q ss_pred             cccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCCcchh
Q 015596          286 LVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTR  364 (404)
Q Consensus       286 ~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~~~~~  364 (404)
                         ++.  +.      +.+........++.+.+++++..-|++-.+++-+|+...+.+.|++|...-+|...-++.+.+
T Consensus       318 ---~~~--~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~  385 (397)
T TIGR00814       318 ---KGK--KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR  385 (397)
T ss_pred             ---ccc--cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC
Confidence               000  01      111445556667778899999999999999999999999999999999999997655555443

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.35  E-value=2.1e-10  Score=115.59  Aligned_cols=158  Identities=13%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      ++|+.+.++++...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|.....+...|  .+.|.   ++
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG--~y~y~---~~   77 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGG--MGGYA---EY   77 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCc--hHHHH---HH
Confidence            46678899999999999999999999999888887 57888888998888888888887765543333  23444   47


Q ss_pred             HcCCCcceeeeeee-----------------ee---------------------------eEe-----------------
Q 015596          138 NLGGKKVIFCGLIQ-----------------YL---------------------------NLF-----------------  156 (404)
Q Consensus       138 ~~G~~~~~l~~~~~-----------------~~---------------------------~l~-----------------  156 (404)
                      .+|+...++++...                 +.                           |+.                 
T Consensus        78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l  157 (438)
T PRK10655         78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI  157 (438)
T ss_pred             HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            78876543322110                 00                           000                 


Q ss_pred             -------------ecC--c-----hh----hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596          157 -------------VTG--T-----QK----LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT  212 (404)
Q Consensus       157 -------------~~~--~-----~~----~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~  212 (404)
                                   .+.  .     ..    ..++..++....|+|.|...+..+-.|+|+|+   |+.+|++..+..+++
T Consensus       158 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~  234 (438)
T PRK10655        158 IPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAA  234 (438)
T ss_pred             HHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHH
Confidence                         000  0     00    12355667788999999999999999999994   789999999999999


Q ss_pred             HHHHHHHhHHHh
Q 015596          213 TFYLLCGCMGYA  224 (404)
Q Consensus       213 ~~y~~~g~~gy~  224 (404)
                      ++|++.......
T Consensus       235 ~~Y~l~~~~~~~  246 (438)
T PRK10655        235 VIYIVSTNVIAG  246 (438)
T ss_pred             HHHHHHHHHHHh
Confidence            999987665443

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.31  E-value=6.4e-12  Score=123.82  Aligned_cols=279  Identities=17%  Similarity=0.208  Sum_probs=177.6

Q ss_pred             CCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596           56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVA-GPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD  133 (404)
Q Consensus        56 ~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~-g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~  133 (404)
                      .+.+|+.+.+.++..+++++||+|++..|.. .+++|-++ +++++++.++++..+.....|.....+...|  .+.|-+
T Consensus         8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg--d~ayi~   85 (479)
T KOG1287|consen    8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG--DYAYIS   85 (479)
T ss_pred             ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc--chhhHH
Confidence            4457788999999999999999999999998 66776665 8888999999999999999999887665444  245554


Q ss_pred             HHHHHcCCCcceeee------------------eeee-----------------------------eeEe----------
Q 015596          134 AVKANLGGKKVIFCG------------------LIQY-----------------------------LNLF----------  156 (404)
Q Consensus       134 l~~~~~G~~~~~l~~------------------~~~~-----------------------------~~l~----------  156 (404)
                         ++||+....+..                  +..|                             +|++          
T Consensus        86 ---~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~  162 (479)
T KOG1287|consen   86 ---EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQI  162 (479)
T ss_pred             ---HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence               567765432110                  0011                             0111          


Q ss_pred             -------------------------ecC---c------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHH
Q 015596          157 -------------------------VTG---T------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKK  202 (404)
Q Consensus       157 -------------------------~~~---~------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~  202 (404)
                                               .++   +      .+.-++..++-...|||.++.++..+-.|+|||.   |++++
T Consensus       163 ~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~  239 (479)
T KOG1287|consen  163 VFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPR  239 (479)
T ss_pred             HHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchH
Confidence                                     010   1      1122477899999999999999999999999995   89999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcc------cCCC-CChHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 015596          203 ATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG------FGFY-NPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK  275 (404)
Q Consensus       203 ~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~------~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~  275 (404)
                      +..+|+.+++++|+++.+.++.+--   ++.++.+      |... -+.+. ..+-++..++.+.+.--.++.....+..
T Consensus       240 Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~  315 (479)
T KOG1287|consen  240 AILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYA  315 (479)
T ss_pred             HHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999998877553   2333222      1000 01121 2333444444444433322222222222


Q ss_pred             Hhhc-cCCCCccccccccC-CCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHHhhHHhHH
Q 015596          276 WSAK-KWPKSDLVTAEYEI-PIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYK  353 (404)
Q Consensus       276 ~~~~-~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi~P~l~yl  353 (404)
                      ..++ +-|+.  .+..+.. ..|        +.    ..++.++..++..+..|+..+++.++-.-.....+.+=+++++
T Consensus       316 ~areG~LP~~--~s~i~~~~~TP--------~~----allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~l  381 (479)
T KOG1287|consen  316 GAREGHLPAF--FSMISVRRFTP--------RP----ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWL  381 (479)
T ss_pred             HHHccCccHH--HHhhcCCCCCC--------hH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 11321  1110000 122        11    2223334444455567999999999988888888999999999


Q ss_pred             hhccCCC
Q 015596          354 AQKKIGR  360 (404)
Q Consensus       354 ~~~~~~~  360 (404)
                      |.++++.
T Consensus       382 R~k~p~~  388 (479)
T KOG1287|consen  382 RWKHPPL  388 (479)
T ss_pred             HhhCCCC
Confidence            9887763

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.28  E-value=1.4e-09  Score=109.74  Aligned_cols=161  Identities=13%  Similarity=0.162  Sum_probs=113.7

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      +++|+.+.++++...+++++|+|++.+|...++.|. ..+..+++.++........+.|.....+...|  .+.|   ++
T Consensus         5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG--~y~~---~~   78 (445)
T PRK10644          5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG--SYAY---AR   78 (445)
T ss_pred             ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--hhHH---HH
Confidence            456788999999999999999999999998888774 35566777777777777777887766554333  2345   56


Q ss_pred             HHcCCCcceeeeeeee--------------------------------------------eeEe----------------
Q 015596          137 ANLGGKKVIFCGLIQY--------------------------------------------LNLF----------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~~--------------------------------------------~~l~----------------  156 (404)
                      +.+|+...++++...+                                            +|++                
T Consensus        79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~  158 (445)
T PRK10644         79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA  158 (445)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            7778764432211100                                            0000                


Q ss_pred             --------------ecCc--h---------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596          157 --------------VTGT--Q---------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT  211 (404)
Q Consensus       157 --------------~~~~--~---------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~  211 (404)
                                    .+..  .         ....+..++....|+|.|......+-+|+|+|+   |+.+|++..++.++
T Consensus       159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~  235 (445)
T PRK10644        159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIA  235 (445)
T ss_pred             HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHH
Confidence                          0000  0         011244567788999999999999999999994   78999999999999


Q ss_pred             HHHHHHHHhHHHhhc
Q 015596          212 TTFYLLCGCMGYAAF  226 (404)
Q Consensus       212 ~~~y~~~g~~gy~~f  226 (404)
                      +++|+++.+.....-
T Consensus       236 ~v~Y~l~~~~~~~~~  250 (445)
T PRK10644        236 AVCYVLSSTAIMGMI  250 (445)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999998887754433

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.23  E-value=2.6e-09  Score=107.53  Aligned_cols=160  Identities=13%  Similarity=0.174  Sum_probs=115.1

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      +++|+.+.++.+...++++||+|++.+|...++.|-. .+..+++.++........+.|.....+...|  .++|.+   
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG--~y~y~~---   75 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGG--PIAYAG---   75 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--hhHHHH---
Confidence            3577889999999999999999999999999988864 6777788888877777888888766554333  245543   


Q ss_pred             HHcCCCcceeeeeee-----------------e---------------------------eeEe----------------
Q 015596          137 ANLGGKKVIFCGLIQ-----------------Y---------------------------LNLF----------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~-----------------~---------------------------~~l~----------------  156 (404)
                      + +|+...++++...                 +                           +|+.                
T Consensus        76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~  154 (435)
T PRK10435         76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV  154 (435)
T ss_pred             H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3 3443322111100                 0                           0000                


Q ss_pred             --------------ecC-----------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596          157 --------------VTG-----------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT  211 (404)
Q Consensus       157 --------------~~~-----------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~  211 (404)
                                    .+.           .....++..++....|+|.+...+...-.|+|||+   |+.+|++..++.++
T Consensus       155 li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv  231 (435)
T PRK10435        155 LIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLA  231 (435)
T ss_pred             HHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHH
Confidence                          000           01123567788899999999999999999999994   78999999999999


Q ss_pred             HHHHHHHHhHHHhhc
Q 015596          212 TTFYLLCGCMGYAAF  226 (404)
Q Consensus       212 ~~~y~~~g~~gy~~f  226 (404)
                      +++|++..+......
T Consensus       232 ~ilYil~~~~~~~~~  246 (435)
T PRK10435        232 GIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999998887655443

>PRK10249 phenylalanine transporter; Provisional

Probab=99.17  E-value=5.9e-09  Score=105.66  Aligned_cols=280  Identities=16%  Similarity=0.135  Sum_probs=164.0

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..+..+||+|++..|.. .++.|- ..++.+++.+++.......+.|.....+. .|    ..-..+
T Consensus        18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y~   91 (458)
T PRK10249         18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHFA   91 (458)
T ss_pred             hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence            466788899999999999999999998775 666676 47888899999999999999998876554 33    333456


Q ss_pred             HHHcCCCcceeeeeeee-----------------e-----------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQY-----------------L-----------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~-----------------~-----------------------~l~-------------------  156 (404)
                      ++.+|+...++++...+                 +                       |++                   
T Consensus        92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~  171 (458)
T PRK10249         92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLA  171 (458)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            67778764433221110                 0                       000                   


Q ss_pred             -------------e-c--C---chh----------hh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596          157 -------------V-T--G---TQK----------LW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF  206 (404)
Q Consensus       157 -------------~-~--~---~~~----------~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~  206 (404)
                                   . .  .   ...          .| ++..++....|+|.+...+...-.|+|+|+   |+.+|++..
T Consensus       172 i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~  248 (458)
T PRK10249        172 IIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQ  248 (458)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHH
Confidence                         0 0  0   001          12 357888999999999999999999999984   789999999


Q ss_pred             HHHHHHHHHHHHHhHHHhhcCCCCc----hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cC
Q 015596          207 SIIVTTTFYLLCGCMGYAAFGDLAP----NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KW  281 (404)
Q Consensus       207 a~~~~~~~y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~  281 (404)
                      ++...+++|++.........++...    +.+..-+......+...+.++..+++.+.+.--.....-+.+...-.+ ..
T Consensus       249 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~l  328 (458)
T PRK10249        249 VVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNA  328 (458)
T ss_pred             HHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999998765554444332210    111111100011233344444544554444432222222222222211 11


Q ss_pred             CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596          282 PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK  357 (404)
Q Consensus       282 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~  357 (404)
                      |+  +..+.++.+.|        ...+.+..++.++..++....|  .++.++++.+.  ...+.|++|++.+++.++
T Consensus       329 P~--~~~kv~~~~~P--------~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        329 PK--FLTRVSRRGVP--------INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA--TLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             CH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            21  11111112334        3344444444433333333333  35555555443  467899999999998763

>PRK15049 L-asparagine permease; Provisional

Probab=99.16  E-value=1e-08  Score=104.87  Aligned_cols=279  Identities=15%  Similarity=0.140  Sum_probs=163.7

Q ss_pred             ccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           58 LKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      .+|+.+.++..+..+..+||+|++..|. ++++.|- .+++.+++.+++.......+.|.....+. .|    ..-.-++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y~~   99 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSYAR   99 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHH
Confidence            5677889999999999999999998877 5788886 46888888999999888889998876554 33    2233445


Q ss_pred             HHcCCCcceeeeeeee-----------------e-------------------------eEe------------------
Q 015596          137 ANLGGKKVIFCGLIQY-----------------L-------------------------NLF------------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~~-----------------~-------------------------~l~------------------  156 (404)
                      +.+|++..++++...+                 .                         |++                  
T Consensus       100 ~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~  179 (499)
T PRK15049        100 EFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL  179 (499)
T ss_pred             HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777764433221100                 0                         000                  


Q ss_pred             -------------e--cCc-------------hh-----hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596          157 -------------V--TGT-------------QK-----LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA  203 (404)
Q Consensus       157 -------------~--~~~-------------~~-----~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~  203 (404)
                                   .  ...             ..     ....+.++....|+|.+...+...-.|+|+|+   |+.+|+
T Consensus       180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrA  256 (499)
T PRK15049        180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKA  256 (499)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHH
Confidence                         0  000             00     11244556678999999999999999999994   789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhcCCCCc----hhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAAFGDLAP----NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK  279 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~  279 (404)
                      +..++..+.++|+..........+.+..    +.+..-+....-.+...+.++..+++.+.+.--......+.+...-.+
T Consensus       257 i~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ard  336 (499)
T PRK15049        257 INSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMG  336 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999876655544332211    111111100011233345555555555555433333333333333211


Q ss_pred             -cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhc
Q 015596          280 -KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQK  356 (404)
Q Consensus       280 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~  356 (404)
                       ..|+  +..+-.+.+.|        ...++...++.++..++....|  .++.++++.+  .+..+.|+++.+.+++.|
T Consensus       337 g~lP~--~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R  404 (499)
T PRK15049        337 GSAPS--FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLR  404 (499)
T ss_pred             CCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence             1131  12221122344        3333333333333222332333  2566666665  456889999999998876


Q ss_pred             c
Q 015596          357 K  357 (404)
Q Consensus       357 ~  357 (404)
                      |
T Consensus       405 ~  405 (499)
T PRK15049        405 K  405 (499)
T ss_pred             H
Confidence            4

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.14  E-value=1.3e-08  Score=103.51  Aligned_cols=276  Identities=14%  Similarity=0.123  Sum_probs=160.3

Q ss_pred             ccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596           60 RTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN  138 (404)
Q Consensus        60 r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~  138 (404)
                      |+.+.++.+...++++||+|++.+|.. .+..|....++.+++.++........+.|.....++..|- .+.|   +++.
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG-~y~y---~~~~   76 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG-VYSY---AKAG   76 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhh---HHhH
Confidence            456789999999999999999999987 4555644456678888888888888888887665543321 3455   5577


Q ss_pred             cCCCcceeeeeeee---------------------e-------------------------eEe----------------
Q 015596          139 LGGKKVIFCGLIQY---------------------L-------------------------NLF----------------  156 (404)
Q Consensus       139 ~G~~~~~l~~~~~~---------------------~-------------------------~l~----------------  156 (404)
                      ||+...++++...+                     .                         ++.                
T Consensus        77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~k  156 (468)
T TIGR03810        77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAK  156 (468)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            78764332211000                     0                         000                


Q ss_pred             --------------e-----cCc-----------hh-hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596          157 --------------V-----TGT-----------QK-LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL  205 (404)
Q Consensus       157 --------------~-----~~~-----------~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~  205 (404)
                                    .     +..           .. ...+..++....|+|.+......+-.|.|++    |+.+|++.
T Consensus       157 i~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~  232 (468)
T TIGR03810       157 LVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATV  232 (468)
T ss_pred             HHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHH
Confidence                          0     000           00 1124467778999999999999999999875    89999999


Q ss_pred             HHHHHHHHHHHHHHhHHHhhcCCCC----ch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHh
Q 015596          206 FSIIVTTTFYLLCGCMGYAAFGDLA----PN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWS  277 (404)
Q Consensus       206 ~a~~~~~~~y~~~g~~gy~~fG~~~----~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~  277 (404)
                      .++..++++|+++.+..+...+++.    ++    .+..+.   -..|...+.+++.+++.+.+.--.....-+.+...-
T Consensus       233 ~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a  309 (468)
T TIGR03810       233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA  309 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998877665443221    11    111111   123444566666666666555443333333332222


Q ss_pred             hc-cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhh-cCChHHHHHHHhhhhhhhHHHHhhHHhHHhh
Q 015596          278 AK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML-LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQ  355 (404)
Q Consensus       278 ~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~-vp~~~~i~~liGa~~~~~l~fi~P~l~yl~~  355 (404)
                      ++ ..|+  +..+.++.+.|        ..-+.....+..+..++... -+.++.+.++.+.  ...+.|+++++.+++.
T Consensus       310 rdg~lP~--~f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l  377 (468)
T TIGR03810       310 KDKLMPK--YFGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKL  377 (468)
T ss_pred             hCCCccH--HHHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            11 1232  12221122344        23333333332222222111 1346666665543  4578889999988887


Q ss_pred             ccC
Q 015596          356 KKI  358 (404)
Q Consensus       356 ~~~  358 (404)
                      +++
T Consensus       378 ~~~  380 (468)
T TIGR03810       378 SWR  380 (468)
T ss_pred             HHh
Confidence            543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11021 putative transporter; Provisional

Probab=99.14  E-value=1.8e-08  Score=100.60  Aligned_cols=150  Identities=15%  Similarity=0.219  Sum_probs=110.6

Q ss_pred             cHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596           63 NFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG  141 (404)
Q Consensus        63 s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~  141 (404)
                      +.|+++...++++||+|++.+|.. .+..|- ..++.+++.++........+.|.....+...|  .+.   -+++.+|+
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG--~y~---y~~~~~G~   75 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGG--PAH---FVGMAFGP   75 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHH---hHHHHhCc
Confidence            578999999999999999999886 555664 57888888888888888889998877664333  233   34467787


Q ss_pred             Ccceeeeeeeee------------------------------------------eEe-----------------------
Q 015596          142 KKVIFCGLIQYL------------------------------------------NLF-----------------------  156 (404)
Q Consensus       142 ~~~~l~~~~~~~------------------------------------------~l~-----------------------  156 (404)
                      ...++++...++                                          |+.                       
T Consensus        76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~  155 (410)
T PRK11021         76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI  155 (410)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            754332211100                                          000                       


Q ss_pred             ---ec--C---------chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596          157 ---VT--G---------TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  221 (404)
Q Consensus       157 ---~~--~---------~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~  221 (404)
                         ..  .         .....++..++....|+|.+...+...-+|+|||+   |+++|++..++.+++++|++....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        156 WWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence               00  0         01122467888999999999999999999999995   789999999999999999987755

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.11  E-value=2.5e-08  Score=101.48  Aligned_cols=160  Identities=16%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLG-WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G-~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      +|+.+.+++++..+++++|+|++.+|...++.| -...++.+++.++........+.|.....+.+.|- .++|.   ++
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG-~y~y~---~~   81 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG-IYAYA---RE   81 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-hhhhH---Hh
Confidence            567899999999999999999999999976555 33346677888888888888888888765541332 23444   57


Q ss_pred             HcCCCcceeeeeeeee----------------------------------------------eEe---------------
Q 015596          138 NLGGKKVIFCGLIQYL----------------------------------------------NLF---------------  156 (404)
Q Consensus       138 ~~G~~~~~l~~~~~~~----------------------------------------------~l~---------------  156 (404)
                      .+|+...++++..+++                                              ++.               
T Consensus        82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~  161 (473)
T TIGR00905        82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIA  161 (473)
T ss_pred             HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            7888754432211100                                              000               


Q ss_pred             -----------------ec-------Cch------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596          157 -----------------VT-------GTQ------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF  206 (404)
Q Consensus       157 -----------------~~-------~~~------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~  206 (404)
                                       .+       +..      ....+..++....|+|.+......+-.|+|| +   |+.+|++..
T Consensus       162 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~  237 (473)
T TIGR00905       162 KLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVL  237 (473)
T ss_pred             HHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHH
Confidence                             00       000      1123566778899999999999999999999 3   899999999


Q ss_pred             HHHHHHHHHHHHHhHHHhhc
Q 015596          207 SIIVTTTFYLLCGCMGYAAF  226 (404)
Q Consensus       207 a~~~~~~~y~~~g~~gy~~f  226 (404)
                      ++.+++++|++.........
T Consensus       238 ~~~i~~~~Yil~~~~~~~~~  257 (473)
T TIGR00905       238 GTLGALVIYILITLLSLGVL  257 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhCc
Confidence            99999999998877644433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.11  E-value=2.1e-08  Score=101.96  Aligned_cols=163  Identities=18%  Similarity=0.140  Sum_probs=116.5

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..++++||+|++..|.. .+..|-...++.+++.+++.......+.|.....+...|     +-.-+
T Consensus        11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG-----~y~y~   85 (471)
T PRK11387         11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGA-----FHVYA   85 (471)
T ss_pred             hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----HHHHH
Confidence            357888999999999999999999988776 677786556778888888888888888888876654322     22345


Q ss_pred             HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQYL----------------------------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~-------------------  156 (404)
                      ++.+|+...++++...++                                        |++                   
T Consensus        86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~  165 (471)
T PRK11387         86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVT  165 (471)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            567777644322111100                                        000                   


Q ss_pred             -----------e-------cCc---------------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596          157 -----------V-------TGT---------------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA  203 (404)
Q Consensus       157 -----------~-------~~~---------------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~  203 (404)
                                 .       +..               ....++..++....|+|.+...+...-.|+|||+   |+++++
T Consensus       166 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrA  242 (471)
T PRK11387        166 ILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVA  242 (471)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHH
Confidence                       0       000               0112366777788999999999999999999994   789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhcC
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAAFG  227 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~fG  227 (404)
                      +..++..++++|++..+......+
T Consensus       243 i~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        243 IRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHheecC
Confidence            999999999999988765544443

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.09  E-value=2.5e-08  Score=108.43  Aligned_cols=160  Identities=19%  Similarity=0.164  Sum_probs=108.4

Q ss_pred             ccccccHHHHHHHH-HhhhhhHhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           58 LKRTGNFWTTSSHI-ITAVIGSGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        58 ~~r~~s~~~a~~~l-~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.++.++++.++.- +.+|+|+|++- +++...++|...+++.+++.++++..+..-+.+......++.|-   .|. ..
T Consensus        74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yi  149 (953)
T TIGR00930        74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LI  149 (953)
T ss_pred             CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HH
Confidence            34566677777777 99999999985 67889999988889999999999999999898887652223332   222 22


Q ss_pred             HHHcCCCcceeeeee--------------------------------------------------eeeeEe---------
Q 015596          136 KANLGGKKVIFCGLI--------------------------------------------------QYLNLF---------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~--------------------------------------------------~~~~l~---------  156 (404)
                      .++||+.....++++                                                  ..++++         
T Consensus       150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q  229 (953)
T TIGR00930       150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ  229 (953)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344444321100000                                                  000000         


Q ss_pred             -------------------ecCc----------------h-------hhhH-HHHHHHHHHHhhhhhhhHHHHHHHhcCC
Q 015596          157 -------------------VTGT----------------Q-------KLWR-SLQALGAIAFAYSFSIILLEIQDTIRSP  193 (404)
Q Consensus       157 -------------------~~~~----------------~-------~~~~-~~~~~~~~~faf~~~~~i~~i~~~m~~p  193 (404)
                                         ....                .       .... ++..++++.+||.|......+-.|+|+|
T Consensus       230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP  309 (953)
T TIGR00930       230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP  309 (953)
T ss_pred             HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence                               0000                0       0111 5667777888999999999999999999


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 015596          194 PAEYKTMKKATLFSIIVTTTFYLLCGCMGYA  224 (404)
Q Consensus       194 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~  224 (404)
                      .   |..++++..++.+++++|+++.+....
T Consensus       310 ~---r~IPratl~ai~i~~vlYllv~~~~~~  337 (953)
T TIGR00930       310 Q---KAIPKGTLLAILTTTVVYLGSVVLFGA  337 (953)
T ss_pred             h---hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4   789999999999999999999764333

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.08  E-value=3.9e-08  Score=100.02  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=114.0

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..++++||+|++-.|. ++++.|. ..+..+++.+++.......+.|.....++     ...+.+.+
T Consensus        17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-----~~~~~~ya   90 (469)
T PRK11049         17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-----YKSFSDFA   90 (469)
T ss_pred             hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHH
Confidence            36778899999999999999999999766 6888887 46777778888777777777776543221     12455678


Q ss_pred             HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQYL----------------------------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~-------------------  156 (404)
                      ++.+|+...++++..+++                                        |++                   
T Consensus        91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~  170 (469)
T PRK11049         91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVA  170 (469)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            888888754433221110                                        000                   


Q ss_pred             -----------e-----cCch----------------hhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596          157 -----------V-----TGTQ----------------KLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA  203 (404)
Q Consensus       157 -----------~-----~~~~----------------~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~  203 (404)
                                 .     ++..                +.| ++..++....|+|.|...+...-+|+|+|+   |+++|+
T Consensus       171 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPra  247 (469)
T PRK11049        171 IVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRA  247 (469)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHH
Confidence                       0     0000                011 377889999999999999999999999984   789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhh
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAA  225 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~  225 (404)
                      +..+...+.++|++.....+..
T Consensus       248 i~~~~~~~~~~y~l~~~~~~~~  269 (469)
T PRK11049        248 INSIPIRIIMFYVFALIVIMSV  269 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHeee
Confidence            9877777888888777665443

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.06  E-value=3.2e-08  Score=100.20  Aligned_cols=162  Identities=20%  Similarity=0.214  Sum_probs=118.3

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLA-WAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..++++||+|++.+| .+.+..|- .+++.+++.+++.......+.|.....+.. |    ..-+.+
T Consensus         9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~-G----g~~~~~   82 (452)
T TIGR01773         9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT-G----SFSTYA   82 (452)
T ss_pred             hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C----CHHHHH
Confidence            4678889999999999999999999999 55888886 477888888898888888888887665532 2    334556


Q ss_pred             HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQYL----------------------------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~-------------------  156 (404)
                      ++.+|+...++++...++                                        |++                   
T Consensus        83 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~  162 (452)
T TIGR01773        83 DDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIA  162 (452)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            688888755443221110                                        000                   


Q ss_pred             ------------e---cC-c--------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596          157 ------------V---TG-T--------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL  205 (404)
Q Consensus       157 ------------~---~~-~--------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~  205 (404)
                                  .   .. .              .+.+ ++..++....|+|.+...+..+-.|+|||+   |+.+|++.
T Consensus       163 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~  239 (452)
T TIGR01773       163 IIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATN  239 (452)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHH
Confidence                        0   00 0              0111 377888899999999999999999999994   78999998


Q ss_pred             HHHHHHHHHHHHHHhHHHhhcC
Q 015596          206 FSIIVTTTFYLLCGCMGYAAFG  227 (404)
Q Consensus       206 ~a~~~~~~~y~~~g~~gy~~fG  227 (404)
                      .++....++|++.........+
T Consensus       240 ~~~~~~~~~y~l~~~~~~~~~p  261 (452)
T TIGR01773       240 SVIWRIIVFYLGSIFIVVALLP  261 (452)
T ss_pred             HHHHHHHHHHHHHHHHHeeEeC
Confidence            8888889999986554444333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10836 lysine transporter; Provisional

Probab=99.05  E-value=6.2e-08  Score=99.05  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=113.0

Q ss_pred             CCCccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD  133 (404)
Q Consensus        55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~  133 (404)
                      +++.+|+.+.++..+..++++||+|++.+|. +.++.|-...++.+++.+++.......+.|.....+...|.  +.|.+
T Consensus        10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~--y~y~~   87 (489)
T PRK10836         10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSF--ATYGQ   87 (489)
T ss_pred             cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHH
Confidence            3456788899999999999999999999997 57788875578889999999999999999988776643332  22222


Q ss_pred             HHHHHcCCCcceeeeee----------------------------------------eeeeEe-----------------
Q 015596          134 AVKANLGGKKVIFCGLI----------------------------------------QYLNLF-----------------  156 (404)
Q Consensus       134 l~~~~~G~~~~~l~~~~----------------------------------------~~~~l~-----------------  156 (404)
                         +.+|+...++++..                                        ..+|++                 
T Consensus        88 ---~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki  164 (489)
T PRK10836         88 ---NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV  164 (489)
T ss_pred             ---HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence               33333221111000                                        000100                 


Q ss_pred             -----------------ecCc-----h-----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596          157 -----------------VTGT-----Q-----------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA  203 (404)
Q Consensus       157 -----------------~~~~-----~-----------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~  203 (404)
                                       ....     .           ....+..+.....|+|.+...+..+-.|+|||+   |+.+|+
T Consensus       165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrA  241 (489)
T PRK10836        165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRA  241 (489)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHH
Confidence                             0000     0           011233445556799999999999999999994   789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhc
Q 015596          204 TLFSIIVTTTFYLLCGCMGYAAF  226 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~gy~~f  226 (404)
                      +..++..++++|++.........
T Consensus       242 i~~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        242 VRQVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHheec
Confidence            99999999999998876654444

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.04  E-value=3.4e-08  Score=100.06  Aligned_cols=282  Identities=13%  Similarity=0.118  Sum_probs=160.2

Q ss_pred             CCCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD  133 (404)
Q Consensus        55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~  133 (404)
                      +++.+|+.+.++..+..++++||+|++..|.. .++.|- ..++.+++.+++.......+.|.....+. .|    .+-+
T Consensus         7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~   80 (456)
T PRK10238          7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSH   80 (456)
T ss_pred             chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHH
Confidence            34568889999999999999999999988876 666675 56777888888888888888888766553 33    2333


Q ss_pred             HHHHHcCCCcceeeeeeeee----------------------------------------eEe-----------------
Q 015596          134 AVKANLGGKKVIFCGLIQYL----------------------------------------NLF-----------------  156 (404)
Q Consensus       134 l~~~~~G~~~~~l~~~~~~~----------------------------------------~l~-----------------  156 (404)
                      -+++.+|+...++++...++                                        |++                 
T Consensus        81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki  160 (456)
T PRK10238         81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV  160 (456)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35567888654433221110                                        000                 


Q ss_pred             ---------------ec-Cc-----hh-----hh------HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596          157 ---------------VT-GT-----QK-----LW------RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT  204 (404)
Q Consensus       157 ---------------~~-~~-----~~-----~~------~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~  204 (404)
                                     .. ..     ..     .|      .+..+++...|+|.|-..+...-.|+|+|+   |+.+|++
T Consensus       161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi  237 (456)
T PRK10238        161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKAT  237 (456)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHH
Confidence                           00 00     00     01      345677889999999999999999999994   7899999


Q ss_pred             HHHHHHHHHHHHHHHhHHH--hhcCCCC--chhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-
Q 015596          205 LFSIIVTTTFYLLCGCMGY--AAFGDLA--PNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-  279 (404)
Q Consensus       205 ~~a~~~~~~~y~~~g~~gy--~~fG~~~--~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-  279 (404)
                      ..++....++|+..-....  .-+.+-.  .+.+...+......+...+.++..++..+.+..-......+.+...-++ 
T Consensus       238 ~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg  317 (456)
T PRK10238        238 NQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQG  317 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8888888888875433321  1111110  1111110100011233444555555555544433333333333333211 


Q ss_pred             cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596          280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK  357 (404)
Q Consensus       280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~  357 (404)
                      ..|+  +..+-++.+.|        ...+.+...+.++..++....|  .++.++++.+  .+..+.|.+|.+.+++.+|
T Consensus       318 ~lP~--~f~kv~~~~~P--------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~  385 (456)
T PRK10238        318 NAPK--ALASVDKRGVP--------VNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRR  385 (456)
T ss_pred             CccH--HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            1131  12221112334        3333333333333332222233  3566666644  3457899999999998765

>PRK10746 putative transport protein YifK; Provisional

Probab=99.04  E-value=7.6e-08  Score=97.61  Aligned_cols=283  Identities=11%  Similarity=0.031  Sum_probs=164.5

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..+.++||+|++..|.. .+..|- ..++.+++.+++.+.....+.|.....+. .|    .+.+-+
T Consensus         7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sG----g~~~y~   80 (461)
T PRK10746          7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TG----SFAVYA   80 (461)
T ss_pred             HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHH
Confidence            456788899999999999999999987765 777887 46778888888888888888888766543 33    345556


Q ss_pred             HHHcCCCcceeeeeeee-----------------e-----------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQY-----------------L-----------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~-----------------~-----------------------~l~-------------------  156 (404)
                      ++.+|+...++++...+                 +                       |++                   
T Consensus        81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~  160 (461)
T PRK10746         81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT  160 (461)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            67788765433221110                 0                       000                   


Q ss_pred             ---------------ecC--c----h-----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596          157 ---------------VTG--T----Q-----------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT  204 (404)
Q Consensus       157 ---------------~~~--~----~-----------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~  204 (404)
                                     ..+  .    .           ...++..++....|+|.+...+...-.|+|||+   |+.+|++
T Consensus       161 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai  237 (461)
T PRK10746        161 IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAV  237 (461)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHH
Confidence                           000  0    0           011356899999999999999999999999994   8999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHhhcCCCCch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-
Q 015596          205 LFSIIVTTTFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-  279 (404)
Q Consensus       205 ~~a~~~~~~~y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-  279 (404)
                      ..++....++|++...........+..+    .+...+..........+.++...++.+.+.--.+....+.+...-.+ 
T Consensus       238 ~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g  317 (461)
T PRK10746        238 GKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNR  317 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9888888899987655544443332111    11111100011222344555555555555433333333333333221 


Q ss_pred             cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhh--hhhhHHHHhhHHhHHhhcc
Q 015596          280 KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAM--GFWPLTVYFPIEMYKAQKK  357 (404)
Q Consensus       280 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~--~~~~l~fi~P~l~yl~~~~  357 (404)
                      ..|+  +..+..+.+.|        ...+.......++...+....|+-+.+++.+-++  .+..+.++++++.|++.+|
T Consensus       318 ~lP~--~~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~  387 (461)
T PRK10746        318 QLPA--AMAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRR  387 (461)
T ss_pred             CcCH--HHHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122  11111112334        2333332222233333444456555554444322  2357888888888888765


Q ss_pred             C
Q 015596          358 I  358 (404)
Q Consensus       358 ~  358 (404)
                      +
T Consensus       388 ~  388 (461)
T PRK10746        388 A  388 (461)
T ss_pred             h
Confidence            4

>TIGR00909 2A0306 amino acid transporter

Probab=98.99  E-value=7.8e-08  Score=96.63  Aligned_cols=205  Identities=18%  Similarity=0.135  Sum_probs=129.0

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIA-QLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      +|+.+.++.++..+++++|+|++.+|.... ..|. ..++.+++.+++.......+.|.....+...|  .++|.+   +
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg--~y~~~~---~   75 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGS--PYTYAY---E   75 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--ceeeHH---H
Confidence            467889999999999999999999997644 4454 45667777788887788888888766554323  234443   5


Q ss_pred             HcCCCcceeeeee----------------------------------e----------------------eeeEe-----
Q 015596          138 NLGGKKVIFCGLI----------------------------------Q----------------------YLNLF-----  156 (404)
Q Consensus       138 ~~G~~~~~l~~~~----------------------------------~----------------------~~~l~-----  156 (404)
                      .+||+..++++..                                  .                      ++++.     
T Consensus        76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~  155 (429)
T TIGR00909        76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES  155 (429)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence            6676543221100                                  0                      00000     


Q ss_pred             -------------------------ec-----C--chhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596          157 -------------------------VT-----G--TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT  204 (404)
Q Consensus       157 -------------------------~~-----~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~  204 (404)
                                               .+     +  +....++..++....|+|.+......+..|+|+|+   |+.+|++
T Consensus       156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai  232 (429)
T TIGR00909       156 GKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAI  232 (429)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHH
Confidence                                     00     0  01122467888899999999999999999999984   7899999


Q ss_pred             HHHHHHHHHHHHHHHhHHHhhcCCC--C--ch---hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHH
Q 015596          205 LFSIIVTTTFYLLCGCMGYAAFGDL--A--PN---NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEK  275 (404)
Q Consensus       205 ~~a~~~~~~~y~~~g~~gy~~fG~~--~--~~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~  275 (404)
                      ..++.++.++|++...........+  .  ++   .+....   ...+...+..++.++....+.--......+.+..
T Consensus       233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~  307 (429)
T TIGR00909       233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL---GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA  307 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998876655332211  0  00   111111   1234444566666666666654444433343333

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.99  E-value=1.8e-07  Score=94.80  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=111.7

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+.+.++..+..+.+++|+|++.+|.. .+..|- ..++.+++.+++.......+.|.....+...|  .++   .+
T Consensus         6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg--~y~---y~   79 (457)
T PRK10580          6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASS--FSR---YA   79 (457)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HHH---HH
Confidence            456778999999999999999999999876 667776 46888888888888888889998866553322  123   44


Q ss_pred             HHHcCCCcceeeeeeeee----------------------------------------eEe-------------------
Q 015596          136 KANLGGKKVIFCGLIQYL----------------------------------------NLF-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~~----------------------------------------~l~-------------------  156 (404)
                      ++.+|+...++++...++                                        |++                   
T Consensus        80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~  159 (457)
T PRK10580         80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVAT  159 (457)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence            677787654332211100                                        000                   


Q ss_pred             ---------------e--c-Cch---h------h----h-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596          157 ---------------V--T-GTQ---K------L----W-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT  204 (404)
Q Consensus       157 ---------------~--~-~~~---~------~----~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~  204 (404)
                                     .  . ...   .      .    + ++..++....|+|.+.......-.|+|+|+   |+.+|++
T Consensus       160 l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi  236 (457)
T PRK10580        160 IIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAI  236 (457)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHH
Confidence                           0  0 000   0      1    1 456788889999999999999999999994   6799999


Q ss_pred             HHHHHHHHHHHHHHHhHH
Q 015596          205 LFSIIVTTTFYLLCGCMG  222 (404)
Q Consensus       205 ~~a~~~~~~~y~~~g~~g  222 (404)
                      ..+.....++|+......
T Consensus       237 ~~~~~~~~~~y~~~~~~~  254 (457)
T PRK10580        237 NSVPMRILVFYVGTLFVI  254 (457)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            988888888888775443

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.97  E-value=1.1e-07  Score=96.06  Aligned_cols=159  Identities=16%  Similarity=0.248  Sum_probs=112.9

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWV-AGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~-~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      +.+|+.+.++++...+..++|+|++..|.. ....|-. ..++.+++.+++.......+.|.....+...|  .+.|.+ 
T Consensus         5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG--~y~y~~-   81 (445)
T PRK11357          5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA--DYVYLK-   81 (445)
T ss_pred             cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ceeeHH-
Confidence            357788999999999999999999999886 4455643 35667778888888888888888876665444  345544 


Q ss_pred             HHHHcCCCcceeeeeeee------------------e-------------------------eEe---------------
Q 015596          135 VKANLGGKKVIFCGLIQY------------------L-------------------------NLF---------------  156 (404)
Q Consensus       135 ~~~~~G~~~~~l~~~~~~------------------~-------------------------~l~---------------  156 (404)
                        +.+|+...++++...+                  +                         +..               
T Consensus        82 --~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~  159 (445)
T PRK11357         82 --NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA  159 (445)
T ss_pred             --HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence              5667654322211100                  0                         000               


Q ss_pred             ---------------ecC-----c--------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHH
Q 015596          157 ---------------VTG-----T--------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSI  208 (404)
Q Consensus       157 ---------------~~~-----~--------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~  208 (404)
                                     ...     .        ....++..++....|+|.+......+-+|+|||+   |+.+|++..++
T Consensus       160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~  236 (445)
T PRK11357        160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSC  236 (445)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHH
Confidence                           000     0        0122456778888999999999999999999994   78999999999


Q ss_pred             HHHHHHHHHHHhHHH
Q 015596          209 IVTTTFYLLCGCMGY  223 (404)
Q Consensus       209 ~~~~~~y~~~g~~gy  223 (404)
                      .+++++|++......
T Consensus       237 ~i~~~~Y~l~~~~~~  251 (445)
T PRK11357        237 LLVLVLYTLLALVIS  251 (445)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998776544

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.96  E-value=1.7e-07  Score=95.52  Aligned_cols=156  Identities=15%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             cccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      +|+.+.++..+..+..+||+|++..|. +.++.|....++.+++.+++.......+.|.....+...|    .|...+++
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~   76 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR   76 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence            366788999999999999999998765 5778886545777888888888888888998876553333    46667778


Q ss_pred             HcCCCcceeeeeeeee----------------------------------------eEe---------------------
Q 015596          138 NLGGKKVIFCGLIQYL----------------------------------------NLF---------------------  156 (404)
Q Consensus       138 ~~G~~~~~l~~~~~~~----------------------------------------~l~---------------------  156 (404)
                      .+|+...++++..+++                                        |+.                     
T Consensus        77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~  156 (478)
T TIGR00913        77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAII  156 (478)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8888755433221110                                        000                     


Q ss_pred             -----------e-c-Cc-----------h---------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHH
Q 015596          157 -----------V-T-GT-----------Q---------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKA  203 (404)
Q Consensus       157 -----------~-~-~~-----------~---------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~  203 (404)
                                 . . ..           .         ...++..++....|+|.|......+-+|+|+|+   |+.+|+
T Consensus       157 ~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPra  233 (478)
T TIGR00913       157 GFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRA  233 (478)
T ss_pred             HHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHH
Confidence                       0 0 00           0         023466788888999999999999999999984   789999


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q 015596          204 TLFSIIVTTTFYLLCGCM  221 (404)
Q Consensus       204 ~~~a~~~~~~~y~~~g~~  221 (404)
                      +..++.++.++|++..+.
T Consensus       234 i~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       234 AKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987654

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.95  E-value=6.8e-08  Score=99.07  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=112.7

Q ss_pred             CCccccccHHHHHHHHHhhhhhHhhhHHHHH-HHHhChhH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 015596           56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVA-GPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD  133 (404)
Q Consensus        56 ~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~-g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~  133 (404)
                      .+.+|+.+.++++...+++++|+|++..|.. ..+.|-.. .++.+++.+++.......+.|.....+...|  .+.|.+
T Consensus        38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG--~y~~~~  115 (501)
T TIGR00911        38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGG--EYNYIL  115 (501)
T ss_pred             cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--hhhhHH
Confidence            4467888999999999999999999998876 56677542 3355677777777778888888776554333  234433


Q ss_pred             HHHHHcCCCcceeeeee------------------eee-----------------------------eEe----------
Q 015596          134 AVKANLGGKKVIFCGLI------------------QYL-----------------------------NLF----------  156 (404)
Q Consensus       134 l~~~~~G~~~~~l~~~~------------------~~~-----------------------------~l~----------  156 (404)
                         +.+|+...++....                  .++                             |++          
T Consensus       116 ---~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~  192 (501)
T TIGR00911       116 ---EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQD  192 (501)
T ss_pred             ---hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence               45666533211100                  000                             000          


Q ss_pred             --------------------ecC--------c-------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhH
Q 015596          157 --------------------VTG--------T-------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK  201 (404)
Q Consensus       157 --------------------~~~--------~-------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~  201 (404)
                                          ...        .       ....++..++....|+|.|...+..+..|+|+|+   |+.+
T Consensus       193 i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iP  269 (501)
T TIGR00911       193 IFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLP  269 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhH
Confidence                                000        0       0122466788899999999999999999999994   7899


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhc
Q 015596          202 KATLFSIIVTTTFYLLCGCMGYAAF  226 (404)
Q Consensus       202 ~~~~~a~~~~~~~y~~~g~~gy~~f  226 (404)
                      |++..++.+++++|++..+......
T Consensus       270 rAi~~s~~~v~~~Y~l~~~a~~~~~  294 (501)
T TIGR00911       270 IAIIISMPIVTFIYVLTNIAYFTVL  294 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999876655444

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.90  E-value=3.2e-07  Score=95.07  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=156.0

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAI--AQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af--~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      +.+|+.+.++.++.-+.+++|+|++.+|...  ...|-. .++.+++.++.+......+.|.....+...|  .+.|.. 
T Consensus        25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg--~Y~y~~-  100 (557)
T TIGR00906        25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS--AYLYSY-  100 (557)
T ss_pred             chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--ceeeHH-
Confidence            4678899999999999999999999998653  346754 5667778888888888888888776654333  244433 


Q ss_pred             HHHHcCCCcceeeeee--------------------------------------------ee--------------eeEe
Q 015596          135 VKANLGGKKVIFCGLI--------------------------------------------QY--------------LNLF  156 (404)
Q Consensus       135 ~~~~~G~~~~~l~~~~--------------------------------------------~~--------------~~l~  156 (404)
                        ..+|+...++++..                                            ..              ++++
T Consensus       101 --~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       101 --VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             --HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence              23344322111000                                            00              0000


Q ss_pred             ------------------------------ec--Cc---------h----hhhHHHHHHHHHHHhhhhhhhHHHHHHHhc
Q 015596          157 ------------------------------VT--GT---------Q----KLWRSLQALGAIAFAYSFSIILLEIQDTIR  191 (404)
Q Consensus       157 ------------------------------~~--~~---------~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~  191 (404)
                                                    .+  +.         +    ...+++.++....|+|.|...+...-.|+|
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k  258 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK  258 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence                                          00  00         0    012467888899999999999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC---CchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhccccc
Q 015596          192 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL---APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQP  268 (404)
Q Consensus       192 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p  268 (404)
                      +|+   |+.++++..++.+++++|+++.+.-...-..+   ..+.+...+......+...+..++.++.+..+....+..
T Consensus       259 nP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~  335 (557)
T TIGR00906       259 NPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP  335 (557)
T ss_pred             Ccc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            994   78999999999999999998876644333221   111111111111223444455555555555444333333


Q ss_pred             HHHHHHHHhhc-cCCCCccccccc-cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhhhhhhHHHH
Q 015596          269 LFAFVEKWSAK-KWPKSDLVTAEY-EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVY  346 (404)
Q Consensus       269 ~~~~~e~~~~~-~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~liGa~~~~~l~fi  346 (404)
                      .-+.+...-.+ ..|+  +..+-+ +.+.|        ...+..   ..+++.+++.. .+++.+.++...  +..+.|.
T Consensus       336 ~sRil~amarDGlLP~--~fakv~~r~~tP--------~~Ail~---~~iv~~il~~~-~~~~~l~~l~si--g~ll~y~  399 (557)
T TIGR00906       336 LPRVIYAMARDGLLFK--WLAQINSKTKTP--------INATVV---SGAIAALMAFL-FDLKALVDLLSI--GTLLAYS  399 (557)
T ss_pred             HHHHHHHHHcCCCccH--HHhccCCCCCCc--------HHHHHH---HHHHHHHHHHH-cCHHHHHHHHHH--HHHHHHH
Confidence            33333332211 1121  111111 11233        111111   12223333333 356777776543  3578888


Q ss_pred             hhHHhHHhhcc
Q 015596          347 FPIEMYKAQKK  357 (404)
Q Consensus       347 ~P~l~yl~~~~  357 (404)
                      +++...+..|+
T Consensus       400 lv~~~~l~lR~  410 (557)
T TIGR00906       400 LVAACVLILRY  410 (557)
T ss_pred             HHHHHHHHhhc
Confidence            88777766653

>TIGR00908 2A0305 ethanolamine permease

Probab=98.87  E-value=4.5e-07  Score=91.50  Aligned_cols=157  Identities=14%  Similarity=0.125  Sum_probs=108.0

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      +.+|+.+.++.....+..++|....+.+.+.++.|+..-++..++.+++.......+.|.....+...|  .+.   -++
T Consensus         4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg--~y~---~~~   78 (442)
T TIGR00908         4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGG--GYG---FAR   78 (442)
T ss_pred             hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHH
Confidence            356778899999999999998555566888999999765666666776666667778888766554333  123   446


Q ss_pred             HHcCCCcceeeeeeee-----------------e-----------------------eEe--------------------
Q 015596          137 ANLGGKKVIFCGLIQY-----------------L-----------------------NLF--------------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~~-----------------~-----------------------~l~--------------------  156 (404)
                      +.+|+...++++...+                 +                       |++                    
T Consensus        79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l  158 (442)
T TIGR00908        79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIAL  158 (442)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7888865443221110                 0                       000                    


Q ss_pred             --------ec-Cch----------------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHH
Q 015596          157 --------VT-GTQ----------------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVT  211 (404)
Q Consensus       157 --------~~-~~~----------------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~  211 (404)
                              .. +..                ...+++.++....|+|.+......+-+|+|||+   |+.+|++..++.++
T Consensus       159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~  235 (442)
T TIGR00908       159 GVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTL  235 (442)
T ss_pred             HHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHH
Confidence                    00 000                012456777788999999999999999999994   78999999999998


Q ss_pred             HHHHHHHHhH
Q 015596          212 TTFYLLCGCM  221 (404)
Q Consensus       212 ~~~y~~~g~~  221 (404)
                      .++|+.....
T Consensus       236 ~~~~~~~~~~  245 (442)
T TIGR00908       236 LALAAGILVV  245 (442)
T ss_pred             HHHHHHHHHH
Confidence            8888876443

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.84  E-value=5.3e-07  Score=91.14  Aligned_cols=262  Identities=18%  Similarity=0.166  Sum_probs=155.6

Q ss_pred             HhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeeeee
Q 015596           72 ITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLI  150 (404)
Q Consensus        72 ~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~~~  150 (404)
                      ++++||+|++-.|. +.++.|. ..++.+++.+++.......+.|.....+. .|    ..-+-+++.+|+...++++..
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~G----g~y~y~~~~~G~~~gf~~gw~   77 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TG----SFSTYADKAIGRWAGYTIGWL   77 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHHHHcChHHHHHHHHH
Confidence            57899999999887 6888896 58888999999999999999998876553 33    333445588887654332211


Q ss_pred             eee----------------------------------------eEe------------------------------ec--
Q 015596          151 QYL----------------------------------------NLF------------------------------VT--  158 (404)
Q Consensus       151 ~~~----------------------------------------~l~------------------------------~~--  158 (404)
                      .++                                        |++                              ..  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~  157 (446)
T PRK10197         78 YWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGF  157 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            100                                        000                              00  


Q ss_pred             -C--c--------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 015596          159 -G--T--------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC  220 (404)
Q Consensus       159 -~--~--------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~  220 (404)
                       .  .              +..| ++..++....|+|.|...+...-.|+|||+   |+.+|++..++..+.++|++..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~  234 (446)
T PRK10197        158 YPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIF  234 (446)
T ss_pred             CCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHH
Confidence             0  0              0011 577889999999999999999999999984   78999999999999999998666


Q ss_pred             HHHhhcCCCCc-----h---hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCCCCccccccc
Q 015596          221 MGYAAFGDLAP-----N---NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLVTAEY  291 (404)
Q Consensus       221 ~gy~~fG~~~~-----~---~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~~~~~~~~~~  291 (404)
                      ..-.....+..     +   ......+   ..+...+.++..+++.+.+.--.+....+.+...-.+ ..|+  +..+..
T Consensus       235 ~~~~~~p~~~~~~~~~~~~~~~~~~~g---~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~--~~~~~~  309 (446)
T PRK10197        235 VVVALIPWNMPGLKAVGSYRSVLELLN---IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA--VMGKIN  309 (446)
T ss_pred             HHheecCcCcccccccCcHHHHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhC
Confidence            64333222211     1   1122221   2334455566666665555544444444444333321 1221  122211


Q ss_pred             cCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhcc
Q 015596          292 EIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK  357 (404)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~  357 (404)
                      +.+.|        ...+.....+.++..+.....|  .++.++++.+...  .+.++++++.+++.+|
T Consensus       310 ~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~  367 (446)
T PRK10197        310 RSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK  367 (446)
T ss_pred             cCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            22344        3333333333333333322223  4677777776554  4888888888887654

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.80  E-value=1.9e-07  Score=91.60  Aligned_cols=160  Identities=19%  Similarity=0.229  Sum_probs=117.0

Q ss_pred             cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596           61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG  140 (404)
Q Consensus        61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G  140 (404)
                      +.|.+|..+.++.+++|+|++.+|...++.+--.+.+..++.+++......++.+..+..+.      .+..|..++.+|
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~------~~~~~~~~~~~G   75 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE------KNFSEILSKYLG   75 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhh
Confidence            46789999999999999999999998766544446666777777777777888887765331      268888999999


Q ss_pred             CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596          141 GKKVIFCGLIQYLNLF----------------------------------------------------------------  156 (404)
Q Consensus       141 ~~~~~l~~~~~~~~l~----------------------------------------------------------------  156 (404)
                      |+...+.+....+++.                                                                
T Consensus        76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~i  155 (359)
T TIGR00912        76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILV  155 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9866554332111100                                                                


Q ss_pred             ----ecCc-----------hhhhHHHHHH-HHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 015596          157 ----VTGT-----------QKLWRSLQAL-GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC  220 (404)
Q Consensus       157 ----~~~~-----------~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~  220 (404)
                          ..+.           ....+...+. ....++|.+...+..+..++|+|    |+.+|+...+..+++++|++.-+
T Consensus       156 l~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~  231 (359)
T TIGR00912       156 LILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTF  231 (359)
T ss_pred             HHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence                0000           0011233333 36788999888888888999987    88999999999999999999999


Q ss_pred             HHHhhcCCCC
Q 015596          221 MGYAAFGDLA  230 (404)
Q Consensus       221 ~gy~~fG~~~  230 (404)
                      .....+|.+.
T Consensus       232 ~~i~~lg~~~  241 (359)
T TIGR00912       232 VSISVFGGNV  241 (359)
T ss_pred             HHHheecHHH
Confidence            9999998763

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.71  E-value=9.5e-07  Score=88.60  Aligned_cols=273  Identities=18%  Similarity=0.217  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCC
Q 015596           63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN-LYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG  141 (404)
Q Consensus        63 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~-~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~  141 (404)
                      ++++++...+++++|+|++..| ..++.|.. .++..++.+++. ......+.|..+..++..|     .-.-+++.+|+
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG-----~y~~~~~~~g~   74 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGG-----IYVWVSRAFGP   74 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTT-----HHHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCe-----eeehhhhcccc
Confidence            6889999999999999999999 77777775 666666666655 5666777787665443333     22344566777


Q ss_pred             Ccceeeeeeeee-----------------------e-----------------------Ee-------------------
Q 015596          142 KKVIFCGLIQYL-----------------------N-----------------------LF-------------------  156 (404)
Q Consensus       142 ~~~~l~~~~~~~-----------------------~-----------------------l~-------------------  156 (404)
                      +..++.....++                       .                       +.                   
T Consensus        75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~  154 (426)
T PF13520_consen   75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI  154 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             cchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence            654332211100                       0                       00                   


Q ss_pred             ------------ecCc-------------hhhh-HHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHH
Q 015596          157 ------------VTGT-------------QKLW-RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIV  210 (404)
Q Consensus       157 ------------~~~~-------------~~~~-~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~  210 (404)
                                  .+.+             .+.| .++.++....|+|.+......+.+|+|+     |+.+|++.+++.+
T Consensus       155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~  229 (426)
T PF13520_consen  155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIII  229 (426)
T ss_dssp             HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHH
T ss_pred             hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-----hhheeecccchhH
Confidence                        0000             0011 3678899999999999999999999775     6899999999999


Q ss_pred             HHHHHHHHHhHHHhhcCCCCc---hhhh---ccc-CCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCC
Q 015596          211 TTTFYLLCGCMGYAAFGDLAP---NNLL---TGF-GFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWP  282 (404)
Q Consensus       211 ~~~~y~~~g~~gy~~fG~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~  282 (404)
                      +.++|++.........+++..   ++..   ..+ ......+...+..++..+....+.........+.+...-++ ..|
T Consensus       230 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP  309 (426)
T PF13520_consen  230 VAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP  309 (426)
T ss_dssp             HHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchh
Confidence            999999998887777666421   1211   000 00011234455556666666666655555555555554432 224


Q ss_pred             CCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCC
Q 015596          283 KSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG  359 (404)
Q Consensus       283 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~  359 (404)
                      + . ..+.++.+.|        ..-+.+...+..+..++....|  +++.+.+...  ....+.++++.+.+++.++++
T Consensus       310 ~-~-~~~~~k~~~P--------~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~  376 (426)
T PF13520_consen  310 K-W-FAKVNKFGTP--------YNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRRKR  376 (426)
T ss_dssp             G-G-GGTTSSSSSC--------HHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHHHS
T ss_pred             h-h-hhhccccCCc--------eeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence            1 1 2222223333        2222222222111111112233  4555665443  345667777777776665443

...

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.59  E-value=1.5e-05  Score=80.67  Aligned_cols=162  Identities=18%  Similarity=0.275  Sum_probs=110.0

Q ss_pred             ccccccHHH-HHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           58 LKRTGNFWT-TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        58 ~~r~~s~~~-a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      .+++.+.++ .....+..++|.|++.+|......+ ....+.+++.+++.......+.|.....+...|  .+.|.   +
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG--~y~~~---~   83 (466)
T COG0531          10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGG--AYAYA---K   83 (466)
T ss_pred             cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--eeeeh---h
Confidence            344555666 8888899999999999999887776 333333566666666666777777765443333  23444   4


Q ss_pred             HHcCCCcceeeeeeee---------------------eeE--------e-------------------------------
Q 015596          137 ANLGGKKVIFCGLIQY---------------------LNL--------F-------------------------------  156 (404)
Q Consensus       137 ~~~G~~~~~l~~~~~~---------------------~~l--------~-------------------------------  156 (404)
                      +.+|++..++++...+                     ...        .                               
T Consensus        84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~  163 (466)
T COG0531          84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSII  163 (466)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777654332211000                     000        0                               


Q ss_pred             ------------------ecC-----c-------hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHH
Q 015596          157 ------------------VTG-----T-------QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLF  206 (404)
Q Consensus       157 ------------------~~~-----~-------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~  206 (404)
                                        .+.     .       .....+..++....++|.|-......-+|+|||.   |+.+|++..
T Consensus       164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~  240 (466)
T COG0531         164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIIL  240 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHH
Confidence                              000     0       0111367888889999999999999999999983   679999999


Q ss_pred             HHHHHHHHHHHHHhHHHhhcCC
Q 015596          207 SIIVTTTFYLLCGCMGYAAFGD  228 (404)
Q Consensus       207 a~~~~~~~y~~~g~~gy~~fG~  228 (404)
                      ++.+++++|++.........++
T Consensus       241 ~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         241 SLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCccH
Confidence            9999999999998888887775

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.40  E-value=6.8e-05  Score=76.59  Aligned_cols=59  Identities=12%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 015596          166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG  227 (404)
Q Consensus       166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG  227 (404)
                      ...++....|+|.+......+-+|+|+|+   |+.+|++..++.+..+++++..+.-+...+
T Consensus       219 ~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       219 FLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44455567799999999999999999994   789999999988777655544444444444

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.40  E-value=5.6e-05  Score=77.49  Aligned_cols=55  Identities=22%  Similarity=0.167  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 015596          166 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY  223 (404)
Q Consensus       166 ~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy  223 (404)
                      ...++....|+|.+.......-.|+|+|+   |+.+|++..++..+.++|++..++..
T Consensus       213 ~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~  267 (496)
T PRK15238        213 VLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG  267 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667778899999999999999999994   78999999999999999998654443

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.34  E-value=2.1e-05  Score=77.17  Aligned_cols=279  Identities=16%  Similarity=0.172  Sum_probs=168.2

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|..+.+.--+.-+...||+|.+ +-..+.+.+|-- -++..++.|++.+.=++.|.|...+.+ ..    .++.+.+
T Consensus        10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p-~~----gSF~~~a   83 (462)
T COG1113          10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP-VS----GSFSDYA   83 (462)
T ss_pred             hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CC----CcHHHHH
Confidence            3456677888888899999999986 567788888864 466778888999999999999876533 32    3899999


Q ss_pred             HHHcCCCcceeeeeeeeeeE----------------------------------------e-------------------
Q 015596          136 KANLGGKKVIFCGLIQYLNL----------------------------------------F-------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~l~~~~~~~~l----------------------------------------~-------------------  156 (404)
                      ++.+|++..++.+...+.+.                                        .                   
T Consensus        84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~a  163 (462)
T COG1113          84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAA  163 (462)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997655433221110                                        0                   


Q ss_pred             ----------------e-c----Cchh-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHH
Q 015596          157 ----------------V-T----GTQK-----------LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT  204 (404)
Q Consensus       157 ----------------~-~----~~~~-----------~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~  204 (404)
                                      . +    ..++           ..+++.++-+.+|||++...+----.|.|||.   |..+|+.
T Consensus       164 Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAi  240 (462)
T COG1113         164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAI  240 (462)
T ss_pred             HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHH
Confidence                            0 0    0111           23578999999999999999999999999994   5677775


Q ss_pred             HHHHHHHHHHHH-----HHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc
Q 015596          205 LFSIIVTTTFYL-----LCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK  279 (404)
Q Consensus       205 ~~a~~~~~~~y~-----~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~  279 (404)
                      ..-..=..++|+     +..+.-+-.++++.++ +..-|...+-.+...+.|.....+...++-=-.+..-+.+.++..+
T Consensus       241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~  319 (462)
T COG1113         241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQ  319 (462)
T ss_pred             hhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhc
Confidence            554444444444     5555555555554433 2222211111222334444333333333322222333344443321


Q ss_pred             -cCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCC--hHHHHHHHhhhhhhhHHHHhhHHhHHhhc
Q 015596          280 -KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FNDVVGILGAMGFWPLTVYFPIEMYKAQK  356 (404)
Q Consensus       280 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~--~~~i~~liGa~~~~~l~fi~P~l~yl~~~  356 (404)
                       .-|+.  .++-.+..+|        ...++..+....+..++....|.  |+.+.+..+..  .+....+=.+.|+|.+
T Consensus       320 g~APk~--~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~r  387 (462)
T COG1113         320 GDAPKA--FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLR  387 (462)
T ss_pred             CcccHh--HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence             11221  1111111344        56677777777788888888883  55555555543  3445555567788876


Q ss_pred             c
Q 015596          357 K  357 (404)
Q Consensus       357 ~  357 (404)
                      |
T Consensus       388 k  388 (462)
T COG1113         388 K  388 (462)
T ss_pred             h
Confidence            6

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.32  E-value=0.00013  Score=74.45  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             HHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596          172 AIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  228 (404)
Q Consensus       172 ~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~  228 (404)
                      .+.|+|.|...+...-+|+|||+   |+.+|++..++.++.++|++..+......++
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~  255 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPR  255 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence            45689999999999999999994   7899999999999999999877665554443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.20  E-value=0.00035  Score=71.80  Aligned_cols=51  Identities=14%  Similarity=0.083  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 015596          168 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM  221 (404)
Q Consensus       168 ~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~  221 (404)
                      ..+..+.|+|.|.......-+|+|+|+   |+++|++..++.++.++|.+..+.
T Consensus       198 ~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~~~  248 (507)
T TIGR00910       198 VVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGGFS  248 (507)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344456889999999999999999994   789999999999999999865543

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.18  E-value=0.0016  Score=66.49  Aligned_cols=163  Identities=13%  Similarity=-0.036  Sum_probs=105.7

Q ss_pred             CccccccHHHHHHHHHhhh-hhHhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAV-IGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~-iG~GiL~lP~a-f~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      +.+|+-+.++.+..-++.+ +|+|+.+++.. ..+.|- ..+..+++.++........+.|.....+...|  .+.|   
T Consensus        10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG--~Y~~---   83 (475)
T TIGR03428        10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGA--IYQW---   83 (475)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--HHHH---
Confidence            3567788888887777764 89999987665 667776 46777777788888888888888776554333  2333   


Q ss_pred             HHHHcCCCcceeeeee--------------------------------------------------------eeeeEe--
Q 015596          135 VKANLGGKKVIFCGLI--------------------------------------------------------QYLNLF--  156 (404)
Q Consensus       135 ~~~~~G~~~~~l~~~~--------------------------------------------------------~~~~l~--  156 (404)
                      +++.+|+...++++..                                                        ..+|++  
T Consensus        84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~  163 (475)
T TIGR03428        84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGV  163 (475)
T ss_pred             HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3355566533221100                                                        000000  


Q ss_pred             ----------------------------ecC--------c----hh--hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCC
Q 015596          157 ----------------------------VTG--------T----QK--LWRSLQALGAIAFAYSFSIILLEIQDTIRSPP  194 (404)
Q Consensus       157 ----------------------------~~~--------~----~~--~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~  194 (404)
                                                  .++        .    ..  .+.+..+.....|+|.|......+-+|+|||+
T Consensus       164 k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~  243 (475)
T TIGR03428       164 EWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR  243 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc
Confidence                                        000        0    00  11244566667899999999999999999994


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 015596          195 AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD  228 (404)
Q Consensus       195 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~  228 (404)
                         |+.+|++..++.+.+++|.++-+......++
T Consensus       244 ---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~  274 (475)
T TIGR03428       244 ---RVAPRTILTALSVSALGGGLMILGALMAAPS  274 (475)
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence               7899999999998887776666555554443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.11  E-value=5.6e-05  Score=75.77  Aligned_cols=280  Identities=19%  Similarity=0.135  Sum_probs=169.9

Q ss_pred             CccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           57 RLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        57 ~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      +.+|+...+.-.+.-+...||+|++ +.-.+.++.|-...++..++++.+.++.+.-|.|.+...+ ..|    +|...+
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya  115 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA  115 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence            4678888888899999999999997 7899999999999999999999999999999999887766 444    455555


Q ss_pred             HHHcCCCcce----------eee----------eee---------------------eeeEe------------------
Q 015596          136 KANLGGKKVI----------FCG----------LIQ---------------------YLNLF------------------  156 (404)
Q Consensus       136 ~~~~G~~~~~----------l~~----------~~~---------------------~~~l~------------------  156 (404)
                      .+..++....          ++.          +++                     .+|++                  
T Consensus       116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~  195 (541)
T COG0833         116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL  195 (541)
T ss_pred             hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence            5554443211          110          000                     01111                  


Q ss_pred             -----------------ec---------Cc-----hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596          157 -----------------VT---------GT-----QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL  205 (404)
Q Consensus       157 -----------------~~---------~~-----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~  205 (404)
                                       .+         .+     ..+-++...+-+..|||++...+----.|-++|.   |..+|++.
T Consensus       196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik  272 (541)
T COG0833         196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIK  272 (541)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHH
Confidence                             00         00     1122467788888999999988888889999984   78888888


Q ss_pred             HHHHHHHHHHHHHHh-HHHh-hcCCC----------CchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHH
Q 015596          206 FSIIVTTTFYLLCGC-MGYA-AFGDL----------APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFV  273 (404)
Q Consensus       206 ~a~~~~~~~y~~~g~-~gy~-~fG~~----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~  273 (404)
                      -.+-=..++|++.-+ .|.+ -|.|.          ..+.+...+....-..+..+.|+.+.++++.+-==-++..-+.+
T Consensus       273 ~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L  352 (541)
T COG0833         273 QVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRML  352 (541)
T ss_pred             HHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHH
Confidence            887777788874332 2222 22220          11222222211111234567777777777655433344444555


Q ss_pred             HHHhhcc-CCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC--ChHHHHHHHhhhhhhhHHHHhhHH
Q 015596          274 EKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTVYFPIE  350 (404)
Q Consensus       274 e~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp--~~~~i~~liGa~~~~~l~fi~P~l  350 (404)
                      ..+-.++ -|+  +.++--..-.|        ...+....++-+++++.+..-.  .++-++++.|-.  ..++.+.=++
T Consensus       353 ~sLA~~g~APk--~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~  420 (541)
T COG0833         353 YSLAKQGKAPK--IFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICL  420 (541)
T ss_pred             HHHHhcCCCch--HHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHH
Confidence            5544222 122  11111011122        4445555555555555555522  367778887754  4666677778


Q ss_pred             hHHhhc
Q 015596          351 MYKAQK  356 (404)
Q Consensus       351 ~yl~~~  356 (404)
                      .|++-|
T Consensus       421 shirFR  426 (541)
T COG0833         421 SHIRFR  426 (541)
T ss_pred             HHHHHH
Confidence            887754

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.08  E-value=3e-05  Score=74.82  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=109.9

Q ss_pred             cccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596           61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG  140 (404)
Q Consensus        61 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G  140 (404)
                      |.|..|....++.+++|+|++.+|...++.+ -.|.+..++.++.......++.+..+..+      +.+..|..++.+|
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~~G   73 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFP------GKTLVEISEKLFG   73 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhC
Confidence            3578899999999999999999999865553 12222333333333333344444443211      2489999999999


Q ss_pred             CCcceeeeeeeeeeEe----------------------------------------------------------------
Q 015596          141 GKKVIFCGLIQYLNLF----------------------------------------------------------------  156 (404)
Q Consensus       141 ~~~~~l~~~~~~~~l~----------------------------------------------------------------  156 (404)
                      |+...+......+..+                                                                
T Consensus        74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i  153 (320)
T PF03845_consen   74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI  153 (320)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9866544332211110                                                                


Q ss_pred             ----ec----------CchhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 015596          157 ----VT----------GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG  222 (404)
Q Consensus       157 ----~~----------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g  222 (404)
                          ..          -+....+.+.+.....+.|.+...+.-+...++++    ++.+|....+..+++++|+..-+..
T Consensus       154 ~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~  229 (320)
T PF03845_consen  154 LLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFIT  229 (320)
T ss_pred             HHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00          01123357777788888899888899999999988    8889999999999999999999999


Q ss_pred             HhhcCCC
Q 015596          223 YAAFGDL  229 (404)
Q Consensus       223 y~~fG~~  229 (404)
                      ...||.+
T Consensus       230 i~vfG~~  236 (320)
T PF03845_consen  230 IGVFGPE  236 (320)
T ss_pred             HHhcCHH
Confidence            9999975

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.52  E-value=0.00012  Score=74.79  Aligned_cols=151  Identities=24%  Similarity=0.285  Sum_probs=107.8

Q ss_pred             HhhhhhHhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeeeee
Q 015596           72 ITAVIGSGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLI  150 (404)
Q Consensus        72 ~~~~iG~GiL~-lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~~~  150 (404)
                      +.+++|+|++. .+.+..+.|....++..++.+++......-+.+..+..+ +.|    .+-..+++.+|+.....++..
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw~   81 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGWA   81 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeHH
Confidence            56789999885 677899999987888888888888888888888887655 333    233344466666533221110


Q ss_pred             --------------------e-----------ee----------------eEe--------------------------e
Q 015596          151 --------------------Q-----------YL----------------NLF--------------------------V  157 (404)
Q Consensus       151 --------------------~-----------~~----------------~l~--------------------------~  157 (404)
                                          +           ..                +++                          .
T Consensus        82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~  161 (478)
T PF00324_consen   82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVG  161 (478)
T ss_pred             HHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhc
Confidence                                0           00                000                          0


Q ss_pred             ----------cCc--------------h--------hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHH
Q 015596          158 ----------TGT--------------Q--------KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL  205 (404)
Q Consensus       158 ----------~~~--------------~--------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~  205 (404)
                                .+.              .        ..-+++.++....++|.+-......-.|.|+|+   |+.+|+..
T Consensus       162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~  238 (478)
T PF00324_consen  162 VIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATL  238 (478)
T ss_pred             ccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhh
Confidence                      001              0        023478899999999999999999999999994   79999999


Q ss_pred             HHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596          206 FSIIVTTTFYLLCGCMGYAAFGDLA  230 (404)
Q Consensus       206 ~a~~~~~~~y~~~g~~gy~~fG~~~  230 (404)
                      .++...+++|++.....-...|.+.
T Consensus       239 ~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  239 LSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhhhhhhhhhhhhhhhcccccCccc
Confidence            9999999999988887777666553

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00053  Score=70.55  Aligned_cols=280  Identities=17%  Similarity=0.121  Sum_probs=164.9

Q ss_pred             CCccccccHHHHHHHHHhhhhhHhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           56 GRLKRTGNFWTTSSHIITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        56 ~~~~r~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      .+.+|+.+.+.-.+.-+.++||+|++ ....+.++.|-..-++..++.+...+.+...+.|..-..+...|. .++|.. 
T Consensus        26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs-~~~ya~-  103 (554)
T KOG1286|consen   26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGS-FYTYAY-  103 (554)
T ss_pred             chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccccc-ceeeee-
Confidence            45678888888888889999999998 567789999988888888899999999999999988655532121 122211 


Q ss_pred             HHHHcCCC----------------------------------------------cceeeee---eeeeeEe---------
Q 015596          135 VKANLGGK----------------------------------------------KVIFCGL---IQYLNLF---------  156 (404)
Q Consensus       135 ~~~~~G~~----------------------------------------------~~~l~~~---~~~~~l~---------  156 (404)
                        ...|+.                                              +.++...   ...++++         
T Consensus       104 --~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e  181 (554)
T KOG1286|consen  104 --RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE  181 (554)
T ss_pred             --eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence              111111                                              1111000   0000000         


Q ss_pred             ---------------------------ecC----chh------------hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCC
Q 015596          157 ---------------------------VTG----TQK------------LWRSLQALGAIAFAYSFSIILLEIQDTIRSP  193 (404)
Q Consensus       157 ---------------------------~~~----~~~------------~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p  193 (404)
                                                 .+.    ..+            +-++...+.+..|+|.+-..+-..-.|-|+|
T Consensus       182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP  261 (554)
T KOG1286|consen  182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP  261 (554)
T ss_pred             ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence                                       010    001            1146788999999999999999999999999


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhc-CCC--CchhhhcccCC------CCChHHHHHHHHHHHHHHHhhhhc
Q 015596          194 PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF-GDL--APNNLLTGFGF------YNPYWLIDIANAAIVVHLVGAYQV  264 (404)
Q Consensus       194 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f-G~~--~~~~il~~~~~------~~~~~~~~~~~~~~~i~~~~s~pl  264 (404)
                      +   |..++++..++..++++|++..+.-=+.- .++  ..++....-|+      ..-..+..+.|+..++.++.+---
T Consensus       262 ~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~  338 (554)
T KOG1286|consen  262 R---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS  338 (554)
T ss_pred             c---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence            5   88999999999999999998776543321 111  11111111011      011122237777777777777666


Q ss_pred             ccccHHHHHHHHhhccC-CCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcC-----ChHHHHHHHhhh
Q 015596          265 FCQPLFAFVEKWSAKKW-PKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP-----FFNDVVGILGAM  338 (404)
Q Consensus       265 ~~~p~~~~~e~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp-----~~~~i~~liGa~  338 (404)
                      .+++.-+.+..+...+. |+  +.++-.+...|        +...+..   .+...++++...     .++.++++.|- 
T Consensus       339 ~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P--------~~a~~v~---~~~~~l~~~~~~~~~~~~f~~L~~~~si-  404 (554)
T KOG1286|consen  339 SLYAGSRVLYALAKDGLAPK--FFARVDRRGVP--------LVAVLVS---GLFGALAALNFSLGAATVFNWLVNLSSI-  404 (554)
T ss_pred             HhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc--------hhHHHHH---HHHHHHHHHHhccccchHHHHHHHHHhH-
Confidence            66666666666543211 22  11110001222        2222222   223333333333     36888888875 


Q ss_pred             hhhhHHHHhhHHhHHhhcc
Q 015596          339 GFWPLTVYFPIEMYKAQKK  357 (404)
Q Consensus       339 ~~~~l~fi~P~l~yl~~~~  357 (404)
                       +..+++.+=++.|++.|+
T Consensus       405 -~tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  405 -GTLFAWTLVALSHLRFRY  422 (554)
T ss_pred             -HHHHHHHHHHHHHeeeee
Confidence             456777777777777553

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.04  E-value=0.024  Score=57.25  Aligned_cols=65  Identities=11%  Similarity=-0.019  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 015596          163 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA  230 (404)
Q Consensus       163 ~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~  230 (404)
                      .|.+..++-.-++.+.|-.....+-+|.++++   ++-++++..+..+..++=..+-+.-...-+++.
T Consensus       251 G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  251 GWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             hHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            34566677777788888899999999999984   778888888888887777766666666777543

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=96.97  E-value=0.0013  Score=57.64  Aligned_cols=53  Identities=23%  Similarity=0.463  Sum_probs=47.7

Q ss_pred             HHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015596           66 TTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYR  118 (404)
Q Consensus        66 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~  118 (404)
                      -...-+.|-++|+|-|+||.||+..||+.++.++.+.+++++.+....+++..
T Consensus        16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvieala   68 (319)
T KOG3832|consen   16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALA   68 (319)
T ss_pred             hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999999999999999999999999999998888764

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=95.98  E-value=0.8  Score=45.43  Aligned_cols=47  Identities=13%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             hhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 015596          179 FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL  229 (404)
Q Consensus       179 ~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~  229 (404)
                      .....++..+-.|++    |+......++..+...+..++|.....+.|+.
T Consensus       188 wa~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       188 WLPLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT  234 (386)
T ss_pred             HHHHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            334467777777766    66777778888888888889998888777764

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=95.90  E-value=0.87  Score=46.02  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHH-HhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh----cCCCC
Q 015596          164 WRSLQALGAIA-FAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDLA  230 (404)
Q Consensus       164 ~~~~~~~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fG~~~  230 (404)
                      +.+..++...+ +.-....+.++..+.+|++    ++-.+...+++....+...++|+.+-..    +|+..
T Consensus       207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       207 WAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            33444444322 2224556778888888887    4444557777777777777787777766    88763

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11375 allantoin permease; Provisional

Probab=95.84  E-value=2.6  Score=43.18  Aligned_cols=91  Identities=7%  Similarity=0.064  Sum_probs=45.0

Q ss_pred             hhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHH----HhhcCCCCc--hhhhcccCCCCChHHHHHHHHH
Q 015596          180 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG----YAAFGDLAP--NNLLTGFGFYNPYWLIDIANAA  253 (404)
Q Consensus       180 ~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~  253 (404)
                      ..+.+..-+-.|++    |+-.+...+++.+..++..++|++.    ...+|+...  .+++..+   +......++-+.
T Consensus       244 ~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~---~~~~~~~~a~l~  316 (484)
T PRK11375        244 AVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRW---DSLFASFFAVLV  316 (484)
T ss_pred             HccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHh---cchHHHHHHHHH
Confidence            34667777777766    5455555566666666555455443    456666532  2333322   112222233344


Q ss_pred             HHHHHHhh-hhcccccHHHHHHHHh
Q 015596          254 IVVHLVGA-YQVFCQPLFAFVEKWS  277 (404)
Q Consensus       254 ~~i~~~~s-~pl~~~p~~~~~e~~~  277 (404)
                      .+++.... ......+.-..+..++
T Consensus       317 ~v~a~~~tN~~~N~ys~~~~l~~l~  341 (484)
T PRK11375        317 ILMTTISTNATGNIIPAGYQIAALA  341 (484)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHhC
Confidence            44444444 2345555555555544

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=95.46  E-value=0.69  Score=44.08  Aligned_cols=78  Identities=17%  Similarity=0.136  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhhhhHhhhHH---HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcC
Q 015596           64 FWTTSSHIITAVIGSGVLSL---AWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG  140 (404)
Q Consensus        64 ~~~a~~~l~~~~iG~GiL~l---P~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G  140 (404)
                      .....+-.+.+++|+|.=+=   =.=|..-|+. |....++.+++-..+..++.+..++.+      ..+|.|..++.+|
T Consensus         5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~   77 (349)
T COG3949           5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSG   77 (349)
T ss_pred             HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhh
Confidence            44566777789999997652   2235666776 677777777777777788887776433      2399999999999


Q ss_pred             CCcceeee
Q 015596          141 GKKVIFCG  148 (404)
Q Consensus       141 ~~~~~l~~  148 (404)
                      ++...+.+
T Consensus        78 ~~~~ki~d   85 (349)
T COG3949          78 PKFAKIID   85 (349)
T ss_pred             HHHHHHHH
Confidence            98665443

>TIGR02119 panF sodium/pantothenate symporter

Probab=94.25  E-value=7.1  Score=39.71  Aligned_cols=83  Identities=11%  Similarity=-0.039  Sum_probs=49.0

Q ss_pred             CCCCccccccHHHHHHHHHhhhhhHhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCCCCccc
Q 015596           54 DDGRLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTA----NLLSQCYRSGDPVTGQRN  128 (404)
Q Consensus        54 ~~~~~~r~~s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~~~l~~~~~~~~~s~----~lL~~~~~~~~~~~g~~~  128 (404)
                      |.....|+.+++...+.+..+.+|++. ++.|-...+.|+........ .....+.+.    ..+.+..+    +.|  .
T Consensus        34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~--~  106 (471)
T TIGR02119        34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISR----KYN--A  106 (471)
T ss_pred             ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HcC--C
Confidence            345556777899999999999998655 47888888888642111110 001111111    12222233    223  4


Q ss_pred             ccHHHHHHHHcCCCc
Q 015596          129 YTYMDAVKANLGGKK  143 (404)
Q Consensus       129 ~~y~~l~~~~~G~~~  143 (404)
                      .|..|..+.-||++.
T Consensus       107 ~T~~e~l~~Ryg~~~  121 (471)
T TIGR02119       107 ITINDVLKARYNNKF  121 (471)
T ss_pred             ccHHHHHHHHcCCCc
Confidence            599999999999664

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=94.16  E-value=7  Score=39.27  Aligned_cols=147  Identities=18%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             hhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-chhhhcccCCCCChHHHHHHHHHHHH
Q 015596          178 SFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-PNNLLTGFGFYNPYWLIDIANAAIVV  256 (404)
Q Consensus       178 ~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~i  256 (404)
                      ..-....+..+-+|+|++  ++.-.....+....+.+-+.+|.+...+=|+.. .......++.     +-..+.+..++
T Consensus       208 sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-----~g~~~~lil~l  280 (442)
T COG1457         208 SWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-----FGLPAILILVL  280 (442)
T ss_pred             hhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-----HHHHHHHHHHH
Confidence            445667777788888733  356666777788888899999999999999887 5555555531     23344444444


Q ss_pred             HHHhhhhcccccHHHHHHHHhhccCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHh----hcCChHHHH
Q 015596          257 HLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISM----LLPFFNDVV  332 (404)
Q Consensus       257 ~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~----~vp~~~~i~  332 (404)
                      ..+.+--..+++..-.+....    ++.              +|    ..+.++..+.  +.+++|+    +..+++.++
T Consensus       281 ~~~ttN~~nlYsa~ls~~~i~----~~l--------------~k----~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl  336 (442)
T COG1457         281 GTVTTNANNLYSAGLSFANII----PKL--------------SK----VTRVVIAGVG--IGTLLALAGPFFYNFFENFL  336 (442)
T ss_pred             HHHhcCcHHHHHHHHHHHHhh----hhh--------------hh----HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            444444444443333333332    110              00    1222222221  3333333    356788899


Q ss_pred             HHHhhhhhhhHHHHhhHHhHHhhc
Q 015596          333 GILGAMGFWPLTVYFPIEMYKAQK  356 (404)
Q Consensus       333 ~liGa~~~~~l~fi~P~l~yl~~~  356 (404)
                      .++|+... +..-+.=+-.|+..|
T Consensus       337 ~~i~~~i~-P~~~I~iad~~~~rr  359 (442)
T COG1457         337 LLLGYFIP-PWGGVMIADYFIVRR  359 (442)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhc
Confidence            99998775 444444455554443

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=93.87  E-value=8.8  Score=39.40  Aligned_cols=88  Identities=17%  Similarity=-0.034  Sum_probs=52.3

Q ss_pred             CCCCccccccHHHHHHHHHhhhhh-HhhhHHHHHHHHhChhHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 015596           54 DDGRLKRTGNFWTTSSHIITAVIG-SGVLSLAWAIAQLGWVAGPTVLI---LFALVNLYTANLLSQCYRSGDPVTGQRNY  129 (404)
Q Consensus        54 ~~~~~~r~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~g~~~l~---~~~~~~~~s~~lL~~~~~~~~~~~g~~~~  129 (404)
                      |.....|+.+.+-..+...-+.++ .-.+++|-...+.|+........   +..+...+-...+.+-.+    ..|  ..
T Consensus        32 dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~----~~~--~~  105 (493)
T COG0591          32 DYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK----ARG--AT  105 (493)
T ss_pred             HHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC--Cc
Confidence            334445555556677777777776 88889999999999875333333   222222222333333322    223  45


Q ss_pred             cHHHHHHHHcC-CCcceee
Q 015596          130 TYMDAVKANLG-GKKVIFC  147 (404)
Q Consensus       130 ~y~~l~~~~~G-~~~~~l~  147 (404)
                      |..|..+.-|| +..+.+.
T Consensus       106 T~~d~l~~Rf~s~~lr~l~  124 (493)
T COG0591         106 TIPDFLEARFGSKILRILS  124 (493)
T ss_pred             cHHHHHHHHcCChHHHHHH
Confidence            99999999999 5444443

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]

Probab=93.83  E-value=1.1  Score=47.19  Aligned_cols=187  Identities=17%  Similarity=0.224  Sum_probs=92.3

Q ss_pred             HHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHh-HHHh--------hcCCCCchhhhcccCCCCChHHHH----HHHHHH
Q 015596          188 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC-MGYA--------AFGDLAPNNLLTGFGFYNPYWLID----IANAAI  254 (404)
Q Consensus       188 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~-~gy~--------~fG~~~~~~il~~~~~~~~~~~~~----~~~~~~  254 (404)
                      .++|++.   |..+.-...|...++.+|+...+ +|..        .||+++.+++....-.+...|.+.    +.-.+.
T Consensus       434 GDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GA  510 (1075)
T KOG2082|consen  434 GDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGA  510 (1075)
T ss_pred             ccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHH
Confidence            5566652   55666677788888888874433 3332        688888887755432223345333    333455


Q ss_pred             HHHHHhhhhcccccHHHHHHHHhhccCCCCccccccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhcCChHHHHHH
Q 015596          255 VVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGI  334 (404)
Q Consensus       255 ~i~~~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~vp~~~~i~~l  334 (404)
                      .++.+++-|.++|.+.+  ++++....|..+ .++   ..-|            .+.+++.++.+-+++++-+++.+-.+
T Consensus       511 gLQsLtgAPRLLQAIAk--D~IiPfL~~F~~-~~~---ngEP------------t~aLlLT~~Ice~gILigslD~iApi  572 (1075)
T KOG2082|consen  511 GLQSLTGAPRLLQAIAK--DDIIPFLAPFGH-GKA---NGEP------------TWALLLTAIICECGILIGSLDLIAPI  572 (1075)
T ss_pred             HHhhhcCcHHHHHHHhh--cCccchhhhhcc-ccC---CCCc------------cHHHHHHHHHHHhhheeechhHHHHH
Confidence            66777777877665433  232211111110 001   0112            22334444455566677777776666


Q ss_pred             HhhhhhhhHHHHhhHHhHHh--hccCCCcchh-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhcc
Q 015596          335 LGAMGFWPLTVYFPIEMYKA--QKKIGRGTTR-----WLGLQILNVSCFFITLVAAI------GSVAGVVLDLKTY  397 (404)
Q Consensus       335 iGa~~~~~l~fi~P~l~yl~--~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~------~si~~ii~~~~~~  397 (404)
                      +.-++  .+||.|--+.--.  +-+.+.|++|     |.+..+=..+|+.+++...+      ..+.++|-++-+|
T Consensus       573 lsmFF--LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEy  646 (1075)
T KOG2082|consen  573 LSMFF--LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEY  646 (1075)
T ss_pred             HHHHH--HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            65433  5555544433322  2233444443     32323333445555544322      3445666655554

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=92.88  E-value=0.64  Score=45.11  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      |+.++-..+.+..+-+=..++-|+|-+-=|-.-++.||+++.+++++.+++.---.....-....   |.+  ..+.+|+
T Consensus        45 DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv---R~~--G~Si~~i  119 (376)
T PF02554_consen   45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV---RHK--GKSIGEI  119 (376)
T ss_pred             CCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh---cCC--CccHHHH
Confidence            44444444567778888899999999999999999999999999888777665555555443321   222  2389999


Q ss_pred             HHHHcCCCcceeeee
Q 015596          135 VKANLGGKKVIFCGL  149 (404)
Q Consensus       135 ~~~~~G~~~~~l~~~  149 (404)
                      +++..|++++.+..+
T Consensus       120 ~~~~lG~~~~~lf~~  134 (376)
T PF02554_consen  120 AGKYLGKRAKKLFLI  134 (376)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999876544

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>TIGR00835 agcS amino acid carrier protein

Probab=92.81  E-value=0.79  Score=45.83  Aligned_cols=48  Identities=21%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             cccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 015596           61 TGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYT  109 (404)
Q Consensus        61 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~s  109 (404)
                      +.|-+++.+..+.+.+|+| |+++|.|.+..| ..+++++-+.+++..-+
T Consensus        46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~   94 (425)
T TIGR00835        46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMAT   94 (425)
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence            4688999999999999998 999999977776 45666655555444433

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=92.76  E-value=1.6  Score=43.42  Aligned_cols=78  Identities=17%  Similarity=0.215  Sum_probs=45.6

Q ss_pred             cccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      .|+.+++...+++..+.+|+ .+++.|-...+.|+.. ....+...........++.+-.++    .+  ..|..|.-++
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~----~~--~~T~~e~~~~   77 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR----SG--AVTIPEYLEK   77 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH----TT----SHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc----cc--hhhhhhhhhh
Confidence            35567888888888888886 5668899988889863 222222222223333444444442    22  4599999999


Q ss_pred             HcCCCc
Q 015596          138 NLGGKK  143 (404)
Q Consensus       138 ~~G~~~  143 (404)
                      -||++.
T Consensus        78 Ryg~~~   83 (406)
T PF00474_consen   78 RYGSKA   83 (406)
T ss_dssp             HT-HHH
T ss_pred             hcCCch
Confidence            999988

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=92.19  E-value=15  Score=37.50  Aligned_cols=84  Identities=11%  Similarity=-0.010  Sum_probs=47.7

Q ss_pred             CCCCccccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHH--HHHHHHH-HHHHHHHHHhhhcCCCCCCcccc
Q 015596           54 DDGRLKRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVL--ILFALVN-LYTANLLSQCYRSGDPVTGQRNY  129 (404)
Q Consensus        54 ~~~~~~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l--~~~~~~~-~~s~~lL~~~~~~~~~~~g~~~~  129 (404)
                      |.-...|+.+++...+.+..+.+|+ ..++.|....+.|+.......  .....+. .+-...+.+..++    .+  ..
T Consensus        35 dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~--~~  108 (483)
T PRK09442         35 EYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK----YN--AV  108 (483)
T ss_pred             ceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC--Cc
Confidence            3444566677888888888887775 556788877777864211110  1111111 1112222233332    22  46


Q ss_pred             cHHHHHHHHcCCCc
Q 015596          130 TYMDAVKANLGGKK  143 (404)
Q Consensus       130 ~y~~l~~~~~G~~~  143 (404)
                      |..|..+.-||++.
T Consensus       109 T~~e~l~~Ryg~~~  122 (483)
T PRK09442        109 TLNDMLRARYQSRL  122 (483)
T ss_pred             cHHHHHHHHhCChH
Confidence            99999999998764

>PRK12488 acetate permease; Provisional

Probab=90.62  E-value=24  Score=36.79  Aligned_cols=87  Identities=17%  Similarity=0.099  Sum_probs=51.7

Q ss_pred             CCCCCccccccHHHHHHHHHhhhhhHh-hhHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCCCccccc
Q 015596           53 DDDGRLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLY-TANLLSQCYRSGDPVTGQRNYT  130 (404)
Q Consensus        53 ~~~~~~~r~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~g~~~l~~~~~~~~~-s~~lL~~~~~~~~~~~g~~~~~  130 (404)
                      +|..--.|+.++|...+.+..+.++++ .++.|-...+.|+-. .. ..+...+.+. ...++.+-.+    +.|  ..|
T Consensus        60 ~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr----~~g--~~T  131 (549)
T PRK12488         60 SDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLR----NLG--KYT  131 (549)
T ss_pred             HHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHH----HCC--Ccc
Confidence            445556777888888999988888766 468999888888753 21 1111111111 1223333333    233  368


Q ss_pred             HHHHHHHHcCCC-cceee
Q 015596          131 YMDAVKANLGGK-KVIFC  147 (404)
Q Consensus       131 y~~l~~~~~G~~-~~~l~  147 (404)
                      ..|..+.=||.+ .+.+.
T Consensus       132 ~~d~l~~Rf~s~~~r~la  149 (549)
T PRK12488        132 FADVVSYRLAQGPVRLTA  149 (549)
T ss_pred             hHHHHHHHcCCCcchHHH
Confidence            999888888743 44443

>TIGR00813 sss transporter, SSS family

Probab=89.78  E-value=22  Score=35.35  Aligned_cols=80  Identities=16%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             ccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHH
Q 015596           60 RTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN  138 (404)
Q Consensus        60 r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~  138 (404)
                      |+.+++...+.+..+.+|+ ..++.|....+.|+.. ....+...........+..+..+    +.|  ..|..|..+.-
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~T~~e~l~~R   75 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFI----NNG--AYTMPEYLEKR   75 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HcC--CCchhHHHHHH
Confidence            5566788888887777775 4557888888888642 22222222222333444444443    223  46999999999


Q ss_pred             cCCC-ccee
Q 015596          139 LGGK-KVIF  146 (404)
Q Consensus       139 ~G~~-~~~l  146 (404)
                      ||++ .+.+
T Consensus        76 yg~~~~~~~   84 (407)
T TIGR00813        76 FGKRILRGL   84 (407)
T ss_pred             hCchHHHHH
Confidence            9984 4443

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK11017 codB cytosine permease; Provisional

Probab=88.10  E-value=30  Score=34.49  Aligned_cols=52  Identities=15%  Similarity=0.031  Sum_probs=29.8

Q ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcceeee
Q 015596           90 LGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCG  148 (404)
Q Consensus        90 ~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~~l~~  148 (404)
                      +++.-+++..++...+...-..+......    ++|   .++..+.|..||.+|.++..
T Consensus        39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~----k~G---~~~~v~sR~~FG~~Gs~l~~   90 (404)
T PRK11017         39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA----KTG---LSTHLLARFSFGEKGSWLPS   90 (404)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---cCHHHHHHHHhchhHHHHHH
Confidence            44555555555554443333333333322    333   57999999999999876543

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=87.45  E-value=6.6  Score=39.34  Aligned_cols=182  Identities=13%  Similarity=0.055  Sum_probs=102.7

Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHhHHHhhcCCCCchhhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHh
Q 015596          199 TMKKATLFSIIVT-TTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWS  277 (404)
Q Consensus       199 ~~~~~~~~a~~~~-~~~y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~  277 (404)
                      +-+++...+..+. .+-.++....++..||.--+...-+-....+.......+..........+++...+++++..-..+
T Consensus       222 ~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl  301 (415)
T COG0814         222 NSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL  301 (415)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence            4444344444444 444557777788888764443333333333334444444445555556899999999887765544


Q ss_pred             hccCCCCccccccccCCCCCcccc-ccchhhHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhhhhhhHHHHhhHHhHHhh
Q 015596          278 AKKWPKSDLVTAEYEIPIPFWGVY-QLNLFRLVWRTLFVVLTTLISMLLP-FFNDVVGILGAMGFWPLTVYFPIEMYKAQ  355 (404)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~r~~~v~~~~~ia~~vp-~~~~i~~liGa~~~~~l~fi~P~l~yl~~  355 (404)
                      +..-.-.+..++.        -+| +.+..|..........+++.++..| -+....+..|++...+.+-++|.+++++-
T Consensus       302 gv~lg~~~~~~~~--------~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p  373 (415)
T COG0814         302 GVYLGLFEGLADL--------FKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKP  373 (415)
T ss_pred             CchhhHHHhhhHH--------HHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2110000001110        111 2223355555555566777777777 57788888998999999999999999996


Q ss_pred             ccCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015596          356 KKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVA  388 (404)
Q Consensus       356 ~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~si~  388 (404)
                      ++...   ..+++........+-+++|+......+.
T Consensus       374 ~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~  409 (415)
T COG0814         374 RKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL  409 (415)
T ss_pred             HHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence            54331   2222222223555656666666555544

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=86.79  E-value=1.4  Score=44.89  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             CCCccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 015596           55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA  134 (404)
Q Consensus        55 ~~~~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l  134 (404)
                      ||.++-..+.+-.+-|=.-++-|+|-+-=|---+|.||.++.+++++.+++.---...++-....   |.+  ..|.+|+
T Consensus        45 DG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv---R~~--G~Si~~i  119 (575)
T COG1966          45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV---RHG--GKSIGEI  119 (575)
T ss_pred             CCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee---ccC--CccHHHH
Confidence            44444334456677777888999999999999999999999999988887766555555443321   222  2389999


Q ss_pred             HHHHcCCCcceeee
Q 015596          135 VKANLGGKKVIFCG  148 (404)
Q Consensus       135 ~~~~~G~~~~~l~~  148 (404)
                      +++.+|+..+.+..
T Consensus       120 a~~~lG~~a~~~~~  133 (575)
T COG1966         120 AGKYLGRTAKVFFL  133 (575)
T ss_pred             HHHHhhhhHHHHHH
Confidence            99999999886543

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=86.78  E-value=29  Score=34.35  Aligned_cols=57  Identities=25%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHH-HhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 015596          166 SLQALGAIAFAYSFSIILLEIQD-TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA  225 (404)
Q Consensus       166 ~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~  225 (404)
                      .+.+++-++|+   ..++..+.. ++|+|++..++.-++-.++......+|...+..|...
T Consensus       186 TmD~laal~fg---~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~  243 (378)
T TIGR00796       186 TMDALAALVFG---IIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATS  243 (378)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34455555554   456666666 8888742222222333334555566666666666544

transmembrane helical spanners.

>PRK15015 carbon starvation protein A; Provisional

Probab=86.53  E-value=3.3  Score=43.29  Aligned_cols=81  Identities=16%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHHcCCCcc
Q 015596           65 WTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKV  144 (404)
Q Consensus        65 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~~~G~~~~  144 (404)
                      +--+-|=..++-|+|-+-=|..-++.||+++.+++++.+++.---.....-....   |.+  ..|.+|++++..|++++
T Consensus        86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~---R~~--GrSig~ia~~~iG~~~~  160 (701)
T PRK15015         86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST---RRD--GRSLGELVKEEMGPTAG  160 (701)
T ss_pred             cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee---cCC--CccHHHHHHHHhhHHHH
Confidence            4556677889999999999999999999999999888776554444444332211   222  23899999999999988


Q ss_pred             eeeeee
Q 015596          145 IFCGLI  150 (404)
Q Consensus       145 ~l~~~~  150 (404)
                      .+..+.
T Consensus       161 ~lfli~  166 (701)
T PRK15015        161 VIALVA  166 (701)
T ss_pred             HHHHHH
Confidence            765443

>PHA02764 hypothetical protein; Provisional

Probab=80.60  E-value=15  Score=35.04  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             cccccHHHHHH-HHHhhhhhHhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 015596           59 KRTGNFWTTSS-HIITAVIGSGVLSLAWAIAQL--GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV  135 (404)
Q Consensus        59 ~r~~s~~~a~~-~l~~~~iG~GiL~lP~af~~~--G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~  135 (404)
                      -|..+.+.+++ |+.+...|.++ +.|+-++..  |.- .+..+++.++++........+.+...++..|  .+.|-+  
T Consensus        11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGG--dYVYIS--   84 (399)
T PHA02764         11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGG--DYAYIR--   84 (399)
T ss_pred             eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc--eEEEhH--
Confidence            34556777776 88777777765 556533333  443 5567777777777777777887777665444  356655  


Q ss_pred             HHHcCCCcceeee
Q 015596          136 KANLGGKKVIFCG  148 (404)
Q Consensus       136 ~~~~G~~~~~l~~  148 (404)
                       +++|+....+.+
T Consensus        85 -RAFGP~~GFLvG   96 (399)
T PHA02764         85 -TAFSSKFYTIFG   96 (399)
T ss_pred             -HhhCccHHHHHH
Confidence             778886655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.47
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.05
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.77
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.0
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	88.92

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.47  E-value=1.8e-12  Score=129.04  Aligned_cols=281  Identities=10%  Similarity=0.044  Sum_probs=170.0

Q ss_pred             ccccccHHHHHHHHHhhhhhHhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      ++|+.+.++.++..+.+++|+|++.+|...++.|.. +++.+++.+++.......+.|.....+. .|    .+-+.+++
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~~   79 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYARR   79 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHHh
Confidence            467788999999999999999999999998889974 7888888888888888888888876553 22    34445567


Q ss_pred             HcCCCcceeeeeeeeee--------------------------------------------Ee-----------------
Q 015596          138 NLGGKKVIFCGLIQYLN--------------------------------------------LF-----------------  156 (404)
Q Consensus       138 ~~G~~~~~l~~~~~~~~--------------------------------------------l~-----------------  156 (404)
                      .+|+...++++...++.                                            +.                 
T Consensus        80 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i  159 (445)
T 3l1l_A           80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLAL  159 (445)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            88876543322111100                                            00                 


Q ss_pred             -------------ecCc-------h----hhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596          157 -------------VTGT-------Q----KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT  212 (404)
Q Consensus       157 -------------~~~~-------~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~  212 (404)
                                   .+..       .    ...++..++....|+|.+...+..+..|+|+|+   |+.+|++..++.+++
T Consensus       160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~  236 (445)
T 3l1l_A          160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAA  236 (445)
T ss_dssp             HHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHH
Confidence                         0000       0    123477889999999999999999999999983   789999999999999


Q ss_pred             HHHHHHHhHHHhhcCCCCch----hhhcccCCCCChHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHhhc-cCCCCccc
Q 015596          213 TFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLV  287 (404)
Q Consensus       213 ~~y~~~g~~gy~~fG~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~e~~~~~-~~~~~~~~  287 (404)
                      ++|++..+......+.+...    .+..-+......+...+..++..+....+.--......+.+...-.+ ..|+  +.
T Consensus       237 ~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~  314 (445)
T 3l1l_A          237 VCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP--IF  314 (445)
T ss_dssp             HHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCG--GG
T ss_pred             HHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcH--HH
Confidence            99999998887777654211    11110000001233344555555555555433333333333332221 1231  12


Q ss_pred             cccccCCCCCccccccchhhHHHHHHHHHHHHHHHhhc----CChHHHHHHHhhhhhhhHHHHhhHHhHHhhccCCC
Q 015596          288 TAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLL----PFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR  360 (404)
Q Consensus       288 ~~~~~~~~p~~~~~~~~~~~~~~r~~~v~~~~~ia~~v----p~~~~i~~liGa~~~~~l~fi~P~l~yl~~~~~~~  360 (404)
                      .+.++.+.|        ...+.+..++..+ ..+....    ..++.+.++.+  .+..+.|.++.+.+++.+++++
T Consensus       315 ~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          315 ARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             GCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            221122333        2222222222211 1111112    34677777665  3467889999999988876544

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.05  E-value=1.1e-08  Score=101.46  Aligned_cols=161  Identities=15%  Similarity=0.227  Sum_probs=117.4

Q ss_pred             ccccccHHHHHHHHHhhhhhHhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           58 LKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      ++|+.+.++..+..+++++|+|++.+|. +....|. ..++.+++.+++.......+.|.....+. .|    ..-+.++
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~G----g~y~~~~   77 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NA----GPIAFIH   77 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TT----THHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC----cHHHhHH
Confidence            4677899999999999999999998765 4666776 57888888888888888899998876654 22    2335666


Q ss_pred             HHcCCC--cceeeeeee-----------------ee---------------------------eEe--------------
Q 015596          137 ANLGGK--KVIFCGLIQ-----------------YL---------------------------NLF--------------  156 (404)
Q Consensus       137 ~~~G~~--~~~l~~~~~-----------------~~---------------------------~l~--------------  156 (404)
                      +.+|++  +.++ +...                 ++                           ++.              
T Consensus        78 ~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (444)
T 3gia_A           78 KAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVL  156 (444)
T ss_dssp             HHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            788885  2211 0000                 00                           000              


Q ss_pred             ----------------ec-----C--c-hhhhHHHHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHH
Q 015596          157 ----------------VT-----G--T-QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTT  212 (404)
Q Consensus       157 ----------------~~-----~--~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~  212 (404)
                                      .+     +  . ....+++.++....|+|.+...+.....|+|+|+   |+.+|++..++.+++
T Consensus       157 ~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~  233 (444)
T 3gia_A          157 VKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVM  233 (444)
T ss_dssp             HHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHH
Confidence                            00     0  1 1123577888888999999999999999999983   679999999999999


Q ss_pred             HHHHHHHhHHHhhcCC
Q 015596          213 TFYLLCGCMGYAAFGD  228 (404)
Q Consensus       213 ~~y~~~g~~gy~~fG~  228 (404)
                      ++|++..+......+.
T Consensus       234 ~~y~~~~~~~~~~~~~  249 (444)
T 3gia_A          234 FVYVGVAISAIGNLPI  249 (444)
T ss_dssp             HHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHhCCCH
Confidence            9999988776665543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.77  E-value=2.5e-07  Score=93.43  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhcCCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 015596          167 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL  229 (404)
Q Consensus       167 ~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fG~~  229 (404)
                      +.++....|+|.|......+..|+|+|+   |+.+|++..++.+++++|++..+......+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3456678899999999999999999994   78999999999999999999998888777765

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.00  E-value=0.062  Score=53.77  Aligned_cols=82  Identities=7%  Similarity=0.015  Sum_probs=48.1

Q ss_pred             ccccccHHHHHHHHHhhhhhHhhhHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 015596           58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQ-LGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK  136 (404)
Q Consensus        58 ~~r~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~  136 (404)
                      ++|+.++++-+..-+...++.+.+.+...+.. .++.-+++.+++..++...-+.+......    +.|   .+|.++.+
T Consensus        23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~G---l~~~v~~R   95 (501)
T 2jln_A           23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RWG---INFTVAAR   95 (501)
T ss_dssp             GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHC---CCHHHHTT
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hcC---CChhhhhH
Confidence            34555666666555665555555555444333 33455666666665555544444444433    223   46999999


Q ss_pred             HHcCCCccee
Q 015596          137 ANLGGKKVIF  146 (404)
Q Consensus       137 ~~~G~~~~~l  146 (404)
                      ..||++|..+
T Consensus        96 ~~FG~~Gs~i  105 (501)
T 2jln_A           96 MPFGIRGSLI  105 (501)
T ss_dssp             TTSCTTTTHH
T ss_pred             hhcchhHHHH
Confidence            9999998754

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=88.92  E-value=20  Score=35.69  Aligned_cols=82  Identities=12%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             cccccHHHHHHHHHhhhhhH-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 015596           59 KRTGNFWTTSSHIITAVIGS-GVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA  137 (404)
Q Consensus        59 ~r~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~g~~~l~~~~~~~~~s~~lL~~~~~~~~~~~g~~~~~y~~l~~~  137 (404)
                      .|+.++|...+.+..+.+++ .++++|-...+.|+......+.....+ ......+..-.++    .+  ..|..|..++
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~-~i~~~~~~p~~~~----~~--~~T~~e~l~~   91 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITL-IIVGKYFLPIFIE----KG--IYTIPEFVEK   91 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHH-HHHHHHTHHHHHH----TT--CCSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHH----cC--CccHHHHHHH
Confidence            45667888888888888775 456899998889976432221111111 1112222232331    22  4699999999


Q ss_pred             HcCCCcceee
Q 015596          138 NLGGKKVIFC  147 (404)
Q Consensus       138 ~~G~~~~~l~  147 (404)
                      -||++.+.+.
T Consensus        92 Rfg~~~~~~~  101 (530)
T 3dh4_A           92 RFNKKLKTIL  101 (530)
T ss_dssp             HTCHHHHHHH
T ss_pred             HcCcHHHHHH
Confidence            9998766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00